<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:21:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217634" ref_strand="+" ref_description="SGN-E217634 [cLEL-25-G11](-)">
      <seq>agttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccaattgttcaccttgccaaaaaatttcccttctcatgaggatcagaaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcattcaattccatgtaacatttcaagttgtaaactgtgagaaaacatttagacccattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="15387" stop="14379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15087" g_stop="14682" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="429"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E217634" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15087" e_stop="14682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACC-ATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAG-AATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</genome_strand>
        <mrna_strand>AGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCAATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217590" ref_strand="+" ref_description="SGN-E217590 [cLEL-25-G23](-)">
      <seq>ctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcattcaattccatgtaacatttcaagttgtaaactgtcagaaaacatttagacacattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="15369" stop="14379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15069" g_stop="14682" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="409"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E217590" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15069" e_stop="14682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</genome_strand>
        <mrna_strand>CTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTCAGAAAACATTTAGACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416341" ref_strand="-" ref_description="SGN-E416341 [STM-22-N16]">
      <seq>gaaagcctttggtccctgactatgctatgagcttcgttggtggtagttcctcaaaaccgtttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatcccctacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggaaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccgtctcacgaggaacagaattgtaatgaagtgtcccaataatttaagattaattaattgcgattaccaaatggtctttccccctttgtatgggggattatttttaggatcttagttttattgattaatttgcctccagacattgtttcacaatacaatcatgccaatgttgaagttggtgaaggcgtgagttaatgtaatagtaaagtgaacatgtgtcatgtcctattctagttcccagaaaatgtatttagagcattcaattccatgaaacatttcaacttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16262" stop="14407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16045" g_stop="16035" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="55" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="125" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="229" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15120" g_stop="14697" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="649" r_length="420" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E416341" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416341" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16045" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAA</genome_strand>
        <mrna_strand>GAAAGCCTTTG.........................................................................GTCCCTGACTATGCTATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCGTTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCCCTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGAAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCGTCTCACGAGGAACAGAATTGTAATGAAGTGTCCCAATAATTT-AAGATTAATTAATTGCGATTACCAAATGGTCTTTCCCCCTTTGTAT-GGGG--GATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTCCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGTTGGTGAAGGCGTGAGTTAATGTAATAGTAAAGTGAACATGTGTCATGTCCTATTCTAGTTCCCAGAAAATGTATTTAGAGCATTCAATTCCATGAAACATTTCAACTTGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427643" ref_strand="-" ref_description="SGN-E427643 [STM-48-H24]">
      <seq>ttccagcattttataagaatggggagggatgggttgccgggaagcatactatatgatcatcgtcctcttcagttgaatgaagatgatcatcagcgtgtatgtcaaattcccaagcggaagggtgcaaacttcagggacttgcctggagttcgtgttcggccagataataaagttgaatgggacccagatgtggagagagtaaagctaccttctggaaagcctttggtccctgactatgctatgagcttcgttggtggtagttcctcaaaaccgtttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatcccctacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggaaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccgtctcacgaggaacagaattgtaatgaagtgtcccaataatttaagattaattaattgcgattaccaaatggtctttccccctttgtatgggggattatttttaggatcttagtattattgattaatttgcctccagacattgtttcacaatacaatcatgccaatgttgaagttggtgaaggcgtgagaagatgtaatagtaaagtgaacatgtgtcatgtcctcttaatggaaccagaaaatgtatttagagcattcaattccagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16829" stop="14466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16529" g_stop="16499" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16315" g_stop="16227" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="120" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="225" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="269" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="339" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="443" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15120" g_stop="14729" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="831" r_length="388" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="832" polyA_stop="849"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E427643" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427643" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16529" e_stop="16499"/>
          <exon e_start="16315" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCC</genome_strand>
        <mrna_strand>TTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGCCGGGAAGCATACTATATGATCATCGTCCTCTTCAGTTGAATGAAGATGATCATCAGCGTGTATGTCAAATTCCCAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCTGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGATGTGGAGAGAGTAAAGCTACCTTCTGGAAAGCCTTTG.........................................................................GTCCCTGACTATGCTATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCGTTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCCCTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGAAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCGTCTCACGAGGAACAGAATTGTAATGAAGTGTCCCAATAATTT-AAGATTAATTAATTGCGATTACCAAATGGTCTTTCCCCCTTTGTAT-GGGG--GATTATTTTTAGGATCTTAGTATTATTGATTAATTTGCCTCCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGTTGGTGAAGGCGTGAGAAGATGTAATAGTAAAGTGAACATGTGTCATGTCCTCTTAATGGAACCAGAAAATGTATTTAGAGCATTCAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444891" ref_strand="-" ref_description="SGN-E444891 [cSTA-44-A18]">
      <seq>ttgaatgggacccagatgtgaagagagtaaagctaccttctggaaagcctttggtccctgactatgctatgagcttcgttggtggtagttcctcaaaaccgtttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatcccctacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggaaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccgtctcacgaggaacagaattgtaatgaagtgtcccaataatttaagattaattaattgcgattaccaaatggtctttccccctttgtatgggggattatttttaggatcttagttttattgattaatttgcctccagacattgtttcacaatacaatcatgccaatgttgaagttggtgaaggcgtgagttaatgtaatagtaaagtgaacatgtgtcatgtcctattctagttcccagaaaatgtatttagagcattcaattcaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16387" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16087" g_stop="16035" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="97" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="167" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="271" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15120" g_stop="14729" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="659" r_length="388" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="679"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E444891" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444891" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16087" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCC</genome_strand>
        <mrna_strand>TTGAATGGGACCCAGATGTGAAGAGAGTAAAGCTACCTTCTGGAAAGCCTTTG.........................................................................GTCCCTGACTATGCTATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCGTTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCCCTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGAAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCGTCTCACGAGGAACAGAATTGTAATGAAGTGTCCCAATAATTT-AAGATTAATTAATTGCGATTACCAAATGGTCTTTCCCCCTTTGTAT-GGGG--GATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTCCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGTTGGTGAAGGCGTGAGTTAATGTAATAGTAAAGTGAACATGTGTCATGTCCTATTCTAGTTCCCAGAAAATGTATTTAGAGCATTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444892" ref_strand="+" ref_description="SGN-E444892 [cSTA-44-A18]">
      <seq>gagagaactagtctcgagtataatcttttgtaacctcagaattgaatgctctaaatacattttctgggaactagaataggacatgacacatgttcactttactattacattaactcacgccttcaccaacttcaacattggcatgattgtattgtgaaacaatgtctggaggcaaattaatcaataaaactaagatcctaaaaataatcccccatacaaagggggaaagaccatttggtaatcgcaattaattaatcttaaattattgggacacttcattacaattctgttcctcgtgagacgggaaattttttggcaaggtgaacaatggtgtttctccagataatccctttattgacatggccaaagaatagcccaatgctcgggcaactggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="14430" stop="15393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14730" g_stop="15093" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="398" r_length="360" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E444892" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14730" e_stop="15093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAATGCTCAAAATACATTTTCTGGGAACTAGAATAGAACATGACACATGTTCACCTTGCTATTACATAAACCCACGCCTTCACCAGCTTCAACATTGGCATGATTGTATTGTGAAACAATGTCTGAAGGCAAATTAATCAATAAAACTAAGATCCTAAAAATAATCATCCCCCATACAGAGGGTGAAAGATAGTTTGGTAATCTCAATTAGTTAATGTTTAAATTATTGTGACACTTCATTACAATTCTGATCCTCATGAGAAGGGAAATTTTTTGGCAAGGTGAACAATGGTGTTTCTCCAGATAATCCCTTTATTGACATGGCCAAAGAATAGCCCAATGCTCGGGCAACTGGAACT</genome_strand>
        <mrna_strand>GAATTGAATGCTCTAAATACATTTTCTGGGAACTAGAATAGGACATGACACATGTTCACTTTACTATTACATTAACTCACGCCTTCACCAACTTCAACATTGGCATGATTGTATTGTGAAACAATGTCTGGAGGCAAATTAATCAATAAAACTAAGATCCTAAAAAT-A--ATCCCCCATACAAAGGGGGAAAGACCATTTGGTAATCGCAATTAATTAAT-CTTAAATTATTGGGACACTTCATTACAATTCTGTTCCTCGTGAGACGGGAAATTTTTTGGCAAGGTGAACAATGGTGTTTCTCCAGATAATCCCTTTATTGACATGGCCAAAGAATAGCCCAATGCTCGGGCAACTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282464" ref_strand="+" ref_description="SGN-E282464 [cLER-18-K17]">
      <seq>acaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="15916" stop="14437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15616" g_stop="15546" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15120" g_stop="14737" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="455" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E282464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15616" e_stop="15546"/>
          <exon e_start="15120" e_stop="14737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCAT</genome_strand>
        <mrna_strand>ACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346593" ref_strand="+" ref_description="SGN-E346593 [cTOF-28-L7]">
      <seq>gatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16565" stop="14528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16265" g_stop="16227" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="144" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="188" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="258" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="362" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15120" g_stop="14828" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="655" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E346593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16265" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAAT</genome_strand>
        <mrna_strand>GATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316747" ref_strand="+" ref_description="SGN-E316747 [cTOB-5-L18]">
      <seq>ttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16579" stop="14594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16279" g_stop="16227" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="158" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="202" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="272" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="376" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15120" g_stop="14894" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="603" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E316747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16279" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="14894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATT</genome_strand>
        <mrna_strand>TTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347489" ref_strand="+" ref_description="SGN-E347489 [cTOF-33-H2]">
      <seq>gataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16397" stop="14737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16097" g_stop="16035" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="107" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="177" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="281" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15120" g_stop="15037" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="365" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E347489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16097" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="15037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATC</genome_strand>
        <mrna_strand>GATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448639" ref_strand="+" ref_description="SGN-E448639 [cSTS-3-D24]">
      <seq>gaatttgagtcaacacagttgcgtatgattcaggccgggatcttgagttaaagaaagaactctttcttggtgacgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcccaaatctgatttccagcattttataagaatggggagggatgggttgccgggaagcatactatatgatcatcgtcctcttcagttgaatgaagatgatcatcagcgtgtatgtcaaattcccaagcggaagggtgcaaacttcagggacttgcctggagttcgtgttcggccagataataaagttgaatgggacccagatgtggagagagtaaagctaccttctggaaagcctttggtccctgactatgctatgagcttcgttggtggtagttcctcaaaaccgtttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatcccctacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggaaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17070" stop="14750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16855" g_stop="16847" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="95" r_length="86" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="183" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16315" g_stop="16227" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="377" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="421" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="595" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15120" g_stop="15050" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="666" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E448639" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16855" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="15050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAA</genome_strand>
        <mrna_strand>GAATTTGAG.................................................................................TC-AACACAGTTGCGTATGATTCAGGCCGGGATCTTGAGTTAAAGAAAGAACTCTTTCTTGGTGACGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCCAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGCCGGGAAGCATACTATATGATCATCGTCCTCTTCAGTTGAATGAAGATGATCATCAGCGTGTATGTCAAATTCCCAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCTGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGATGTGGAGAGAGTAAAGCTACCTTCTGGAAAGCCTTTG.........................................................................GTCCCTGACTATGCTATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCGTTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCCCTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGAAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317106" ref_strand="+" ref_description="SGN-E317106 [cTOA-27-N13]">
      <seq>ttgccacaatatccattgcccacacataaagttattgtgaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcagtcagggatctcgagttaaagaaagaactctttcttggtgatgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaggtacatgcaagtaggtaatgcagttgcagttccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17212" stop="14785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16912" g_stop="16847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="153" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="241" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16315" g_stop="16227" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="330" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="435" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="479" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="549" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15649" g_stop="15546" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="652" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15120" g_stop="15085" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="688" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E317106" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16912" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15546"/>
          <exon e_start="15120" e_stop="15085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGT</genome_strand>
        <mrna_strand>TTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAG-AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279934" ref_strand="+" ref_description="SGN-E279934 [cLER-8-M16]">
      <seq>aaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaatttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="16861" stop="15304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16561" g_stop="16499" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16315" g_stop="16227" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16139" g_stop="16035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="257" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15961" g_stop="15918" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="301" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15812" g_stop="15743" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="371" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15649" g_stop="15604" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="417" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E279934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16561" e_stop="16499"/>
          <exon e_start="16315" e_stop="16227"/>
          <exon e_start="16139" e_stop="16035"/>
          <exon e_start="15961" e_stop="15918"/>
          <exon e_start="15812" e_stop="15743"/>
          <exon e_start="15649" e_stop="15604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAA</genome_strand>
        <mrna_strand>AAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206361" ref_strand="+" ref_description="SGN-E206361 [cLEC-23-J3]">
      <seq>atgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgttttcatgtttggagctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtgaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcagtcagggatctcgagttaaagaaagaactctttcttggtgatgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17395" stop="15940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17095" g_stop="17015" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="150" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="237" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="325" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16315" g_stop="16240" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="401" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E206361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17095" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAAT</genome_strand>
        <mrna_strand>ATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484281" ref_strand="+" ref_description="SGN-E484281 [cSTE-12-D14]">
      <seq>tttacttcaaggtccgctggagaggttatggtccagaggaagacacctgggagccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcgttttaggaataaagaaaatccgatgcaggatcctaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaacgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgttgggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgtcttcatgtttggtgctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtaaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcaggccgggatcttgagttaaagaaagaactctttcttggtgacgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcccaaatctgatttccagcattttataagaatggggagggatgggttgccgggaagcatactatatgatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17988" stop="16198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17845" g_stop="17835" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17834" i_stop="17685" i_length="150">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17684" g_stop="17626" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="70" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="137" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="467" r_length="330" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="536" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="623" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="711" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16315" g_stop="16286" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="741" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E484281" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17845" e_stop="17835"/>
          <exon e_start="17684" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTCAAGGTACTTGACCATTGAGCTTGGAATTCTTTAATTCTTTGGTAGAACACAGATTTATTATGTGGAAAAGCTGAAGTCATTTTATGTTTTTTTTTTCTGTGTGTTTCTGGCACTTGTCATTTTCTGAAATCACTTTGATTACTTTGTGCCTAGGTTCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATC</genome_strand>
        <mrna_strand>TTTACTTCAAG......................................................................................................................................................GTCCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCTAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAACGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTTGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTCTTCATGTTTGGTGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTAAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGGCCGGGATCTTGAGTTAAAGAAAGAACTCTTTCTTGGTGACGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCCAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGCCGGGAAGCATACTATATGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486171" ref_strand="+" ref_description="SGN-E486171 [cSTE-21-E10]">
      <seq>agccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcgttttaggaataaagaaaatccgatgcaggatcctaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaacgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgttgggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgtcttcatgtttggtgctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtaaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcaggccgggatcttgagttaaagaaagaactctttcttggtgacgcactttctgatctccctttggtggagaacnatgangccagagatgaaatgccttacactgatgagcccaaatctgatttccagcattttataaaaatggggaaggatgggttgccgggaagcatactatatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17944" stop="16198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17644" g_stop="17626" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="86" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="416" r_length="330" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="485" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16586" g_stop="16499" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="660" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183">
            <donor d_prob="0.826" d_score="0.94"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16315" g_stop="16288" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="688" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E486171" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17644" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16499"/>
          <exon e_start="16315" e_stop="16288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCA</genome_strand>
        <mrna_strand>AGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCTAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAACGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTTGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTCTTCATGTTTGGTGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTAAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGGCCGGGATCTTGAGTTAAAGAAAGAACTCTTTCTTGGTGACGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACNATGANGCCAGAGATGAAATGCCTTACACTGATGAGCCCAAATCTGATTTCCAGCATTTTATAAAAATGGGGAAGGATG.......................................................................................................................................................................................GGTTGCCGGGAAGCATACTATATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214931" ref_strand="+" ref_description="SGN-E214931 [cLEC-78-J1]">
      <seq>gaaaatcagtgagtttgtggtgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtgggttcaatcgttttaggaataaagaaaatccgatgcaggatcccaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaatgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgtagggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgttttcatgtttggagctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtgaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcagtcagggatctcgagttaaagaaagaactctttcttggtgatgcactttctgatctccctttggtggagaacaatgagcccagagatgaaatgccttacactgatgaccctaaatctgatttccagcattttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17829" stop="16216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17529" g_stop="17475" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="385" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="454" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="541" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16586" g_stop="16516" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="612" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E214931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17529" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTAT</genome_strand>
        <mrna_strand>GAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCCAGAGATGAAATGCCTTACACTGATGACCCTAAATCTGATTTCCAGCATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482133" ref_strand="+" ref_description="SGN-E482133 [cSTD-21-E9]">
      <seq>agccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcgttttaggaataaagaaaatccgatgcaggatcctaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaacgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgttgggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgtcttcatgtttggtgctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgtaaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcaggccgggatcttgagttaaagaaagaactctttcttggtgacgcactttctgatctccctttggtgggagacaatgagccaagagatgaaatgccttacactgatgagcccaaatctgatttccagcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17944" stop="16219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17644" g_stop="17626" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="86" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="416" r_length="330" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16915" g_stop="16847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="485" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16765" g_stop="16679" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16586" g_stop="16519" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="640" r_length="68" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E482133" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17644" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16847"/>
          <exon e_start="16765" e_stop="16679"/>
          <exon e_start="16586" e_stop="16519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAGGTAGGCTTTTGATTTTTTAAAATGTCATGAATGCTGTATCAATTGATAATTGACTAAATGTCTATCTGTGTGCTAATGCAGTCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTT</genome_strand>
        <mrna_strand>AGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCTAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAACGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTTGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTCTTCATGTTTGGTGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTAAGGGGTGTTATTCCCGTAGAATTTGAG.................................................................................TCAAACACAGTTGCGTATGATTCAGGCCGGGATCTTGAGTTAAAGAAAGAACTCTTTCTTGGTGACGCACTTTCTGATCTCCCTTTG............................................................................................GTGGGAGACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCCAAATCTGATTTCCAGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486101" ref_strand="+" ref_description="SGN-E486101 [cSTE-21-E9]">
      <seq>agccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcgttttaggaataaagaaaatccgatgcaggatcctaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaacgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgttgggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgtcttcatgtttggtgctctttcatcagagaagttgccacaatatccattgcccacacataaagttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17944" stop="16575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17644" g_stop="17626" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="86" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17344" g_stop="17015" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="416" r_length="330" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16915" g_stop="16875" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="457" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E486101" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17644" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17015"/>
          <exon e_start="16915" e_stop="16875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCTGCTTAAATCTTGTCATGTTGCAGAAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGT</genome_strand>
        <mrna_strand>AGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCTAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAACGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTTGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTCTTCATGTTTGGTGCTCTTTCATCAGAG...................................................................................................AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437495" ref_strand="+" ref_description="SGN-E437495 [cSTA-3-P16]">
      <seq>gacacctgggagccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcgttttaggaataaagaaaatccgatgcaggatcctaaaaataaacaacttgatgtctacatggacattgtggatttcttgaaacccaggtttgtattaatggagaacgtggtggaccttgtcaaattctccaatggtttccttgggcgatatgcattgagcagacttgttgggatgaactaccaagcacggatgggaatgatggcagctggtgcgtatggtcttccacaatttcgtatgcgtgtcttcatgtttggtgctctttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="17954" stop="16719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17654" g_stop="17626" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="96" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17344" g_stop="17019" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="422" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E437495" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17654" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCTGGGAGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATC</genome_strand>
        <mrna_strand>GACACCTGGGAGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCTAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAACGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTTGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTCTTCATGTTTGGTGCTCTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470443" ref_strand="+" ref_description="SGN-E470443 [cSTB-18-A24]">
      <seq>ggaaaagaagctattggatctatattcaggatgtggagcaatgtccacagggttatgcttgggtgccaatagcaaaggcgttaaacttgttactaaatgggctgttgaccttaacaaacatgcatgtgacagtttgagattgaaccacccagagactcaggtgaggaatgagtatgccagtgacttcctatcacttctaaaggagtggatacagctttgtgtctcttgttccttggtaaaaagcagtgttcctccacaccctcatttgaaagtaatagatgaagttgaagaagatgaagaaaatgatgatgagggtgatgattctgatgatgataaagaaggtgaagtatttgaggtcgaagaactattagaagtttgttacggagatcctaaagaaaataacaaacctggactttacttcaaggtccgctggagaggttatggtccagaggaagacacctgggagccaatagatggcttaagtgactgcccgaagaaaatcaaagagtttgtggcgaaaggcttcaaagcaaatcttttgccgttgcctggtgatgttgatgttgtatgcggtggaccaccttgccaaggaatcagtggattcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="18676" stop="16986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18376" g_stop="18283" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18282" i_stop="18165" i_length="118">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18164" g_stop="17835" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="424" r_length="330" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17834" i_stop="17685" i_length="150">
            <donor d_prob="0.947" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17684" g_stop="17626" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="483" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17541" g_stop="17475" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="550" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17344" g_stop="17286" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="609" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E470443" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18376" e_stop="18283"/>
          <exon e_start="18164" e_stop="17835"/>
          <exon e_start="17684" e_stop="17626"/>
          <exon e_start="17541" e_stop="17475"/>
          <exon e_start="17344" e_stop="17286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACTGTATGTTCTTTCCTTCAACTTATTCTATGTTTTGCCAATTTGAACCAGCAGAATATGACTTACTTTCTTGATATTTGATAAGACCTTTAGTCCTGTTAATACAAAATCTTGGATGCAGAAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTCCTAGAAGTTTGTTATGGAGATCCAAAAGAGAATAACAAACCTGGACTTTACTTCAAGGTACTTGACCATTGAGCTTGGAATTCTTTAATTCTTTGGTAGAACACAGATTTATTATGTGGAAAAGCTGAAGTCATTTTATGTTTTTTTTTTCTGTGTGTTTCTGGCACTTGTCATTTTCTGAAATCACTTTGATTACTTTGTGCCTAGGTTCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCG</genome_strand>
        <mrna_strand>GGAAAAGAAGCTATTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT......................................................................................................................AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCAGAGACTCAGGTGAGGAATGAGTATGCCAGTGACTTCCTATCACTTCTAAAGGAGTGGATACAGCTTTGTGTCTCTTGTTCCTTGGTAAAAAGCAGTGTTCCTCCACACCCTCATTTGAAAGTAATAGATGAAGTTGAAGAAGATGAAGAAAATGATGATGAGGGTGATGATTCTGATGATGATAAAGAAGGTGAAGTATTTGAGGTCGAAGAACTATTAGAAGTTTGTTACGGAGATCCTAAAGAAAATAACAAACCTGGACTTTACTTCAAG......................................................................................................................................................GTCCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAG....................................................................................TGACTGCCCGAAGAAAATCAAAGAGTTTGTGGCGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT..................................................................................................................................GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGATTCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472146" ref_strand="+" ref_description="SGN-E472146 [cSTB-27-N21]">
      <seq>ctgtttaggtcaaagaacacaatctggaaaagaagctattggatctatattcaggatgtggagcaatgtccacagggttatgcttgggtgccaatagcaaaggcgttaaacttgttactaaatgggctgttgaccttaacaaacatgcatgtgacagtttgagattgaaccacccagagactcaggtgaggaatgagtatgccagtgacttcctatcacttctaaaggagtggatacagctttgtgtctcttgttccttggtaaaaagcagtgttcctccacaccctcatttgaaagtaatagatgaagttgaagaagatgaagaaaatgatgatgagggtgatgattctgatgatgataaagaaggtgaagtatttgaggtcgaagaactattagaagtttgttacggagatcctaaagaaaataacaaacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="18701" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18401" g_stop="18283" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18282" i_stop="18165" i_length="118">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18164" g_stop="17848" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="436" r_length="317" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E472146" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18401" e_stop="18283"/>
          <exon e_start="18164" e_stop="17848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACTGTATGTTCTTTCCTTCAACTTATTCTATGTTTTGCCAATTTGAACCAGCAGAATATGACTTACTTTCTTGATATTTGATAAGACCTTTAGTCCTGTTAATACAAAATCTTGGATGCAGAAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTCCTAGAAGTTTGTTATGGAGATCCAAAAGAGAATAACAAACCTGG</genome_strand>
        <mrna_strand>CTGTTTAGGTCAAAGAACACAATCTGGAAAAGAAGCTATTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT......................................................................................................................AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCAGAGACTCAGGTGAGGAATGAGTATGCCAGTGACTTCCTATCACTTCTAAAGGAGTGGATACAGCTTTGTGTCTCTTGTTCCTTGGTAAAAAGCAGTGTTCCTCCACACCCTCATTTGAAAGTAATAGATGAAGTTGAAGAAGATGAAGAAAATGATGATGAGGGTGATGATTCTGATGATGATAAAGAAGGTGAAGTATTTGAGGTCGAAGAACTATTAGAAGTTTGTTACGGAGATCCTAAAGAAAATAACAAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473804" ref_strand="+" ref_description="SGN-E473804 [cSTB-33-H16]">
      <seq>ggaaaagaagctattggatctatattcaggatgtggagcaatgtccacagggttatgcttgggtgccaatagcaaaggcgttaaacttgttactaaatgggctgttgaccttaacaaacatgcatgtgacagtttgagattgaaccacccagagactcaggtgaggaatgagtatgccagtgacttcctatcacttctaaaggagtggatacagctttgtgtctcttgttccttggtaaaaagcagtgttcctccacaccctcatttgaaagtaatagatgaagttgaagaagatgaagaaaatgatgatgagggtgatgattctgatgatgataaagaaggtgaagtatttgaggtcgaagaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="18676" stop="17593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18376" g_stop="18283" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18282" i_stop="18165" i_length="118">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18164" g_stop="17892" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="367" r_length="273" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E473804" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18376" e_stop="18283"/>
          <exon e_start="18164" e_stop="17892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACTGTATGTTCTTTCCTTCAACTTATTCTATGTTTTGCCAATTTGAACCAGCAGAATATGACTTACTTTCTTGATATTTGATAAGACCTTTAGTCCTGTTAATACAAAATCTTGGATGCAGAAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTC</genome_strand>
        <mrna_strand>GGAAAAGAAGCTATTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT......................................................................................................................AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCAGAGACTCAGGTGAGGAATGAGTATGCCAGTGACTTCCTATCACTTCTAAAGGAGTGGATACAGCTTTGTGTCTCTTGTTCCTTGGTAAAAAGCAGTGTTCCTCCACACCCTCATTTGAAAGTAATAGATGAAGTTGAAGAAGATGAAGAAAATGATGATGAGGGTGATGATTCTGATGATGATAAAGAAGGTGAAGTATTTGAGGTCGAAGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416340" ref_strand="+" ref_description="SGN-E416340 [STM-22-N16]">
      <seq>gcaagattgtcgaattctttgaagcagttgatggcatgcagtattttacagctcagtggttttatagagctaaggatactgttattaaaagccacgatcagttcattgacaataaacgtgtattcctttctgaaatcaaggatgacaaccctcttgattgccttgtgaccaaactaaagattgttcctgtgccctcaaatgcaacttcacagttcgaggaaaatgtaaaatcaaattgtgatttctactatgacatgaagtacttgcttccatactcttccttcattagcttgcctcctgatactacaagtccagttagttcatcttctactatatcaagtgacattgatgctggtgaggtcaaagaacacaatctggaaaagaagctattggatctatattcaggatgtggagcaatgtccacagggttatgcttgggtgccaatagcaaaggcgttaaacttgttactaaatgggctgttgaccttaacaaacatgcatgtgacagtttgagattgaaccacccagagactcaggtgangaatgagtatgccagtgacttcctatcacttctaaaggagtggatacagctttgtgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="19322" stop="17734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19022" g_stop="18943" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83">
            <donor d_prob="0.793" d_score="0.92"/>
            <acceptor a_prob="0.487" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18859" g_stop="18740" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="200" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18659" g_stop="18560" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="300" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18559" i_stop="18453" i_length="107">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18452" g_stop="18283" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="470" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18282" i_stop="18165" i_length="118">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18164" g_stop="18034" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="601" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E416340" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19022" e_stop="18943"/>
          <exon e_start="18859" e_stop="18740"/>
          <exon e_start="18659" e_stop="18560"/>
          <exon e_start="18452" e_stop="18283"/>
          <exon e_start="18164" e_stop="18034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTCATTAGCTTGCCTCCTGGTATTTATTTTTTGTCGACTCTTTTCAATTATTGTCCAACAGTGTTGGTCCTTTTGTGTTAGTATTCAAGCTTAAACATGCCTAATTGAGAGGTCAATTCTTTTTAGATACTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGACATTGATGCTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACTGTATGTTCTTTCCTTCAACTTATTCTATGTTTTGCCAATTTGAACCAGCAGAATATGACTTACTTTCTTGATATTTGATAAGACCTTTAGTCCTGTTAATACAAAATCTTGGATGCAGAAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTC</genome_strand>
        <mrna_strand>GCAAGATTGTCGAATTCTTTGAAGCAGTTGATGGCATGCAGTATTTTACAGCTCAGTGGTTTTATAGAGCTAAGGATACT...................................................................................GTTATTAAAAGCCACGATCAGTTCATTGACAATAAACGTGTATTCCTTTCTGAAATCAAGGATGACAACCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT................................................................................GCAACTTCACAGTTCGAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTCATTAGCTTGCCTCCTG...........................................................................................................ATACTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGACATTGATGCTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTATTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT......................................................................................................................AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCAGAGACTCAGGTGANGAATGAGTATGCCAGTGACTTCCTATCACTTCTAAAGGAGTGGATACAGCTTTGTGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438666" ref_strand="+" ref_description="SGN-E438666 [cSTA-9-K1]">
      <seq>cgagggccaagattgtcgaattctttgaagcagttgatggcatgcagtattttaccagctcagtggttttatagagctaaggatacctgttattaaaagccacgatcagttcattgacaataaacgtgtattcctttctgaaatcaaggatgacaacccctcttgattgccttgtgaccaaactaaagattgttcctgtgccctcaaatgcaacttcaccagttcgaggaaaatgtaaaatcaaattgtgatttctacctatgacatgaagtaccttgcttccatacctcttccttcattagcttgcctcctgatacctaccagtcccgttagttcatcttctactatatcaagtgaccattgatgctggtgaggtcaaagaacaccaatctggaaaagaagctattggatctatattcaggatgtggagcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="19321" stop="18033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19028" g_stop="18943" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83">
            <donor d_prob="0.793" d_score="0.85"/>
            <acceptor a_prob="0.487" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18859" g_stop="18740" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="209" r_length="121" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18659" g_stop="18560" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="313" r_length="104" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18559" i_stop="18453" i_length="107">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18452" g_stop="18333" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="436" r_length="123" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E438666" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19028" e_stop="18943"/>
          <exon e_start="18859" e_stop="18740"/>
          <exon e_start="18659" e_stop="18560"/>
          <exon e_start="18452" e_stop="18333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTA-CAGCTCAGTGGTTTTACAGAGCTAAGGATA-CTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAA-TCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCA-CAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTA-CTATGACATGAAGTA-CTTGCTTCCATA-CTCTTCCTTCATTAGCTTGCCTCCTGGTATTTATTTTTTGTCGACTCTTTTCAATTATTGTCCAACAGTGTTGGTCCTTTTGTGTTAGTATTCAAGCTTAAACATGCCTAATTGAGAGGTCAATTCTTTTTAGATA-CTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGA-CATTGATGCTGGTGAGGTCAAAGAACA-CAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGT</genome_strand>
        <mrna_strand>CGAGGGCCAAGATTGTCGAATTCTTTGAAGCAGTTGATGGCATGCAGTATTTTACCAGCTCAGTGGTTTTATAGAGCTAAGGATACCT...................................................................................GTTATTAAAAGCCACGATCAGTTCATTGACAATAAACGTGTATTCCTTTCTGAAATCAAGGATGACAACCCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT................................................................................GCAACTTCACCAGTTCGAGGAAAATGTAAAATCAAATTGTGATTTCTACCTATGACATGAAGTACCTTGCTTCCATACCTCTTCCTTCATTAGCTTGCCTCCTG...........................................................................................................ATACCTACCAGTCCCGTTAGTTCATCTTCTACTATATCAAGTGACCATTGATGCTGGTGAGGTCAAAGAACACCAATCTGGAAAAGAAGCTATTGGATCTATATTCAGGATGTGGAGCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738231" ref_strand="+" ref_description="SGN-E738231 [LC12DE01]">
      <seq>ctcttcctcccgccactgtacacactgcacgttcgccgccgccgctgcgacctactacttcatcttttcagatatcccaatgccaagcaaacggaaatcttctccggctacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaagaccagatccagtagtagctcaaccatctgattccgattttgaaccggaacctgttttatcatcaaagaagaaatccacgaggcgagctgcagtaaaggtggaacctttggtggattctgtagctgggagtgattttgtggaagaggaagaagtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttccaaaaggaagcctaagagggctgagaaagttaaagatgaagagtgtgtacttgccggtgaccctgttccggatgcagaagctagactgaagtggcctcatcgctataataaagggaaagaaaatggtaccaagagcttaaatggtcaagatgatccggaccagttaattcaagctaagtgccattttagtcgagcagatgttgatggtcagatatattatctcgaggatgatgcacatgtgaaggctgctgatggtgaggacgattacatttgcaagattgttgaattctttgaagcagttgacggagtgcagtattttacagctcagtggttttacagagctaaggatactgttattaaaagccatgatcagttcattgacaaaaaacgtgtattcctttctgaaatcaaggatgacaatcctcttgattgccttgtgaccaaactaaagattgttcctgtgcccctcaatgcaacttcacagttcaagggaaaatgtaaaatcaaattgtgatttctactatgacatgaagtacttgcttccatactcttccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21748" stop="18276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21448" g_stop="21203" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21202" i_stop="21038" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21037" g_stop="20809" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="475" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20537" g_stop="20500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="513" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20406" g_stop="20307" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="613" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20306" i_stop="19051" i_length="1256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19050" g_stop="18943" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="721" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.487" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18859" g_stop="18740" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="841" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80">
            <donor d_prob="0.706" d_score="0.94"/>
            <acceptor a_prob="0.820" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18659" g_stop="18576" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="926" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E738231" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21448" e_stop="21203"/>
          <exon e_start="21037" e_stop="20809"/>
          <exon e_start="20537" e_stop="20500"/>
          <exon e_start="20406" e_stop="20307"/>
          <exon e_start="19050" e_stop="18943"/>
          <exon e_start="18859" e_stop="18740"/>
          <exon e_start="18659" e_stop="18576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCACAGTTCAA-GGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTC</genome_strand>
        <mrna_strand>CTCTTCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAG.....................................................................................................................................................................GCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT...................................................................................GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCCTCAAT................................................................................GCAACTTCACAGTTCAAGGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739525" ref_strand="+" ref_description="SGN-E739525 [LC17DC01]">
      <seq>cgttaactgcacgttcgccgccgccgctgcgacctactacttcatcttttcagatatcccaatgccaagcaaacggaaatcttctccggctacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaagaccagatccagtagtagctcaaccatctgattccgattttgaaccggaacctgttttatcatcaaagaagaaatccacgagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccaactgttgaaaaggcagaatctggtgtagcttcaccagctgatagagatttcgtatctgagtctgattcggagacgccgagcaagaaatccacgaggcgagctgcagtaaaggtggaacctttggtggattctgtagctgggagtgattttgtggaagaggaagaagtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttccaaaaggaagcctaagagggctgagaaagttaaagatgaagagtgtgtacttgccggtgaccctgttccggatgcagaagctagactgaagtggcctcatcgctataataaagggaaagaaaatggtaccaagagcttaaatggtcaagatgatccggaccagttaattcaagctaagtgccattttagtcgagcagatgttgatggtcagatatattatctcgaggatgatgcacatgtgaaggctgctgatggtgaggacgattacattttgcagattgttgaattctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21725" stop="18701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21432" g_stop="20809" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20537" g_stop="20500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="660" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20406" g_stop="20307" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="760" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20306" i_stop="19051" i_length="1256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19050" g_stop="19001" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="810" r_length="50" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E739525" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21432" e_stop="20809"/>
          <exon e_start="20537" e_stop="20500"/>
          <exon e_start="20406" e_stop="20307"/>
          <exon e_start="19050" e_stop="19001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGA</genome_strand>
        <mrna_strand>CGT-TA-ACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGATGGTGAGGACGATTACATTTTGCAGATTGTTGAATTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487786" ref_strand="+" ref_description="SGN-E487786 [cSTE-26-H11]">
      <seq>ccgccactgtacacactgtacggccgccgccgccgccgccgcgacctactactgcatctcttcagatatcccaatgcctagcaaacggaaatcttctccggcgacaaaaccagagtcttcatccggcagcaggaagtcgaagagactagtagttgaaaggccagatccagtagtagctcaaccagctgattccgattttgaacaggaacctgttttatcatcaaagaagaaatccacaagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccagctgtagaaaaggtagaatctggtgtagcttcaccagctgatagcgatttcgtatctgagtctaattcggcgacgccgagcgagaaatccacgaggcaaactgcagtaaaggtggaacctttggtggattctgtagctgagagtgattttttggaggaggaagatgtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttcaaaaaggaagcctaagagagctgagaaagtgaaagatgaagagtgtacacttgccggtgaccctgttccggatgcagaagctagattgaagtggcctcatcgctataacaaggggaaatcaaatggtaccaagagctttaatggtncagatgatccgggacagtttaattcagctaagtgccattttagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21739" stop="20060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21439" g_stop="20809" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20537" g_stop="20500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="672" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20406" g_stop="20360" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="719" r_length="47" r_score="0.830"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E487786" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21439" e_stop="20809"/>
          <exon e_start="20537" e_stop="20500"/>
          <exon e_start="20406" e_stop="20360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACTGTACACACTGCAC-G-TTC-GCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTC</genome_strand>
        <mrna_strand>CCGCCACTGTACACACTGTACGGCCGCCGCCGCCGCCGCCGCGACCTACTACTGCATCTCTTCAGATATCCCAATGCCTAGCAAACGGAAATCTTCTCCGGCGACAAAACCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTAGTAGTTGAAAGGCCAGATCCAGTAGTAGCTCAACCAGCTGATTCCGATTTTGAACAGGAACCTGTTTTATCATCAAAGAAGAAATCCACAAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAGCTGTAGAAAAGGTAGAATCTGGTGTAGCTTCACCAGCTGATAGCGATTTCGTATCTGAGTCTAATTCGGCGACGCCGAGCGAGAAATCCACGAGGCAAACTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGAGAGTGATTTTTTGGAGGAGGAAGATGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCAAAAAGGAAGCCTAAGAGAGCTGAGAAAGTGAAAGATGAAGAGTGTACACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGATTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AACAAGGGGAAATCAAATGGTACCAAGAGCTTTAATGG.............................................................................................TNCAGATGATCCGGGACAGTTTAATTCAGCTAAGTGCCATTTTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441868" ref_strand="+" ref_description="SGN-E441868 [cSTA-31-O22]">
      <seq>cattctcccgccactgtacacactgtacggccgccgccgccgccgccgcgacctactactgcatctcttcagatatcccaatgcctagcaaacggaaatcttctccggcgacaaaaccagagtcttcatccggcagcaggaagtcgaagagactagtagttgaaaggccagatccagtagtagctcaaccagctgattccgattttgaacaggaacctgttttatcatcaaagaagaaatccacaagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccagctgtagaaaaggtagaatctggtgtagcttcaccagctgatagcgatttcgtatctgagtctaattcggcgacgccgagcgagaaatccacgaggcaaactgcagtaaaggtggaacctttggtggattctgtagctgagagtgattttttggaggaggaagatgtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttcaaaaaggaagcctaagagagctgagaaagtgaaagatgaagagtgtacacttgccggtgaccctgttccggatgcagaagctagattggagtggcctcatcgctataacagggggaaatcaaatggtaccaagagcttaaatggtcaagatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21746" stop="20195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21446" g_stop="20809" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20537" g_stop="20500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="679" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20406" g_stop="20395" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="691" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E441868" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21446" e_stop="20809"/>
          <exon e_start="20537" e_stop="20500"/>
          <exon e_start="20406" e_stop="20395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTCCCGCCACTGTACACACTGCAC-G--TTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCC</genome_strand>
        <mrna_strand>CATTCTCCCGCCACTGTACACACTGTACGGCCGCCGCCGCCGCCGCCGCGACCTACTACTGCATCTCTTCAGATATCCCAATGCCTAGCAAACGGAAATCTTCTCCGGCGACAAAACCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTAGTAGTTGAAAGGCCAGATCCAGTAGTAGCTCAACCAGCTGATTCCGATTTTGAACAGGAACCTGTTTTATCATCAAAGAAGAAATCCACAAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAGCTGTAGAAAAGGTAGAATCTGGTGTAGCTTCACCAGCTGATAGCGATTTCGTATCTGAGTCTAATTCGGCGACGCCGAGCGAGAAATCCACGAGGCAAACTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGAGAGTGATTTTTTGGAGGAGGAAGATGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCAAAAAGGAAGCCTAAGAGAGCTGAGAAAGTGAAAGATGAAGAGTGTACACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGATTGGAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AACAGGGGGAAATCAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427642" ref_strand="+" ref_description="SGN-E427642 [STM-48-H24]">
      <seq>ccgccactgtacacactgtacggccgccgccgccgccgccgcgacctactactgcatctcttcagatatcccaatgcctagcaaacggaaatcttctccggcgacaaaaccagagtcttcatccggcagcaggaagtcgaagagactagtagttgaaaggccagatccagtagtagctcaaccagctgattccgattttgaacaggaacctgttttatcatcaaagaagaaatccacaagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccagctgtagaaaaggtagaatctggtgtagcttcaccagctgatagcgatttcgtatctgagtctaattcggcgacgccgagcgagaaatccacgaggcaaactgcagtaaaggtggaacctttggtggattctgtagctgagagtgattttttggaggaggaagatgtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttcaaaaaggaagcctaagagagctgagaaagtgaaagatgaagagtgtacacttgccggtgaccctgttccggatgcagaagctagattgaagtggcctcatcgctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21739" stop="20509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21439" g_stop="20809" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E427642" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21439" e_stop="20809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACTGTACACACTGCAC-G-TTC-GCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT</genome_strand>
        <mrna_strand>CCGCCACTGTACACACTGTACGGCCGCCGCCGCCGCCGCCGCGACCTACTACTGCATCTCTTCAGATATCCCAATGCCTAGCAAACGGAAATCTTCTCCGGCGACAAAACCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTAGTAGTTGAAAGGCCAGATCCAGTAGTAGCTCAACCAGCTGATTCCGATTTTGAACAGGAACCTGTTTTATCATCAAAGAAGAAATCCACAAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAGCTGTAGAAAAGGTAGAATCTGGTGTAGCTTCACCAGCTGATAGCGATTTCGTATCTGAGTCTAATTCGGCGACGCCGAGCGAGAAATCCACGAGGCAAACTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGAGAGTGATTTTTTGGAGGAGGAAGATGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCAAAAAGGAAGCCTAAGAGAGCTGAGAAAGTGAAAGATGAAGAGTGTACACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGATTGAAGTGGCCTCATCGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557634" ref_strand="+" ref_description="SGN-E557634 [16465]">
      <seq>cggacgccgcgccgccgccgcgacctactactgcatctcttcagatatcccaatgcctaggcaaacggaaatcttctccggcaacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaaggccagatccagtagtagctcaaccagctgattccgattttgaacaggaacctgttttatcatcaacgaagaaatccacgagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccagctgtagaaaaggtagaatctggcgtagcttcacccagctgatagcgatttcgtatctgaggtcaaattcggcgacgccgagcaagaaatccacgaggcaagcctgcagtacaagggtggaacctttggtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="21719" stop="20703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21423" g_stop="21003" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E557634" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21423" e_stop="21003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCC-AAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCA-CCAGCTGATAGAGATTTCGTATCTGA-GTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAG-CTGCAGTA-AA-GGTGGAACCTTTGGTGGATT</genome_strand>
        <mrna_strand>CGGACG-CCG-CGCCGCCGCCGCGACCTACTACTGCATCTCTTCAGATATCCCAATGCCTAGGCAAACGGAAATCTTCTCCGGCAACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGGCCAGATCCAGTAGTAGCTCAACCAGCTGATTCCGATTTTGAACAGGAACCTGTTTTATCATCAACGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAGCTGTAGAAAAGGTAGAATCTGGCGTAGCTTCACCCAGCTGATAGCGATTTCGTATCTGAGGTCAAATTCGGCGACGCCGAGCAAGAAATCCACGAGGCAAGCCTGCAGTACAAGGGTGGAACCTTTGGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312010" ref_strand="+" ref_description="SGN-E312010 [cTOA-16-F8]">
      <seq>aactctttctctctatcaatttgtagatgcatttactggtgatgatatcaattcagccttgagaaaactactttgagtatcctgatattggtttcgtctcttcaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="22299" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22599" g_stop="22624" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24111" g_stop="24479" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="395" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E312010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22599" e_stop="22624"/>
          <exon e_start="24111" e_stop="24479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCTCTCTATCAATTTGTAGGTATGTTTATGGTTTGTTCGTTCATTTTTTAAAAAATATATTCTTCAACTTTTTATTTTTAAACTTAATTGGAATGGAATGTTCTGTTTGGATAGTGTTCTTTTGGTAAAATATATCTGTTTGATTGTTCACTCTATGTGCAAGTTTACATGTTTCTCGATTGAGATCTTTAAAGGAAATGAAGCAAACACTATTCCAATTCACAGTAAACAAGATTCATTGATTGTATTATTACTCTAATAAACTGAAATAAGGAATATAAGCATTACTATTATTTATTGATTGGAAGGATACAAGGATAAAGAAATTAGATTAGAAAGAAGATGAAAATCCCAAAACCTTTGTCACGTGCTTCCGTACTCAACCTGGATCCCAAGTAAGTCCCTAGTTCGAATAACTGGTCAATAAGAATTATGTGAGTTGTCCATGTCATTTATATACAAAAATTAAACTTGGAAAGGGATTTCTGAGATCCCCTGATGAAGATATCAGCGATGGGAATTCGGCAACAATTTTGTTGGGCGTGCAAACAAAGTGGTAGCTTAAAAAGACTGGAAAGCTACATATGAGGTGTGTGAGGCCTTTTGAAAAAAAACCATGTGGATTTGGCCAAAGCGGACAATATTACACCATGTTAAAAGCTTCATTCAGTTGATTTAGCCAACAAAACTTAAGGTGGCTATGGTTTTGATCTTCTTCCCTAACTGCATCTCCTTGACTCGTACTGCCAACACAGCTGCTTTTCCTTTTAGCTACATATACCACTCTTCATCATCTTTCCCTGCCTCACTGAATGTTGATCTGGTTGTTTTGCTTCTGTTTGTTTCTAAACTGAAGTCCTCTGAGTGAAGCGCTCAACAGTAATACATACCTCTATGCATAGAAATGATATAACATTCTGAAATGATTTAAAGATTACATGAAAATGCTTTTAATGCTTATTGTTTTTATTTATTGATCTTATGAAATGTAACACTTATCGTATATCATGAATTTTATGTATCCCTTAAAGTATCGTTCCAACCTTATCGAAAGGAGACAGCGATACTTAGGGGGGTACAATTTTTTATATTGTACCCAGCCCCTTCTTCCCGCGGGCATATACATATTATCAGTTTATTCAGTCCCCTGCAGTTTATGTCACTTGGCATGATTCCATGAAGTATGAGCCCCTTGTGTTGGGAGAACTTCTAGATACTCGTGATATAGACACTTTGTGGTGTTTGAATTTGGGATGTTTTCCAATGAAGTTTTTTCCAAAACAACTCTCATGTCTATTTCAAAAACCAAACTTGTTATTGGAAGACAATCCAAAAACGTTGATGGAGTACCAGTAGCAAAAAATTCTGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCA</genome_strand>
        <mrna_strand>AACTCTTTCTCTCTATCAATTTGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339813" ref_strand="+" ref_description="SGN-E339813 [cTOE-16-P20]">
      <seq>tatcaatttgtaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgaatctcaagtcactcaacaatgtgaatctggagctaggattggttgctctatcgcagcctcagacaaatgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="23883" stop="24867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23972" g_stop="23972" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23973" i_stop="24110" i_length="138">
            <donor d_prob="0.507" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24111" g_stop="24122" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="13" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24123" i_stop="24189" i_length="67">
            <donor d_prob="0.808" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24190" g_stop="24567" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="391" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E339813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23972" e_stop="23972"/>
          <exon e_start="24111" e_stop="24122"/>
          <exon e_start="24190" e_stop="24567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</genome_strand>
        <mrna_strand>T..........................................................................................................................................ATCAATTTGTAG...................................................................GACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615559" ref_strand="+" ref_description="SGN-E615559 [65359]">
      <seq>tcgaggtcccatcaaggctggcccacaagaagaaacagctgggcgattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgagtctcaagtcactcaacaatgtgaatctggggctaggattggttgctctatcgcagcttcagacaaatgtaaaactccttggtggaaatcattcactggcagtgcttccaatcaagactttgcagagagggcgagatgcgaagaacgtgaaatggaggcttgccttgaagcagcaaaggggaagtgcaatgaatttgcaaagcagaagtgcttcccagcatttcgtgatgcaaggattgctgtaaaaggattgagtcccaaggtgaacaaaaaagagttatccaggctaatttcttgggtgaacttaggggagaattgtcagatagctgatctttggagattagagaggccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="24092" stop="25148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24392" g_stop="24848" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E615559" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24392" e_stop="24848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAGAAAAAAGAGTTATCCAGGCTTATTTCTTGGGTGAAGTTAGGGGAGAATTGTCAGATAGCTGATCTTTGGAGATTAGAGAGGCCTTGG</genome_strand>
        <mrna_strand>TCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGCTGGGCGATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAGTCTCAAGTCACTCAACAATGTGAATCTGGGGCTAGGATTGGTTGCTCTATCGCAGCTTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAAGGGGAAGTGCAATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCAAGGATTGCTGTAAAAGGATTGAGTCCCAAGGTGAACAAAAAAGAGTTATCCAGGCTAATTTCTTGGGTGAACTTAGGGGAGAATTGTCAGATAGCTGATCTTTGGAGATTAGAGAGGCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614510" ref_strand="+" ref_description="SGN-E614510 [64297]">
      <seq>tcgaggtcccatcaatggctggcccacaagtaagaaacagctgggcgattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgagtctcaagtcactcaacaatgtgaatctggggctaggattggttgctctatcgcagcttcagacaaatgtcaaactccttggtggaaatcattcactggcagtgcttccaagtcaaggactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="24092" stop="24916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24392" g_stop="24616" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E614510" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24392" e_stop="24616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGGTCCCATCAA-GGCTGGCCCACAAG-AAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAA-TCAA-GACTTTGC</genome_strand>
        <mrna_strand>TCGAGGTCCCATCAATGGCTGGCCCACAAGTAAGAAACAGCTGGGCGATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAGTCTCAAGTCACTCAACAATGTGAATCTGGGGCTAGGATTGGTTGCTCTATCGCAGCTTCAGACAAATGTCAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAAGTCAAGGACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314026" ref_strand="+" ref_description="SGN-E314026 [cTOA-19-P4]">
      <seq>ttttgttgatatttcttttggatgtttcttcaacaaaccctagcatcaagacctctttaatcttactgctcattcatctttctatttgtttcgatcgctgttgaaaacttgttgaagaattcaaacgatcaattttgtattgatgatggtcactttgggttttgttctacttgcattgtttgtaaagaacgctaatgcctgtaggtgttgaaaaaccagcagccagcgggaagggaagaagtttcgtaaagacctgtgctgctaaggcaaaagcagaagagttgaagaggaaatgggggatcagagcggtgggttgagtgctaataacaaaggaactgagcaagatgatgatggtaaaaactctcctatccctaaaaaggtgaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaagggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="26387" stop="28695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26687" g_stop="27065" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28092" g_stop="28220" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="508" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28331" g_stop="28395" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="573" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E314026" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26687" e_stop="27065"/>
          <exon e_start="28092" e_stop="28220"/>
          <exon e_start="28331" e_stop="28395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAGGTGGGTTCTTTGTGATTTCATTGTTTTTTTTGTATACATGCTTAAAGCCATCAACCATAAGGTGTAAACCTGAACAGAGCTGAGGCAATGGCCGCTGTCGATGATACAAGATTTCAATCTAGGGGTTCCGAAAAAAAAAGTTGTAGTCCTTGGTATTTGAACTTAGGAACCCCTAAACCACTAAGCCATCCGCTAGTCTATCAGAAGATTCAAAATCTATATGATACGTAAATAAAAAATAACCACTGTGCAAATGTTGAGGGAATTCGGATGAACACCCTCACGCCCTTGGCTACCTCCTACCAATATAGGTACATGATGACTTTGCTTTTACCAAGACTTAGACAAATGAGAAGAAGTCAAGTAGCTTTTTCGTATATTTGAACCTTGGTCTCCAAGTTTTTAGTCCACTTCATTGACCTCTTTATGACAAGCTTGGGTGCTAAATTCTTAATGTTGTCGACTCGTGGCACGTGACGTGTAATATAGCTTGTCAAAATTATTTTATCGTTCGAAACTTTATAAATTAATTAACTATGCCTCATTCCATAATTAGCAGGAACCAGCTAATGATACATTGGTGTCCGTTGGTTAGTTAAAGTTTGACTATTTGTATGATGGCTGTCAACCTATTGCAACCCTCCTCCTACATGTGAATCTCAAATAGACCGATTAATTATTTTATTTAGCATGTTCTTTTATATGATTGAGTGGTCAAAGAAAAAACTTTTCCAATTAGGAATCATTATCATCAAATTCCAAACATAGTATTATGTCGTTCTCTTGTGCATTGTTTTGATTATATTAGCCACTCTAGTTAGATTAGTTATAAGCTTGTGATTTTATGAACTTAAGGAATGAAGATAGAAGCATCATATTTGTATGAAGGTTACTTATGAATTGAATTGCTTGCATTTGGATTTGCTGTAATTGCAACTTTAACCATTTTCTGCTTTGATGAATCCAGCAGGGATTTAACTTGTAAAGTGAACTTATCTTTTGTTTCTGGTTGAATTTGACTTTCAGGTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCA</genome_strand>
        <mrna_strand>TTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAAGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329611" ref_strand="+" ref_description="SGN-E329611 [cTOD-3-M21]">
      <seq>ttttggatgtttcttcaacaaaccctagcatcaagacctctttaatcttactgctcattcatctttctatttgtttcgatcgctgttgaaaacttgttgaagaattcaaacgatcaattttgtattgatgatggtcactttgggttttgttctacttgcattgtttgtaaagaacgctaatgcctgtaggtgttgaaaaaccagcagccagcgggaagggaagaagtttcgtaaagacctgtgctgctaaggcaaaagcagaagagttgaagaggaaatgggggatcagagcggtgggttgagtgctaataacaaaggaactgagcaagatgatgatggtaaaaactctcctatccctaaaaaggtgaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="26402" stop="28498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26702" g_stop="27065" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28092" g_stop="28198" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="471" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E329611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26702" e_stop="27065"/>
          <exon e_start="28092" e_stop="28198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAGGTGGGTTCTTTGTGATTTCATTGTTTTTTTTGTATACATGCTTAAAGCCATCAACCATAAGGTGTAAACCTGAACAGAGCTGAGGCAATGGCCGCTGTCGATGATACAAGATTTCAATCTAGGGGTTCCGAAAAAAAAAGTTGTAGTCCTTGGTATTTGAACTTAGGAACCCCTAAACCACTAAGCCATCCGCTAGTCTATCAGAAGATTCAAAATCTATATGATACGTAAATAAAAAATAACCACTGTGCAAATGTTGAGGGAATTCGGATGAACACCCTCACGCCCTTGGCTACCTCCTACCAATATAGGTACATGATGACTTTGCTTTTACCAAGACTTAGACAAATGAGAAGAAGTCAAGTAGCTTTTTCGTATATTTGAACCTTGGTCTCCAAGTTTTTAGTCCACTTCATTGACCTCTTTATGACAAGCTTGGGTGCTAAATTCTTAATGTTGTCGACTCGTGGCACGTGACGTGTAATATAGCTTGTCAAAATTATTTTATCGTTCGAAACTTTATAAATTAATTAACTATGCCTCATTCCATAATTAGCAGGAACCAGCTAATGATACATTGGTGTCCGTTGGTTAGTTAAAGTTTGACTATTTGTATGATGGCTGTCAACCTATTGCAACCCTCCTCCTACATGTGAATCTCAAATAGACCGATTAATTATTTTATTTAGCATGTTCTTTTATATGATTGAGTGGTCAAAGAAAAAACTTTTCCAATTAGGAATCATTATCATCAAATTCCAAACATAGTATTATGTCGTTCTCTTGTGCATTGTTTTGATTATATTAGCCACTCTAGTTAGATTAGTTATAAGCTTGTGATTTTATGAACTTAAGGAATGAAGATAGAAGCATCATATTTGTATGAAGGTTACTTATGAATTGAATTGCTTGCATTTGGATTTGCTGTAATTGCAACTTTAACCATTTTCTGCTTTGATGAATCCAGCAGGGATTTAACTTGTAAAGTGAACTTATCTTTTGTTTCTGGTTGAATTTGACTTTCAGGTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTC</genome_strand>
        <mrna_strand>TTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485133" ref_strand="+" ref_description="SGN-E485133 [cSTE-16-N17]">
      <seq>caaaatctcttcaactcttacaattcatccatctttctgtttttgctcgatttgtttcgattgctattgaaaacttgttgaagaattcaaatgatcaattttgaaggatgatggtcactttgggttttgttctacttgcattggttgtaaagaacgctaatgccagtaggtgttgaaaaaccagcagcgggaagggggaaaagtttcgtaaagacccgtgccgctaaggcaaaagcaaaagcagaggcagaagaggaaatgggggatcaaagtggtgggttgagtgctaataacaaaggaactgagcaagacgatgatggtaaaaactctcctatccctaagaaggtgaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtggttttggtcaggtctttttgggtcgtcgtctttccggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcccagcgtgcattataaagggagggtaggagactattacataatggttatggacatgctanggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="26467" stop="30971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26770" g_stop="27065" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="345" r_length="296" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28092" g_stop="28220" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="474" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28331" g_stop="28404" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="548" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28490" g_stop="28559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="618" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862">
            <donor d_prob="0.625" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30422" g_stop="30477" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="674" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30633" g_stop="30671" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="713" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E485133" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26770" e_stop="27065"/>
          <exon e_start="28092" e_stop="28220"/>
          <exon e_start="28331" e_stop="28404"/>
          <exon e_start="28490" e_stop="28559"/>
          <exon e_start="30422" e_stop="30477"/>
          <exon e_start="30633" e_stop="30671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGC---AGAAGA-GTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAGGTGGGTTCTTTGTGATTTCATTGTTTTTTTTGTATACATGCTTAAAGCCATCAACCATAAGGTGTAAACCTGAACAGAGCTGAGGCAATGGCCGCTGTCGATGATACAAGATTTCAATCTAGGGGTTCCGAAAAAAAAAGTTGTAGTCCTTGGTATTTGAACTTAGGAACCCCTAAACCACTAAGCCATCCGCTAGTCTATCAGAAGATTCAAAATCTATATGATACGTAAATAAAAAATAACCACTGTGCAAATGTTGAGGGAATTCGGATGAACACCCTCACGCCCTTGGCTACCTCCTACCAATATAGGTACATGATGACTTTGCTTTTACCAAGACTTAGACAAATGAGAAGAAGTCAAGTAGCTTTTTCGTATATTTGAACCTTGGTCTCCAAGTTTTTAGTCCACTTCATTGACCTCTTTATGACAAGCTTGGGTGCTAAATTCTTAATGTTGTCGACTCGTGGCACGTGACGTGTAATATAGCTTGTCAAAATTATTTTATCGTTCGAAACTTTATAAATTAATTAACTATGCCTCATTCCATAATTAGCAGGAACCAGCTAATGATACATTGGTGTCCGTTGGTTAGTTAAAGTTTGACTATTTGTATGATGGCTGTCAACCTATTGCAACCCTCCTCCTACATGTGAATCTCAAATAGACCGATTAATTATTTTATTTAGCATGTTCTTTTATATGATTGAGTGGTCAAAGAAAAAACTTTTCCAATTAGGAATCATTATCATCAAATTCCAAACATAGTATTATGTCGTTCTCTTGTGCATTGTTTTGATTATATTAGCCACTCTAGTTAGATTAGTTATAAGCTTGTGATTTTATGAACTTAAGGAATGAAGATAGAAGCATCATATTTGTATGAAGGTTACTTATGAATTGAATTGCTTGCATTTGGATTTGCTGTAATTGCAACTTTAACCATTTTCTGCTTTGATGAATCCAGCAGGGATTTAACTTGTAAAGTGAACTTATCTTTTGTTTCTGGTTGAATTTGACTTTCAGGTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTC</genome_strand>
        <mrna_strand>ATTTGTTTCGATTGCTATTGAAAACTTGTTGAAGAATTCAAATGATCAATTTTG-AAGGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGGTTGTAAAGAACGCTAATGCCAGTAGGTGTTGAAAAACCAGCAG-C-G-GGAAGGGGGAAAAGTTTCGTAAAGACCCGTGCCGCTAAGGCAAAAGCAAAAGCAGAGGCAGAAGAGGAAATGGGGGATCAAAGTGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGACGATGATGGTAAAAACTCTCCTATCCCTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGTTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCCGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCCAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACATAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTANGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331221" ref_strand="+" ref_description="SGN-E331221 [cTOD-6-A12]">
      <seq>ttttgtattgatgatggtcactttgggttttgttctacttgcattgtttgtaaacaacgctaatgcctgtaggtgttgaaaaaccagcagccagcgggaagggaagaagtttcgtaaagacctgtgctgctaaggcaaaagcagaagagttgaagaggaaatgggggatcatagcggtgggttgagtgctaataacaaaggaactgagcaagatgatgatggtaaaaactctcctatccctaaaaaggtgaaagtaggaatgtcgccagtttatcatgttgaaaggaagttaggtaaaggtgggtttggtcatgtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="26519" stop="28707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26819" g_stop="27065" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28092" g_stop="28220" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="376" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28331" g_stop="28404" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="450" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28490" g_stop="28497" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="458" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E331221" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26819" e_stop="27065"/>
          <exon e_start="28092" e_stop="28220"/>
          <exon e_start="28331" e_stop="28404"/>
          <exon e_start="28490" e_stop="28497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAGGTGGGTTCTTTGTGATTTCATTGTTTTTTTTGTATACATGCTTAAAGCCATCAACCATAAGGTGTAAACCTGAACAGAGCTGAGGCAATGGCCGCTGTCGATGATACAAGATTTCAATCTAGGGGTTCCGAAAAAAAAAGTTGTAGTCCTTGGTATTTGAACTTAGGAACCCCTAAACCACTAAGCCATCCGCTAGTCTATCAGAAGATTCAAAATCTATATGATACGTAAATAAAAAATAACCACTGTGCAAATGTTGAGGGAATTCGGATGAACACCCTCACGCCCTTGGCTACCTCCTACCAATATAGGTACATGATGACTTTGCTTTTACCAAGACTTAGACAAATGAGAAGAAGTCAAGTAGCTTTTTCGTATATTTGAACCTTGGTCTCCAAGTTTTTAGTCCACTTCATTGACCTCTTTATGACAAGCTTGGGTGCTAAATTCTTAATGTTGTCGACTCGTGGCACGTGACGTGTAATATAGCTTGTCAAAATTATTTTATCGTTCGAAACTTTATAAATTAATTAACTATGCCTCATTCCATAATTAGCAGGAACCAGCTAATGATACATTGGTGTCCGTTGGTTAGTTAAAGTTTGACTATTTGTATGATGGCTGTCAACCTATTGCAACCCTCCTCCTACATGTGAATCTCAAATAGACCGATTAATTATTTTATTTAGCATGTTCTTTTATATGATTGAGTGGTCAAAGAAAAAACTTTTCCAATTAGGAATCATTATCATCAAATTCCAAACATAGTATTATGTCGTTCTCTTGTGCATTGTTTTGATTATATTAGCCACTCTAGTTAGATTAGTTATAAGCTTGTGATTTTATGAACTTAAGGAATGAAGATAGAAGCATCATATTTGTATGAAGGTTACTTATGAATTGAATTGCTTGCATTTGGATTTGCTGTAATTGCAACTTTAACCATTTTCTGCTTTGATGAATCCAGCAGGGATTTAACTTGTAAAGTGAACTTATCTTTTGTTTCTGGTTGAATTTGACTTTCAGGTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTG</genome_strand>
        <mrna_strand>TTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAACAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCATAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTAGGAATGTCGCCAGTTTATCATGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCATGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368937" ref_strand="+" ref_description="SGN-E368937 [TUS-25-F5]">
      <seq>gaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagcgtgcattataaagggagggtaggagactattacgtaatggttatggacatgctagggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactctgcaggagaagaagttgttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="27794" stop="31547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28094" g_stop="28220" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28331" g_stop="28404" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28490" g_stop="28559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="271" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30422" g_stop="30477" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="327" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30633" g_stop="30704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="399" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30852" g_stop="30946" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="494" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31030" g_stop="31096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="561" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31183" g_stop="31247" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="626" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E368937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28094" e_stop="28220"/>
          <exon e_start="28331" e_stop="28404"/>
          <exon e_start="28490" e_stop="28559"/>
          <exon e_start="30422" e_stop="30477"/>
          <exon e_start="30633" e_stop="30704"/>
          <exon e_start="30852" e_stop="30946"/>
          <exon e_start="31030" e_stop="31096"/>
          <exon e_start="31183" e_stop="31247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATC</genome_strand>
        <mrna_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249027" ref_strand="+" ref_description="SGN-E249027 [cLEF-49-C22]">
      <seq>gaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagcgtgcattataaagggagggtaggagactattacgtaatggttatggacatgctagggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactctgcaggagaagaagttgttccttgtcgacttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="27794" stop="31243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28094" g_stop="28220" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28331" g_stop="28404" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28490" g_stop="28559" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="271" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30422" g_stop="30477" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="327" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30633" g_stop="30704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="399" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30852" g_stop="30943" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E249027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28094" e_stop="28220"/>
          <exon e_start="28331" e_stop="28404"/>
          <exon e_start="28490" e_stop="28559"/>
          <exon e_start="30422" e_stop="30477"/>
          <exon e_start="30633" e_stop="30704"/>
          <exon e_start="30852" e_stop="30943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGAC</genome_strand>
        <mrna_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473244" ref_strand="+" ref_description="SGN-E473244 [cSTB-31-N21]">
      <seq>tggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactccgcaggagaagaagttgttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagacgcaggttgccatggcaaggatttcagggagataacaaatcgtgtttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30329" stop="31819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30458" g_stop="30477" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30633" g_stop="30704" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30852" g_stop="30946" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="187" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31030" g_stop="31096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="254" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31183" g_stop="31312" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31422" g_stop="31519" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="482" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E473244" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30458" e_stop="30477"/>
          <exon e_start="30633" e_stop="30704"/>
          <exon e_start="30852" e_stop="30946"/>
          <exon e_start="31030" e_stop="31096"/>
          <exon e_start="31183" e_stop="31312"/>
          <exon e_start="31422" e_stop="31519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGA</genome_strand>
        <mrna_strand>TGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCCGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGACGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTGTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248014" ref_strand="+" ref_description="SGN-E248014 [cLEF-47-E24]">
      <seq>tttttgcttggtcagccatcaactctgcaggagaagaaggggttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30583" stop="31928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30883" g_stop="30946" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31030" g_stop="31096" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="131" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31183" g_stop="31312" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="261" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31422" g_stop="31628" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="468" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E248014" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30883" e_stop="30946"/>
          <exon e_start="31030" e_stop="31096"/>
          <exon e_start="31183" e_stop="31312"/>
          <exon e_start="31422" e_stop="31628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGAT</genome_strand>
        <mrna_strand>TTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGGGGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264944" ref_strand="+" ref_description="SGN-E264944 [cLEI-10-H1]">
      <seq>tttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctataaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30878" stop="34143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31092" g_stop="31096" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31183" g_stop="31312" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="135" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="354" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="491" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33757" g_stop="33843" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="578" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E264944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31092" e_stop="31096"/>
          <exon e_start="31183" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATC</genome_strand>
        <mrna_strand>TTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTATAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214978" ref_strand="+" ref_description="SGN-E214978 [cLEC-78-J14]">
      <seq>ctgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctaaaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30888" stop="32161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31188" g_stop="31312" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="344" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31861" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="477" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E214978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31188" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAAC</genome_strand>
        <mrna_strand>CTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAAAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376057" ref_strand="+" ref_description="SGN-E376057 [TUS-40-I24]">
      <seq>ttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattatgatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaaagttatgagctatcacaatcattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30891" stop="34225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31191" g_stop="31312" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="478" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33757" g_stop="33925" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="647" r_length="169" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E376057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31191" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTG</genome_strand>
        <mrna_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATGATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAAGTTATGAGCTATCACAATCATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257265" ref_strand="+" ref_description="SGN-E257265 [cLEG-46-O11]">
      <seq>ttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttancatgctaggaagcccatgaaacagaggtaccattantatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30891" stop="34127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31191" g_stop="31312" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="478" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33757" g_stop="33827" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="549" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E257265" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31191" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACA</genome_strand>
        <mrna_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTANCATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTANTATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264200" ref_strand="+" ref_description="SGN-E264200 [cLEG-64-P10]">
      <seq>ttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagagggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30891" stop="34091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31191" g_stop="31312" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="479" r_length="138" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33757" g_stop="33791" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="514" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E264200" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31191" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGA-GGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAG</genome_strand>
        <mrna_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324022" ref_strand="+" ref_description="SGN-E324022 [cTOC-3-A21]">
      <seq>ttcggtatgcttgtgctcatgcacacttgggaaggagtgccactggaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgcttcgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataacgcctatcaacactgctggtgcgcacaccattcttcaagttggccaaaagcgggggagattaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30891" stop="32066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31191" g_stop="31312" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31766" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="380" r_length="39" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E324022" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31191" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATT-AAATGT</genome_strand>
        <mrna_strand>TTCGGTATGCTTGTGCTCATGCACACTTGGGAAGGAGTGCCACTGGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTCGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAACGCCTATCAACACTGCTGGTGCGCACACC........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264236" ref_strand="+" ref_description="SGN-E264236 [cLEG-70-O20]">
      <seq>cggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30893" stop="31908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31193" g_stop="31312" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31608" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="307" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E264236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31193" e_stop="31312"/>
          <exon e_start="31422" e_stop="31608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTA</genome_strand>
        <mrna_strand>CGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707982" ref_strand="+" ref_description="SGN-E707982 [FA34CA08]">
      <seq>ccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="30995" stop="34956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31295" g_stop="31312" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31422" g_stop="31640" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="237" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="374" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="549" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="640" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="798" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E707982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31295" e_stop="31312"/>
          <exon e_start="31422" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</genome_strand>
        <mrna_strand>CCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251006" ref_strand="+" ref_description="SGN-E251006 [cLEG-17-O1]">
      <seq>gtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31136" stop="34545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31436" g_stop="31640" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="342" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="517" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34200" g_stop="34245" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="563" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E251006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31436" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTC</genome_strand>
        <mrna_strand>GTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261128" ref_strand="+" ref_description="SGN-E261128 [cLEG-65-F9]">
      <seq>atggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagcccaagttatgagctatcaccatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31158" stop="34223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31458" g_stop="31640" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="320" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33923" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="487" r_length="167" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E261128" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31458" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCT</genome_strand>
        <mrna_strand>ATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCCAAGTTATGAGCTATCACCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413981" ref_strand="+" ref_description="SGN-E413981 [STM-18-B12]">
      <seq>gttaatctctttatttgggagcttgcttggaccagatcctactataaggccaattaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatatagaggaggatgaagagcagcctagaaagaaggttcgcattggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagagcatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattgtgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgcaggtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgcaattcaggtgtcagtaaccaggtagtggagcttgattttctttatcctagtgaaggcattcataaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31265" stop="35864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31565" g_stop="31640" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="213" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="388" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="479" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="637" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35518" g_stop="35564" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="684" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E413981" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31565" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACG</genome_strand>
        <mrna_strand>GTTAATCTCTTTATTTGGGAGCTTGCTTGGACCAGATCCTACTATAAGGCCAATTAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATATAGAGGAGGATGAAGAGCAGCCTAGAAAGAAGGTTCGCATTGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTGTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCAGGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGCAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCTAGTGAAGGCATTCATAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414052" ref_strand="+" ref_description="SGN-E414052 [STM-18-J10]">
      <seq>gttaatctctttatttgggagcttgcttggaccagatcctactataaggccaattaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatatagaggaggatgaagagcagcctagaaagaaggttcgcattggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagagcatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattgtgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgcacgtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaagtgagcggttgttatgtctcgcaattcacgtgtcagtaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31265" stop="34950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31565" g_stop="31640" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="213" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="388" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="479" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34495" g_stop="34650" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="635" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E414052" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31565" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACC</genome_strand>
        <mrna_strand>GTTAATCTCTTTATTTGGGAGCTTGCTTGGACCAGATCCTACTATAAGGCCAATTAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATATAGAGGAGGATGAAGAGCAGCCTAGAAAGAAGGTTCGCATTGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTGTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCACGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAAGTGAGCGGTTGTTATGTCTCGCAATTCACGTGTCAGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473137" ref_strand="+" ref_description="SGN-E473137 [cSTB-31-C8]">
      <seq>gttaatctctttatttgggagcttgcttggaccacatcctactataaggccaattaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatatagaggaggatgaagagcagcctaaaaagaagggtcgcattggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctatcatagcatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttggtccgaattgtgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31265" stop="34225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31565" g_stop="31640" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31729" g_stop="31865" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="213" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33757" g_stop="33925" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="382" r_length="169" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E473137" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31565" e_stop="31640"/>
          <exon e_start="31729" e_stop="31865"/>
          <exon e_start="33757" e_stop="33925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAGGTGGTATTTTACATGTCTCACCAACTTGCTTATTTACTTCGACTTCCATGTGTTGGCTATATATAATCTCATCATGCTATTATTGCAGATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTG</genome_strand>
        <mrna_strand>GTTAATCTCTTTATTTGGGAGCTTGCTTGGACCACATCCTACTATAAGGCCAATTAACACTGATGGTGCCCAAAAG........................................................................................ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATATAGAGGAGGATGAAGAGCAGCCTAAAAAGAAGGGTCGCATTGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTATCATAGCATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGGTCCGAATTGTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401594" ref_strand="+" ref_description="SGN-E401594 [PPC-4-P7]">
      <seq>tggccaaaagcgggggagattaaatatagaggaggatgaagagcagcctagaaagaaggttcgcattggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagagcatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattgtgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgcaggtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggntggtatgtctcgcaattcaggtgtcagtaaccaggtagtggagcttgattttctttatcctagtgaaggcattcataaacgatgggacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31440" stop="35874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31740" g_stop="31865" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="301" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="392" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="550" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35518" g_stop="35574" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="607" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E401594" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31740" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAAT</genome_strand>
        <mrna_strand>TGGCCAAAAGCGGGGGAGATTAAATATAGAGGAGGATGAAGAGCAGCCTAGAAAGAAGGTTCGCATTGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTGTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCAGGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGNTGGTATGTCTCGCAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCTAGTGAAGGCATTCATAAACGATGGGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411926" ref_strand="+" ref_description="SGN-E411926 [STM-15-B9]">
      <seq>taaatatagaggaggatgaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagaacatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattatgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgctggtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacttccatggcaactgctggaagtaggtgggcggttgttatgtctcgcaattcaggtgtcagtaaccaggtagtggagcttgattttctttatcctagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31460" stop="35908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31760" g_stop="31865" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="281" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="372" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="530" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35518" g_stop="35608" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="621" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E411926" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31760" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAG</genome_strand>
        <mrna_strand>TAAATATAGAGGAGGATGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAACATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTATGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACTTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGCAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCTAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477392" ref_strand="+" ref_description="SGN-E477392 [cSTB-48-G7]">
      <seq>taaatatagaggaggatgaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagaacatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattatgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgctggtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacttccatggcaactgctggaagtaggtgggcggttgttatgtctcgcaattcaggtgtcagtaaccaggtagtggagcttgattttctttatcctagtgaaggcattcataaacgatgggacaatggttatcgtattacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31460" stop="35892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31760" g_stop="31865" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="281" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="372" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="530" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35518" g_stop="35592" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="605" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E477392" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31760" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCA</genome_strand>
        <mrna_strand>TAAATATAGAGGAGGATGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAACATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTATGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACTTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGCAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCTAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469833" ref_strand="+" ref_description="SGN-E469833 [cSTB-14-M20]">
      <seq>taaatatagaggttgtttaatagcagcctataaagaaggttcgcgggggagttcctgcatcacagtggatttcgatttacaatgccaggaagcccatgaaacagaggtaccattataatgtaacagatacaaggctagcagaacatgtggagaaagggactgaagatggattatatataagttgtgtggcatcttgttccgaattatgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcaccattattcttgcacaaggagtggattatggaacagtgggagaagaactattatattagttctcttgctggtgccaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacttccatggcaactgctggaagtaggtgggcggttgttatgtctcgcaattcaagtgtcagtaaccaggtagtggagcttgattttctttatcctagtgaaggcattcataaaccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31507" stop="35869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31760" g_stop="31865" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="281" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="372" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="530" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35518" g_stop="35569" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="582" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E469833" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31760" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGG</genome_strand>
        <mrna_strand>TAAATATAGAGGTTGTTTAATAGCAGCCTATAAAGAAGGTTCGCGGGGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCCAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGGCTAGCAGAACATGTGGAGAAAGGGACTGAAGATGGATTATATATAAGTTGTGTGGCATCTTGTTCCGAATTATGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACCATTATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGATTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCCACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACTTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGCAATTCAAGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCTAGTGAAGGCATTCATAAACCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273842" ref_strand="+" ref_description="SGN-E273842 [cLEN-7-G17]">
      <seq>gaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31477" stop="34935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31777" g_stop="31865" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="264" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="355" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34635" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="496" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E273842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31777" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATT</genome_strand>
        <mrna_strand>GAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277070" ref_strand="+" ref_description="SGN-E277070 [cLEN-22-P11]">
      <seq>tagaaagaatgttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="31488" stop="34956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31788" g_stop="31865" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33757" g_stop="33931" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="253" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34200" g_stop="34290" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="344" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="502" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E277070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31788" e_stop="31865"/>
          <exon e_start="33757" e_stop="33931"/>
          <exon e_start="34200" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAGGTGGAAATTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</genome_strand>
        <mrna_strand>TAGAAAGAATGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368936" ref_strand="+" ref_description="SGN-E368936 [TUS-25-F5](-)">
      <seq>gaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttgattttctttatccaagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcacaaaattacaaatctatgaatcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="33926" stop="36523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34226" g_stop="34290" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="223" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35518" g_stop="35706" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="412" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35966" g_stop="36233" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="680" r_length="268" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E368936" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34226" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35706"/>
          <exon e_start="35966" e_stop="36233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGT</genome_strand>
        <mrna_strand>GAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376056" ref_strand="+" ref_description="SGN-E376056 [TUS-40-I24](-)">
      <seq>cttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttgattttctttatccaagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcacaaaattacaaatctatgaatcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="33945" stop="36523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34245" g_stop="34290" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34495" g_stop="34652" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="204" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35518" g_stop="35706" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="393" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35966" g_stop="36233" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="661" r_length="268" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E376056" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34245" e_stop="34290"/>
          <exon e_start="34495" e_stop="34652"/>
          <exon e_start="35518" e_stop="35706"/>
          <exon e_start="35966" e_stop="36233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGT</genome_strand>
        <mrna_strand>CTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224859" ref_strand="+" ref_description="SGN-E224859 [cLEL-27-A3](-)">
      <seq>gctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcccaaaattacaaatctatgaatcctttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="35296" stop="71981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35596" g_stop="35706" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35966" g_stop="36238" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="385" r_length="274" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E224859" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35596" e_stop="35706"/>
          <exon e_start="35966" e_stop="36238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGC-AAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGTTCGGT</genome_strand>
        <mrna_strand>GCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCCCAAAATTACAAATCTATGAATCCTTTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224359" ref_strand="+" ref_description="SGN-E224359 [cLEL-27-A3](-)">
      <seq>ctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaccagcacaaaattacaaatctatgaatcttttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="35297" stop="36523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35597" g_stop="35706" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35966" g_stop="36222" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="368" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="384"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E224359" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35597" e_stop="35706"/>
          <exon e_start="35966" e_stop="36222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGC-AAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTAT</genome_strand>
        <mrna_strand>CTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTACCAGCACAAAATTACAAATCTATGAATCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272498" ref_strand="+" ref_description="SGN-E272498 [cLEM-19-N18]">
      <seq>ttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccagatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaagtagctgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="52609" stop="48870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52309" g_stop="52255" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49956" g_stop="49878" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="134" r_length="79" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49877" i_stop="49782" i_length="96">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.468" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49781" g_stop="49610" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="306" r_length="172" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49609" i_stop="49502" i_length="108">
            <donor d_prob="0.882" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49501" g_stop="49421" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49420" i_stop="49292" i_length="129">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.305" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49291" g_stop="49184" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="495" r_length="108" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E272498" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52309" e_stop="52255"/>
          <exon e_start="49956" e_stop="49878"/>
          <exon e_start="49781" e_stop="49610"/>
          <exon e_start="49501" e_stop="49421"/>
          <exon e_start="49291" e_stop="49184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAGGTGAGTTATTTCACTTTTTGATTATATTTTGAGGAATAATTTATGTTTTGTGCATTCTGAACTTCATTTAGCAAGGAAATATGCTTACCACTGCAGTTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATGGTATAGAAATAGCTAAATAATTAATCGTACTTCTATATTCTCAACCTCCATTCCCAGAGATTCAACTCTATATTACATTTCATTTCCATGTCCGCCTTTTTCTTTTAGGATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCAGTATGAAGCTGCTCTTTAATTTTACTTATTTCTTTTCCACCTGTAAGGTGTGCAGTGTGTTATTCTTCTGAGAGATTAAATAAACCTTCTTGGAATGTACATTGCATTTGAATCTAACAAGTGTAGCAGGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTAAGATGTAGGCGAAAGCTGGGCGTTAAACCTAACAAACCAAAACTCCCTGCTTCAGATACCGC</genome_strand>
        <mrna_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG................................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG............................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA.................................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268979" ref_strand="+" ref_description="SGN-E268979 [cLEI-16-A20]">
      <seq>aagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagctgaacggcagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaagactgaaaaatgtggctctggaattgtggcagatgaagatatcaaacgaggagactttgttatagagtatgttggagaagttattgatgacaaaacatgtgaagagaggctttggaaaatgaagcatagtggagaaacaaacttctacttgtgtgaaatcaatcgggatatggtgattgatgccacttacaagggcaacaaatcccgatacattaatcatagttgttgtccaaatactgagatgcagaaatggatgattgatggtgaaacaagaattggcatatttgcaacacgagacattaaaaggggcgagcatctgacctatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="55016" stop="49124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54716" g_stop="54619" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52354" g_stop="52255" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="198" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49956" g_stop="49878" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49877" i_stop="49782" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.468" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49781" g_stop="49610" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="449" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49609" i_stop="49502" i_length="108">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49501" g_stop="49424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="527" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E268979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54716" e_stop="54619"/>
          <exon e_start="52354" e_stop="52255"/>
          <exon e_start="49956" e_stop="49878"/>
          <exon e_start="49781" e_stop="49610"/>
          <exon e_start="49501" e_stop="49424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAGGTGAGTTATTTCACTTTTTGATTATATTTTGAGGAATAATTTATGTTTTGTGCATTCTGAACTTCATTTAGCAAGGAAATATGCTTACCACTGCAGTTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATGGTATAGAAATAGCTAAATAATTAATCGTACTTCTATATTCTCAACCTCCATTCCCAGAGATTCAACTCTATATTACATTTCATTTCCATGTCCGCCTTTTTCTTTTAGGATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTA</genome_strand>
        <mrna_strand>AAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTGAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG................................................................................................TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG............................................................................................................GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331825" ref_strand="+" ref_description="SGN-E331825 [cTOD-7-M22]">
      <seq>gggaaccggtcaaggttgaaatttaactgggatgagcaataacaggctaagtggtcattagctcagatcagcttttcaggttatagtcaatcagtgttatatccagtgccagtcaaggtgatgcctgctatgaagactgctattcatggtgggattgggcacgtattcagcaaactaataaaggagattggtgatcctgttgactttgaacttccagattggttaaataaatggcagtcaatgccctatacctttattaagcgcaatatatacctcactaagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagctcaacggcagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaagactgaaaaatgtggctctggaattgtggcagatgaagatatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="57554" stop="49612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57253" g_stop="57183" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="79" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56831" g_stop="56776" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="135" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55119" g_stop="54990" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="265" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54730" g_stop="54619" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="377" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52354" g_stop="52255" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="477" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49956" g_stop="49912" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="522" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E331825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57253" e_stop="57183"/>
          <exon e_start="56831" e_stop="56776"/>
          <exon e_start="55119" e_stop="54990"/>
          <exon e_start="54730" e_stop="54619"/>
          <exon e_start="52354" e_stop="52255"/>
          <exon e_start="49956" e_stop="49912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAGGTACACTCAAGAAATACTATGAATATAGATGAAGTGGTGGATAACGTATGGCGGAGAAAACTGAAGAGTCGAAATTCTATACTTGTCTTAAGATTATCCATTAAATGAGAGTAGCATGTGAAAGGAAGTGGTAATTTTGTGGTTGCATTATCAGAAACTTCATTGTCCCAGCAATGGCATAAATAAAACTGCTGAAGTCCTTAATTTATGCATTTTATTTTCATGAACTTCTTTTTAGTCTGCAATTTTATACTGATTGATGTGGTATTTTGTAAATCTTAATCTGCAATTTTCTACTTTGTATATCAGCTTCTCTGCACATCAATTGATTCCTTGTTTTACCATTATTAGGTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAGGTTCAGATACTAACTTTTTCTGGTTCATACTCTTTGTCTGCATGTTGTCTATATCAATTTAACTTACAGAGATATTATGTCGAGTGATATCATATGCTGTGCTATATACTTATAATAATTATATTATGTGCTATACAAGTTACATTTTTTGTTCTACATATTTGAATCTCAATAATTTCTGCTCCCTCTTGGTATTTTTGTAATCAATGAAGCAACATAACTAGACCTCTAAAGGAGAAGATTTGGTGCGAGGCATTTGGTAAAGTCAGGACGTTTTGATATACTGCAAATTAAATAGTAAATTGACAGCTGCTGTAGTGACTCCAGTAAAGCCAAAAGACTAGCTAGCAGCTAGCCAGTGGCTTGAATTCAAGTCTGAGTTCAGTTCCTATCGAGGATAAAAGTGGGAATATTTATTTTGGAAGCATTAGTTTCTTCATTACCGCGGTGGGGACGAGTTCGCTTTTTCTACTTTCCATGGGTTAGGGGTGGGTGGTGTTTGCAGGTTTCGATTGGAACTCCAATTTGTCAAAATGCATTTTTCACAGCTTTAAATCATAAAATGCCCACTCCCTTGGACATGGTGATGTCCACTTAAATAATAGAATTGGGCATCCGAGTGTTGAAGACCAGAAAGAGTCAAATACGAGCATTCCTAGTGGACAATCGAGGAAACAAAACTTTCCTCCGAAGCTAATTAGGGATTCCTTTTTTCCCGGTTAATAATTAGGGGTTCCATTGCAATATATTTTCCTTGTAGTTCTACTCCAATTCAAGAAGTCTGAAACTTTTTCAAGTTGGTGATTCAGTAGCTTTTAGAACATATAATTTCTTATTCTGCTGGCTGGTTTGTCTGATTTAGGCATTTGCTTTTGTCTCCACATTCGTCCTTCATGTTTGCGAAATGTGAAGAAGAGAGTTTAATGATTTTTAATCCTGTTCGATTTAAATATATAGGAAATTGAGATACTCTTTTATGTTATTTGCATGACTAGCTAATATAGGCGAACATAGTGGATATGTAATCCTTGATTTCAATCCATCCACTACACACTTCCAGTCCTATGTGATGGTTCCATTTTCCTTTTTCCTATTTATTTTAGTGAAAGATCCTTGCATTTTATGTTGGCCTGAGATGCACCCAAGGGGGTGTGTGGCTTAGTGGTTAATGAAGTGGTTGAAAAACCATGAGATCTTGGGTTAAAATCCTAGTGGATGCAAAAAACATGGGGCAATTTCTTTCCATTTGGTTATGTGGCACGTGCCTTGGGCCATGTCCTTATGCTGATTGTGAAATTTTTTTGCCCGTAGTGCCGACAATGTTTGTTGGAACATTTTTTGAGTTAAATTTTGTAGTAGTTTTTATTTGATTATTATATTTGTAATTATTTTGATAATATATTGTAGCTAGAAAGATCCACTTAATGTAATTACAAAGCCCATTCCTTTTGTTTTTTTGGATGTTGGATTGTATTTAAGAAAAAATGGTTCTCTATGATTTAGTTCTTGAGCTTCTTTTACTTATTGACATATATAAAAAGTTGGGAATGCCATTGCTGATTCCGATCGTCTCAATCAATTGATTGGGAAGAGATTACTTTAGAATGCAAAAAAATATATCATCTTGTTAATATGCCTTTTTCTTTCCGTGGCCAGACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCAGTATCCTTTCATTTGATGGTCTTGATATTTGTGACCTATGATATTCTTCACCTATCTATTAGATGTTCTTTCATATTGTGATAGTTTACATCTTACACGTACACTGTTCACTTCTGCATCTCTTGGATAAGATCTTTGTGCTTCATCTCATTTCCTTTTTCATTAAGGTTTTCTGTCTGACCTTCATAGTCCTTTATCTTTGTGATCTTTCTTTGTATCCTCTTTTTTTTCCTCTTCTGTTGGTATTAACTACTTGAAGATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAA</genome_strand>
        <mrna_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAGTGGTCATTAGCTCAGATCAGCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA...................................................................................................................................................................................................................................................................ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622809" ref_strand="+" ref_description="SGN-E622809 [73180]">
      <seq>ctgtgaagaagatgaaattagtgaaggaaagtgactggggccttaatgagctgggatgaagaaggggtccctgcaaaagacagaagtagatggagaattatccctagtgctatatggcgggctatctggaaagagaggaattcaagatgtgttgagagcatactgaacaatgtgcagaaagttaaaacttaactgcttcttttttatgtccttggtgtaatctgttatactcaaatgacactatctctatcattgatgttctagactcaatttaatcatagagaagtgacatttggagtacacttgtatttaaggtttcaataccacccatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="52580" stop="50544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52280" g_stop="52255" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52254" i_stop="51151" i_length="1104">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51150" g_stop="50843" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="334" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E622809" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52280" e_stop="52255"/>
          <exon e_start="51150" e_stop="50843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTT-AAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTG</genome_strand>
        <mrna_strand>CTGTGAAGAAGATGAAATTAGTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGACTGGGGCCTTAATGAGCTGGGATGAAGAAGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGCGGGCTATCTGGAAAGAGAGGAATTCAAGATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAAACTTAACTGCTTCTTTTTTATGTCCTTGGTGTAATCTGTTATACTCAAATGACACTATCTC-TATCATTGATGTTCTAGACTCAATTTAATCATAGAGAAGTGACATTTGGAGTACACTTGTATTTAAGGTTTCAATACCACCCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621829" ref_strand="+" ref_description="SGN-E621829 [72189]">
      <seq>caactctcctccgacgagcgtcgccgccgcagacttcccgccggtcaaggttgaaatttaactgggacgagcaataacaggctaaatggtcattagctcagatcagtttttcaggttatagtcaatcagtgttatagccagtgccagtcaaagtgatgcctgctatgaagactgctattcatggtgggattgggcatgtattcagcaaactaataaaggagattggtgatcctgttgactttgaacttccagattggttaaataaatggcagtcaatgccctatacctttattaagcgcaatatatacctcactaagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagcttaacggaagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaaggtagacactttaagaactttgagcagcttcagatagttgaacaaatatcacctgatggatgcattttaactgcttgattgtttttaactacttctcattgagatgacagtttgtgatgccttgtggtgacttttgtaattctgaattgtctattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="59230" stop="51795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58930" g_stop="58887" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58886" i_stop="57254" i_length="1633">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57253" g_stop="57183" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="114" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351">
            <donor d_prob="0.864" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56831" g_stop="56776" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="170" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55119" g_stop="54990" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="300" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54730" g_stop="54619" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="412" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52354" g_stop="52095" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="671" r_length="259" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E621829" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58930" e_stop="58887"/>
          <exon e_start="57253" e_stop="57183"/>
          <exon e_start="56831" e_stop="56776"/>
          <exon e_start="55119" e_stop="54990"/>
          <exon e_start="54730" e_stop="54619"/>
          <exon e_start="52354" e_stop="52095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTCCTCCGACGAGCGTCGCCGCCGCAGACTTTCCCGCCGGGAACCGGTTTACCTCTTCTCTCTGTCTTTCTGGTTTCTTATTTGGGCTTCTCCTTTCATTTTCATTTCTTTTCATTGCTTCATATTCATGAATTAACCAAACAGTTACTCTAATTGCTTTGGCCGAGTGCGTTGTTTCACTAGGGTTTTGGATGAAAATTGTTTTCAGTTTGGTTACTTCATCCGAAATTTACTTAGTTTTTTTCATTCTTCGTGTGATTCTCTTTGCTAAAAAATAATAATACTGAAATGGTGAATTCTGCTGTTAATTATGGTTGAATTGTTTGTTTAGATTATACAATTCTGCTGTTAATTGCTTTGTTCTTCATGTTTGGCTTAAAAGGTTCTTTATTCTGCATCAGATAATGAAAATTTGATTTTTTTTTTATGAGCGGTAGTTGAATACATGTTCAGATTTTTGGATCTTCCTTTTACTTTTTGCTTATTTAGGTTTTAGTGTATATATATAGAGATTTTGAATACCCTGAATACAAGACTAGAGGTTAGCTTAGTGGTTAGGGGATCAAAATTCACCTTGAGGTTCCAAGTTAATTCCAAACACTACGCTTTTATTTCTCGAATTCCCTAGTCTTGAACTGTCACTGGCCATACTTATGGTCTATATTGAAGGAGAGACTTGGCGTAATGTGTAAATTTGCCTCCATGTGACCAGATGGGTTTGAGGCGTGAAAATAGTCTCTTTCAGAAATGCAACGTAGCTTCGAGTCGTGGAAATAGCCTCTTGCAGCAATGCAAGGTTAGGCTACATACAATATACCCTTATGATCCATCCCTTCCTTGGAACGCGAGTATTGTGGTAGCTTAGTGCACCAACTGCATTTACGTTCCTTCCCTACTATTCTATCTGGTTGTAAATGTTGACCGTAGAAGCTATCTGTTATCTACACATTGCTTCTCATTTCCTCCATTTCCAATTACTTCACCCACTCCCCTAATCATTGCACCTTTTTCTAAGGGAAATACTCCATCGTTGACTTAAACCAGTAATCTTCTACAACAGCATTGAGATTATTTACTATGCTGAATAGGCGGGAAACTGATCTTTGAGGGGTCTATGTCCTAACACATCTTCCTTTTAAAAATATTTTTTTCTATCATCGCCCACTTTGATGTAAACATGCACTAAGAACATATCCTTTTTTTGGTAACTGGATTGTATTAATTACCAAGCAAGTATTTACGAACCAGCAAGTCTATAACTTAGTCTACTAATCTGAAAGGAAACTCTTTGAACACCAAACAAAACAAGGAAAAGAGCTATCCAATAATACGCAATAAGAAAAGCTACTGCTTGAGACATCAGAGTTCATCCTAATTGCTGTTCAGAAGCTGCAATTTATCAGCTTTCTCCTCATGGCATCAGAAGCATGGACATTACATATTCAAGCTATCTCTTTTGCTATTTGTTTACATTGTTTCACCTTCCCTTCAAAAATCATAGCATTCCTTTCCTTCCATATAGTAAGTATAAACTCTGAATTGACCATCTTAATAAGAAGGGCCTGCTTGCTTCTCCCTTTAATTGCCTTCAATACAGTTTGGTACTGGAGCAACCGTTATTAGTTTCTGCAATTTGAAAAGTTACTTGTTCTTGTTTTCTTGAACTGCCTAGGTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAGGTACACTCAAGAAATACTATGAATATAGATGAAGTGGTGGATAACGTATGGCGGAGAAAACTGAAGAGTCGAAATTCTATACTTGTCTTAAGATTATCCATTAAATGAGAGTAGCATGTGAAAGGAAGTGGTAATTTTGTGGTTGCATTATCAGAAACTTCATTGTCCCAGCAATGGCATAAATAAAACTGCTGAAGTCCTTAATTTATGCATTTTATTTTCATGAACTTCTTTTTAGTCTGCAATTTTATACTGATTGATGTGGTATTTTGTAAATCTTAATCTGCAATTTTCTACTTTGTATATCAGCTTCTCTGCACATCAATTGATTCCTTGTTTTACCATTATTAGGTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAGGTTCAGATACTAACTTTTTCTGGTTCATACTCTTTGTCTGCATGTTGTCTATATCAATTTAACTTACAGAGATATTATGTCGAGTGATATCATATGCTGTGCTATATACTTATAATAATTATATTATGTGCTATACAAGTTACATTTTTTGTTCTACATATTTGAATCTCAATAATTTCTGCTCCCTCTTGGTATTTTTGTAATCAATGAAGCAACATAACTAGACCTCTAAAGGAGAAGATTTGGTGCGAGGCATTTGGTAAAGTCAGGACGTTTTGATATACTGCAAATTAAATAGTAAATTGACAGCTGCTGTAGTGACTCCAGTAAAGCCAAAAGACTAGCTAGCAGCTAGCCAGTGGCTTGAATTCAAGTCTGAGTTCAGTTCCTATCGAGGATAAAAGTGGGAATATTTATTTTGGAAGCATTAGTTTCTTCATTACCGCGGTGGGGACGAGTTCGCTTTTTCTACTTTCCATGGGTTAGGGGTGGGTGGTGTTTGCAGGTTTCGATTGGAACTCCAATTTGTCAAAATGCATTTTTCACAGCTTTAAATCATAAAATGCCCACTCCCTTGGACATGGTGATGTCCACTTAAATAATAGAATTGGGCATCCGAGTGTTGAAGACCAGAAAGAGTCAAATACGAGCATTCCTAGTGGACAATCGAGGAAACAAAACTTTCCTCCGAAGCTAATTAGGGATTCCTTTTTTCCCGGTTAATAATTAGGGGTTCCATTGCAATATATTTTCCTTGTAGTTCTACTCCAATTCAAGAAGTCTGAAACTTTTTCAAGTTGGTGATTCAGTAGCTTTTAGAACATATAATTTCTTATTCTGCTGGCTGGTTTGTCTGATTTAGGCATTTGCTTTTGTCTCCACATTCGTCCTTCATGTTTGCGAAATGTGAAGAAGAGAGTTTAATGATTTTTAATCCTGTTCGATTTAAATATATAGGAAATTGAGATACTCTTTTATGTTATTTGCATGACTAGCTAATATAGGCGAACATAGTGGATATGTAATCCTTGATTTCAATCCATCCACTACACACTTCCAGTCCTATGTGATGGTTCCATTTTCCTTTTTCCTATTTATTTTAGTGAAAGATCCTTGCATTTTATGTTGGCCTGAGATGCACCCAAGGGGGTGTGTGGCTTAGTGGTTAATGAAGTGGTTGAAAAACCATGAGATCTTGGGTTAAAATCCTAGTGGATGCAAAAAACATGGGGCAATTTCTTTCCATTTGGTTATGTGGCACGTGCCTTGGGCCATGTCCTTATGCTGATTGTGAAATTTTTTTGCCCGTAGTGCCGACAATGTTTGTTGGAACATTTTTTGAGTTAAATTTTGTAGTAGTTTTTATTTGATTATTATATTTGTAATTATTTTGATAATATATTGTAGCTAGAAAGATCCACTTAATGTAATTACAAAGCCCATTCCTTTTGTTTTTTTGGATGTTGGATTGTATTTAAGAAAAAATGGTTCTCTATGATTTAGTTCTTGAGCTTCTTTTACTTATTGACATATATAAAAAGTTGGGAATGCCATTGCTGATTCCGATCGTCTCAATCAATTGATTGGGAAGAGATTACTTTAGAATGCAAAAAAATATATCATCTTGTTAATATGCCTTTTTCTTTCCGTGGCCAGACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCAGTATCCTTTCATTTGATGGTCTTGATATTTGTGACCTATGATATTCTTCACCTATCTATTAGATGTTCTTTCATATTGTGATAGTTTACATCTTACACGTACACTGTTCACTTCTGCATCTCTTGGATAAGATCTTTGTGCTTCATCTCATTTCCTTTTTCATTAAGGTTTTCTGTCTGACCTTCATAGTCCTTTATCTTTGTGATCTTTCTTTGTATCCTCTTTTTTTTCCTCTTCTGTTGGTATTAACTACTTGAAGATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCA</genome_strand>
        <mrna_strand>CAACTCTCCTCCGACGAGCGTCGCCGCCGCAGAC-TTCCCGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGTTGAAATTTAACTGGGACGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................GTTATAGTCAATCAGTGTTATAGCCAGTGCCAGTCAAAGTGATGCCTGCTATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTCATGGTGGGATTGGGCATGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA...................................................................................................................................................................................................................................................................ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTTAACGGAAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTTAAGAACTTTGAGCAGCTTCAGATAGTTGAACAAATATCACCTGATGGATGCATTTTAACTGCTTGATTGTTTTTAACTACTTCTCATTGAGATGACAGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTG-TCTATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581209" ref_strand="+" ref_description="SGN-E581209 [6452]">
      <seq>gttatagtcaatcagtgttatagccaggtgccagtcaaagtgatgcctggctatgaagacttctattcatggtgggattgggcacgtattcagcaaactagtaaaggagattggtgatcctgttgactttgaacttccagattggttaaataaatggcagtcaatgccctatacctttattaagcgcaatttatacctcactaagaaggtaaagcgacgtctggaagatgatggtatattttgttcctggcgctcgacagcagaaacttctgttgtgtgtggcacggattgtctctgtggcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="57131" stop="54319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56831" g_stop="56776" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55119" g_stop="54990" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="188" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54730" g_stop="54613" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="306" r_length="118" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E581209" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56831" e_stop="56776"/>
          <exon e_start="55119" e_stop="54990"/>
          <exon e_start="54730" e_stop="54613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATAGTCAATCAGTGTTATATCCA-GTGCCAGTCAAGGTGATGCCT-GCTATGAAGGTTCAGATACTAACTTTTTCTGGTTCATACTCTTTGTCTGCATGTTGTCTATATCAATTTAACTTACAGAGATATTATGTCGAGTGATATCATATGCTGTGCTATATACTTATAATAATTATATTATGTGCTATACAAGTTACATTTTTTGTTCTACATATTTGAATCTCAATAATTTCTGCTCCCTCTTGGTATTTTTGTAATCAATGAAGCAACATAACTAGACCTCTAAAGGAGAAGATTTGGTGCGAGGCATTTGGTAAAGTCAGGACGTTTTGATATACTGCAAATTAAATAGTAAATTGACAGCTGCTGTAGTGACTCCAGTAAAGCCAAAAGACTAGCTAGCAGCTAGCCAGTGGCTTGAATTCAAGTCTGAGTTCAGTTCCTATCGAGGATAAAAGTGGGAATATTTATTTTGGAAGCATTAGTTTCTTCATTACCGCGGTGGGGACGAGTTCGCTTTTTCTACTTTCCATGGGTTAGGGGTGGGTGGTGTTTGCAGGTTTCGATTGGAACTCCAATTTGTCAAAATGCATTTTTCACAGCTTTAAATCATAAAATGCCCACTCCCTTGGACATGGTGATGTCCACTTAAATAATAGAATTGGGCATCCGAGTGTTGAAGACCAGAAAGAGTCAAATACGAGCATTCCTAGTGGACAATCGAGGAAACAAAACTTTCCTCCGAAGCTAATTAGGGATTCCTTTTTTCCCGGTTAATAATTAGGGGTTCCATTGCAATATATTTTCCTTGTAGTTCTACTCCAATTCAAGAAGTCTGAAACTTTTTCAAGTTGGTGATTCAGTAGCTTTTAGAACATATAATTTCTTATTCTGCTGGCTGGTTTGTCTGATTTAGGCATTTGCTTTTGTCTCCACATTCGTCCTTCATGTTTGCGAAATGTGAAGAAGAGAGTTTAATGATTTTTAATCCTGTTCGATTTAAATATATAGGAAATTGAGATACTCTTTTATGTTATTTGCATGACTAGCTAATATAGGCGAACATAGTGGATATGTAATCCTTGATTTCAATCCATCCACTACACACTTCCAGTCCTATGTGATGGTTCCATTTTCCTTTTTCCTATTTATTTTAGTGAAAGATCCTTGCATTTTATGTTGGCCTGAGATGCACCCAAGGGGGTGTGTGGCTTAGTGGTTAATGAAGTGGTTGAAAAACCATGAGATCTTGGGTTAAAATCCTAGTGGATGCAAAAAACATGGGGCAATTTCTTTCCATTTGGTTATGTGGCACGTGCCTTGGGCCATGTCCTTATGCTGATTGTGAAATTTTTTTGCCCGTAGTGCCGACAATGTTTGTTGGAACATTTTTTGAGTTAAATTTTGTAGTAGTTTTTATTTGATTATTATATTTGTAATTATTTTGATAATATATTGTAGCTAGAAAGATCCACTTAATGTAATTACAAAGCCCATTCCTTTTGTTTTTTTGGATGTTGGATTGTATTTAAGAAAAAATGGTTCTCTATGATTTAGTTCTTGAGCTTCTTTTACTTATTGACATATATAAAAAGTTGGGAATGCCATTGCTGATTCCGATCGTCTCAATCAATTGATTGGGAAGAGATTACTTTAGAATGCAAAAAAATATATCATCTTGTTAATATGCCTTTTTCTTTCCGTGGCCAGACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCAGTATCCTTTCATTTGATGGTCTTGATATTTGTGACCTATGATATTCTTCACCTATCTATTAGATGTTCTTTCATATTGTGATAGTTTACATCTTACACGTACACTGTTCACTTCTGCATCTCTTGGATAAGATCTTTGTGCTTCATCTCATTTCCTTTTTCATTAAGGTTTTCTGTCTGACCTTCATAGTCCTTTATCTTTGTGATCTTTCTTTGTATCCTCTTTTTTTTCCTCTTCTGTTGGTATTAACTACTTGAAGATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGG</genome_strand>
        <mrna_strand>GTTATAGTCAATCAGTGTTATAGCCAGGTGCCAGTCAAAGTGATGCCTGGCTATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAGTAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA...................................................................................................................................................................................................................................................................ATTTATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGGCGCTCGACAGCAGAAACTTCTGTTGTGTGTGGCACGGATTGTCTCTGTGGCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578264" ref_strand="+" ref_description="SGN-E578264 [LE12BE10]">
      <seq>gagataattgtgtgtaattatatatcataggtgcatgttgcctagcaaaggtaaacgactttcataattatgttacaatctccatataattagaattgtaattatgtgacaagtatacaacaatttcaacatctcacttaattaaactcccttaattatattagtataagggttatattctagaaaatcaatttaagtaattttagaagttaaggaaggagccctaaacctaatattttcctttgtagtctaaatagtgtaatataataatatggtaccgtagattcaaagtggactcctttattttttgagttatttaagttaccttttataatcttcgtccataacaataataacatatttggttagattataagtagggtctatgaagagtagtgcgtacataaatctaagagtttccaatagatctttattttaatgattgctgatatatggagtgataaataatacacgaaatatttgaatatataaaaataatttttttaaaatcaccctttttcttgcactagcttaaaaggagatcaatatgtaatttaaaacaaattttacgtacctagtcatttcgttaaaaaaaatgtattttaagtacatgtgttgttaaaaataatgaactacttagttgttttacaaagaaattaaactcaaagtgatttgatatcaataggaaaaacaaactttgattagtcaaatatgttatgcgtaactaatactacttcctatttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="60833" stop="59484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60533" g_stop="59784" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E578264" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60533" e_stop="59784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</genome_strand>
        <mrna_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACGAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTAAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373616" ref_strand="+" ref_description="SGN-E373616 [TUS-33-I6]">
      <seq>tcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttgacaaatttaaaagaccattattacctaaacacaaacatataaagatccatttttcattacaaaaatcaactttattaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="66568" stop="64982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66268" g_stop="66165" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66070" g_stop="65969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="206" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65882" g_stop="65709" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="380" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65624" g_stop="65289" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="716" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="749"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E373616" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66268" e_stop="66165"/>
          <exon e_start="66070" e_stop="65969"/>
          <exon e_start="65882" e_stop="65709"/>
          <exon e_start="65624" e_stop="65289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</genome_strand>
        <mrna_strand>TCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAAGATCCATTTTTCATTACAAAAATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374823" ref_strand="+" ref_description="SGN-E374823 [TUS-14-B2](-)">
      <seq>attggtagatgaaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttgacaaatttaaaagaccattattacctaaacacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="66606" stop="65018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66306" g_stop="66165" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66070" g_stop="65969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="244" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65882" g_stop="65709" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="418" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65624" g_stop="65319" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="724" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E374823" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66306" e_stop="66165"/>
          <exon e_start="66070" e_stop="65969"/>
          <exon e_start="65882" e_stop="65709"/>
          <exon e_start="65624" e_stop="65319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATA</genome_strand>
        <mrna_strand>ATTGGTAGATGAAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206213" ref_strand="-" ref_description="SGN-E206213 [cLEC-29-D19]">
      <seq>tttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccataacatgttcaaaatgtagactcttgtcagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="66101" stop="65060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65801" g_stop="65709" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65624" g_stop="65360" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="358" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E206213" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65801" e_stop="65709"/>
          <exon e_start="65624" e_stop="65360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTG</genome_strand>
        <mrna_strand>TTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCATAACATGTTCAAAATGTAGACTCTTGTCAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305714" ref_strand="+" ref_description="SGN-E305714 [cLEX-14-I13]">
      <seq>taaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="66555" stop="65404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66255" g_stop="66165" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66070" g_stop="65969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="193" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65882" g_stop="65709" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="367" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65624" g_stop="65619" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="373" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E305714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66255" e_stop="66165"/>
          <exon e_start="66070" e_stop="65969"/>
          <exon e_start="65882" e_stop="65709"/>
          <exon e_start="65624" e_stop="65619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGG</genome_strand>
        <mrna_strand>TAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214795" ref_strand="+" ref_description="SGN-E214795 [cLEC-79-F11]">
      <seq>ttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaagggacattgtttattccttattcaccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67079" stop="65498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66779" g_stop="66689" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66615" g_stop="66508" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66368" g_stop="66165" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="403" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66070" g_stop="65969" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65882" g_stop="65798" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="590" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E214795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66779" e_stop="66689"/>
          <exon e_start="66615" e_stop="66508"/>
          <exon e_start="66368" e_stop="66165"/>
          <exon e_start="66070" e_stop="65969"/>
          <exon e_start="65882" e_stop="65798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTC</genome_strand>
        <mrna_strand>TTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGGACATTGTTTATTCCTTATTCACCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212537" ref_strand="+" ref_description="SGN-E212537 [cLEC-74-K16]">
      <seq>caaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattccctaagaacttccccagtggtattacaagctggtcgtttggtcaaagttgctaatgctattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67507" stop="65892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67207" g_stop="67153" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="66689" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="437" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66615" g_stop="66508" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="545" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66368" g_stop="66192" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="721" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E212537" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67207" e_stop="67153"/>
          <exon e_start="67070" e_stop="66689"/>
          <exon e_start="66615" e_stop="66508"/>
          <exon e_start="66368" e_stop="66192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCC</genome_strand>
        <mrna_strand>CAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCCTAA-GAACTTCCCCAGTGGTATTACAAGCTGGTCGTTTGGTCAAAGTTGCTAATGCTATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201112" ref_strand="+" ref_description="SGN-E201112 [cLEC-10-E24]">
      <seq>acaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67287" stop="65920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66987" g_stop="66689" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66615" g_stop="66508" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66368" g_stop="66220" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="556" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E201112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66987" e_stop="66689"/>
          <exon e_start="66615" e_stop="66508"/>
          <exon e_start="66368" e_stop="66220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCG</genome_strand>
        <mrna_strand>ACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208862" ref_strand="+" ref_description="SGN-E208862 [cLEC-51-M4]">
      <seq>cattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaaacatcctgagctgaaagttaaattggtagatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67529" stop="65991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67229" g_stop="67153" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="66689" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="459" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66615" g_stop="66508" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="567" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66368" g_stop="66291" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="645" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E208862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67229" e_stop="67153"/>
          <exon e_start="67070" e_stop="66689"/>
          <exon e_start="66615" e_stop="66508"/>
          <exon e_start="66368" e_stop="66291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGT</genome_strand>
        <mrna_strand>CATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAACATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204135" ref_strand="+" ref_description="SGN-E204135 [cLEC-27-O23]">
      <seq>tcatgattatttattttttaacagtactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagctgatcaaaaaggcttaaaggtttagagcctcagactctaaaatcacgacgagaagttgaataacaatggctaaatttgcataaggaagcatcctcagctgaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="66939" stop="66008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66639" g_stop="66508" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66368" g_stop="66308" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="193" r_length="61" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E204135" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66639" e_stop="66508"/>
          <exon e_start="66368" e_stop="66308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTA</genome_strand>
        <mrna_strand>TCATGATTATTTATTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCTGATCAAAAAGGCTTAAAGGTTTAGAGCCTCAGACTCTAAAATCAC...........................................................................................................................................GACGAGAAGTTGAATAACAATGGCTAAATTTGCATAAGGAAGCATCCTCAGCTGAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208054" ref_strand="+" ref_description="SGN-E208054 [cLEC-34-M16]">
      <seq>gcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacattacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctgcgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67610" stop="66384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67310" g_stop="67153" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="66689" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="540" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66615" g_stop="66603" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="553" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E208054" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67310" e_stop="67153"/>
          <exon e_start="67070" e_stop="66689"/>
          <exon e_start="66615" e_stop="66603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAAT</genome_strand>
        <mrna_strand>GCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATTACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTGCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210563" ref_strand="+" ref_description="SGN-E210563 [cLEC-35-J16]">
      <seq>gattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67512" stop="66460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67212" g_stop="66760" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E210563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67212" e_stop="66760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACAT</genome_strand>
        <mrna_strand>GATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205218" ref_strand="+" ref_description="SGN-E205218 [cLEC-16-J20]">
      <seq>gatgtattttgacagcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67687" stop="66610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67387" g_stop="66910" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E205218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67387" e_stop="66910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATC</genome_strand>
        <mrna_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201324" ref_strand="+" ref_description="SGN-E201324 [cLEC-4-O9]">
      <seq>gatgtattttgacagcatttattcatccggttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagaggatcttctctctgtttccacctctcaagtacttgatatatactgcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcacaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="67687" stop="66616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67387" g_stop="66916" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E201324" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67387" e_stop="66916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTA</genome_strand>
        <mrna_strand>GATGTATTTTGACAGCATTTATTCATCCGGTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGAGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACTGCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCACAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301485" ref_strand="+" ref_description="SGN-E301485 [cLEW-23-C11]">
      <seq>gttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacattacacgcaattcagaactaattattctcttttcatgccaatatatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68147" stop="66705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67847" g_stop="67761" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="320" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67372" g_stop="67153" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="540" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67070" g_stop="67005" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="606" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E301485" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67847" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67153"/>
          <exon e_start="67070" e_stop="67005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTA</genome_strand>
        <mrna_strand>GTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATTACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211564" ref_strand="+" ref_description="SGN-E211564 [cLEC-67-I9]">
      <seq>ctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgangtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68493" stop="66745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68193" g_stop="68141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="265" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="498" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67153" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="718" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67070" g_stop="67045" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="744" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E211564" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68193" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67153"/>
          <exon e_start="67070" e_stop="67045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAAT</genome_strand>
        <mrna_strand>CTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGANGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212253" ref_strand="+" ref_description="SGN-E212253 [cLEC-75-J5]">
      <seq>taaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacnatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68492" stop="66843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68192" g_stop="68141" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="264" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="497" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67153" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="717" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67070" g_stop="67053" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="735" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E212253" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68192" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67153"/>
          <exon e_start="67070" e_stop="67053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCA</genome_strand>
        <mrna_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACNATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374751" ref_strand="+" ref_description="SGN-E374751 [TUS-14-B2]">
      <seq>tctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68494" stop="66906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68194" g_stop="68141" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="266" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="499" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67206" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="666" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E374751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68194" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCA</genome_strand>
        <mrna_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303846" ref_strand="+" ref_description="SGN-E303846 [cLEX-4-A1]">
      <seq>aacctggaattctctcagaatggccatgggcaaaccttggcaactgtaagaacttggtgtcggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatattgaacgggctattatactatgctggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatatcggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctatgtcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttatatagctacaatcactctttatgttatctatactgatttcatgaacaacttgggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68490" stop="66928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68190" g_stop="68141" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="262" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="496" r_length="234" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67228" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="641" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E303846" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68190" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTAT-TCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCA</genome_strand>
        <mrna_strand>AACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTGTAAG........................................................................................................................................................................AACTTGGTGTCGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTGAACGGGCTATTATACTATGCTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATCGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATGTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTATATAGCTACAATCACTCTTTATGTTATCTATACTGATTTCATGAACAACTTGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306886" ref_strand="+" ref_description="SGN-E306886 [cLEY-11-P8]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68486" stop="66939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68186" g_stop="68141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67239" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="625" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E306886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68186" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAAC</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213371" ref_strand="+" ref_description="SGN-E213371 [cLEC-71-O13]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaagtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctaacatcactctttatggtatctttactgatttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68486" stop="66942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68186" g_stop="68141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67242" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="622" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E213371" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68186" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATG</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAAGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTAACATCACTCTTTATGGTATCTTTACTGATTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307992" ref_strand="+" ref_description="SGN-E307992 [cLEY-14-I13]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68486" stop="66947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68186" g_stop="68141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67247" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="617" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E307992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68186" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATT</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304292" ref_strand="+" ref_description="SGN-E304292 [cLEX-12-G23]">
      <seq>taaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68492" stop="66949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68192" g_stop="68141" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="264" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="497" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67249" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="621" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E304292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68192" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGA</genome_strand>
        <mrna_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207391" ref_strand="+" ref_description="SGN-E207391 [cLEC-36-I20]">
      <seq>cctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68488" stop="66952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68188" g_stop="68141" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="260" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="493" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67252" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="614" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E207391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68188" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTAC</genome_strand>
        <mrna_strand>CCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202413" ref_strand="+" ref_description="SGN-E202413 [cLEC-6-C17]">
      <seq>tctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68494" stop="66963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68194" g_stop="68141" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="266" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67443" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="499" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67372" g_stop="67263" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="609" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E202413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68194" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67443"/>
          <exon e_start="67372" e_stop="67263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTAT</genome_strand>
        <mrna_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213772" ref_strand="+" ref_description="SGN-E213772 [cLEC-76-I5]">
      <seq>aatggccatgggcaaaccttggcaactttaagtacttggcgctggcaccatgtgatggtcatagcatatactcagtcttgagggatggagatgttggatacatagccatacttccatgtctactcttcatatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataataaaattgttgatagaagcattgagtttgatccagttgatagataaaacaactgggatgatcaaattatatttaacgggctattatactatgttggagacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68472" stop="67182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68172" g_stop="68141" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="244" r_length="212" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.561" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67482" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="438" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E213772" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68172" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATT</genome_strand>
        <mrna_strand>AATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGCGCTGGCACCATGTGATGGTCATAGCATATACTCAGTCTTGAGGGATGGAGATGTTGGATACATAGCCATACTTCCATGTCTACTCTTCATATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAAAATTGTTGATAGAAGCATTGAGTTTGATCCAGTTGATAGATAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGAGACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287074" ref_strand="+" ref_description="SGN-E287074 [cLES-6-N4]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68486" stop="67211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68186" g_stop="68141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67511" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E287074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68186" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCA</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297386" ref_strand="+" ref_description="SGN-E297386 [cLEW-14-D14]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="68486" stop="67287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68186" g_stop="68141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67972" g_stop="67761" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67675" g_stop="67587" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="347" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E297386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68186" e_stop="68141"/>
          <exon e_start="67972" e_stop="67761"/>
          <exon e_start="67675" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTG</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713495" ref_strand="+" ref_description="SGN-E713495 [FB08DB11]">
      <seq>ccattcattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgcttcattgccacattatgattcatcggagtgggattatctaagaggagctttagctaccgtagatagagactatggtatactaaataaggtgttccataatgttactgatactcatgtcttgcatcatatattctcatacatatcacattaccatgcaatggaggcgaccaacgcgattaagccattgctaggagattattaccaagttgatgataccccaattttaaaggcaatgtggagggatacaaaggagtgcatctatgtagagaaggatgaaggatctcaaggtagaggtgtttattggtataaaaacaagctttgaaagtagaataccaagtaattggttaaatgttttaacctaataagaagatgcaagtattttgaataattatgtgtgtttttgttgtattttattgttaaatgttggttttagttgtcactaatgtattgttaaaataaaatatctacttatatgtaacaatcaatttggtatgaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73065" stop="71537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72765" g_stop="71951" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E713495" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72765" e_stop="71951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCATTCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAATAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGATGAAGGATCTCAAGGTAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATGTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGTCACTAATGTATTGTTAAAATAAAATATCTACTTATATGTAACAATCAATTTGGTATGAAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705665" ref_strand="+" ref_description="SGN-E705665 [FA27DB11]">
      <seq>ctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgcttcattgccacattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73978" stop="72137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73678" g_stop="73651" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73298" g_stop="72437" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="890" r_length="862" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E705665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73678" e_stop="73651"/>
          <exon e_start="73298" e_stop="72437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATG</genome_strand>
        <mrna_strand>CTCATCTCTCTTTAACTTATACAAAAGA................................................................................................................................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701681" ref_strand="+" ref_description="SGN-E701681 [FA16CF04]">
      <seq>atctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgggcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatgaatttatagtgttgatcactcttatgcaacacactcatgcttcattggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73980" stop="72143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73680" g_stop="73651" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73298" g_stop="72443" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="886" r_length="856" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E701681" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73680" e_stop="73651"/>
          <exon e_start="73298" e_stop="72443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCAC</genome_strand>
        <mrna_strand>ATCTCATCTCTCTTTAACTTATACAAAAGA................................................................................................................................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGGGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGAATTTATAGTGTTGATCACTCTTATGCAACACACTCATGCTTCATTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205635" ref_strand="+" ref_description="SGN-E205635 [cLEC-21-B10]">
      <seq>catctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73361" stop="72153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73061" g_stop="72453" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E205635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73061" e_stop="72453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCT</genome_strand>
        <mrna_strand>CATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202578" ref_strand="+" ref_description="SGN-E202578 [cLEC-6-P16]">
      <seq>tgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73301" stop="72220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73001" g_stop="72520" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E202578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73001" e_stop="72520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTA</genome_strand>
        <mrna_strand>TGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214267" ref_strand="+" ref_description="SGN-E214267 [cLEC-77-L17]">
      <seq>gaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattangacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73476" stop="72402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73176" g_stop="72702" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E214267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73176" e_stop="72702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTG</genome_strand>
        <mrna_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTANGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296043" ref_strand="+" ref_description="SGN-E296043 [cLET-27-J23]">
      <seq>gaagaaggccattcctcctcactgcttccaacgttctcttattcgacccttctcttatcttattcaagatctcatacttggctccgtcttctattatattgccaacacttacttccatctacttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggacatcatggcttcagtgattaccaatgggtagatgacactggtggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctagggttaaatccaaactgagatggggctacaaatactggaacaatccattacgacgagtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73476" stop="72444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73176" g_stop="72744" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E296043" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73176" e_stop="72744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTC</genome_strand>
        <mrna_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGACCCTTCTCTTATCTTATTCAAGATCTCATACTTGGCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTACTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGACATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGGTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGGTTAAATCCAAACTGAGATGGGGCTACAAATACTGGAACAATCCATTACGACGAGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723564" ref_strand="+" ref_description="SGN-E723564 [FC20DE12]">
      <seq>gcggccaatcggccgaattagagttaagacatatcccttatctctctttaacttatacaaaagagtaaggctaaaagaattctcttttgatctttgctttttgctttgctttaatttagattaagcgcttatcattatatcaaaaaacattttaactttaacattttcttttcctaataatgaaatatttaagtttgatttgccatgcatggttgaattgtattctaacttctgtttaataatattaatttcatattactttttatattataactatcatagtaaaccaaaatccaaacttaattggtgcagatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcctgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggttcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73998" stop="72456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73693" g_stop="73559" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="156" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73558" i_stop="73459" i_length="100">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73458" g_stop="72756" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="855" r_length="699" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E723564" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73693" e_stop="73559"/>
          <exon e_start="73458" e_stop="72756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAGACATATATCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTA</genome_strand>
        <mrna_strand>AGTTAAGACATATCCCTTATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTAGATTAAGCGCTTATCATTATATCAAAAAACATTTTAAC....................................................................................................TTTAACATTTTCTTTTCCTAATAATG-AAA---TATTTAAGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCTGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGTTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206997" ref_strand="+" ref_description="SGN-E206997 [cLEC-33-D10]">
      <seq>tctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73979" stop="72459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73679" g_stop="73651" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73298" g_stop="72759" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="569" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E206997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73679" e_stop="73651"/>
          <exon e_start="73298" e_stop="72759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCA</genome_strand>
        <mrna_strand>TCTCATCTCTCTTTAACTTATACAAAAGA................................................................................................................................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206117" ref_strand="+" ref_description="SGN-E206117 [cLEC-29-D7]">
      <seq>tctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73974" stop="72522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73674" g_stop="73651" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73298" g_stop="72822" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="501" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E206117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73674" e_stop="73651"/>
          <exon e_start="73298" e_stop="72822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGAT</genome_strand>
        <mrna_strand>TCTCTCTTTAACTTATACAAAAGA................................................................................................................................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200818" ref_strand="+" ref_description="SGN-E200818 [cLEC-9-N13]">
      <seq>tcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="73977" stop="72660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73677" g_stop="73651" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73298" g_stop="72960" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="366" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E200818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73677" e_stop="73651"/>
          <exon e_start="73298" e_stop="72960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGT</genome_strand>
        <mrna_strand>TCATCTCTCTTTAACTTATACAAAAGA................................................................................................................................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397119" ref_strand="+" ref_description="SGN-E397119 [TUS-44-N12]">
      <seq>tttgaactttgagatttaggatatagcaaaagcaaaaatgggaggtggtggtaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccctatgatcgttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76599" stop="77842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76813" g_stop="76825" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76913" g_stop="77542" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="643" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E397119" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76813" e_stop="76825"/>
          <exon e_start="76913" e_stop="77542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCA</genome_strand>
        <mrna_strand>TTTGAACTTTGAG.......................................................................................ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCCTATGATCGTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373858" ref_strand="+" ref_description="SGN-E373858 [TUS-31-G16]">
      <seq>ttgaactttgagatttaggatatagcaaaagcaaaaatgggaggtggtggtaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76600" stop="77921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76814" g_stop="76825" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76913" g_stop="77621" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="721" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E373858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76814" e_stop="76825"/>
          <exon e_start="76913" e_stop="77621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTG</genome_strand>
        <mrna_strand>TTGAACTTTGAG.......................................................................................ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290375" ref_strand="+" ref_description="SGN-E290375 [cLES-20-I4]">
      <seq>aactttgagatttaggatatatcacaagcaaaaatgggaggtggtggaaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76603" stop="77585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76817" g_stop="76825" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76913" g_stop="77285" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="382" r_length="373" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E290375" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76817" e_stop="76825"/>
          <exon e_start="76913" e_stop="77285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCG</genome_strand>
        <mrna_strand>AACTTTGAG.......................................................................................ATTTAGGATATATCACAAGCAAAAATGGGAGGTGGTGGAAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210819" ref_strand="+" ref_description="SGN-E210819 [cLEC-68-L21]">
      <seq>tcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttngtattgtgaatggggtcatagtggtaataactttactgcatcacactcatgcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76722" stop="78055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77022" g_stop="77755" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E210819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77022" e_stop="77755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCA</genome_strand>
        <mrna_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTNGTATTGTGAATGGGGTCATAGTGGTAATAACTTTACTGCATCACACTCATGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212322" ref_strand="+" ref_description="SGN-E212322 [cLEC-74-E19]">
      <seq>tcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaagtgtgattgcaactatttatttattatatcgccgtgctctaacacaaggcctaacttgggttatatgcatctatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="76722" stop="77991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77022" g_stop="77691" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E212322" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77022" e_stop="77691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGT</genome_strand>
        <mrna_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAAGTGTGATTGCAACTATTTATTTATTATATCGCCGTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215092" ref_strand="+" ref_description="SGN-E215092 [cLEC-78-H11]">
      <seq>gaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="77081" stop="78287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77381" g_stop="77987" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E215092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77381" e_stop="77987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATAT</genome_strand>
        <mrna_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202163" ref_strand="+" ref_description="SGN-E202163 [cLEC-7-D11]">
      <seq>gaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="77081" stop="78177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77381" g_stop="77877" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E202163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77381" e_stop="77877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCA</genome_strand>
        <mrna_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373857" ref_strand="+" ref_description="SGN-E373857 [TUS-31-G16](-)">
      <seq>tcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttctggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgttgttatttgtattttggatggtgtgttatcataataataataatattgttactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="77172" stop="78488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77472" g_stop="78187" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E373857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77472" e_stop="78187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</genome_strand>
        <mrna_strand>TCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397118" ref_strand="+" ref_description="SGN-E397118 [TUS-44-N12](-)">
      <seq>tgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttctggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgttgttatttgtattttggatggtgtgttatcataataataataatattgttacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="77203" stop="78488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77503" g_stop="78187" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E397118" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77503" e_stop="78187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</genome_strand>
        <mrna_strand>TGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395863" ref_strand="+" ref_description="SGN-E395863 [TUS-18-E17](-)">
      <seq>aacacaaggcctaacttgggttatacgcatctatggagtaccccttgtaattgggaatgggttcatattgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatgtattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttttggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgtaattatttgtattttggatggagtgttatcataataataataatactgttacattaataaaaatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="77353" stop="78489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77653" g_stop="78211" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E395863" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77653" e_stop="78211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGTACAAACATTGTTAA</genome_strand>
        <mrna_strand>AACACAAGGCCTAACTTGGGTTATACGCATCTATGGAGTACCCCTTGTAATTGGGAATGGGTTCATATTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATGTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTTTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTAATTATTTGTATTTTGGATGGAGTGTTATCATAATAATAATAATACTGTTACATTAATAAAAATGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451344" ref_strand="+" ref_description="SGN-E451344 [cSTS-12-O10]">
      <seq>gttagctattgcataaaacaacaactgcctctaccacaagtgtttttctatggagccatggaaagacctgactggaaaagtagtgatggtgactggggcctcctcgggaatcgggctagagttctgtctcgacttggcaaaagccggttgcaggatcattgcttccgctcgtcgtgttgacaggctgaaaactctctgcaaccagattaatattaattcagagggcctggctcggcgtgcaatcgctgtccagctcgacatcactgctgatagtgctactattgaggctgctgtacaaatagcttgggatgccttcggacgtatcgatgtcttgattaacaacgcaggccttacaggtaatgtgtacaattcattggatttgccagaggaggaatgggaacatatctataagacgaatctaagaggggcatggttggtgtcaaaatatgtatgcagacatatgcgcgattctaaacaggacggaggctctgttattaatatctcttcaatttctggtttaaatcgaggactaatacctgggggtcttgcttacggttcttcgaagatggctcttgacatggtcactaagatgatggcccttgagttgggagtagaccaaatcagagtgaactcaatatcaccaggaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88341" stop="86940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88042" g_stop="87690" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87689" i_stop="87611" i_length="79">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87610" g_stop="87378" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="589" r_length="233" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87377" i_stop="87303" i_length="75">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87302" g_stop="87240" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="652" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E451344" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88042" e_stop="87690"/>
          <exon e_start="87610" e_stop="87378"/>
          <exon e_start="87302" e_stop="87240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCTATTGCATAAAACAACAAGTGGCTCTACCACAAGTGTTTTTATATGGAGCCATGGAAAGACCTGACCGGAAAAGTAGTGATGGTGACTGGGGCCTCCTCGGGAATCGGGCTAGAGTTCTGTCTCGACTTGGCAAAAGCCGGCTGCAGGATCATTGCTTCCGCTCGTCGTGTTGACAGGCTGAAAACTCTCTGCAACAAGATT-A-A-TAATTCAGATGGCCTGGCTCGGCGTGCAATCGCTGTCCAGCTCGACATTACTGCTGATAGTGCTACTATTCAGGCTGCGGTACAAATAGCTTGGGATGCCTTTGGACGTATCGATGCCTTGATTAACAATGCAGGCCTTAGAGGTAATCTGAAAATTCATTAATTTGTTACCAAGTTCATTCTAACTTTTCTTTTTGGTTGTATTTTAATATATTTACATAGGTAATGTGTACGATTCATTGGATTTGCCAGAAGAGGAATGGGAACATACCTATAAGACGAATCTAAGAGGGGCATGGTTGGTGTCGAAATATGTATGTAGACATATGCGCGATTCTAAACAGGGCGGAGGCTCTGTGATTAATATCTCTTCAATTGCTGGTTTAAATCGAGTACTAATACCCGGGGGTCTTGCTTATGCTTCTTCGAAGATGGCTCTTGACATGGTCACTAAGGTAGCTCTAGCTAGAGATTTCCATTGTTTTCTTCAATGTTATGTTAAGTTAATAATTCAAGTAATTGAATGGCAGATGATGGCCCTTGAGTTGGGAGTAGACAATATCAGAGTGAACTCAATATCACCAGGAATTTTC</genome_strand>
        <mrna_strand>GTTAGCTATTGCATAAAACAACAACTGCCTCTACCACAAGTGTTTTTCTATGGAGCCATGGAAAGACCTGACTGGAAAAGTAGTGATGGTGACTGGGGCCTCCTCGGGAATCGGGCTAGAGTTCTGTCTCGACTTGGCAAAAGCCGGTTGCAGGATCATTGCTTCCGCTCGTCGTGTTGACAGGCTGAAAACTCTCTGCAACCAGATTAATATTAATTCAGAGGGCCTGGCTCGGCGTGCAATCGCTGTCCAGCTCGACATCACTGCTGATAGTGCTACTATTGAGGCTGCTGTACAAATAGCTTGGGATGCCTTCGGACGTATCGATGTCTTGATTAACAACGCAGGCCTTACAG...............................................................................GTAATGTGTACAATTCATTGGATTTGCCAGAGGAGGAATGGGAACATATCTATAAGACGAATCTAAGAGGGGCATGGTTGGTGTCAAAATATGTATGCAGACATATGCGCGATTCTAAACAGGACGGAGGCTCTGTTATTAATATCTCTTCAATTTCTGGTTTAAATCGAGGACTAATACCTGGGGGTCTTGCTTACGGTTCTTCGAAGATGGCTCTTGACATGGTCACTAAG...........................................................................ATGATGGCCCTTGAGTTGGGAGTAGACCAAATCAGAGTGAACTCAATATCACCAGGAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423918" ref_strand="+" ref_description="SGN-E423918 [STM-42-D14]">
      <seq>gttagctattgcataaaacaacaactgcctctaccacaagtgtttttctatggagccatggaaagacctgactggaaaagtagtgatggtgactggggcctcctcgggaatcgggctagagttctgtctcgacttggcaaaagccggttgcaggatcattgcttccgctcgtcgtgttgacaggctgaaaactctctgcaaccagattaatattaattcagagggcctggctcggcgtgcaatcgctgtccagctcgacatcactgctgatagtgctactattgaggctgctgtacaaatagcttgggatgccttcggacgtatcgatgtcttgattaacaacgcaggccttacaggtaatgtgtacaattcattggatttgccagaggaggaatgggaacatatctataagacgaatctaagaggggcatggttggtgtcaaaatatgtatgcagacatatgcgcgattctaaacaggacggaggctctgntattaatatctcttcaatttctggtttaaatcgaggactaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88341" stop="87131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88042" g_stop="87690" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87689" i_stop="87611" i_length="79">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87610" g_stop="87431" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="536" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E423918" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88042" e_stop="87690"/>
          <exon e_start="87610" e_stop="87431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCTATTGCATAAAACAACAAGTGGCTCTACCACAAGTGTTTTTATATGGAGCCATGGAAAGACCTGACCGGAAAAGTAGTGATGGTGACTGGGGCCTCCTCGGGAATCGGGCTAGAGTTCTGTCTCGACTTGGCAAAAGCCGGCTGCAGGATCATTGCTTCCGCTCGTCGTGTTGACAGGCTGAAAACTCTCTGCAACAAGATT-A-A-TAATTCAGATGGCCTGGCTCGGCGTGCAATCGCTGTCCAGCTCGACATTACTGCTGATAGTGCTACTATTCAGGCTGCGGTACAAATAGCTTGGGATGCCTTTGGACGTATCGATGCCTTGATTAACAATGCAGGCCTTAGAGGTAATCTGAAAATTCATTAATTTGTTACCAAGTTCATTCTAACTTTTCTTTTTGGTTGTATTTTAATATATTTACATAGGTAATGTGTACGATTCATTGGATTTGCCAGAAGAGGAATGGGAACATACCTATAAGACGAATCTAAGAGGGGCATGGTTGGTGTCGAAATATGTATGTAGACATATGCGCGATTCTAAACAGGGCGGAGGCTCTGTGATTAATATCTCTTCAATTGCTGGTTTAAATCGAGTACTAATAC</genome_strand>
        <mrna_strand>GTTAGCTATTGCATAAAACAACAACTGCCTCTACCACAAGTGTTTTTCTATGGAGCCATGGAAAGACCTGACTGGAAAAGTAGTGATGGTGACTGGGGCCTCCTCGGGAATCGGGCTAGAGTTCTGTCTCGACTTGGCAAAAGCCGGTTGCAGGATCATTGCTTCCGCTCGTCGTGTTGACAGGCTGAAAACTCTCTGCAACCAGATTAATATTAATTCAGAGGGCCTGGCTCGGCGTGCAATCGCTGTCCAGCTCGACATCACTGCTGATAGTGCTACTATTGAGGCTGCTGTACAAATAGCTTGGGATGCCTTCGGACGTATCGATGTCTTGATTAACAACGCAGGCCTTACAG...............................................................................GTAATGTGTACAATTCATTGGATTTGCCAGAGGAGGAATGGGAACATATCTATAAGACGAATCTAAGAGGGGCATGGTTGGTGTCAAAATATGTATGCAGACATATGCGCGATTCTAAACAGGACGGAGGCTCTGNTATTAATATCTCTTCAATTTCTGGTTTAAATCGAGGACTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687841" ref_strand="+" ref_description="SGN-E687841 [T3_tus_81_E20]">
      <seq>cgtaattatcaaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcatggtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctctggggcatcaccattggtgggagcgataccttatgcccaaaattatggaggacatcagtttggcatgtgcgccgggcagttaggggatggtagggcaataacctcttggaaagatattgaattcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88758" stop="91456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89058" g_stop="89398" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="450" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="507" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="612" r_length="105" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E687841" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89058" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAA-CTCTTGGAGAGATATTGAATTCAAAGT</genome_strand>
        <mrna_strand>CGT-AATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGCGCCGGGCAGTTAGGGGATGGTAGGGCAATAACCTCTTGGAAAGATATTGAATTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327321" ref_strand="+" ref_description="SGN-E327321 [cTOC-19-F2]">
      <seq>aattatcaaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcatggtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctctggggcatcaccattggtgggagcgataccttatgcccaaaattatggaggacatcagtttggcatgtgggccgggcagttaggggatggtanggcaataactcttggagagatattgaaattcaagtcacaaaggtgggagctgcagctttagggtgctggaaagaccccatatagtcgttttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88762" stop="91520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89062" g_stop="89398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="447" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="504" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91220" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="670" r_length="166" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E327321" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89062" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGAT</genome_strand>
        <mrna_strand>AATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTANGGCAATAACTCTTGGAGAGATATTGAAATTCAAGTCACAAAGGTGGGAGCTGCAGCTTTAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729853" ref_strand="+" ref_description="SGN-E729853 [LA22BC05]">
      <seq>aaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttccaccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcatggtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctctggggcatcaccattggtgggagcgataccttatgcccaaaattatggaggacatcagtttggcatgtgggccgggcagttaggggatggtagggcaataactcttggagagatattgaattcaaagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88769" stop="91461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89069" g_stop="89398" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="440" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="497" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91161" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="604" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E729853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89069" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCAC</genome_strand>
        <mrna_strand>AAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCACCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447269" ref_strand="+" ref_description="SGN-E447269 [cSTA-25-F8]">
      <seq>ttcagcttccctttctcacacctcttcttccaccaccgctttcttcctctcttccaccgccaaatttctccgacccagattctctttatgccctaattccccttttcagttcccaattcataaaaaacgacaccgttttgtgttttctcagagcacagcagcttcaatggactctgctgccactgttgattcagttgctgatgatttaaagaaacaaaacttagaaggagttgaaattaagcttaaattgaatcttgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcattgtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctcgggggcatcaccattggtgggagcgataccttatgcccaaaattatgggggacatcagtttggcatgtgggccgggcagttaggggatggtagggcaataactcttggagaaattttgaattcaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88782" stop="91460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89076" g_stop="89398" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="441" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="498" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91160" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="604" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E447269" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89076" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCT--TTCC-------AGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCA</genome_strand>
        <mrna_strand>TTCA-GCTTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCACCGCCAAATTTCTCCGACCCAGATTCTCTTTATGCCCTAATTCCCCTTTTCAGTTCCCAATTCATAAAAAACGACACCGTTTTGTGTTTTCTCAGAGCACAGCAGCTTCAATGGACTCTGCTGCCACTGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAGAAGGAGTTGAAATTAAGCTTAAATTGAATCTTGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATTGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCGGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGGGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAAATTTTGAATTCAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740441" ref_strand="+" ref_description="SGN-E740441 [LC21BG11]">
      <seq>ctttctcacacctcttcttccaccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtgttgcatgcttgctacacgaaagtgttaccctctgtaccggtcaataaccctcagcttgtagcatggtcagaatcagtggcggagttacttgaattggatcctagagaatttgagaggcctgattttccccttattttctctggggcatcaccattggtgggagcgataccttatgcccaaaattatggaggacatcagtttggcatgtgggccgggcagttaggggatggtagggcaataactcttggagagatattgaattcaaagtcacaaaggtgggagctgcagcttaagggtgctggaaagaccccatatagtcgttttgctgatggtcttgcagtgcttcgtagtagcatccgagaattcctttgtagtgaagcaatgcacggtcttggaatcccaacaacacgagcactttgtctagtgacgacgggaaaagatgttatgagggatatgttttatgatggaaatcccaaagatgaacctggtgcaattgtctgcagagttgctcaatcgtttctgcgttttggttcttatcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88787" stop="92041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89087" g_stop="89398" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90725" g_stop="90834" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="422" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90917" g_stop="90973" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="479" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91055" g_stop="91354" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="779" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91355" i_stop="91662" i_length="308">
            <donor d_prob="0.156" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91663" g_stop="91741" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="858" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E740441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89087" e_stop="89398"/>
          <exon e_start="90725" e_stop="90834"/>
          <exon e_start="90917" e_stop="90973"/>
          <exon e_start="91055" e_stop="91354"/>
          <exon e_start="91663" e_stop="91741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAGTGGATTAGACTTATATATTACAGGCATAATAGATAAATAGACCCTCAAACTTTGGCTTCCAAAATTTTATTGGCCACGTCAGCATTCGGTGTCCACTGAGACATAGTAAAGACGAGTTAGAGTGTTTGGTTGGTAGTTCAAATCTAGTTGAGGTGTTTACATGTACACTCTTACTTGCTAGATGAGACTAAGTTTGAGTGTTTGTTTGTGTGTTATGCCTGTATTGTATTAGCGATTGTGAGGAGATGATACCAAAATCTTGGTCAAAAAGTTAATTTGACAGAGAAGATGTCTCAAAAGCGCAGATTTTAAGTAGTAACGCACATTCAAGATTGGATTTTGTTTGAAGACATGAGAAACTGGTTGGAATATCTTGAGTTACTCCTTCCATCCGTCTGAGCTGGTTCACATTGCCTGTCCCAATCCCGGTAGATGAGGAGGGTTGTCAATGGTCAGTCGGAAACAGTCTTTCTACCCATAAAGGTTGGGTAAGGCTGAATACATTTTACTTTTCCCAGACCCCTCTTATGGGATTACATGGGGTTTCTTGTTGTTGTTGTTACTTCCTTTCATCCTATTTGTATGATTGTGTTTGCCAAATATGAGGTTAAATTGTTAATTAGACTTATATATTGTAGTGGAAGAAAATATTAAGGTAATCGTTGAAAAGTCAGTTTGATTAATCATATCAAAATAAAATATTTGAGTAGCTTAATGAAATTGAATTCTGAAAAGTTGTGAGAGAATGGTGGCAAGTATCTTAGATGTCCAAAAAATATAATTGTCATGTACATTGGAACAGAAGTATTACATTAGTGAGAGCTTGAGAGAAAATATTGGAGTAGTGGTTGAAATGTAATTTTGGTACAGAAGGCTTCACATTGAAGTTTGAAACTTGATAAGTGTAAATGTATAATGAATTACTTAAGTTGTCAGTGTGTAGAAATGGGATTATGTCAAATATTCTAGATGTCTCAACATGGAAAGAGTGCCCTATAAATTGGGCTGGAGGGACTATTGTTTATTCATAACTAGCTAACAAGTTAGGTTTATAAGAGATATACCCGTGCGGATGTGCCATAGAAATTATTCCTTGATTGCAAAAAATGTGGAATATAGTTGTTACCTATGTGATAAGCAATGCAGTTTGCATTGAGTTTGAAATGTCAGTAACTGAAGATAGAATTCTTTTGCAAGTCATCATCTGTTCAAACATTGTCTTTGTAGGTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGAGTGAGTTTTTAAAAGCTTGATGATGTTATGGCCACGCTAATTGTGGCTTGATGAAATTGTCAGACTTACTTTAATTTTTCAGATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGCGTAAGTTTCTTGAAGCTTGTCGAATTTCTCTTTGAAATTTTAGTCATGAAACAACATCTAAGGTTGGACTTGATTCTGCAGGATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGAGTATGTTCCTCAGCGACAATTTTTTATGCTGTTTGATAAGTTGCATAAATCAGCAAGAAATCATCTTGCTAGCCTGAATTGTATTTCGTGTTCTCTTCATTATGTGTAGCATCTTTGCCTTCAAATCTTCTATGCCTTTGGAAGAATGAAACTGTGAGGAAGTTTGATGAGAAGCAGACTTCTTTATGGGAGGTTTGGAGTCTGCATAGTAATTCATGTCTTAGAATTATACTCCGCATAATTGTTACTTTGTACATTCTAGTGCATTTTCGTTTCCACTATTGATTATTGTCTTCTGTCTCATGCAGTGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTG</genome_strand>
        <mrna_strand>CTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA..................................................................................ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC.................................................................................GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGA....................................................................................................................................................................................................................................................................................................................TGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379697" ref_strand="+" ref_description="SGN-E379697 [TUS-1-M14]">
      <seq>ccatttggagaatatgactaggagtgaaagcatatcagctaacacagacgtggatttaacttcaaacaagtatgcagcttgggcagtggaagttgctgagaggactgcgtccatgattgccaggtggcaggatgttggtttcacacatggagtcatgaacactgataatatgagcgtgttaggactcactattgactatggtccctttggctttttagattcttttgatcccagttacacaccaaataccactgatcttcctggcagaagatattgttttgcaaatcagccagatgtaggtttatggaatattgcgcagtttacctctgctctatctactgccgagttgcttagtgataaagaggcagattatgctatggaaagatatggtaacaaattcatggatgattatcaagatatcatgaccaggaaacttggtctgacaaagtacaataaaaagttgattggtgaactactcaagaatatggtctccgataaagttgattacacaaatttctttcgatctctatcnaaatnaaagctgatcctgcaattccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="91516" stop="93204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91816" g_stop="91892" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91893" i_stop="92312" i_length="420">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92313" g_stop="92619" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="384" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92620" i_stop="92728" i_length="109">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92729" g_stop="92904" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="559" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E379697" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91816" e_stop="91892"/>
          <exon e_start="92313" e_stop="92619"/>
          <exon e_start="92729" e_stop="92904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAGGTAAATATAAAGGCTATCTTGAAGATAATATAGGGATTCCCTCTTTCTCAAAAAAAAATAATATAGTGATTCCCTTGCCTATGAAAAAACTAATCTCCTTATAAAGACGGCACGTAGAGTGCGCAAGGAGAGTAATGGTAGTTATTCATTGAGGACTAATCAGTGTTTCAAACTTCTCCATTTTTGGTGACACTCTTTATCATATACAAATACTCCCTCCGTTTCAATACATTTGTCTTACTTTCCTTTTTATTCCGTTTAAGAAAGAATGGCTATTTCTTTTTTTGACGCAACTCTAATTTTTTTACTTTCCACATGTCATGGACCACAAGATTTAGAAAGAATATAAGTGCAACAGTCCATGTATACTTTTGACAATTTGCTTCCCTACATCCTATTGATTTGGGTGCATCATTTCAGCTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAG</genome_strand>
        <mrna_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG.............................................................................................................ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCNAA-ATNAAAGCTGATCCTGCAATTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200048" ref_strand="+" ref_description="SGN-E200048 [cLEC-8-G14]">
      <seq>ccatttggagaatatgactaggagtgaaagcatatcagctaacacagacgtggatttaacttcaaacaagtatgcagcttgggcagtggaagttgctgagaggactgcgtccatgattgccaggtggcaggatgttggtttcacacatggagtcatgaacactgataatatgagcgtgttaggactcactattgactatggtccctttggctttttagattcttttgatcccagttacacaccaaataccactgatcttcctggcagaagatattgttttgcaaatcagccagatgtaggtttatggaatattgcgcagtttacctctgctctatctactgccgagttgcttagtgataaagaggcagattatgctatggaaagatatggtaacaaattcatggatgattatcaagatatcatgaccaggaaacttggtctgacaaagtacaataaaaagttgattggtgaactactcaagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="91516" stop="93131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91816" g_stop="91892" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91893" i_stop="92312" i_length="420">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92313" g_stop="92619" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="384" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92620" i_stop="92728" i_length="109">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92729" g_stop="92831" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E200048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91816" e_stop="91892"/>
          <exon e_start="92313" e_stop="92619"/>
          <exon e_start="92729" e_stop="92831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAGGTAAATATAAAGGCTATCTTGAAGATAATATAGGGATTCCCTCTTTCTCAAAAAAAAATAATATAGTGATTCCCTTGCCTATGAAAAAACTAATCTCCTTATAAAGACGGCACGTAGAGTGCGCAAGGAGAGTAATGGTAGTTATTCATTGAGGACTAATCAGTGTTTCAAACTTCTCCATTTTTGGTGACACTCTTTATCATATACAAATACTCCCTCCGTTTCAATACATTTGTCTTACTTTCCTTTTTATTCCGTTTAAGAAAGAATGGCTATTTCTTTTTTTGACGCAACTCTAATTTTTTTACTTTCCACATGTCATGGACCACAAGATTTAGAAAGAATATAAGTGCAACAGTCCATGTATACTTTTGACAATTTGCTTCCCTACATCCTATTGATTTGGGTGCATCATTTCAGCTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATG</genome_strand>
        <mrna_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG.............................................................................................................ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379123" ref_strand="+" ref_description="SGN-E379123 [TUS-1-M14](-)">
      <seq>gataaagttgattacacaaatttctttcgatctctatcaaacatcaaagctgatcctgcaattccagaggaccaattattgattcctctcaaagatgttctcttagatattggtatggaacgcagggaagcctggactaactggataaagtcatatatacaagagctctccacaactggtgtattagatgaggagaggaaagtttcaatgaattttgtaaatccaaagtacatcctcagaaactatctatgccagaatgccattgatgcagcagaacaaggcgattttgaggaggttcggcagttattgaaggttatgcaatgtccatttgatgaacagcctggtatggagaaatatgcacgcttgcctccagcttgggctcatcgtccgggtgtatgcatgctttcttgttcctcataaggtttccgggtgtatgcttatgctttcttgttcctcataatatctccactatgtaataccagagtttcacttgtatatatataactagtctcccggcacgtgcgttgcacgtgtattccaaataaaaatcagtaaaaaaaataaatgaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="92538" stop="95066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92838" g_stop="93002" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93003" i_stop="94357" i_length="1355">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94358" g_stop="94766" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="574" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-E379123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92838" e_stop="93002"/>
          <exon e_start="94358" e_stop="94766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAGGTATGTGACAATGAATTTCCTTATTCAAATAATACAATGCCGCCGCCTCAATCCCAGGGGTCGGCTATATTAATCCTCACTGTCTATGTCTGGTCCATTTATGCTCATTTCAGTCCAATATTATTCAATTTTCCCAAATAGAATGAAGCATATAATGTGTTTAGAATTAGTTTAGCTACTTGAGCTCAACATTGCAGTGAGTAGGGTAATATAAGGTCGGGTAACATAAGGTCCTTTGAAATCGGACTTTGTCCTGGAACCACCCGTATTTGAATAGTTATTCACTTCAATAATAAGTTGTTATGGTTTTGTTCTTTAAACTGTTGTCAAATGTTCTTTTAGGATAGCTGGTTGCTCACCTTGTTTGTTCCTTAGATACCAGTAATGGTAGGTGGTAATGGATAGCAGTTTCCATCCATGGGAAGATGTTCAATTTCATTCCTCCTCTGCCTTGTTCTTCAAGGTTTCCATCTTTCCAGTCTCTTCTACCCTGGGCCCAAAAAAGCAAGAAGAAAGTCATAAAGGAAATAACAGATAGTAGACGTAAGCAATGGGTGAGAAGTAGTTGTGACAACGTTTTTGTATGGCATTGAGTGTGACTCTTATATTCTCATCAATTGAAATGGCTTGTCATGTTAGCTTCCTGCTTCTTCCTCTTTTATGTCTAACACCTTGTGCTCAGATTGTGCTGTGGAAGAGACATCCTTCTACAAGAGGTGTCAGATGACTTGTATGTAGGTAATAGTGTGGTCACCCATTAGGTGGGAGAGGGAGGAAGCTTGCCCCATATCCTTTTTCTCCTTATTAGTAGTAATATTTAGTAATCACATAGTTTCTTATTCTTCATGTGTGTCTACTATTTGTTGCTTCGTTTTGCTTTATATCTTGATATTTGTTGTCATTTTTTTCTGCTTGCAACACTTCCATGAATAACTTCCCTTTTAAGCCGAGGATCTATCGGAAACCTCTCCACCCCACAGAGGTAGGGTAAGGTCTGCATACATCTCACTCTCTCCAGACCCCACTTGTGGGATTACATTGAGTATGTTGTGTTGTATGTAAGTAGTGTTTTTTCTTGAAAAAGAAAGTATCGATATATAAGGCTGATACAACTTGAAAAGCAATGTCAGAGTAAACAACAATTTGAAGCAAAGCCTTGTAACTTACGCAACTTAGACGGTAACTCATTTGCAAATTGAGTTGTTGAATTGTGGTAATAGACAGACAATGCTTGCGTAAAATCCTGCATACACCATTGTTTTATGCGGTTGTTTTTGTGGACTCTTTTCTGGAAATTATCAAGTTCCATTCTTGTATGTGAGGTACTCATGGTGTCACTTTTCTACCTCTTGCAGCTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAATAAAAAAAATAAATGAAAAAGT</genome_strand>
        <mrna_strand>GATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAGTAAAAAAAATAAATGAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367397" ref_strand="+" ref_description="SGN-E367397 [cLPT-7-B21]">
      <seq>ttgcagttgtaagatcccgagggtttttcccaaatgcatactggtactggataggtgtcagcgcacttattggtttcataatcgtctttaacatcttctacagacttgcactcgtttttctcaacccatttggtaagccgcaaggtatgatatcagaagacagtgatgatgccaaaacacaaacactgagaaagaagtatccactagtgagggccagaataagaaaaagggaatggttcttcaatttgaaccgcattccatcaccttcaatgaagttacgtactctgttgacatgcctcaggaaatgaaaaatcaaggtgccactgaagatagattggtacttctgaatggtgtatgcggagctttcaggcccggtgttttgacagcattgatgggagttagtggcgctggaaaaacaacgttaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="99121" stop="97936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98821" g_stop="98696" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98695" i_stop="98620" i_length="76">
            <donor d_prob="0.967" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98619" g_stop="98444" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="301" r_length="175" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98443" i_stop="98365" i_length="79">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98364" g_stop="98236" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="430" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E367397" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98821" e_stop="98696"/>
          <exon e_start="98619" e_stop="98444"/>
          <exon e_start="98364" e_stop="98236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATTGTAAGATCCCGAGGTTTTTTCCCAAATGCATACTGGTACTGGATTGGTGTCGGTGCACTTATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTTTCTTAACCGTGAGTATCTTTAGAGTTTTTCCATTTATTTTCCCTTAAAGGCGTATACATTGAATGTTTAGTTGAATATCTACAGCACTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAACAACAAACACTGGGAAAGAAGTACCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCCATCACCTTCAATGAAGTTACATACTCTGTTGACATGCCTCAGGTAACTAGCTGGGAATTGTTGTAGGATATAAAAATTATGATACTTTCAGTGATACTGAACTTTCCAATGATACTTTCAGGAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</genome_strand>
        <mrna_strand>TTGCAGTTGTAAGATCCCGAGGGTTTTTCCCAAATGCATACTGGTACTGGATAGGTGTCAGCGCACTTATTGGTTTCATAATCGTCTTTAACATCTTCTACAGACTTGCACTCGTTTTTCTCAACC............................................................................CATTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAAC-ACAAACACTGAGAAAGAAGTATCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCAATTTGAACCGCATTCCATCACCTTCAATGAAGTTACGTACTCTGTTGACATGCCTCAG...............................................................................GAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690375" ref_strand="+" ref_description="SGN-E690375 [LH_Ea03F13]">
      <seq>cgttgcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="105288" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104994" g_stop="104922" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104921" i_stop="104852" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104851" g_stop="104597" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="326" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104596" i_stop="104504" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104503" g_stop="104093" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="737" r_length="411" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E690375" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104994" e_stop="104922"/>
          <exon e_start="104851" e_stop="104597"/>
          <exon e_start="104503" e_stop="104093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCAATATCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCTGTAAGTTGTTGAAACAATTCCATTTTGTTTTACATGAAAATCAATTTAGAGCTTGAAAATGATGACATGTTTTCATTGATTTTAAATAACCAGAGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</genome_strand>
        <mrna_strand>CGTTG--CGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT.............................................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693204" ref_strand="+" ref_description="SGN-E693204 [LH_Ea10L10]">
      <seq>ccatttggtttggccattaagtttttcaacttccagaaaagatctaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="104586" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104287" g_stop="104093" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E693204" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104287" e_stop="104093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</genome_strand>
        <mrna_strand>CCATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATCTAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691289" ref_strand="+" ref_description="SGN-E691289 [LH_Ea05L15]">
      <seq>cgtttggtttggccattaagtttttcaacttccagaaaagatctaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="104586" stop="103797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104286" g_stop="104098" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="190" polyA_stop="200"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E691289" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104286" e_stop="104098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCG</genome_strand>
        <mrna_strand>CGTTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATCTAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694215" ref_strand="+" ref_description="SGN-E694215 [LH_Ea03F13](-)">
      <seq>agcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcacagtactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="105289" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104989" g_stop="104922" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104921" i_stop="104852" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104851" g_stop="104597" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="323" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104596" i_stop="104504" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104503" g_stop="104108" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="719" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="740"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E694215" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104989" e_stop="104922"/>
          <exon e_start="104851" e_stop="104597"/>
          <exon e_start="104503" e_stop="104108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCAATATCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCTGTAAGTTGTTGAAACAATTCCATTTTGTTTTACATGAAAATCAATTTAGAGCTTGAAAATGATGACATGTTTTCATTGATTTTAAATAACCAGAGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAA</genome_strand>
        <mrna_strand>AGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT.............................................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCACAGTACTATGCAGTGAAATGATTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697044" ref_strand="+" ref_description="SGN-E697044 [LH_Ea10L10](-)">
      <seq>catttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccaagggaacaagtatatatatgttctgtttgttttgtatttatcgactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="104586" stop="103801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104286" g_stop="104108" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="184" polyA_stop="197"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E697044" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104286" e_stop="104108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAA</genome_strand>
        <mrna_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCAAGGGAACAAGTATATATATGTTCTGTTTGTTTTGTATTTATCGACTATGCAGTGAAATGATTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746325" ref_strand="+" ref_description="SGN-E746325 [GI|47104729]">
      <seq>tttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcaaagaattgacagagttgggatagatttgcctgaaatagaagtaagatatgagcatttaactattgaggcagatgcatatgtaggaagtagagctttgcctacatttatcaactttatctctaatttttttgaggatatattgaactctgtccatatcctaccgagtcgaaagaggaaactaactattcttaatgatgtgagtggtatcattaagcctcgcagattgactttgcttttaggacctccaagttccgggaaaactacattattattagctttggccggaaagctcgactctgcccttaaggttactggaaaagtgacctataatggacatgaaatgaatgagtttgtgccgcaaagaacagctgcttatattagccagtatgatttacatattggagaaatgactgtgagagaaaccttggaattctccgccagatgccagggagttggatcgagttatgagatgttggttgaactgtcaagaagagagaaagcagctaaaatcaagccagatcctgatattgatattttcatgaaggcattagcaacagagggacaagaagccgtttttgttacagattatgttctgaagcttttggggctggatatttgtgcagatactatggtgggagatgaaatgattaggggaatttcaggaggacaaaagaagcgtgtgacaaccggtgaaatgctcgttggaccgtccaaggcacttttcatggatgaaatctcaactggattggatagttctactacttactcaatagtgaactcactaagacaatctgtgcaaatcttgcacggaactgctgtgatatctctcttgcagccagcacccgagacgtacaacttgttcgacgacattattctgttatcagatgagaaaattgtctatcagggacctcgagaggatgtccttggcttctttgagtccatggggttcaaatgtccagacagaaaaggcgtggccgacttcttgcaagaagtgacttcaaagaaagatcaacagcaatattgggtgaggagggatgaaacttaccggtttatcacttcaaaagaatttgctgaggcacatcaatcgttccatgttgggaggaaactcgcggataagcttgcagcttcatatgacaagagcaaaagccatcctgctgctttgtcaactcaaaagtatggtatagggaagaaacaactcttaaaggtctgcactgaacgagaactcttactaatgaagaggaactcatttgtttacatcttcaagttcattcagcttacaattgtggcactcatatcaatgactctctttttccgtactaagatgccgcgtgatacaactgaagatggagtaaaatatgttggtgccctctttttggttgtcactcagattatgtttaacggaatggctgagatcgccctgacaatttacaaacttcctgtcttctacaagcaaagggaccttctcttttacccttcatgggcttatgcaatgcccacatggatactcaaaatgcctataacatttgctgaagttggactttgggtgttcctcacttactatgtcataggatttgatccgagtgctgcaagattattcaaacagtttttgctactcatattactaaaccagatggcgtcagcattgtttcgcttcattggggcagctggaaggaccatgggagttgctaatacatttggaacatttgttctgcttttacagtttgcattgggtggattcgttctttcacgagttgatgtgaagaaatggtggttatggggttactggtcatcaccgatgatgtatgctatgaattcaattcttgtgaatgaatttgatggaaaaaagtggaaacaaattgcaccaaatggaactgattcacttggagttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="110232" stop="105762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109932" g_stop="109548" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109026" g_stop="108906" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="506" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108905" i_stop="108818" i_length="88">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108817" g_stop="108644" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="680" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108643" i_stop="108502" i_length="142">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108501" g_stop="108342" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="840" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108341" i_stop="108001" i_length="341">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108000" g_stop="107924" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="917" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107923" i_stop="107863" i_length="61">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107862" g_stop="107809" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="971" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107808" i_stop="107713" i_length="96">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107712" g_stop="107320" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1364" r_length="393" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107319" i_stop="107238" i_length="82">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107237" g_stop="106956" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1365" r_stop="1646" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="106955" i_stop="106860" i_length="96">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="106859" g_stop="106543" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1647" r_stop="1963" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="106542" i_stop="106448" i_length="95">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="106447" g_stop="106287" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1964" r_stop="2124" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="106286" i_stop="106203" i_length="84">
            <donor d_prob="0.358" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="106202" g_stop="106062" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="2125" r_stop="2265" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E746325" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>2265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109932" e_stop="109548"/>
          <exon e_start="109026" e_stop="108906"/>
          <exon e_start="108817" e_stop="108644"/>
          <exon e_start="108501" e_stop="108342"/>
          <exon e_start="108000" e_stop="107924"/>
          <exon e_start="107862" e_stop="107809"/>
          <exon e_start="107712" e_stop="107320"/>
          <exon e_start="107237" e_stop="106956"/>
          <exon e_start="106859" e_stop="106543"/>
          <exon e_start="106447" e_stop="106287"/>
          <exon e_start="106202" e_stop="106062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAGGTAAAAAGAAAATCTTGATTTCGAATCTTGAACAAAAAGGATGTTTGTAACTAACTTTTTTTTTTAAAAATTTTTTTGGGATTCATAGGATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAGGTATCACCATTAGTTCTATGTATCCAAGACTGACAGTTCAAGGATTAGCTAGCTGTCATTTTTGTCGTTCCGACAATTAATATATATTCTTCTTATTATAGACTGTCAATGCATAAAACTCATTTGTTTGTGTGGAAAACAGGTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATGGTTAGAATTTGTCTCCTTTTTCCTTAATCACTAAACCAGTAATGAGCTTTAACGAAAATAACTTAATTGCCACTAAAAATGTGCATGGTTTGTAAATGTCCCTAAAGCCTATAGCGGTATTGGATCCAATAACAATGAATCAATTAATGCTCGTAAAGCCTTTAGCACTTTTTATTATATGCATATTTAATTTATTGCCACTAAAATTAAAGTTGTTTTTTTATTGTAGTGAATCTTGATCATACTTCAAACTTCTTGTTCTTTAAAAAAAGCATTTTGTGTTGAAATTTAACTAACGTGGATGATATATCGATTGATCTTTCTCGGAATTATTGTTGCAGAGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAGGTAAGCAACTAGAATATTTCCTTTCTCGAAAAGAAATGCTTATAGTTATTTTGGGATGTAGGCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAGGTAACAGAAATATGTTTCACTAATTTCTCAAAATTTCCGACGATCAGAAGGCTGAGGAAAATTTGATAACTAAGTGATTTGTGTATTCCACTGCAGCTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAAGTATGTCTTATAATAAACAAATAAGAATGACAATCATTGATCTATTTTCCCTTCTGATGGTGGAAATTTAAATTCGTTGCAGGTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAGGTGACAACTTGTCAATGAAAATATTAAATTTCAAGTCTCCGGCTCATCATATTTGTTCGCAAGTACTAATGCCTCATGGTTTTGATCTGTTCACAGCTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAGGTAAGAGAAGAAATAGATGATGCAGTATAAAGATCAGGTTACCTTCAACAGCTTCCTTTTTCCCGTGATTACTTAACATCAGTCTATTATTGCAGATTTTTCAAACAGTTTTTGCTACTCATATCACTAAACCAGATGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGATTCGTTCTTTCACGAGGTATATTTGGTGATTTATGTGTTAGTAGAAGCTTTAATCTTGCAAAAACCAACTACTGCTAACAGACTACTGCTGATGTTGTAGTTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</genome_strand>
        <mrna_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG........................................................................................GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG..............................................................................................................................................GTTACTGGAAAAGTGACCTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCTGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG.....................................................................................................................................................................................................................................................................................................................................................AGATGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG.............................................................GCATTAGCAACAGAGGGACAAGAAGCCGTTTTTGTTACAGATTATGTTCTGAAG................................................................................................CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGAATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATAGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTTGAGTCCATGGGGTTCAAATGTCCAGACAGAAAAGGCGTGGCCGACTTCTTGCAAGAA..................................................................................GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG................................................................................................CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAACTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAATGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGTGCTGCAAG...............................................................................................ATTATTCAAACAGTTTTTGCTACTCATATTACTAAACCAGATGGCGTCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTACAGTTTGCATTGGGTGGATTCGTTCTTTCACGAG....................................................................................TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546066" ref_strand="+" ref_description="SGN-E546066 [TUS-69-D20]">
      <seq>tttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcaaagaattgacagagttgggatagatttgcctgaaatagaagtaagatatgagcatttaactattgaggcagatgcatatgtaggaagtagagctttgcctacatttatcaactttatctctaatttttttgaggatatattgaactctgtccatatcctaccgagtcgaaagaggaaactaactattcttaatgatgtgagtggtatcattaagcctcgcagattgactttgcttttaggacctccaagttccgggaaaactacattattattagctttggccggaaagctcgactctgcccttaaggttactggaaaagtgacctataatggacatgaaatgaatgagtttgtgccgcaaagaacagctgcttatattagccagtatgatttacatattggagaaatgactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="110232" stop="108094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109932" g_stop="109548" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109026" g_stop="108906" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="506" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108905" i_stop="108818" i_length="88">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108817" g_stop="108644" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="680" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108643" i_stop="108502" i_length="142">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108501" g_stop="108394" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="788" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E546066" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109932" e_stop="109548"/>
          <exon e_start="109026" e_stop="108906"/>
          <exon e_start="108817" e_stop="108644"/>
          <exon e_start="108501" e_stop="108394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAGGTAAAAAGAAAATCTTGATTTCGAATCTTGAACAAAAAGGATGTTTGTAACTAACTTTTTTTTTTAAAAATTTTTTTGGGATTCATAGGATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAGGTATCACCATTAGTTCTATGTATCCAAGACTGACAGTTCAAGGATTAGCTAGCTGTCATTTTTGTCGTTCCGACAATTAATATATATTCTTCTTATTATAGACTGTCAATGCATAAAACTCATTTGTTTGTGTGGAAAACAGGTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTG</genome_strand>
        <mrna_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG........................................................................................GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG..............................................................................................................................................GTTACTGGAAAAGTGACCTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCTGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357155" ref_strand="+" ref_description="SGN-E357155 [cLHT-17-H15]">
      <seq>ttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcgaagaattgacagagttgggatagatttgcctgaaatagaagttagatatgagcatttaactattgaggcagatgcatatgtaggaagttgagctttgcctacatttatcaactttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="110231" stop="108619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109931" g_stop="109548" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109026" g_stop="108919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="492" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E357155" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109931" e_stop="109548"/>
          <exon e_start="109026" e_stop="108919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTC</genome_strand>
        <mrna_strand>TTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCGAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTTAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTTGAGCTTTGCCTACATTTATCAACTTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278208" ref_strand="-" ref_description="SGN-E278208 [cLER-9-C11]">
      <seq>aacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatccctgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatgggacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacccaatttgaatattgtatgtaatctggtttcccttacatttcttttaaagctgttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="114871" stop="113793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114571" g_stop="114099" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="501"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E278208" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278208" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114571" e_stop="114099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</genome_strand>
        <mrna_strand>AACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCCCTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGGACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACCCAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227378" ref_strand="+" ref_description="SGN-E227378 [cLEL-30-B24](-)">
      <seq>tccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccttcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="114890" stop="113845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114590" g_stop="114148" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="465"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E227378" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114590" e_stop="114148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>TCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCTTCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222349" ref_strand="+" ref_description="SGN-E222349 [cLEL-16-E4](-)">
      <seq>cttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="114869" stop="113845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114569" g_stop="114148" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E222349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114569" e_stop="114148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>CTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227157" ref_strand="+" ref_description="SGN-E227157 [cLEL-30-B22](-)">
      <seq>gaagaaaacaccanngaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="114739" stop="113845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114452" g_stop="114148" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="329"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E227157" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114452" e_stop="114148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAACACCA--GAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>GAAGAAAACACCANNGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227595" ref_strand="+" ref_description="SGN-E227595 [cLEL-30-B12](-)">
      <seq>agtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaaaatcaccctcacacaatttgtatattgtaaaaaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="114715" stop="113869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114415" g_stop="114148" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="271" polyA_stop="290"/>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E227595" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114415" e_stop="114148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>AGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAAAATCACCCTCACACAATTTGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610766" ref_strand="-" ref_description="SGN-E610766 [57934]">
      <seq>caagacgcgcaaatcagatgcatggtttattcaggactctaactgataacatggtagtcggtgtctccaaaggattcgagaagaaacttcaattggtaggcgttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaaattcctgctggactgcaaattaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaattcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattgttaatcttgtgtatccctttgaaaatgagagtcacacaatttgaaattgtatgtaatcttcatatgaaggtggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="117097" stop="113837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117045" g_stop="117012" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117011" i_stop="114622" i_length="2390">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114621" g_stop="114152" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="504" r_length="470" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E610766" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610766" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="117045" e_stop="117012"/>
          <exon e_start="114621" e_stop="114152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAA</genome_strand>
        <mrna_strand>CAAGACGCGCAAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGTGTCTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGCGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAATTCCTGCTGGACTGCAAATTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAATTCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTGTTAATCTTGTGTATCCCTTTGAAAATGAGAGTCACACAATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241592" ref_strand="+" ref_description="SGN-E241592 [cLED-36-I1]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagatcctgctggactgcaagttaaggttgaagaaaacaccacaatcactgttagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggctagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaaggtaggttcattatgcaagtgacttgacaaattttttatcttgtggatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="117097" stop="113880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117097" g_stop="117012" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="137" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117011" i_stop="114622" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114621" g_stop="114180" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="579" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E241592" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117097" e_stop="117012"/>
          <exon e_start="114621" e_stop="114180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCC</genome_strand>
        <mrna_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGATCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCACAATCACTGTTAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCTAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGGTAGGTTCATTATGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242435" ref_strand="+" ref_description="SGN-E242435 [cLED-30-N17]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattctgtcattgttttattgcattcttcttagagctattttgaagttaggttcattttgcaagtgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="117097" stop="113904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117097" g_stop="117012" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="137" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117011" i_stop="114622" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114621" g_stop="114204" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="555" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E242435" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117097" e_stop="117012"/>
          <exon e_start="114621" e_stop="114204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGA</genome_strand>
        <mrna_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTCTGTCATTGTTTTATTGCATTCTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239915" ref_strand="+" ref_description="SGN-E239915 [cLED-29-K17]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattggtttattgtatttttcttagagctattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="117097" stop="113933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117097" g_stop="117012" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="137" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117011" i_stop="114622" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114621" g_stop="114233" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="526" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E239915" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117097" e_stop="117012"/>
          <exon e_start="114621" e_stop="114233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTG</genome_strand>
        <mrna_strand>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGGTTTATTGTATTTTTCTTAGAGCTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213962" ref_strand="+" ref_description="SGN-E213962 [cLEC-80-E12]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatgggtagtcggcgtttccaaaggattcgagaagaaacttcattgggtanggggntggatatcgtgcaaccatcgaaaggaaagacatagttctcaatctcggattttctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="115507" stop="114194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115210" g_stop="114494" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E213962" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115210" e_stop="114494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACAT-GGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTA-GGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATC</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCATTGGGTANGGGGNTGGATATCGTGCAACCATCGAAAGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214002" ref_strand="+" ref_description="SGN-E214002 [cLEC-80-F24]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="115507" stop="114265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115210" g_stop="114564" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E214002" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115210" e_stop="114564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAA</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204617" ref_strand="+" ref_description="SGN-E204617 [cLEC-14-M19]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatggtagtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="115507" stop="114295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115210" g_stop="114595" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E204617" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115210" e_stop="114595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGG</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214589" ref_strand="+" ref_description="SGN-E214589 [cLEC-79-N22]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="115507" stop="114601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115210" g_stop="114901" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-E214589" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115210" e_stop="114901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACA</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>153</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21448" PGL_stop="14682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21446" e_stop="20809"/>
            <exon e_start="20537" e_stop="20500"/>
            <exon e_start="20406" e_stop="20307"/>
            <exon e_start="19050" e_stop="18943"/>
            <exon e_start="18859" e_stop="18740"/>
            <exon e_start="18659" e_stop="18560"/>
            <exon e_start="18452" e_stop="18283"/>
            <exon e_start="18164" e_stop="17835"/>
            <exon e_start="17684" e_stop="17626"/>
            <exon e_start="17541" e_stop="17475"/>
            <exon e_start="17344" e_stop="17015"/>
            <exon e_start="16915" e_stop="16847"/>
            <exon e_start="16765" e_stop="16679"/>
            <exon e_start="16586" e_stop="16499"/>
            <exon e_start="16315" e_stop="16227"/>
            <exon e_start="16139" e_stop="16035"/>
            <exon e_start="15961" e_stop="15918"/>
            <exon e_start="15812" e_stop="15743"/>
            <exon e_start="15649" e_stop="15546"/>
            <exon e_start="15120" e_stop="14682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.487" e_score="0.938"/>
          <exon-intron don_prob="0.706" acc_prob="0.820" e_score="0.975"/>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.956" acc_prob="0.969" e_score="0.994"/>
          <exon-intron don_prob="0.947" acc_prob="0.983" e_score="0.942"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="21446" e_stop="20809" e_length="638"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20808" i_stop="20538" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20537" e_stop="20500" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20499" i_stop="20407" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20406" e_stop="20307" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20306" i_stop="19051" i_length="1256"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="19050" e_stop="18943" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.793" acc_prob="0.487">
            <gDNA_intron_boundary i_start="18942" i_stop="18860" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="18859" e_stop="18740" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.706" acc_prob="0.820">
            <gDNA_intron_boundary i_start="18739" i_stop="18660" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="18659" e_stop="18560" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18559" i_stop="18453" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="18452" e_stop="18283" e_length="170"/>
          </exon>
          <intron i_serial="7" don_prob="0.956" acc_prob="0.969">
            <gDNA_intron_boundary i_start="18282" i_stop="18165" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="0.942">
            <gDNA_exon_boundary e_start="18164" e_stop="17835" e_length="330"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17834" i_stop="17685" i_length="150"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17684" e_stop="17626" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17625" i_stop="17542" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="17541" e_stop="17475" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17474" i_stop="17345" i_length="130"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="17344" e_stop="17015" e_length="330"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="17014" i_stop="16916" i_length="99"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="16915" e_stop="16847" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16846" i_stop="16766" i_length="81"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16765" e_stop="16679" e_length="87"/>
          </exon>
          <intron i_serial="13" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16678" i_stop="16587" i_length="92"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="16586" e_stop="16499" e_length="88"/>
          </exon>
          <intron i_serial="14" don_prob="0.826" acc_prob="0.880">
            <gDNA_intron_boundary i_start="16498" i_stop="16316" i_length="183"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="16315" e_stop="16227" e_length="89"/>
          </exon>
          <intron i_serial="15" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16226" i_stop="16140" i_length="87"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="16139" e_stop="16035" e_length="105"/>
          </exon>
          <intron i_serial="16" don_prob="0.779" acc_prob="0.985">
            <gDNA_intron_boundary i_start="16034" i_stop="15962" i_length="73"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="15961" e_stop="15918" e_length="44"/>
          </exon>
          <intron i_serial="17" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15917" i_stop="15813" i_length="105"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="15812" e_stop="15743" e_length="70"/>
          </exon>
          <intron i_serial="18" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15742" i_stop="15650" i_length="93"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="15649" e_stop="15546" e_length="104"/>
          </exon>
          <intron i_serial="19" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15545" i_stop="15121" i_length="425"/>
          </intron>
          <exon e_serial="20" e_score="0.988">
            <gDNA_exon_boundary e_start="15120" e_stop="14682" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21446" stop="20809"/>
              <exon start="20537" stop="20500"/>
              <exon start="20406" stop="20395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21439" stop="20809"/>
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              <exon start="20406" stop="20360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21439" stop="20809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21423" stop="21003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557634" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E438666" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="19022" stop="18943"/>
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            <referenceDNA id="SGN-E416340" strand="+"/>
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          <PGS_line>
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              <exon start="18401" stop="18283"/>
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            <referenceDNA id="SGN-E472146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E470443" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E484281" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E437495" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E486171" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E482133" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E486101" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E214931" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206361" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E317106" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="15961" stop="15918"/>
              <exon start="15812" stop="15743"/>
              <exon start="15649" stop="15546"/>
              <exon start="15120" stop="14729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16045" stop="16035"/>
              <exon start="15961" stop="15918"/>
              <exon start="15812" stop="15743"/>
              <exon start="15649" stop="15546"/>
              <exon start="15120" stop="14697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416341" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15616" stop="15546"/>
              <exon start="15120" stop="14737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15087" stop="14682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15069" stop="14682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT : AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG : TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG : GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT : GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT : GCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTCATTAGCTTGCCTCCTG : ATACTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGACATTGATGCTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT : AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTCCTAGAAGTTTGTTATGGAGATCCAAAAGAGAATAACAAACCTGGACTTTACTTCAAG : GTTCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAG : TGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT : GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG : AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG : TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG : GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG : GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG : GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG : GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA : ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG : ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG : GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</gDNA_template>
            <first_frame> H  P  P  A  T  V  H  T  A  R  S  P  P  P  L  R  P  T  T  S  S  F  Q  I  S  Q  C  Q  A  N  G  N  L  L  R  L  Q  S  Q  S  L  H  P  A  V  G  S  R  R  D  L  *  L  K  D  Q  I  Q  *  *  L  N  H  L  I  P  I  L  N  R  N  L  F  Y  H  Q  R  R  N  P  R  D  E  Q  Q  L  K  V  Q  W  *  L  V  N  R  K  A  I  T  R  S  *  R  S  Q  L  L  K  R  Q  N  L  V  *  L  H  Q  L  I  E  I  S  Y  L  S  L  I  R  R  R  R  A  R  N  P  R  G  E  L  Q  *  R  W  N  L  W  W  I  L  *  L  G  V  I  L  W  K  R  K  K  *  M  E  W  S  *  G  V  *  R  R  A  C  R  F  H  L  P  K  G  S  L  R  G  L  R  K  L  K  M  K  S  V  Y  L  P  V  T  L  F  R  M  Q  K  L  D  *  S  G  L  I  A  I :   I  K  G  K  K  M  V  P  R  A  *  M   : V  K  M  I  R  T  S  *  F  K  L  S  A  I  L  V  E  Q  M  L  M  V  R  Y  I  I  S  R  M  M  H  M  *  R :   L  L  M  V  R  T  I  T  F  A  R  L  L  N  S  L  K  Q  L  T  E  C  S  I  L  Q  L  S  G  F  T  E  L  R  I  L :   L  L  K  A  M  I  S  S  L  T  K  N  V  Y  S  F  L  K  S  R  M  T  I  L  L  I  A  L  *  P  N  *  R  L  F  L  C  P  Q  M :   Q  L  H  S  S  R  K  M  *  N  Q  I  V  I  S  T  M  T  *  S  T  C  F  H  T  L  P  S  L  A  C  L  L  :  I  L  Q  V  Q  L  V  H  L  L  L  Y  Q  V  T  L  M  L  V  R  S  K  N  T  I  W  K  R  S  S  W  I  Y  I  Q  D  V  E  Q  C  P  Q  G  Y  A  W  V  P  I  A  K  A  L  N  L  L  L :   N  G  L  L  T  L  T  N  M  H  V  T  V  *  D  *  T  T  L  R  L  R  *  G  M  S  M  P  V  I  S  Y  H  F  *  R  S  G  Y  S  S  V  S  L  V  P  *  *  K  A  V  F  L  H  T  L  I  *  K  *  Q  M  K  L  M  K  M  K  K  M  M  M  K  V  K  I  L  V  M  I  K  K  V  K  F  L  R  S  K  N  S  *  K  F  V  M  E  I  Q  K  R  I  T  N  L  D  F  T  S  R :   F  A  G  E  V  M  V  Q  R  K  T  P  G  S  Q  *  M  A  *   : V  T  A  R  R  K  S  V  S  L  W  *  K  A  S  K  Q  I  F  C  R  C  L :   V  M  L  M  L  Y  A  V  D  H  L  A  K  E  S  V  G  S  I  V  L  G  I  K  K  I  R  C  R  I  P  K  I  N  N  L  M  S  T  W  T  L  W  I  S  *  N  P  G  L  Y  *  W  R  M  W  W  T  L  S  N  S  P  M  V  S  L  G  D  M  H  *  A  D  L  *  G  *  T  T  K  H  G  W  E  *  W  Q  L  V  R  M  V  F  H  N  F  V  C  V  F  S  C  L  E  L  F  H  Q  R :   S  C  H  N  I  H  C  P  H  I  K  L  L  *  G  V  L  F  P  *  N  L  S :   Q  T  Q  L  R  M  I  Q  S  G  I  S  S  *  R  K  N  S  F  L  V  M  H  F  L  I  S  L  W :   W  R  T  M  S  Q  E  M  K  C  L  T  L  M  S  L  N  L  I  S  S  I  L  *  E  W  G  G  M  :  G  C  W  E  A  Y  Y  M  I  I  V  L  F  S  *  T  K  M  I  I  S  V  Y  V  K  F  Q  S  G  R :   V  Q  T  S  G  T  C  P  E  F  V  F  G  Q  I  I  K  L  N  G  T  Q  T  W  R  E  *  S  Y  L  L  G  S  L  W :   S  L  T  M  R  *  A  S  L  V  V  V  P  Q   : N  H  L  V  V  C  G  G  M  K  L  S  Q  Q  L  *  R  E  L  N  P  I  I  R :   P  *  Y  I  H  Y  K  I  E  C  S  Q  F  V  K  M  Q  G  S  K  V  F  L  T  T  T  S  *  *  V  Q  *  K  K   : G  T  C  K  *  V  M  Q  L  Q  F  Q  L  P  E  H  W  A  I  L  W  P  C  Q  *  R  D  Y  L  E  K  H  H  C  S  P  C  Q  K  I  S  L  L  M  R  I  R  I  V  M  K  C  H  N  N  L  N  I  N  *  L  R  L  P  N  Y  L  S  P  S  V  W  G  M  I  I  F  R  I  L  V  L  L  I  N  L  P  S  D  I  V  S  Q  Y  N  H  A  N  V  E  A  G  E  G  V  G  L  C  N  S  K  V  N  M  C  H  V  L  F  *  F  P  E  N  V  F  *  A  F  N  S  M  *  H  F  K  L  *  T  V  R  K  H  L  D  T   </first_frame>
            <second_frame>  I  L  P  P  L  Y  T  L  H  V  R  R  R  R  C  D  L  L  L  H  L  F  R  Y  P  N  A  K  Q  T  E  I  F  S  G  Y  K  A  R  V  F  I  R  Q  *  E  V  E  E  T  C  S  *  K  T  R  S  S  S  S  S  T  I  *  F  R  F  *  T  G  T  C  F  I  I  K  E  E  I  H  E  T  N  N  S  *  K  F  S  G  S  L  S  I  G  K  Q  *  Q  E  V  E  E  A  N  C  *  K  G  R  I  W  C  S  F  T  S  *  *  R  F  R  I  *  V  *  F  G  D  A  E  Q  E  I  H  E  A  S  C  S  K  G  G  T  F  G  G  F  C  S  W  E  *  F  C  G  R  G  R  S  R  W  N  G  A  R  E  S  E  E  E  L  V  D  F  T  F  Q  K  E  A  *  E  G  *  E  S  *  R  *  R  V  C  T  C  R  *  P  C  S  G  C  R  S  *  T  E  V  A  S  S  L   : *  *  R  E  R  K  W  Y  Q  E  L  K  W  :  S  R  *  S  G  P  V  N  S  S  *  V  P  F  *  S  S  R  C  *  W  S  D  I  L  S  R  G  *  C  T  C  E   : G  C  *  W  *  G  R  L  H  L  Q  D  C  *  I  L  *  S  S  *  R  S  A  V  F  Y  S  S  V  V  L  Q  S  *  G  Y   : C  Y  *  K  P  *  S  V  H  *  Q  K  T  C  I  P  F  *  N  Q  G  *  Q  S  S  *  L  P  C  D  Q  T  K  D  C  S  C  A  L  K   : C  N  F  T  V  Q  G  K  C  K  I  K  L  *  F  L  L  *  H  E  V  L  A  S  I  L  F  L  H  *  L  A  S  * :   Y  Y  K  S  S  *  F  I  F  Y  Y  I  K  *  H  *  C  W  *  G  Q  R  T  Q  S  G  K  E  A  L  G  S  I  F  R  M  W  S  N  V  H  R  V  M  L  G  C  Q  *  Q  R  R  *  T  C  Y   : *  M  G  C  *  P  *  Q  T  C  M  *  Q  F  E  I  E  P  P  *  D  S  G  E  E  *  V  C  Q  *  F  P  I  T  S  E  G  V  G  T  A  L  C  L  L  F  L  D  K  R  Q  C  S  S  T  P  S  F  E  S  N  R  *  S  *  *  R  *  R  K  *  *  *  R  *  R  F  W  *  *  *  R  R  *  N  F  *  G  R  R  T  P  R  S  L  L  W  R  S  K  R  E  *  Q  T  W  T  L  L  Q   : G  S  L  E  R  L  W  S  R  G  R  H  L  G  A  N  R  W  L  K  :  *  L  P  E  E  N  Q  *  V  C  G  E  R  L  Q  S  K  S  F  A  V  A   : W  *  C  *  C  C  M  R  W  T  T  L  P  R  N  Q  W  V  Q  S  F  *  E  *  R  K  S  D  A  G  S  Q  K  *  T  T  *  C  L  H  G  H  C  G  F  L  E  T  Q  V  C  I  N  G  E  C  G  G  P  C  Q  I  L  Q  W  F  P  W  A  I  C  I  E  Q  T  C  R  D  E  L  P  S  T  D  G  N  D  G  S  W  C  V  W  S  S  T  I  S  Y  A  C  F  H  V  W  S  S  F  I  R   : E  V  A  T  I  S  I  A  H  T  *  S  Y  C  E  G  C  Y  S  R  R  I  *   : V  K  H  S  C  V  *  F  S  Q  G  S  R  V  K  E  R  T  L  S  W  *  C  T  F  *  S  P  F   : G  G  E  Q  *  A  K  R  *  N  A  L  H  *  *  A  *  I  *  F  P  A  F  Y  K  N  G  E  G  W :   V  V  G  K  R  T  I  *  S  S  S  S  S  V  E  R  R  *  S  S  A  C  M  S  N  S  K  A  E   : G  C  K  L  Q  G  L  A  R  S  S  C  S  A  R  *  *  S  *  M  G  P  R  R  G  E  S  K  A  T  F  W  E  A  F   : G  P  *  L  C  D  E  L  R  W  W  *  F  L  K  :  T  I  W  S  F  V  V  G  *  N  C  P  N  S  C  D  E  S  *  T  P  *  S   : D  H  S  T  S  T  T  R  *  S  A  H  N  S  *  K  C  K  A  P  R  F  S  *  L  L  Q  V  D  R  S  N  K  R  K  :  V  H  A  S  R  *  C  S  C  S  S  S  C  P  S  I  G  L  F  F  G  H  V  N  K  G  I  I  W  R  N  T  I  V  H  L  A  K  K  F  P  F  S  *  G  S  E  L  *  *  S  V  T  I  I  *  T  L  T  N  *  D  Y  Q  T  I  F  H  P  L  Y  G  G  *  L  F  L  G  S  *  F  Y  *  L  I  C  L  Q  T  L  F  H  N  T  I  M  P  M  L  K  L  V  K  A  W  V  Y  V  I  A  R  *  T  C  V  M  F  Y  S  S  S  Q  K  M  Y  F  E  H  S  I  P  C  N  I  S  S  C  K  L  *  E  N  I  *  T  H  </second_frame>
            <third_frame>   S  S  R  H  C  T  H  C  T  F  A  A  A  A  A  T  Y  Y  F  I  F  S  D  I  P  M  P  S  K  R  K  S  S  P  A  T  K  P  E  S  S  S  G  S  R  K  S  K  R  L  V  V  E  R  P  D  P  V  V  A  Q  P  S  D  S  D  F  E  P  E  P  V  L  S  S  K  K  K  S  T  R  R  T  T  A  E  S  S  V  V  A  C  Q  S  E  S  N  N  K  K  L  K  K  P  T  V  E  K  A  E  S  G  V  A  S  P  A  D  R  D  F  V  S  E  S  D  S  E  T  P  S  K  K  S  T  R  R  A  A  V  K  V  E  P  L  V  D  S  V  A  G  S  D  F  V  E  E  E  E  V  D  G  M  E  L  G  S  L  K  K  S  L  S  I  S  P  S  K  R  K  P  K  R  A  E  K  V  K  D  E  E  C  V  L  A  G  D  P  V  P  D  A  E  A  R  L  K  W  P  H  R  Y  :  N  K  G  K  E  N  G  T  K  S  L  N  G :   Q  D  D  P  D  Q  L  I  Q  A  K  C  H  F  S  R  A  D  V  D  G  Q  I  Y  Y  L  E  D  D  A  H  V  K  :  A  A  D  G  E  D  D  Y  I  C  K  I  V  E  F  F  E  A  V  D  G  V  Q  Y  F  T  A  Q  W  F  Y  R  A  K  D  T  :  V  I  K  S  H  D  Q  F  I  D  K  K  R  V  F  L  S  E  I  K  D  D  N  P  L  D  C  L  V  T  K  L  K  I  V  P  V  P  S  N  :  A  T  S  Q  F  K  E  N  V  K  S  N  C  D  F  Y  Y  D  M  K  Y  L  L  P  Y  S  S  F  I  S  L  P  P   : D  T  T  S  P  V  S  S  S  S  T  I  S  S  D  I  D  A  G  E  V  K  E  H  N  L  E  K  K  L  L  D  L  Y  S  G  C  G  A  M  S  T  G  L  C  L  G  A  N  S  K  G  V  K  L  V  T  :  K  W  A  V  D  L  N  K  H  A  C  D  S  L  R  L  N  H  P  E  T  Q  V  R  N  E  Y  A  S  D  F  L  S  L  L  K  E  W  V  Q  L  C  V  S  C  S  L  I  K  G  S  V  P  P  H  P  H  L  K  V  T  D  E  V  D  E  D  E  E  N  D  D  E  G  E  D  S  G  D  D  K  E  G  E  I  F  E  V  E  E  L  L  E  V  C  Y  G  D  P  K  E  N  N  K  P  G  L  Y  F  K  :  V  R  W  R  G  Y  G  P  E  E  D  T  W  E  P  I  D  G  L  S :   D  C  P  K  K  I  S  E  F  V  V  K  G  F  K  A  N  L  L  P  L  P  :  G  D  V  D  V  V  C  G  G  P  P  C  Q  G  I  S  G  F  N  R  F  R  N  K  E  N  P  M  Q  D  P  K  N  K  Q  L  D  V  Y  M  D  I  V  D  F  L  K  P  R  F  V  L  M  E  N  V  V  D  L  V  K  F  S  N  G  F  L  G  R  Y  A  L  S  R  L  V  G  M  N  Y  Q  A  R  M  G  M  M  A  A  G  A  Y  G  L  P  Q  F  R  M  R  V  F  M  F  G  A  L  S  S  E  :  K  L  P  Q  Y  P  L  P  T  H  K  V  I  V  R  G  V  I  P  V  E  F  E  :  S  N  T  V  A  Y  D  S  V  R  D  L  E  L  K  K  E  L  F  L  G  D  A  L  S  D  L  P  L  :  V  E  N  N  E  P  R  D  E  M  P  Y  T  D  E  P  K  S  D  F  Q  H  F  I  R  M  G  R  D   : G  L  L  G  S  V  L  Y  D  H  R  P  L  Q  L  N  E  D  D  H  Q  R  V  C  Q  I  P  K  R  K  :  G  A  N  F  R  D  L  P  G  V  R  V  R  P  D  N  K  V  E  W  D  P  D  V  E  R  V  K  L  P  S  G  K  P  L  :  V  P  D  Y  A  M  S  F  V  G  G  S  S  S  K :   P  F  G  R  L  W  W  D  E  T  V  P  T  V  V  T  R  A  E  P  H  N  Q  :  T  I  V  H  P  L  Q  D  R  V  L  T  I  R  E  N  A  R  L  Q  G  F  P  D  Y  Y  K  L  I  G  P  I  K  E  R :   Y  M  Q  V  G  N  A  V  A  V  P  V  A  R  A  L  G  Y  S  L  A  M  S  I  K  G  L  S  G  E  T  P  L  F  T  L  P  K  N  F  P  S  H  E  D  Q  N  C  N  E  V  S  Q  *  F  K  H  *  L  I  E  I  T  K  L  S  F  T  L  C  M  G  D  D  Y  F  *  D  L  S  F  I  D  *  F  A  F  R  H  C  F  T  I  Q  S  C  Q  C  *  S  W  *  R  R  G  F  M  *  *  Q  G  E  H  V  S  C  S  I  L  V  P  R  K  C  I  L  S  I  Q  F  H  V  T  F  Q  V  V  N  C  E  K  T  F  R  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21444" stop="20809"/>
                    <exon start="20537" stop="20500"/>
                    <exon start="20406" stop="20307"/>
                    <exon start="19050" stop="18943"/>
                    <exon start="18859" stop="18740"/>
                    <exon start="18659" stop="18560"/>
                    <exon start="18452" stop="18283"/>
                    <exon start="18164" stop="17835"/>
                    <exon start="17684" stop="17626"/>
                    <exon start="17541" stop="17475"/>
                    <exon start="17344" stop="17015"/>
                    <exon start="16915" stop="16847"/>
                    <exon start="16765" stop="16679"/>
                    <exon start="16586" stop="16499"/>
                    <exon start="16315" stop="16227"/>
                    <exon start="16139" stop="16035"/>
                    <exon start="15961" stop="15918"/>
                    <exon start="15812" stop="15743"/>
                    <exon start="15649" stop="15546"/>
                    <exon start="15120" stop="14958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2874</number_coding_nucleotides>
                  <number_encoded_amino_acids>958</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRHCTHCTFAAAAATYYFIFSDIPMPSKRKSSPATKPESSSGSRKSKRLVVERPDPVVAQPSDSDFEPEPVLSSKKKSTRRTTAESSVVACQSESNNKKLKKPTVEKAESGVASPADRDFVSESDSETPSKKSTRRAAVKVEPLVDSVAGSDFVEEEEVDGMELGSLKKSLSISPSKRKPKRAEKVKDEECVLAGDPVPDAEARLKWPHRYNKGKENGTKSLNGQDDPDQLIQAKCHFSRADVDGQIYYLEDDAHVKAADGEDDYICKIVEFFEAVDGVQYFTAQWFYRAKDTVIKSHDQFIDKKRVFLSEIKDDNPLDCLVTKLKIVPVPSNATSQFKENVKSNCDFYYDMKYLLPYSSFISLPPDTTSPVSSSSTISSDIDAGEVKEHNLEKKLLDLYSGCGAMSTGLCLGANSKGVKLVTKWAVDLNKHACDSLRLNHPETQVRNEYASDFLSLLKEWVQLCVSCSLIKGSVPPHPHLKVTDEVDEDEENDDEGEDSGDDKEGEIFEVEELLEVCYGDPKENNKPGLYFKVRWRGYGPEEDTWEPIDGLSDCPKKISEFVVKGFKANLLPLPGDVDVVCGGPPCQGISGFNRFRNKENPMQDPKNKQLDVYMDIVDFLKPRFVLMENVVDLVKFSNGFLGRYALSRLVGMNYQARMGMMAAGAYGLPQFRMRVFMFGALSSEKLPQYPLPTHKVIVRGVIPVEFESNTVAYDSVRDLELKKELFLGDALSDLPLVENNEPRDEMPYTDEPKSDFQHFIRMGRDGLLGSVLYDHRPLQLNEDDHQRVCQIPKRKGANFRDLPGVRVRPDNKVEWDPDVERVKLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDETVPTVVTRAEPHNQTIVHPLQDRVLTIRENARLQGFPDYYKLIGPIKERYMQVGNAVAVPVARALGYSLAMSIKGLSGETPLFTLPKNFPSHEDQNCNEVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21448" e_stop="21203"/>
            <exon e_start="21037" e_stop="20809"/>
            <exon e_start="20537" e_stop="20500"/>
            <exon e_start="20406" e_stop="20307"/>
            <exon e_start="19050" e_stop="18943"/>
            <exon e_start="18859" e_stop="18740"/>
            <exon e_start="18659" e_stop="18560"/>
            <exon e_start="18452" e_stop="18283"/>
            <exon e_start="18164" e_stop="17835"/>
            <exon e_start="17684" e_stop="17626"/>
            <exon e_start="17541" e_stop="17475"/>
            <exon e_start="17344" e_stop="17015"/>
            <exon e_start="16915" e_stop="16847"/>
            <exon e_start="16765" e_stop="16679"/>
            <exon e_start="16586" e_stop="16499"/>
            <exon e_start="16315" e_stop="16227"/>
            <exon e_start="16139" e_stop="16035"/>
            <exon e_start="15961" e_stop="15918"/>
            <exon e_start="15812" e_stop="15743"/>
            <exon e_start="15649" e_stop="15546"/>
            <exon e_start="15120" e_stop="14682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
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          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAG : GCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT : AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG : TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG : GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT : GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT : GCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTCATTAGCTTGCCTCCTG : ATACTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGACATTGATGCTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACT : AAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTCCTAGAAGTTTGTTATGGAGATCCAAAAGAGAATAACAAACCTGGACTTTACTTCAAG : GTTCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAG : TGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCT : GGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAGAG : AAGTTGCCACAATATCCATTGCCCACACATAAAGTTATTGTGAGGGGTGTTATTCCCGTAGAATTTGAG : TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG : GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG : GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG : GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG : GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA : ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG : ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG : GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</gDNA_template>
            <first_frame> L  I  L  P  P  L  Y  T  L  H  V  R  R  R  R  C  D  L  L  L  H  L  F  R  Y  P  N  A  K  Q  T  E  I  F  S  G  Y  K  A  R  V  F  I  R  Q  *  E  V  E  E  T  C  S  *  K  T  R  S  S  S  S  S  T  I  *  F  R  F  *  T  G  T  C  F  I  I  K  E  E  I  H  E  :  A  S  C  S  K  G  G  T  F  G  G  F  C  S  W  E  *  F  C  G  R  G  R  S  R  W  N  G  A  R  E  S  E  E  E  L  V  D  F  T  F  Q  K  E  A  *  E  G  *  E  S  *  R  *  R  V  C  T  C  R  *  P  C  S  G  C  R  S  *  T  E  V  A  S  S  L   : *  *  R  E  R  K  W  Y  Q  E  L  K  W  :  S  R  *  S  G  P  V  N  S  S  *  V  P  F  *  S  S  R  C  *  W  S  D  I  L  S  R  G  *  C  T  C  E   : G  C  *  W  *  G  R  L  H  L  Q  D  C  *  I  L  *  S  S  *  R  S  A  V  F  Y  S  S  V  V  L  Q  S  *  G  Y   : C  Y  *  K  P  *  S  V  H  *  Q  K  T  C  I  P  F  *  N  Q  G  *  Q  S  S  *  L  P  C  D  Q  T  K  D  C  S  C  A  L  K   : C  N  F  T  V  Q  G  K  C  K  I  K  L  *  F  L  L  *  H  E  V  L  A  S  I  L  F  L  H  *  L  A  S  * :   Y  Y  K  S  S  *  F  I  F  Y  Y  I  K  *  H  *  C  W  *  G  Q  R  T  Q  S  G  K  E  A  L  G  S  I  F  R  M  W  S  N  V  H  R  V  M  L  G  C  Q  *  Q  R  R  *  T  C  Y   : *  M  G  C  *  P  *  Q  T  C  M  *  Q  F  E  I  E  P  P  *  D  S  G  E  E  *  V  C  Q  *  F  P  I  T  S  E  G  V  G  T  A  L  C  L  L  F  L  D  K  R  Q  C  S  S  T  P  S  F  E  S  N  R  *  S  *  *  R  *  R  K  *  *  *  R  *  R  F  W  *  *  *  R  R  *  N  F  *  G  R  R  T  P  R  S  L  L  W  R  S  K  R  E  *  Q  T  W  T  L  L  Q   : G  S  L  E  R  L  W  S  R  G  R  H  L  G  A  N  R  W  L  K  :  *  L  P  E  E  N  Q  *  V  C  G  E  R  L  Q  S  K  S  F  A  V  A   : W  *  C  *  C  C  M  R  W  T  T  L  P  R  N  Q  W  V  Q  S  F  *  E  *  R  K  S  D  A  G  S  Q  K  *  T  T  *  C  L  H  G  H  C  G  F  L  E  T  Q  V  C  I  N  G  E  C  G  G  P  C  Q  I  L  Q  W  F  P  W  A  I  C  I  E  Q  T  C  R  D  E  L  P  S  T  D  G  N  D  G  S  W  C  V  W  S  S  T  I  S  Y  A  C  F  H  V  W  S  S  F  I  R   : E  V  A  T  I  S  I  A  H  T  *  S  Y  C  E  G  C  Y  S  R  R  I  *   : V  K  H  S  C  V  *  F  S  Q  G  S  R  V  K  E  R  T  L  S  W  *  C  T  F  *  S  P  F   : G  G  E  Q  *  A  K  R  *  N  A  L  H  *  *  A  *  I  *  F  P  A  F  Y  K  N  G  E  G  W :   V  V  G  K  R  T  I  *  S  S  S  S  S  V  E  R  R  *  S  S  A  C  M  S  N  S  K  A  E   : G  C  K  L  Q  G  L  A  R  S  S  C  S  A  R  *  *  S  *  M  G  P  R  R  G  E  S  K  A  T  F  W  E  A  F   : G  P  *  L  C  D  E  L  R  W  W  *  F  L  K  :  T  I  W  S  F  V  V  G  *  N  C  P  N  S  C  D  E  S  *  T  P  *  S   : D  H  S  T  S  T  T  R  *  S  A  H  N  S  *  K  C  K  A  P  R  F  S  *  L  L  Q  V  D  R  S  N  K  R  K  :  V  H  A  S  R  *  C  S  C  S  S  S  C  P  S  I  G  L  F  F  G  H  V  N  K  G  I  I  W  R  N  T  I  V  H  L  A  K  K  F  P  F  S  *  G  S  E  L  *  *  S  V  T  I  I  *  T  L  T  N  *  D  Y  Q  T  I  F  H  P  L  Y  G  G  *  L  F  L  G  S  *  F  Y  *  L  I  C  L  Q  T  L  F  H  N  T  I  M  P  M  L  K  L  V  K  A  W  V  Y  V  I  A  R  *  T  C  V  M  F  Y  S  S  S  Q  K  M  Y  F  E  H  S  I  P  C  N  I  S  S  C  K  L  *  E  N  I  *  T  H  </first_frame>
            <second_frame>  S  S  S  R  H  C  T  H  C  T  F  A  A  A  A  A  T  Y  Y  F  I  F  S  D  I  P  M  P  S  K  R  K  S  S  P  A  T  K  P  E  S  S  S  G  S  R  K  S  K  R  L  V  V  E  R  P  D  P  V  V  A  Q  P  S  D  S  D  F  E  P  E  P  V  L  S  S  K  K  K  S  T  R :   R  A  A  V  K  V  E  P  L  V  D  S  V  A  G  S  D  F  V  E  E  E  E  V  D  G  M  E  L  G  S  L  K  K  S  L  S  I  S  P  S  K  R  K  P  K  R  A  E  K  V  K  D  E  E  C  V  L  A  G  D  P  V  P  D  A  E  A  R  L  K  W  P  H  R  Y  :  N  K  G  K  E  N  G  T  K  S  L  N  G :   Q  D  D  P  D  Q  L  I  Q  A  K  C  H  F  S  R  A  D  V  D  G  Q  I  Y  Y  L  E  D  D  A  H  V  K  :  A  A  D  G  E  D  D  Y  I  C  K  I  V  E  F  F  E  A  V  D  G  V  Q  Y  F  T  A  Q  W  F  Y  R  A  K  D  T  :  V  I  K  S  H  D  Q  F  I  D  K  K  R  V  F  L  S  E  I  K  D  D  N  P  L  D  C  L  V  T  K  L  K  I  V  P  V  P  S  N  :  A  T  S  Q  F  K  E  N  V  K  S  N  C  D  F  Y  Y  D  M  K  Y  L  L  P  Y  S  S  F  I  S  L  P  P   : D  T  T  S  P  V  S  S  S  S  T  I  S  S  D  I  D  A  G  E  V  K  E  H  N  L  E  K  K  L  L  D  L  Y  S  G  C  G  A  M  S  T  G  L  C  L  G  A  N  S  K  G  V  K  L  V  T  :  K  W  A  V  D  L  N  K  H  A  C  D  S  L  R  L  N  H  P  E  T  Q  V  R  N  E  Y  A  S  D  F  L  S  L  L  K  E  W  V  Q  L  C  V  S  C  S  L  I  K  G  S  V  P  P  H  P  H  L  K  V  T  D  E  V  D  E  D  E  E  N  D  D  E  G  E  D  S  G  D  D  K  E  G  E  I  F  E  V  E  E  L  L  E  V  C  Y  G  D  P  K  E  N  N  K  P  G  L  Y  F  K  :  V  R  W  R  G  Y  G  P  E  E  D  T  W  E  P  I  D  G  L  S :   D  C  P  K  K  I  S  E  F  V  V  K  G  F  K  A  N  L  L  P  L  P  :  G  D  V  D  V  V  C  G  G  P  P  C  Q  G  I  S  G  F  N  R  F  R  N  K  E  N  P  M  Q  D  P  K  N  K  Q  L  D  V  Y  M  D  I  V  D  F  L  K  P  R  F  V  L  M  E  N  V  V  D  L  V  K  F  S  N  G  F  L  G  R  Y  A  L  S  R  L  V  G  M  N  Y  Q  A  R  M  G  M  M  A  A  G  A  Y  G  L  P  Q  F  R  M  R  V  F  M  F  G  A  L  S  S  E  :  K  L  P  Q  Y  P  L  P  T  H  K  V  I  V  R  G  V  I  P  V  E  F  E  :  S  N  T  V  A  Y  D  S  V  R  D  L  E  L  K  K  E  L  F  L  G  D  A  L  S  D  L  P  L  :  V  E  N  N  E  P  R  D  E  M  P  Y  T  D  E  P  K  S  D  F  Q  H  F  I  R  M  G  R  D   : G  L  L  G  S  V  L  Y  D  H  R  P  L  Q  L  N  E  D  D  H  Q  R  V  C  Q  I  P  K  R  K  :  G  A  N  F  R  D  L  P  G  V  R  V  R  P  D  N  K  V  E  W  D  P  D  V  E  R  V  K  L  P  S  G  K  P  L  :  V  P  D  Y  A  M  S  F  V  G  G  S  S  S  K :   P  F  G  R  L  W  W  D  E  T  V  P  T  V  V  T  R  A  E  P  H  N  Q  :  T  I  V  H  P  L  Q  D  R  V  L  T  I  R  E  N  A  R  L  Q  G  F  P  D  Y  Y  K  L  I  G  P  I  K  E  R :   Y  M  Q  V  G  N  A  V  A  V  P  V  A  R  A  L  G  Y  S  L  A  M  S  I  K  G  L  S  G  E  T  P  L  F  T  L  P  K  N  F  P  S  H  E  D  Q  N  C  N  E  V  S  Q  *  F  K  H  *  L  I  E  I  T  K  L  S  F  T  L  C  M  G  D  D  Y  F  *  D  L  S  F  I  D  *  F  A  F  R  H  C  F  T  I  Q  S  C  Q  C  *  S  W  *  R  R  G  F  M  *  *  Q  G  E  H  V  S  C  S  I  L  V  P  R  K  C  I  L  S  I  Q  F  H  V  T  F  Q  V  V  N  C  E  K  T  F  R  H  I </second_frame>
            <third_frame>   H  P  P  A  T  V  H  T  A  R  S  P  P  P  L  R  P  T  T  S  S  F  Q  I  S  Q  C  Q  A  N  G  N  L  L  R  L  Q  S  Q  S  L  H  P  A  V  G  S  R  R  D  L  *  L  K  D  Q  I  Q  *  *  L  N  H  L  I  P  I  L  N  R  N  L  F  Y  H  Q  R  R  N  P  R   : G  E  L  Q  *  R  W  N  L  W  W  I  L  *  L  G  V  I  L  W  K  R  K  K  *  M  E  W  S  *  G  V  *  R  R  A  C  R  F  H  L  P  K  G  S  L  R  G  L  R  K  L  K  M  K  S  V  Y  L  P  V  T  L  F  R  M  Q  K  L  D  *  S  G  L  I  A  I :   I  K  G  K  K  M  V  P  R  A  *  M   : V  K  M  I  R  T  S  *  F  K  L  S  A  I  L  V  E  Q  M  L  M  V  R  Y  I  I  S  R  M  M  H  M  *  R :   L  L  M  V  R  T  I  T  F  A  R  L  L  N  S  L  K  Q  L  T  E  C  S  I  L  Q  L  S  G  F  T  E  L  R  I  L :   L  L  K  A  M  I  S  S  L  T  K  N  V  Y  S  F  L  K  S  R  M  T  I  L  L  I  A  L  *  P  N  *  R  L  F  L  C  P  Q  M :   Q  L  H  S  S  R  K  M  *  N  Q  I  V  I  S  T  M  T  *  S  T  C  F  H  T  L  P  S  L  A  C  L  L  :  I  L  Q  V  Q  L  V  H  L  L  L  Y  Q  V  T  L  M  L  V  R  S  K  N  T  I  W  K  R  S  S  W  I  Y  I  Q  D  V  E  Q  C  P  Q  G  Y  A  W  V  P  I  A  K  A  L  N  L  L  L :   N  G  L  L  T  L  T  N  M  H  V  T  V  *  D  *  T  T  L  R  L  R  *  G  M  S  M  P  V  I  S  Y  H  F  *  R  S  G  Y  S  S  V  S  L  V  P  *  *  K  A  V  F  L  H  T  L  I  *  K  *  Q  M  K  L  M  K  M  K  K  M  M  M  K  V  K  I  L  V  M  I  K  K  V  K  F  L  R  S  K  N  S  *  K  F  V  M  E  I  Q  K  R  I  T  N  L  D  F  T  S  R :   F  A  G  E  V  M  V  Q  R  K  T  P  G  S  Q  *  M  A  *   : V  T  A  R  R  K  S  V  S  L  W  *  K  A  S  K  Q  I  F  C  R  C  L :   V  M  L  M  L  Y  A  V  D  H  L  A  K  E  S  V  G  S  I  V  L  G  I  K  K  I  R  C  R  I  P  K  I  N  N  L  M  S  T  W  T  L  W  I  S  *  N  P  G  L  Y  *  W  R  M  W  W  T  L  S  N  S  P  M  V  S  L  G  D  M  H  *  A  D  L  *  G  *  T  T  K  H  G  W  E  *  W  Q  L  V  R  M  V  F  H  N  F  V  C  V  F  S  C  L  E  L  F  H  Q  R :   S  C  H  N  I  H  C  P  H  I  K  L  L  *  G  V  L  F  P  *  N  L  S :   Q  T  Q  L  R  M  I  Q  S  G  I  S  S  *  R  K  N  S  F  L  V  M  H  F  L  I  S  L  W :   W  R  T  M  S  Q  E  M  K  C  L  T  L  M  S  L  N  L  I  S  S  I  L  *  E  W  G  G  M  :  G  C  W  E  A  Y  Y  M  I  I  V  L  F  S  *  T  K  M  I  I  S  V  Y  V  K  F  Q  S  G  R :   V  Q  T  S  G  T  C  P  E  F  V  F  G  Q  I  I  K  L  N  G  T  Q  T  W  R  E  *  S  Y  L  L  G  S  L  W :   S  L  T  M  R  *  A  S  L  V  V  V  P  Q   : N  H  L  V  V  C  G  G  M  K  L  S  Q  Q  L  *  R  E  L  N  P  I  I  R :   P  *  Y  I  H  Y  K  I  E  C  S  Q  F  V  K  M  Q  G  S  K  V  F  L  T  T  T  S  *  *  V  Q  *  K  K   : G  T  C  K  *  V  M  Q  L  Q  F  Q  L  P  E  H  W  A  I  L  W  P  C  Q  *  R  D  Y  L  E  K  H  H  C  S  P  C  Q  K  I  S  L  L  M  R  I  R  I  V  M  K  C  H  N  N  L  N  I  N  *  L  R  L  P  N  Y  L  S  P  S  V  W  G  M  I  I  F  R  I  L  V  L  L  I  N  L  P  S  D  I  V  S  Q  Y  N  H  A  N  V  E  A  G  E  G  V  G  L  C  N  S  K  V  N  M  C  H  V  L  F  *  F  P  E  N  V  F  *  A  F  N  S  M  *  H  F  K  L  *  T  V  R  K  H  L  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21447" stop="21203"/>
                    <exon start="21037" stop="20809"/>
                    <exon start="20537" stop="20500"/>
                    <exon start="20406" stop="20307"/>
                    <exon start="19050" stop="18943"/>
                    <exon start="18859" stop="18740"/>
                    <exon start="18659" stop="18560"/>
                    <exon start="18452" stop="18283"/>
                    <exon start="18164" stop="17835"/>
                    <exon start="17684" stop="17626"/>
                    <exon start="17541" stop="17475"/>
                    <exon start="17344" stop="17015"/>
                    <exon start="16915" stop="16847"/>
                    <exon start="16765" stop="16679"/>
                    <exon start="16586" stop="16499"/>
                    <exon start="16315" stop="16227"/>
                    <exon start="16139" stop="16035"/>
                    <exon start="15961" stop="15918"/>
                    <exon start="15812" stop="15743"/>
                    <exon start="15649" stop="15546"/>
                    <exon start="15120" stop="14958"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2712</number_coding_nucleotides>
                  <number_encoded_amino_acids>904</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSRHCTHCTFAAAAATYYFIFSDIPMPSKRKSSPATKPESSSGSRKSKRLVVERPDPVVAQPSDSDFEPEPVLSSKKKSTRRAAVKVEPLVDSVAGSDFVEEEEVDGMELGSLKKSLSISPSKRKPKRAEKVKDEECVLAGDPVPDAEARLKWPHRYNKGKENGTKSLNGQDDPDQLIQAKCHFSRADVDGQIYYLEDDAHVKAADGEDDYICKIVEFFEAVDGVQYFTAQWFYRAKDTVIKSHDQFIDKKRVFLSEIKDDNPLDCLVTKLKIVPVPSNATSQFKENVKSNCDFYYDMKYLLPYSSFISLPPDTTSPVSSSSTISSDIDAGEVKEHNLEKKLLDLYSGCGAMSTGLCLGANSKGVKLVTKWAVDLNKHACDSLRLNHPETQVRNEYASDFLSLLKEWVQLCVSCSLIKGSVPPHPHLKVTDEVDEDEENDDEGEDSGDDKEGEIFEVEELLEVCYGDPKENNKPGLYFKVRWRGYGPEEDTWEPIDGLSDCPKKISEFVVKGFKANLLPLPGDVDVVCGGPPCQGISGFNRFRNKENPMQDPKNKQLDVYMDIVDFLKPRFVLMENVVDLVKFSNGFLGRYALSRLVGMNYQARMGMMAAGAYGLPQFRMRVFMFGALSSEKLPQYPLPTHKVIVRGVIPVEFESNTVAYDSVRDLELKKELFLGDALSDLPLVENNEPRDEMPYTDEPKSDFQHFIRMGRDGLLGSVLYDHRPLQLNEDDHQRVCQIPKRKGANFRDLPGVRVRPDNKVEWDPDVERVKLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDETVPTVVTRAEPHNQTIVHPLQDRVLTIRENARLQGFPDYYKLIGPIKERYMQVGNAVAVPVARALGYSLAMSIKGLSGETPLFTLPKNFPSHEDQNCNEVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14730" PGL_stop="15093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14730" e_stop="15093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="14730" e_stop="15093" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14730" stop="15093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTGAATGCTCAAAATACATTTTCTGGGAACTAGAATAGAACATGACACATGTTCACCTTGCTATTACATAAACCCACGCCTTCACCAGCTTCAACATTGGCATGATTGTATTGTGAAACAATGTCTGAAGGCAAATTAATCAATAAAACTAAGATCCTAAAAATAATCATCCCCCATACAGAGGGTGAAAGATAGTTTGGTAATCTCAATTAGTTAATGTTTAAATTATTGTGACACTTCATTACAATTCTGATCCTCATGAGAAGGGAAATTTTTTGGCAAGGTGAACAATGGTGTTTCTCCAGATAATCCCTTTATTGACATGGCCAAAGAATAGCCCAATGCTCGGGCAACTGGAACT</gDNA_template>
            <first_frame> E  L  N  A  Q  N  T  F  S  G  N  *  N  R  T  *  H  M  F  T  L  L  L  H  K  P  T  P  S  P  A  S  T  L  A  *  L  Y  C  E  T  M  S  E  G  K  L  I  N  K  T  K  I  L  K  I  I  I  P  H  T  E  G  E  R  *  F  G  N  L  N  *  L  M  F  K  L  L  *  H  F  I  T  I  L  I  L  M  R  R  E  I  F  W  Q  G  E  Q  W  C  F  S  R  *  S  L  Y  *  H  G  Q  R  I  A  Q  C  S  G  N  W  N  </first_frame>
            <second_frame>  N  *  M  L  K  I  H  F  L  G  T  R  I  E  H  D  T  C  S  P  C  Y  Y  I  N  P  R  L  H  Q  L  Q  H  W  H  D  C  I  V  K  Q  C  L  K  A  N  *  S  I  K  L  R  S  *  K  *  S  S  P  I  Q  R  V  K  D  S  L  V  I  S  I  S  *  C  L  N  Y  C  D  T  S  L  Q  F  *  S  S  *  E  G  K  F  F  G  K  V  N  N  G  V  S  P  D  N  P  F  I  D  M  A  K  E  *  P  N  A  R  A  T  G  T </second_frame>
            <third_frame>   I  E  C  S  K  Y  I  F  W  E  L  E  *  N  M  T  H  V  H  L  A  I  T  *  T  H  A  F  T  S  F  N  I  G  M  I  V  L  *  N  N  V  *  R  Q  I  N  Q  *  N  *  D  P  K  N  N  H  P  P  Y  R  G  *  K  I  V  W  *  S  Q  L  V  N  V  *  I  I  V  T  L  H  Y  N  S  D  P  H  E  K  G  N  F  L  A  R  *  T  M  V  F  L  Q  I  I  P  L  L  T  W  P  K  N  S  P  M  L  G  Q  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22599" PGL_stop="24848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23972" e_stop="23972"/>
            <exon e_start="24111" e_stop="24122"/>
            <exon e_start="24190" e_stop="24848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.507" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.942" e_score="0.583"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23972" e_stop="23972" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.507" acc_prob="0.956">
            <gDNA_intron_boundary i_start="23973" i_stop="24110" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="0.583">
            <gDNA_exon_boundary e_start="24111" e_stop="24122" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.808" acc_prob="0.942">
            <gDNA_intron_boundary i_start="24123" i_stop="24189" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="24190" e_stop="24848" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23972" stop="23972"/>
              <exon start="24111" stop="24122"/>
              <exon start="24190" stop="24567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>T : ATGCATTTACTG : GACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAGAAAAAAGAGTTATCCAGGCTTATTTCTTGGGTGAAGTTAGGGGAGAATTGTCAGATAGCTGATCTTTGGAGATTAGAGAGGCCTTGG</gDNA_template>
            <first_frame>  : Y  A  F  T   : G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A  Y  K  A  C  E  S  Q  V  T  Q  Q  C  E  S  G  A  R  I  G  C  S  I  A  A  S  D  K  C  K  T  P  W  W  K  S  F  T  G  S  A  S  N  Q  D  F  A  E  R  A  R  C  E  E  R  E  M  E  A  C  L  E  A  A  N  G  K  C  H  E  F  A  K  Q  K  C  F  P  A  F  R  D  A  W  I  G  V  K  G  L  S  P  K  V  K  K  K  E  L  S  R  L  I  S  W  V  K  L  G  E  N  C  Q  I  A  D  L  W  R  L  E  R  P  W </first_frame>
            <second_frame>  :  M  H  L  L  :  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L  H  T  R  L  V  N  L  K  S  L  N  N  V  N  L  E  L  G  L  V  A  L  S  Q  P  Q  T  N  V  K  L  L  G  G  N  H  S  L  A  V  L  P  I  K  T  L  Q  R  G  R  D  A  K  N  V  K  W  R  L  A  L  K  Q  Q  M  G  S  A  M  N  L  Q  S  R  S  A  S  Q  H  F  V  M  H  G  L  V  *  K  D  *  V  P  K  *  R  K  K  S  Y  P  G  L  F  L  G  *  S  *  G  R  I  V  R  *  L  I  F  G  D  *  R  G  L   </second_frame>
            <third_frame>  :   C  I  Y  W :   T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  I  Q  G  L  *  I  S  S  H  S  T  M  *  I  W  S  *  D  W  L  L  Y  R  S  L  R  Q  M  *  N  S  L  V  E  I  I  H  W  Q  C  F  Q  S  R  L  C  R  E  G  E  M  R  R  T  *  N  G  G  L  P  *  S  S  K  W  E  V  P  *  I  C  K  A  E  V  L  P  S  I  S  *  C  M  D  W  C  K  R  I  E  S  Q  S  E  E  K  R  V  I  Q  A  Y  F  L  G  E  V  R  G  E  L  S  D  S  *  S  L  E  I  R  E  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23972" stop="24122"/>
                    <exon start="24190" stop="24848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAFTGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASAYKACESQVTQQCESGARIGCSIAASDKCKTPWWKSFTGSASNQDFAERARCEEREMEACLEAANGKCHEFAKQKCFPAFRDAWIGVKGLSPKVKKKELSRLISWVKLGENCQIADLWRLERPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22599" e_stop="22624"/>
            <exon e_start="24111" e_stop="24848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22599" e_stop="22624" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.956">
            <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="24111" e_stop="24848" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22599" stop="22624"/>
              <exon start="24111" stop="24479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCTTTCTCTCTATCAATTTGTAG : ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAACTCCTTGGTGGAAATCATTCACTGGCAGTGCTTCCAATCAAGACTTTGCAGAGAGGGCGAGATGCGAAGAACGTGAAATGGAGGCTTGCCTTGAAGCAGCAAATGGGAAGTGCCATGAATTTGCAAAGCAGAAGTGCTTCCCAGCATTTCGTGATGCATGGATTGGTGTAAAAGGATTGAGTCCCAAAGTGAAGAAAAAAGAGTTATCCAGGCTTATTTCTTGGGTGAAGTTAGGGGAGAATTGTCAGATAGCTGATCTTTGGAGATTAGAGAGGCCTTGG</gDNA_template>
            <first_frame> N  S  F  S  L  S  I  C  R :   C  I  Y  W  *  *  Y  Q  F  S  L  E  K  T  T  L  S  I  L  I  L  V  S  S  L  Q  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L  H  T  R  L  V  N  L  K  S  L  N  N  V  N  L  E  L  G  L  V  A  L  S  Q  P  Q  T  N  V  K  L  L  G  G  N  H  S  L  A  V  L  P  I  K  T  L  Q  R  G  R  D  A  K  N  V  K  W  R  L  A  L  K  Q  Q  M  G  S  A  M  N  L  Q  S  R  S  A  S  Q  H  F  V  M  H  G  L  V  *  K  D  *  V  P  K  *  R  K  K  S  Y  P  G  L  F  L  G  *  S  *  G  R  I  V  R  *  L  I  F  G  D  *  R  G  L   </first_frame>
            <second_frame>  T  L  S  L  Y  Q  F  V   : D  A  F  T  G  D  D  I  N  S  A  L  R  K  L  L  *  V  S  *  Y  W  F  R  L  F  R  T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  I  Q  G  L  *  I  S  S  H  S  T  M  *  I  W  S  *  D  W  L  L  Y  R  S  L  R  Q  M  *  N  S  L  V  E  I  I  H  W  Q  C  F  Q  S  R  L  C  R  E  G  E  M  R  R  T  *  N  G  G  L  P  *  S  S  K  W  E  V  P  *  I  C  K  A  E  V  L  P  S  I  S  *  C  M  D  W  C  K  R  I  E  S  Q  S  E  E  K  R  V  I  Q  A  Y  F  L  G  E  V  R  G  E  L  S  D  S  *  S  L  E  I  R  E  A  L  </second_frame>
            <third_frame>   L  F  L  S  I  N  L  *  :  M  H  L  L  V  M  I  S  I  Q  P  *  E  N  Y  F  E  Y  P  D  I  G  F  V  S  S  G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A  Y  K  A  C  E  S  Q  V  T  Q  Q  C  E  S  G  A  R  I  G  C  S  I  A  A  S  D  K  C  K  T  P  W  W  K  S  F  T  G  S  A  S  N  Q  D  F  A  E  R  A  R  C  E  E  R  E  M  E  A  C  L  E  A  A  N  G  K  C  H  E  F  A  K  Q  K  C  F  P  A  F  R  D  A  W  I  G  V  K  G  L  S  P  K  V  K  K  K  E  L  S  R  L  I  S  W  V  K  L  G  E  N  C  Q  I  A  D  L  W  R  L  E  R  P  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24147" stop="24848"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENYFEYPDIGFVSSGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASAYKACESQVTQQCESGARIGCSIAASDKCKTPWWKSFTGSASNQDFAERARCEEREMEACLEAANGKCHEFAKQKCFPAFRDAWIGVKGLSPKVKKKELSRLISWVKLGENCQIADLWRLERPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26687" PGL_stop="36238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26687" e_stop="27065"/>
            <exon e_start="28092" e_stop="28220"/>
            <exon e_start="28331" e_stop="28404"/>
            <exon e_start="28490" e_stop="28559"/>
            <exon e_start="30422" e_stop="30477"/>
            <exon e_start="30633" e_stop="30704"/>
            <exon e_start="30852" e_stop="30946"/>
            <exon e_start="31030" e_stop="31096"/>
            <exon e_start="31183" e_stop="31312"/>
            <exon e_start="31422" e_stop="31640"/>
            <exon e_start="31729" e_stop="31865"/>
            <exon e_start="33757" e_stop="33931"/>
            <exon e_start="34200" e_stop="34290"/>
            <exon e_start="34495" e_stop="34652"/>
            <exon e_start="35518" e_stop="35706"/>
            <exon e_start="35966" e_stop="36238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26687" e_stop="27065" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27066" i_stop="28091" i_length="1026"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28092" e_stop="28220" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28221" i_stop="28330" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28331" e_stop="28404" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="28405" i_stop="28489" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28490" e_stop="28559" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.625" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28560" i_stop="30421" i_length="1862"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30422" e_stop="30477" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.992">
            <gDNA_intron_boundary i_start="30478" i_stop="30632" i_length="155"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30633" e_stop="30704" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30705" i_stop="30851" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30852" e_stop="30946" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.946">
            <gDNA_intron_boundary i_start="30947" i_stop="31029" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31030" e_stop="31096" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.976">
            <gDNA_intron_boundary i_start="31097" i_stop="31182" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31183" e_stop="31312" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.932">
            <gDNA_intron_boundary i_start="31313" i_stop="31421" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31422" e_stop="31640" e_length="219"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31641" i_stop="31728" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31729" e_stop="31865" e_length="137"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31866" i_stop="33756" i_length="1891"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33757" e_stop="33931" e_length="175"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33932" i_stop="34199" i_length="268"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="34200" e_stop="34290" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.713" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34291" i_stop="34494" i_length="204"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="34495" e_stop="34652" e_length="158"/>
          </exon>
          <intron i_serial="14" don_prob="0.970" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34653" i_stop="35517" i_length="865"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="35518" e_stop="35706" e_length="189"/>
          </exon>
          <intron i_serial="15" don_prob="0.925" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35707" i_stop="35965" i_length="259"/>
          </intron>
          <exon e_serial="16" e_score="0.988">
            <gDNA_exon_boundary e_start="35966" e_stop="36238" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26687" stop="27065"/>
              <exon start="28092" stop="28220"/>
              <exon start="28331" stop="28395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26702" stop="27065"/>
              <exon start="28092" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26770" stop="27065"/>
              <exon start="28092" stop="28220"/>
              <exon start="28331" stop="28404"/>
              <exon start="28490" stop="28559"/>
              <exon start="30422" stop="30477"/>
              <exon start="30633" stop="30671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26819" stop="27065"/>
              <exon start="28092" stop="28220"/>
              <exon start="28331" stop="28404"/>
              <exon start="28490" stop="28497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="28220"/>
              <exon start="28331" stop="28404"/>
              <exon start="28490" stop="28559"/>
              <exon start="30422" stop="30477"/>
              <exon start="30633" stop="30704"/>
              <exon start="30852" stop="30946"/>
              <exon start="31030" stop="31096"/>
              <exon start="31183" stop="31247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="28220"/>
              <exon start="28331" stop="28404"/>
              <exon start="28490" stop="28559"/>
              <exon start="30422" stop="30477"/>
              <exon start="30633" stop="30704"/>
              <exon start="30852" stop="30943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30458" stop="30477"/>
              <exon start="30633" stop="30704"/>
              <exon start="30852" stop="30946"/>
              <exon start="31030" stop="31096"/>
              <exon start="31183" stop="31312"/>
              <exon start="31422" stop="31519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30883" stop="30946"/>
              <exon start="31030" stop="31096"/>
              <exon start="31183" stop="31312"/>
              <exon start="31422" stop="31628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31092" stop="31096"/>
              <exon start="31183" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31865"/>
              <exon start="33757" stop="33843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31188" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31191" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31865"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31191" stop="31312"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31191" stop="31312"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31191" stop="31312"/>
              <exon start="31422" stop="31640"/>
              <exon start="31729" stop="31766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31193" stop="31312"/>
              <exon start="31422" stop="31608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31295" stop="31312"/>
              <exon start="31422" stop="31640"/>
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              <exon start="34200" stop="34290"/>
              <exon start="34495" stop="34652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31436" stop="31640"/>
              <exon start="31729" stop="31865"/>
              <exon start="33757" stop="33931"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31458" stop="31640"/>
              <exon start="31729" stop="31865"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31565" stop="31640"/>
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              <exon start="35518" stop="35564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31565" stop="31640"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31565" stop="31640"/>
              <exon start="31729" stop="31865"/>
              <exon start="33757" stop="33925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31740" stop="31865"/>
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              <exon start="35518" stop="35574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31760" stop="31865"/>
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              <exon start="35518" stop="35608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31760" stop="31865"/>
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              <exon start="35518" stop="35592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31760" stop="31865"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34226" stop="34290"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34245" stop="34290"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35596" stop="35706"/>
              <exon start="35966" stop="36238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35597" stop="35706"/>
              <exon start="35966" stop="36222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTTGATATTTCTTTTGGATGTTTCTTCAACAAACCCTAGCATCAAGACCTCTTTAATCTTACTGCTCATTCATCTTTCTATTTGTTTCGATCGCTGTTGAAAACTTGTTGAAGAATTCAAACGATCAATTTTGTATTGATGATGGTCACTTTGGGTTTTGTTCTACTTGCATTGTTTGTAAAGAACGCTAATGCCTGTAGGTGTTGAAAAACCAGCAGCCAGCGGGAAGGGAAGAAGTTTCGTAAAGACCTGTGCTGCTAAGGCAAAAGCAGAAGAGTTGAAGAGGAAATGGGGGATCAGAGCGGTGGGTTGAGTGCTAATAACAAAGGAACTGAGCAAGATGATGATGGTAAAAACTCTCCTATCCCTAAAAAG : GTGAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG : GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG : GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC : GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG : TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG : CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG : AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG : GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCCAAAAG : ATTCTTCAAGTTGGCCAAAAGCGGGGGAGATTAAATGTAGAGGAGGGGGAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG : GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG : GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG : GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG : GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG : GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGTTCGGT</gDNA_template>
            <first_frame> F  C  *  Y  F  F  W  M  F  L  Q  Q  T  L  A  S  R  P  L  *  S  Y  C  S  F  I  F  L  F  V  S  I  A  V  E  N  L  L  K  N  S  N  D  Q  F  C  I  D  D  G  H  F  G  F  C  S  T  C  I  V  C  K  E  R  *  C  L  *  V  L  K  N  Q  Q  P  A  G  R  E  E  V  S  *  R  P  V  L  L  R  Q  K  Q  K  S  *  R  G  N  G  G  S  E  R  W  V  E  C  *  *  Q  R  N  *  A  R  *  *  W  *  K  L  S  Y  P  *  K   : G  E  S  R  N  V  A  S  L  S  G  *  K  E  V  R  *  R  W  V  W  S  G  L  F  G  S  S  S  F  W  W  K  *  I  F  K  W  S  R  G  C  *   : G  C  T  E  I  *  A  Y  E  K  Q  R  L  *  L  W  S  S  T  *  V  A  S  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  R  A  L  *  R  E  G  R  R  L  L  R  N   : G  Y  G  H  A  R  A  *  L  M  G  C  M  E  F  L  W  A  G  :  D  V  C  R  N  G  S  M  Y  C  S  *  V  S  V  N  F  K  H  N  A  C  T  R  :  L  C  A  W  R  C  K  A  R  E  L  F  A  W  S  A  I  N  S  A  G  E  E  V  V  P  C  R  L  G  T  S :   N  K  V  E  R  E  C  E  R  S  A  C  G  I  *  S  A  T  *  H  V  *  :  R  D  C  S  V  C  K  C  S  C  T  L  G  K  D  C  Q  *  K  R  *  S  G  I  T  C  I  Y  T  H  F  S  S  Q  R  Q  V  A  M  A  R  I  S   : G  R  *  Q  I  V  F  G  L  Q  K  E  D  G  N  I  S  R  N  A  L  L  F  L  S  I  T  S  E  R  I  S  *  Y  S  N  K  H  E  I  *  *  R  T  *  L  F  E  V  N  L  L  I  W  E  L  A  W  T  *  S  C  Y  K  A  N  Q  H  *  W  C  P  K   : D  S  S  S  W  P  K  A  G  E  I  K  C  R  G  G  G  R  A  A  *  K  E  G  S  H  R  S  S  C  I  T  V  D  F  D  L  Q  C  *  E  A  H  E  T  E  :  V  P  L  *  C  N  R  Y  K  T  S  R  A  C  G  E  R  D  *  R  W  I  I  H  K  L  C  G  I  L  F  R  L  L  G  Y  Y  H  G  C  W  N  Q  F  H  *  P  S  L  *  A  I  T  I  I  L  A  Q   : G  V  G  Y  G  T  V  G  E  E  L  L  Y  *  F  S  C  W  C  Y  Q  W  K  L  S  C  C  N  V  K  R :   H  T  V  Q  S  A  V  L  *  S  K  *  V  I  P  I  Q  V  D  K  Q  E  V  E  R  R  V  Q  C  N  L  H  G  N  C  W  K  *  V  G  G  C  Y  V  S  *  F  R  C  Q  *  P   : G  S  G  A  *  F  S  L  S  K  *  R  H  S  *  T  M  G  Q  W  L  S  Y  Y  S  N  S  C  Y  I  R  S  S  C  S  Y  P  E  C  A  S  T  K  A  W  R  *  D  S  G  D  I  E  N  I  S  V  S  K  H  T  C  *   : G  K  M  G  K  K  S  L  S  F  L  S  L  L  W  T  N  C  I  L  R  G  W  K  I  *  C  W  T  F  F  L  H  P  F  Y  F  L  I  V  S  Q  L  *  K  V  R  K  S  *  L  W  W  H  L  L  L  L  A  C  L  D  S  G  K  L  S  R  L  L  C  T  Y  N  *  Q  H  K  I  T  N  L  *  I  F  Y  I  C  C  V  R  </first_frame>
            <second_frame>  F  V  D  I  S  F  G  C  F  F  N  K  P  *  H  Q  D  L  F  N  L  T  A  H  S  S  F  Y  L  F  R  S  L  L  K  T  C  *  R  I  Q  T  I  N  F  V  L  M  M  V  T  L  G  F  V  L  L  A  L  F  V  K  N  A  N  A  C  R  C  *  K  T  S  S  Q  R  E  G  K  K  F  R  K  D  L  C  C  *  G  K  S  R  R  V  E  E  E  M  G  D  Q  S  G  G  L  S  A  N  N  K  G  T  E  Q  D  D  D  G  K  N  S  P  I  P  K  K  :  V  K  V  G  M  S  P  V  Y  Q  V  E  R  K  L  G  K  G  G  F  G  Q  V  F  L  G  R  R  L  S  G  G  N  E  S  S  N  G  Q  G  A  V  E  :  V  A  L  K  F  E  H  M  K  S  K  G  C  N  Y  G  P  P  H  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  S  V  H  Y  K  G  R  V  G  D  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  A :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  S  I  M  H  A  Q  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  L  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  R  E  N  V  K  G  P  H  V  V  Y  D  Q  R  P  D  M  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  F  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  S  P  L  R  E  F  L  D  I  V  I  N  M  K  F  D  E  E  P  N  Y  S  K  L  I  S  L  F  G  S  L  L  G  P  D  P  A  I  R  P  I  N  T  D  G  A  Q  K  :  I  L  Q  V  G  Q  K  R  G  R  L  N  V  E  E  G  E  E  Q  P  R  K  K  V  R  I  G  V  P  A  S  Q  W  I  S  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  T  D  T  R  L  A  E  H  V  E  K  G  T  E  D  G  L  Y  I  S  C  V  A  S  C  S  D  F  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  Q  S  F  L  H  K  :  E  W  V  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  A  T  N  G  S  S  L  V  V  M  S  K   : G  T  Q  F  S  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  N  V  T  S  M  A  T  A  G  S  R  W  A  V  V  M  S  R  N  S  G  V  S  N  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  L  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  A  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  E  D  G  K  S  D  V  G  H  F  S  F  T  P  F  I  F  S  L  S  V  N  C  K  K  *  G  N  L  N  Y  G  G  T  C  F  F  *  L  V  W  I  V  A  N  F  L  V  S  C  V  H  T  I  N  S  T  K  L  Q  I  Y  E  S  F  I  S  V  V  F  G </second_frame>
            <third_frame>   L  L  I  F  L  L  D  V  S  S  T  N  P  S  I  K  T  S  L  I  L  L  L  I  H  L  S  I  C  F  D  R  C  *  K  L  V  E  E  F  K  R  S  I  L  Y  *  *  W  S  L  W  V  L  F  Y  L  H  C  L  *  R  T  L  M  P  V  G  V  E  K  P  A  A  S  G  K  G  R  S  F  V  K  T  C  A  A  K  A  K  A  E  E  L  K  R  K  W  G  I  R  A  V  G  *  V  L  I  T  K  E  L  S  K  M  M  M  V  K  T  L  L  S  L  K  R :   *  K  *  E  C  R  Q  F  I  R  L  K  G  S  *  V  K  V  G  L  V  R  S  F  W  V  V  V  F  L  V  E  M  N  L  Q  M  V  K  G  L  L  R :   L  H  *  N  L  S  I  *  K  A  K  A  V  T  M  V  L  H  M  S  G  K  F  T   : I  L  L  E  A  A  M  E  C  L  A  C  I  I  K  G  G  *  E  T  I  T  *  W :   L  W  T  C  *  G  L  A  Y  G  M  Y  G  I  P  L  G  R   : R  C  L  Q  K  W  *  H  V  L  Q  L  S  L  C  Q  F  *  A  *  C  M  H  K   : V  M  C  M  E  M  *  S  Q  R  T  F  C  L  V  S  H  Q  L  C  R  R  R  S  C  S  L  S  T  W  D  *  :  Q  Q  S  G  E  R  M  *  K  V  R  M  W  Y  M  I  S  D  L  T  C  L   : E  G  L  F  G  M  Q  V  L  M  H  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  S  F  F  F  T  E  A  G  C  H  G  K  D  F  R :   E  I  T  N  R  F  W  S  A  K  R  R  W  Q  H  L  Q  K  C  F  A  V  S  V  H  H  L  *  E  N  F  L  I  *  *  *  T  *  N  L  M  K  N  L  I  I  R  S  *  S  P  Y  L  G  A  C  L  D  L  I  L  L  *  G  Q  S  T  L  M  V  P  K  R :   F  F  K  L  A  K  S  G  G  D  *  M  *  R  R  G  K  S  S  L  E  R  R  F  A  S  E  F  L  H  H  S  G  F  R  F  T  M  L  G  S  P  *  N  R   : G  T  I  I  M  *  Q  I  Q  D  *  Q  S  M  W  R  K  G  L  K  M  D  Y  T  *  V  V  W  H  L  V  P  T  S  G  L  L  S  W  M  L  E  P  I  S  L  A  K  F  M  S  Y  H  N  H  S  C  T  R :   S  G  L  W  N  S  G  R  R  T  I  I  L  V  L  L  L  V  L  P  M  E  A  L  L  L  *  C  Q  K  :  A  H  S  S  V  S  S  L  I  K  *  V  S  H  S  H  S  S  G  *  A  R  S  G  K  K  G  S  M  *  P  P  W  Q  L  L  E  V  G  G  R  L  L  C  L  V  I  Q  V  S  V  T  R :   *  W  S  L  I  F  F  I  Q  V  K  A  F  I  N  D  G  T  M  V  I  V  L  Q  Q  Q  L  L  H  *  I  K  L  L  L  S  *  V  C  L  D  E  G  L  A  M  R  L  R  R  H  *  E  H  L  S  F  Q  A  H  M  L  R :   K  N  G  Q  K  I  S  I  F  P  V  S  A  M  D  E  L  Y  L  E  R  M  E  N  L  M  L  D  I  F  P  S  P  L  L  F  S  H  C  Q  S  I  V  K  S  E  E  I  L  I  M  V  A  L  A  S  F  S  L  F  G  *  W  Q  T  F  S  S  L  V  Y  I  Q  L  T  A  Q  N  Y  K  S  M  N  L  L  Y  L  L  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26952" stop="27065"/>
                    <exon start="28092" stop="28220"/>
                    <exon start="28331" stop="28404"/>
                    <exon start="28490" stop="28559"/>
                    <exon start="30422" stop="30477"/>
                    <exon start="30633" stop="30704"/>
                    <exon start="30852" stop="30946"/>
                    <exon start="31030" stop="31096"/>
                    <exon start="31183" stop="31312"/>
                    <exon start="31422" stop="31640"/>
                    <exon start="31729" stop="31865"/>
                    <exon start="33757" stop="33931"/>
                    <exon start="34200" stop="34290"/>
                    <exon start="34495" stop="34652"/>
                    <exon start="35518" stop="35706"/>
                    <exon start="35966" stop="36025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1833</number_coding_nucleotides>
                  <number_encoded_amino_acids>611</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKSRRVEEEMGDQSGGLSANNKGTEQDDDGKNSPIPKKVKVGMSPVYQVERKLGKGGFGQVFLGRRLSGGNESSNGQGAVEVALKFEHMKSKGCNYGPPHEWQVYNTLGGSHGVPSVHYKGRVGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVACIAVESLSILSIMHAQGYVHGDVKPENFLLGQPSTLQEKKLFLVDLGLATKWRENVKGPHVVYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDNKSFLVCKKKMATSPEMLCCFCPSPLREFLDIVINMKFDEEPNYSKLISLFGSLLGPDPAIRPINTDGAQKILQVGQKRGRLNVEEGEEQPRKKVRIGVPASQWISIYNARKPMKQRYHYNVTDTRLAEHVEKGTEDGLYISCVASCSDFWAIIMDAGTNFTSQVYELSQSFLHKEWVMEQWEKNYYISSLAGATNGSSLVVMSKGTQFSQQSYKVSESFPFKWISKKWKEGFNVTSMATAGSRWAVVMSRNSGVSNQVVELDFLYPSEGIHKRWDNGYRITATAATLDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWAKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58930" PGL_stop="49184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57253" e_stop="57183"/>
            <exon e_start="56831" e_stop="56776"/>
            <exon e_start="55119" e_stop="54990"/>
            <exon e_start="54730" e_stop="54619"/>
            <exon e_start="52354" e_stop="52255"/>
            <exon e_start="49956" e_stop="49878"/>
            <exon e_start="49781" e_stop="49610"/>
            <exon e_start="49501" e_stop="49421"/>
            <exon e_start="49291" e_stop="49184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="0.921" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.468" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.305" e_score="1.000"/>
          <exon-only e_score="0.852"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="57253" e_stop="57183" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="0.921">
            <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56831" e_stop="56776" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55119" e_stop="54990" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54730" e_stop="54619" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52354" e_stop="52255" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52254" i_stop="49957" i_length="2298"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49956" e_stop="49878" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.468">
            <gDNA_intron_boundary i_start="49877" i_stop="49782" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49781" e_stop="49610" e_length="172"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49609" i_stop="49502" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49501" e_stop="49421" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.305">
            <gDNA_intron_boundary i_start="49420" i_stop="49292" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="0.852">
            <gDNA_exon_boundary e_start="49291" e_stop="49184" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57253" stop="57183"/>
              <exon start="56831" stop="56776"/>
              <exon start="55119" stop="54990"/>
              <exon start="54730" stop="54619"/>
              <exon start="52354" stop="52255"/>
              <exon start="49956" stop="49912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54716" stop="54619"/>
              <exon start="52354" stop="52255"/>
              <exon start="49956" stop="49878"/>
              <exon start="49781" stop="49610"/>
              <exon start="49501" stop="49424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52309" stop="52255"/>
              <exon start="49956" stop="49878"/>
              <exon start="49781" stop="49610"/>
              <exon start="49501" stop="49421"/>
              <exon start="49291" stop="49184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAG : GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG : ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA : ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG : CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG : ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG : TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG : GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCA : GTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTAAGATGTAGGCGAAAGCTGGGCGTTAAACCTAACAAACCAAAACTCCCTGCTTCAGATACCGC</gDNA_template>
            <first_frame> V  K  V  E  I  *  L  G  *  A  I  T  G  *  M  V  I  S  S  D  Q  L  F  R :   L  *  S  I  S  V  I  S  S  A  S  Q  G  D  A  C  Y  E   : D  C  Y  S  W  W  D  W  A  R  I  Q  Q  T  N  K  G  D  W  *  S  C  *  L  *  T  S  R  L  V  K  *  M  A  V  N  A  L  Y  L  Y  *  A  Q :   Y  I  P  H  *  E  G  K  A  T  S  G  R  *  W  Y  I  L  F  L  Q  L  N  G  R  N  F  C  C  V  W  Q  G  L  S  L  W  :  H  N  V  V  *  L  L  L  G  L  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  I  S  E   : D  *  K  M  W  L  W  N  C  G  R  *  R  Y  Q  T  R  R  L  C  Y  R  V  C  W  R  S :   Y  *  *  Q  N  M  *  R  E  A  L  E  N  E  A  *  W  R  N  K  L  L  L  V  *  N  Q  S  G  Y  G  D  *  C  H  L  Q  G  Q  Q  I  P  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  N  K  N  W  H  I  C  N  T  R  H  *  K  G  R  A  S  D  L  *  L  P  :  V  C  S  V  W  C  R  S  R  L  P  L  W  C  C  K  M  *  A  K  A  G  R  *  T  *  Q  T  K  T  P  C  F  R  Y  R </first_frame>
            <second_frame>  S  R  L  K  F  N  W  D  E  Q  *  Q  A  K  W  S  L  A  Q  I  S  F  S   : G  Y  S  Q  S  V  L  Y  P  V  P  V  K  V  M  P  A  M  K  :  T  A  I  H  G  G  I  G  H  V  F  S  K  L  I  K  E  I  G  D  P  V  D  F  E  L  P  D  W  L  N  K  W  Q  S  M  P  Y  T  F  I  K  R   : N  I  Y  L  T  K  K  V  K  R  R  L  E  D  D  G  I  F  C  S  C  S  S  T  A  E  T  S  V  V  C  G  K  D  C  L  C  G :   I  M  L  S  S  C  S  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  L  V  K  :  T  E  K  C  G  S  G  I  V  A  D  E  D  I  K  R  G  D  F  V  I  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  M  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  K  W :   M  I  D  G  E  T  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  V  R  C  R  R  K  L  G  V  K  P  N  K  P  K  L  P  A  S  D  T   </second_frame>
            <third_frame>   Q  G  *  N  L  T  G  M  S  N  N  R  L  N  G  H  *  L  R  S  A  F  Q  :  V  I  V  N  Q  C  Y  I  Q  C  Q  S  R  *  C  L  L  *  R :   L  L  F  M  V  G  L  G  T  Y  S  A  N  *  *  R  R  L  V  I  L  L  T  L  N  F  Q  I  G  *  I  N  G  S  Q  C  P  I  P  L  L  S  A  :  I  Y  T  S  L  R  R  *  S  D  V  W  K  M  M  V  Y  F  V  P  A  A  Q  R  Q  K  L  L  L  C  V  A  R  I  V  S  V   : A  *  C  C  L  A  A  P  R  V  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  N  *  *  R :   L  K  N  V  A  L  E  L  W  Q  M  K  I  S  N  E  E  T  L  L  *  S  M  L  E  K  :  L  L  M  T  K  H  V  K  R  G  F  G  K  *  S  I  V  E  K  Q  T  S  T  C  V  K  S  I  G  I  W  *  L  M  P  L  T  R  A  T  N  P  D  T  L  I  I  V  V  V  Q  I  L  R  C  R  N   : G  *  L  M  V  K  Q  E  L  A  Y  L  Q  H  E  T  L  K  G  A  S  I  *  P  M  I  T   : S  L  F  S  L  V  Q  I  K  I  A  T  V  V  L  *  D  V  G  E  S  W  A  L  N  L  T  N  Q  N  S  L  L  Q  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57219" stop="57183"/>
                    <exon start="56831" stop="56776"/>
                    <exon start="55119" stop="54990"/>
                    <exon start="54730" stop="54619"/>
                    <exon start="52354" stop="52255"/>
                    <exon start="49956" stop="49878"/>
                    <exon start="49781" stop="49610"/>
                    <exon start="49501" stop="49421"/>
                    <exon start="49291" stop="49186"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAKWSLAQISFSGYSQSVLYPVPVKVMPAMKTAIHGGIGHVFSKLIKEIGDPVDFELPDWLNKWQSMPYTFIKRNIYLTKKVKRRLEDDGIFCSCSSTAETSVVCGKDCLCGIMLSSCSSGCKCGSSCLNKPFHQRPVKKMKLVKTEKCGSGIVADEDIKRGDFVIEYVGEVIDDKTCEERLWKMKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWMIDGETRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAVRCRRKLGVKPNKPKLPASDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52280" e_stop="52255"/>
            <exon e_start="51150" e_stop="50843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52280" e_stop="52255" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52254" i_stop="51151" i_length="1104"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="51150" e_stop="50843" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52280" stop="52255"/>
              <exon start="51150" stop="50843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGAAGAAGATGAAATTAGTGAAG : GAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTG</gDNA_template>
            <first_frame> L  *  R  R  *  N  *  *  R :   K  V  T  E  A  L  M  S  W  E  E  E  G  V  P  A  K  D  R  S  R  W  R  I  I  P  S  A  I  W  W  V  I  W  K  E  R  N  S  T  C  V  E  S  I  L  N  N  V  Q  K  V  K  L  N  Y  Y  F  F  S  F  L  V  *  S  V  I  L  K  *  N  Y  F  L  L  L  M  F  *  T  Q  F  D  H  R  A  E  K  I  G  V  H  L  Y  L  R  F  Q  Y  N  P  F  </first_frame>
            <second_frame>  C  E  E  D  E  I  S  E   : G  K  *  L  R  P  *  *  A  G  R  K  R  G  S  L  Q  K  T  E  V  D  G  E  L  S  L  V  L  Y  G  G  L  S  G  K  R  G  I  Q  H  V  L  R  A  Y  *  T  M  C  R  K  L  N  L  T  T  T  F  L  V  F  W  C  N  Q  L  Y  S  N  E  T  I  S  Y  Y  *  C  S  R  L  N  L  I  I  E  Q  R  K  L  E  Y  T  C  I  *  G  F  N  T  T  H  L </second_frame>
            <third_frame>   V  K  K  M  K  L  V  K  :  E  S  D  *  G  L  N  E  L  G  G  R  G  G  P  C  K  R  Q  K  *  M  E  N  Y  P  *  C  Y  M  V  G  Y  L  E  R  E  E  F  N  M  C  *  E  H  T  E  Q  C  A  E  S  *  T  *  L  L  L  F  *  F  F  G  V  I  S  Y  T  Q  M  K  L  F  L  I  I  D  V  L  D  S  I  *  S  *  S  R  E  N  W  S  T  L  V  F  K  V  S  I  Q  P  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52256" stop="52255"/>
                    <exon start="51150" stop="50958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKVTEALMSWEEEGVPAKDRSRWRIIPSAIWWVIWKERNSTCVESILNNVQKVKLNYYFFSFLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56831" e_stop="56776"/>
            <exon e_start="55119" e_stop="54990"/>
            <exon e_start="54730" e_stop="54613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="0.893"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="0.985"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="56831" e_stop="56776" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="55119" e_stop="54990" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.907">
            <gDNA_exon_boundary e_start="54730" e_stop="54613" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56831" stop="56776"/>
              <exon start="55119" stop="54990"/>
              <exon start="54730" stop="54613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG : ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA : ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGG</gDNA_template>
            <first_frame> V  I  V  N  Q  C  Y  I  Q  C  Q  S  R  *  C  L  L  *  R :   L  L  F  M  V  G  L  G  T  Y  S  A  N  *  *  R  R  L  V  I  L  L  T  L  N  F  Q  I  G  *  I  N  G  S  Q  C  P  I  P  L  L  S  A  :  I  Y  T  S  L  R  R  *  S  D  V  W  K  M  M  V  Y  F  V  P  A  A  Q  R  Q  K  L  L  L  C  V  A  R  I  V  S  V  G  E  </first_frame>
            <second_frame>  L  *  S  I  S  V  I  S  S  A  S  Q  G  D  A  C  Y  E   : D  C  Y  S  W  W  D  W  A  R  I  Q  Q  T  N  K  G  D  W  *  S  C  *  L  *  T  S  R  L  V  K  *  M  A  V  N  A  L  Y  L  Y  *  A  Q :   Y  I  P  H  *  E  G  K  A  T  S  G  R  *  W  Y  I  L  F  L  Q  L  N  G  R  N  F  C  C  V  W  Q  G  L  S  L  W  V  R </second_frame>
            <third_frame>   Y  S  Q  S  V  L  Y  P  V  P  V  K  V  M  P  A  M  K  :  T  A  I  H  G  G  I  G  H  V  F  S  K  L  I  K  E  I  G  D  P  V  D  F  E  L  P  D  W  L  N  K  W  Q  S  M  P  Y  T  F  I  K  R   : N  I  Y  L  T  K  K  V  K  R  R  L  E  D  D  G  I  F  C  S  C  S  S  T  A  E  T  S  V  V  C  G  K  D  C  L  C  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56829" stop="56776"/>
                    <exon start="55119" stop="54990"/>
                    <exon start="54730" stop="54615"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSQSVLYPVPVKVMPAMKTAIHGGIGHVFSKLIKEIGDPVDFELPDWLNKWQSMPYTFIKRNIYLTKKVKRRLEDDGIFCSCSSTAETSVVCGKDCLCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="58930" e_stop="58887"/>
            <exon e_start="57253" e_stop="57183"/>
            <exon e_start="56831" e_stop="56776"/>
            <exon e_start="55119" e_stop="54990"/>
            <exon e_start="54730" e_stop="54619"/>
            <exon e_start="52354" e_stop="52095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.977"/>
          <exon-intron don_prob="0.864" acc_prob="0.921" e_score="0.972"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="0.964"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="0.982"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="58930" e_stop="58887" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="58886" i_stop="57254" i_length="1633"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="57253" e_stop="57183" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.921">
            <gDNA_intron_boundary i_start="57182" i_stop="56832" i_length="351"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="56831" e_stop="56776" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="56775" i_stop="55120" i_length="1656"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="55119" e_stop="54990" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="54989" i_stop="54731" i_length="259"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="54730" e_stop="54619" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="54618" i_stop="52355" i_length="2264"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="52354" e_stop="52095" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58930" stop="58887"/>
              <exon start="57253" stop="57183"/>
              <exon start="56831" stop="56776"/>
              <exon start="55119" stop="54990"/>
              <exon start="54730" stop="54619"/>
              <exon start="52354" stop="52095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCTCCTCCGACGAGCGTCGCCGCCGCAGACTTTCCCGCCG : GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAG : GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG : ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA : ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG : CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCA</gDNA_template>
            <first_frame> Q  L  S  S  D  E  R  R  R  R  R  L  S  R  R :   S  R  L  K  F  N  W  D  E  Q  *  Q  A  K  W  S  L  A  Q  I  S  F  S   : G  Y  S  Q  S  V  L  Y  P  V  P  V  K  V  M  P  A  M  K  :  T  A  I  H  G  G  I  G  H  V  F  S  K  L  I  K  E  I  G  D  P  V  D  F  E  L  P  D  W  L  N  K  W  Q  S  M  P  Y  T  F  I  K  R   : N  I  Y  L  T  K  K  V  K  R  R  L  E  D  D  G  I  F  C  S  C  S  S  T  A  E  T  S  V  V  C  G  K  D  C  L  C  G :   I  M  L  S  S  C  S  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  L  V  K  V  D  T  *  R  T  S  S  C  F  R  *  L  N  K  Y  P  L  M  D  A  F  *  L  L  D  C  F  *  L  L  L  I  E  M  T  V  C  D  A  L  W  *  L  L  *  F  *  I  V  L  F  C  </first_frame>
            <second_frame>  N  S  P  P  T  S  V  A  A  A  D  F  P  A   : G  Q  G  *  N  L  T  G  M  S  N  N  R  L  N  G  H  *  L  R  S  A  F  Q  :  V  I  V  N  Q  C  Y  I  Q  C  Q  S  R  *  C  L  L  *  R :   L  L  F  M  V  G  L  G  T  Y  S  A  N  *  *  R  R  L  V  I  L  L  T  L  N  F  Q  I  G  *  I  N  G  S  Q  C  P  I  P  L  L  S  A  :  I  Y  T  S  L  R  R  *  S  D  V  W  K  M  M  V  Y  F  V  P  A  A  Q  R  Q  K  L  L  L  C  V  A  R  I  V  S  V   : A  *  C  C  L  A  A  P  R  V  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  N  *  *  R  *  T  L  K  E  L  R  A  A  S  D  S  *  T  N  I  P  *  W  M  H  F  N  Y  L  I  V  F  N  Y  F  S  L  R  *  L  F  V  M  P  C  G  D  F  C  N  S  E  L  F  Y  F  A </second_frame>
            <third_frame>   T  L  L  R  R  A  S  P  P  Q  T  F  P  P  :  V  K  V  E  I  *  L  G  *  A  I  T  G  *  M  V  I  S  S  D  Q  L  F  R :   L  *  S  I  S  V  I  S  S  A  S  Q  G  D  A  C  Y  E   : D  C  Y  S  W  W  D  W  A  R  I  Q  Q  T  N  K  G  D  W  *  S  C  *  L  *  T  S  R  L  V  K  *  M  A  V  N  A  L  Y  L  Y  *  A  Q :   Y  I  P  H  *  E  G  K  A  T  S  G  R  *  W  Y  I  L  F  L  Q  L  N  G  R  N  F  C  C  V  W  Q  G  L  S  L  W  :  H  N  V  V  *  L  L  L  G  L  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  I  S  E  G  R  H  L  K  N  F  E  L  L  Q  I  V  E  Q  I  S  P  D  G  C  I  L  T  T  *  L  F  L  T  T  S  H  *  D  D  C  L  *  C  L  V  V  T  F  V  I  L  N  C  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57219" stop="57183"/>
                    <exon start="56831" stop="56776"/>
                    <exon start="55119" stop="54990"/>
                    <exon start="54730" stop="54619"/>
                    <exon start="52354" stop="52243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAKWSLAQISFSGYSQSVLYPVPVKVMPAMKTAIHGGIGHVFSKLIKEIGDPVDFELPDWLNKWQSMPYTFIKRNIYLTKKVKRRLEDDGIFCSCSSTAETSVVCGKDCLCGIMLSSCSSGCKCGSSCLNKPFHQRPVKKMKLVKVDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60533" PGL_stop="59784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60533" e_stop="59784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="60533" e_stop="59784" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60533" stop="59784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</gDNA_template>
            <first_frame> E  I  I  V  C  N  Y  I  S  *  V  H  V  A  *  Q  R  *  T  T  F  I  I  M  L  Q  S  P  Y  N  *  N  C  N  Y  V  T  S  I  Q  Q  F  Q  H  L  T  *  L  N  S  L  N  Y  I  S  I  R  V  I  F  *  K  I  N  L  S  N  F  R  S  *  G  R  S  P  K  P  N  I  F  L  C  S  L  N  S  V  I  *  *  Y  G  T  V  D  S  K  W  T  P  L  F  F  E  L  F  K  L  P  F  I  I  F  V  H  N  N  N  N  I  F  G  *  I  I  S  R  V  Y  E  E  *  C  V  H  K  S  K  S  F  Q  *  I  F  I  L  M  I  A  D  I  W  S  D  K  *  Y  T  K  Y  L  N  I  *  K  *  F  F  *  N  H  P  F  S  C  T  S  L  K  G  D  Q  Y  V  I  *  N  K  F  Y  V  P  S  H  F  V  K  K  N  V  F  *  V  H  V  L  L  K  I  M  N  Y  L  V  V  L  Q  R  N  *  T  Q  S  D  L  I  S  I  G  K  T  N  F  D  *  S  N  M  L  C  V  T  N  T  T  S  Y  F  F  F </first_frame>
            <second_frame>  R  *  L  C  V  I  I  Y  H  R  C  M  L  P  S  K  G  K  R  L  S  *  L  C  Y  N  L  H  I  I  R  I  V  I  M  *  Q  V  Y  N  N  F  N  I  S  L  N  *  T  P  L  I  I  L  V  *  G  L  Y  S  R  K  S  I  *  V  I  L  E  V  K  E  G  A  L  N  L  I  F  S  F  V  V  *  I  V  *  Y  N  N  M  V  P  *  I  Q  S  G  L  L  Y  F  L  S  Y  L  S  Y  L  L  *  S  S  S  I  T  I  I  T  Y  L  V  R  L  *  V  G  S  M  K  S  S  A  Y  I  N  L  R  V  S  N  R  S  L  F  *  *  L  L  I  Y  G  V  I  N  N  T  P  N  I  *  I  Y  K  N  N  F  F  K  I  T  L  F  L  A  L  A  *  K  E  I  N  M  *  F  K  T  N  F  T  Y  L  V  I  S  L  K  K  M  Y  F  K  Y  M  C  C  *  K  *  *  T  T  *  L  F  Y  K  E  I  E  L  K  V  I  *  Y  Q  *  E  K  Q  T  L  I  S  Q  I  C  Y  A  *  L  I  L  L  P  I  F  F   </second_frame>
            <third_frame>   D  N  C  V  *  L  Y  I  I  G  A  C  C  L  A  K  V  N  D  F  H  N  Y  V  T  I  S  I  *  L  E  L  *  L  C  D  K  Y  T  T  I  S  T  S  H  L  I  K  L  P  *  L  Y  *  Y  K  G  Y  I  L  E  N  Q  F  K  *  F  *  K  L  R  K  E  P  *  T  *  Y  F  P  L  *  S  K  *  C  N  I  I  I  W  Y  R  R  F  K  V  D  S  F  I  F  *  V  I  *  V  T  F  Y  N  L  R  P  *  Q  *  *  H  I  W  L  D  Y  K  *  G  L  *  R  V  V  R  T  *  I  *  E  F  P  I  D  L  Y  F  N  D  C  *  Y  M  E  *  *  I  I  H  Q  I  F  E  Y  I  K  I  I  F  L  K  S  P  F  F  L  H  *  L  K  R  R  S  I  C  N  L  K  Q  I  L  R  T  *  S  F  R  *  K  K  C  I  L  S  T  C  V  V  K  N  N  E  L  L  S  C  F  T  K  K  L  N  S  K  *  F  D  I  N  R  K  N  K  L  *  L  V  K  Y  V  M  R  N  *  Y  Y  F  L  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="68194" PGL_stop="65289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68194" e_stop="68141"/>
            <exon e_start="67972" e_stop="67761"/>
            <exon e_start="67675" e_stop="67443"/>
            <exon e_start="67372" e_stop="67153"/>
            <exon e_start="67070" e_stop="66689"/>
            <exon e_start="66615" e_stop="66508"/>
            <exon e_start="66368" e_stop="66165"/>
            <exon e_start="66070" e_stop="65969"/>
            <exon e_start="65882" e_stop="65709"/>
            <exon e_start="65624" e_stop="65289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68194" e_stop="68141" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.680">
            <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67972" e_stop="67761" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.561">
            <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67675" e_stop="67443" e_length="233"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67372" e_stop="67153" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.890">
            <gDNA_intron_boundary i_start="67152" i_stop="67071" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="66689" e_length="382"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66508" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66368" e_stop="66165" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66070" e_stop="65969" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65882" e_stop="65709" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="65624" e_stop="65289" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68194" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68194" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68193" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67153"/>
              <exon start="67070" stop="67045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68192" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67153"/>
              <exon start="67070" stop="67053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68192" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68190" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68188" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67847" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67153"/>
              <exon start="67070" stop="67005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67310" stop="67153"/>
              <exon start="67070" stop="66689"/>
              <exon start="66615" stop="66603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67229" stop="67153"/>
              <exon start="67070" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67207" stop="67153"/>
              <exon start="67070" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66987" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66779" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66306" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66268" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66255" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65801" stop="65709"/>
              <exon start="65624" stop="65360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG : TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG : GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG : CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC : GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> S  K  P  G  I  L  S  E  W  P  W  A  N  L  G  N  F  K  :  Y  L  V  L  A  P  F  V  G  H  S  I  Y  S  F  L  R  D  G  D  I  G  Y  I  A  I  L  P  F  L  L  F  R  F  I  H  N  Q  I  W  I  S  L  S  R  H  R  T  A  K  G  N  N  R  I  V  D  R  S  I  E  F  D  Q  V  D  R  E  N  N  W :   D  D  Q  I  I  F  N  G  L  L  Y  Y  V  G  Y  L  R  M  E  Q  V  H  H  L  P  L  W  R  S  G  G  F  I  V  T  A  L  A  H  I  G  P  V  E  F  I  Y  Y  W  F  H  R  A  L  H  H  H  F  L  Y  S  R  Y  H  S  H  H  H  S  S  I  V  T  Q  P  I  S   : A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S :   Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </first_frame>
            <second_frame>  L  N  L  E  F  S  Q  N  G  H  G  Q  T  L  A  T  L  S :   T  W  C  W  H  H  L  L  V  I  A  Y  T  H  S  *  G  M  E  I  L  D  T  *  P  Y  F  H  F  Y  S  S  D  L  F  T  T  R  Y  G  Y  R  Y  R  A  T  G  L  L  R  V  I  I  E  L  L  I  E  A  L  S  L  I  K  L  I  E  K  T  T   : G  M  I  K  L  Y  L  T  G  Y  Y  T  M  L  D  T  *  E  W  N  K  F  I  T  C  L  Y  G  E  V  V  D  S  L  *  L  H  W  P  I  L  V  L  L  S  L  S  I  I  G  F  I  E  L  C  I  T  I  F  S  I  R  V  I  I  L  I  I  T  P  L  L  L  L  N  L  S  V  :  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P   : R  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </second_frame>
            <third_frame>   *  T  W  N  S  L  R  M  A  M  G  K  P  W  Q  L  *   : V  L  G  V  G  T  I  C  W  S  *  H  I  L  I  L  E  G  W  R  Y  W  I  H  S  H  T  S  I  S  T  L  Q  I  Y  S  Q  P  D  M  D  I  V  I  A  P  Q  D  C  *  G  *  *  *  N  C  *  *  K  H  *  V  *  S  S  *  *  R  K  Q  L  :  G  *  S  N  Y  I  *  R  A  I  I  L  C  W  I  P  E  N  G  T  S  S  S  L  A  S  M  E  K  W  W  I  H  C  N  C  I  G  P  Y  W  S  C  *  V  Y  L  L  L  V  S  *  S  S  A  S  P  F  S  L  F  A  L  S  F  S  S  S  L  L  Y  C  Y  S  T  Y  Q  C :   I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  :  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68194" stop="68141"/>
                    <exon start="67972" stop="67761"/>
                    <exon start="67675" stop="67443"/>
                    <exon start="67372" stop="67153"/>
                    <exon start="67070" stop="66689"/>
                    <exon start="66615" stop="66508"/>
                    <exon start="66368" stop="66165"/>
                    <exon start="66070" stop="65969"/>
                    <exon start="65882" stop="65709"/>
                    <exon start="65624" stop="65457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPGILSEWPWANLGNFKYLVLAPFVGHSIYSFLRDGDIGYIAILPFLLFRFIHNQIWISLSRHRTAKGNNRIVDRSIEFDQVDRENNWDDQIIFNGLLYYVGYLRMEQVHHLPLWRSGGFIVTALAHIGPVEFIYYWFHRALHHHFLYSRYHSHHHSSIVTQPISAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSSYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68194" e_stop="68141"/>
            <exon e_start="67972" e_stop="67761"/>
            <exon e_start="67675" e_stop="67443"/>
            <exon e_start="67372" e_stop="66689"/>
            <exon e_start="66615" e_stop="66508"/>
            <exon e_start="66368" e_stop="66165"/>
            <exon e_start="66070" e_stop="65969"/>
            <exon e_start="65882" e_stop="65709"/>
            <exon e_start="65624" e_stop="65289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68194" e_stop="68141" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.680">
            <gDNA_intron_boundary i_start="68140" i_stop="67973" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67972" e_stop="67761" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.561">
            <gDNA_intron_boundary i_start="67760" i_stop="67676" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67675" e_stop="67443" e_length="233"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="67442" i_stop="67373" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67372" e_stop="66689" e_length="684"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66508" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66368" e_stop="66165" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66070" e_stop="65969" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65882" e_stop="65709" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="65624" e_stop="65289" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68194" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68194" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68192" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68190" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68188" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67443"/>
              <exon start="67372" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68186" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68141"/>
              <exon start="67972" stop="67761"/>
              <exon start="67675" stop="67482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67212" stop="66760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66987" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66779" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66306" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66268" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66255" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65801" stop="65709"/>
              <exon start="65624" stop="65360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG : TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG : GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG : CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> S  K  P  G  I  L  S  E  W  P  W  A  N  L  G  N  F  K  :  Y  L  V  L  A  P  F  V  G  H  S  I  Y  S  F  L  R  D  G  D  I  G  Y  I  A  I  L  P  F  L  L  F  R  F  I  H  N  Q  I  W  I  S  L  S  R  H  R  T  A  K  G  N  N  R  I  V  D  R  S  I  E  F  D  Q  V  D  R  E  N  N  W :   D  D  Q  I  I  F  N  G  L  L  Y  Y  V  G  Y  L  R  M  E  Q  V  H  H  L  P  L  W  R  S  G  G  F  I  V  T  A  L  A  H  I  G  P  V  E  F  I  Y  Y  W  F  H  R  A  L  H  H  H  F  L  Y  S  R  Y  H  S  H  H  H  S  S  I  V  T  Q  P  I  S   : A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S  *  V  I  F  L  P  L  P  T  H  I  L  S  D  E  F  L  H  Y  H  N  L  S  M  S  L  Q  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </first_frame>
            <second_frame>  L  N  L  E  F  S  Q  N  G  H  G  Q  T  L  A  T  L  S :   T  W  C  W  H  H  L  L  V  I  A  Y  T  H  S  *  G  M  E  I  L  D  T  *  P  Y  F  H  F  Y  S  S  D  L  F  T  T  R  Y  G  Y  R  Y  R  A  T  G  L  L  R  V  I  I  E  L  L  I  E  A  L  S  L  I  K  L  I  E  K  T  T   : G  M  I  K  L  Y  L  T  G  Y  Y  T  M  L  D  T  *  E  W  N  K  F  I  T  C  L  Y  G  E  V  V  D  S  L  *  L  H  W  P  I  L  V  L  L  S  L  S  I  I  G  F  I  E  L  C  I  T  I  F  S  I  R  V  I  I  L  I  I  T  P  L  L  L  L  N  L  S  V  :  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P  R  E  *  S  S  Y  L  S  L  H  I  Y  S  L  T  N  F  Y  T  I  T  T  C  R  C  H  C  R  Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </second_frame>
            <third_frame>   *  T  W  N  S  L  R  M  A  M  G  K  P  W  Q  L  *   : V  L  G  V  G  T  I  C  W  S  *  H  I  L  I  L  E  G  W  R  Y  W  I  H  S  H  T  S  I  S  T  L  Q  I  Y  S  Q  P  D  M  D  I  V  I  A  P  Q  D  C  *  G  *  *  *  N  C  *  *  K  H  *  V  *  S  S  *  *  R  K  Q  L  :  G  *  S  N  Y  I  *  R  A  I  I  L  C  W  I  P  E  N  G  T  S  S  S  L  A  S  M  E  K  W  W  I  H  C  N  C  I  G  P  Y  W  S  C  *  V  Y  L  L  L  V  S  *  S  S  A  S  P  F  S  L  F  A  L  S  F  S  S  S  L  L  Y  C  Y  S  T  Y  Q  C :   I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  V  S  N  L  L  T  S  P  Y  T  Y  T  L  *  R  I  F  T  L  S  Q  P  V  D  V  T  A  G  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67144" stop="66689"/>
                    <exon start="66615" stop="66508"/>
                    <exon start="66368" stop="66165"/>
                    <exon start="66070" stop="65969"/>
                    <exon start="65882" stop="65709"/>
                    <exon start="65624" stop="65457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYLSLHIYSLTNFYTITTCRCHCRYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68194" stop="68141"/>
                    <exon start="67972" stop="67761"/>
                    <exon start="67675" stop="67443"/>
                    <exon start="67372" stop="67149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPGILSEWPWANLGNFKYLVLAPFVGHSIYSFLRDGDIGYIAILPFLLFRFIHNQIWISLSRHRTAKGNNRIVDRSIEFDQVDRENNWDDQIIFNGLLYYVGYLRMEQVHHLPLWRSGGFIVTALAHIGPVEFIYYWFHRALHHHFLYSRYHSHHHSSIVTQPISAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="67387" e_stop="66689"/>
            <exon e_start="66615" e_stop="66508"/>
            <exon e_start="66368" e_stop="66165"/>
            <exon e_start="66070" e_stop="65969"/>
            <exon e_start="65882" e_stop="65709"/>
            <exon e_start="65624" e_stop="65289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67387" e_stop="66689" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="66688" i_stop="66616" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66508" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66368" e_stop="66165" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66164" i_stop="66071" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66070" e_stop="65969" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65968" i_stop="65883" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65882" e_stop="65709" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65708" i_stop="65625" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="65624" e_stop="65289" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67387" stop="66910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67387" stop="66916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67212" stop="66760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66987" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66779" stop="66689"/>
              <exon start="66615" stop="66508"/>
              <exon start="66368" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66306" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66268" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66255" stop="66165"/>
              <exon start="66070" stop="65969"/>
              <exon start="65882" stop="65709"/>
              <exon start="65624" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65801" stop="65709"/>
              <exon start="65624" stop="65360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> D  V  F  *  Q  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P  R  E  *  S  S  Y  L  S  L  H  I  Y  S  L  T  N  F  Y  T  I  T  T  C  R  C  H  C  R  Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </first_frame>
            <second_frame>  M  Y  F  D  S  I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  V  S  N  L  L  T  S  P  Y  T  Y  T  L  *  R  I  F  T  L  S  Q  P  V  D  V  T  A  G  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </second_frame>
            <third_frame>   C  I  L  T  A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S  *  V  I  F  L  P  L  P  T  H  I  L  S  D  E  F  L  H  Y  H  N  L  S  M  S  L  Q  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67144" stop="66689"/>
                    <exon start="66615" stop="66508"/>
                    <exon start="66368" stop="66165"/>
                    <exon start="66070" stop="65969"/>
                    <exon start="65882" stop="65709"/>
                    <exon start="65624" stop="65457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYLSLHIYSLTNFYTITTCRCHCRYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67385" stop="67149"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILTAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66639" e_stop="66508"/>
            <exon e_start="66368" e_stop="66308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.939"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="66639" e_stop="66508" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66507" i_stop="66369" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="66368" e_stop="66308" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66639" stop="66508"/>
              <exon start="66368" stop="66308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTA</gDNA_template>
            <first_frame> S  *  L  F  F  F  *  Q  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  </first_frame>
            <second_frame>  H  D  Y  F  F  F  N  S  T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L </second_frame>
            <third_frame>   M  I  I  F  F  L  T  V  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="73693" PGL_stop="71951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73680" e_stop="73651"/>
            <exon e_start="73298" e_stop="71951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73680" e_stop="73651" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73650" i_stop="73299" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73298" e_stop="71951" e_length="1348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73680" stop="73651"/>
              <exon start="73298" stop="72443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73679" stop="73651"/>
              <exon start="73298" stop="72759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73678" stop="73651"/>
              <exon start="73298" stop="72437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73677" stop="73651"/>
              <exon start="73298" stop="72960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73674" stop="73651"/>
              <exon start="73298" stop="72822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73176" stop="72702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73176" stop="72744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73061" stop="72453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73001" stop="72520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72765" stop="71951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCATCTCTCTTTAACTTATACAAAAGA : ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> I  S  S  L  F  N  L  Y  K  R  :  I  Y  F  R  I  D  Q  E  T  M  G  A  G  G  N  M  S  T  P  T  T  K  K  S  H  L  Q  R  V  P  S  S  K  P  P  F  T  L  G  D  V  K  K  A  I  P  P  H  C  F  Q  R  S  L  I  R  S  F  S  Y  L  I  Q  D  L  I  L  V  S  V  F  Y  Y  I  A  N  T  Y  F  H  L  L  P  S  P  L  T  Y  L  A  W  P  A  Y  W  I  A  Q  G  C  V  S  T  G  I  W  V  I  G  H  E  C  G  H  H  G  F  S  D  Y  Q  W  V  D  D  T  V  G  L  I  L  H  S  A  L  L  T  P  Y  F  A  W  K  H  S  H  R  R  H  H  A  N  T  G  S  L  E  N  D  E  V  Y  I  P  R  F  K  S  K  L  R  W  Y  Y  K  Y  L  N  N  P  L  G  R  V  F  V  L  A  F  T  L  T  F  A  W  P  L  Y  L  M  F  N  I  S  G  K  K  Y  E  R  F  A  C  H  Y  D  P  N  S  P  I  Y  S  N  R  E  R  M  Q  I  Y  I  S  D  A  G  V  I  A  A  T  Y  V  L  Y  R  L  A  M  T  Q  G  L  T  W  V  L  C  M  Y  G  V  P  L  L  I  V  N  G  F  I  V  L  I  T  L  M  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  D  Y  L  R  G  A  L  A  T  V  D  R  D  Y  G  I  L  N  K  V  F  H  N  V  T  D  T  H  V  L  H  H  I  F  S  Y  I  S  H  Y  H  A  M  E  A  T  N  A  I  K  P  L  L  G  D  Y  Y  Q  V  D  D  T  P  I  L  K  A  M  W  R  D  T  K  E  C  I  Y  V  E  K  D  E  G  S  Q  G  R  G  V  Y  W  Y  K  N  K  L  *  K  *  N  T  K  *  L  V  K  S  F  N  L  I  R  R  C  K  Y  F  E  *  L  C  V  F  L  L  Y  F  I  V  K  C  W  F  *  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  S  H  L  S  L  T  Y  T  K  E :   S  I  L  G  L  I  K  R  P  W  E  L  V  E  I  C  L  L  Q  Q  L  K  K  V  I  S  K  E  F  H  L  R  S  P  L  L  H  L  A  M  *  R  R  P  F  L  L  T  A  S  N  V  L  L  F  D  P  S  L  I  L  F  K  I  S  Y  L  S  P  S  S  I  I  L  P  T  L  T  S  I  S  F  H  L  H  *  L  T  L  P  G  P  L  I  G  S  R  K  V  V  F  P  L  G  Y  G  S  L  D  T  N  V  V  I  M  A  S  V  I  T  N  G  *  M  T  L  L  V  S  S  Y  I  L  H  F  *  H  H  T  L  H  G  S  I  V  I  G  V  I  M  P  T  L  A  P  L  R  M  M  K  C  T  Y  L  G  L  N  P  N  *  D  G  T  T  N  T  *  T  I  H  *  D  E  Y  S  Y  L  P  S  P  S  P  L  P  G  L  Y  T  *  C  S  I  S  Q  A  K  N  M  N  V  L  H  V  T  M  I  Q  I  A  Q  S  I  L  T  A  R  E  C  K  S  T  F  Q  M  Q  V  *  L  Q  L  L  M  Y  Y  T  A  L  L  *  H  K  G  *  L  G  F  C  V  C  T  E  C  L  S  L  S  *  M  D  L  *  C  *  S  L  L  C  T  T  L  M  L  H  C  H  I  M  I  H  R  S  G  I  I  *  E  E  L  *  L  P  *  I  E  T  M  V  Y  *  T  R  C  S  I  M  L  L  I  L  M  S  C  I  I  Y  S  H  T  Y  H  I  T  M  Q  W  R  R  P  T  R  L  S  H  C  *  E  I  I  T  K  L  M  I  P  Q  F  *  R  Q  C  G  G  I  Q  R  S  A  S  M  *  R  R  T  K  D  L  K  E  E  V  F  I  G  I  K  T  S  F  E  S  R  I  P  S  N  W  L  N  L  L  T  *  *  E  D  A  S  I  L  N  N  Y  V  C  F  C  C  I  L  L  L  N  V  G  F  S  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   L  I  S  L  *  L  I  Q  K   : N  L  F  *  D  *  S  R  D  H  G  S  W  W  K  Y  V  Y  S  N  N  *  K  K  S  S  P  K  S  S  I  F  E  A  P  F  Y  T  W  R  C  E  E  G  H  S  S  S  L  L  P  T  F  S  Y  S  I  L  L  L  S  Y  S  R  S  H  T  C  L  R  L  L  L  Y  C  Q  H  L  L  P  S  P  S  I  S  I  N  L  P  C  L  A  R  L  L  D  R  A  R  L  C  F  H  W  D  M  G  H  W  T  R  M  W  S  S  W  L  Q  *  L  P  M  G  R  *  H  C  W  S  H  P  T  F  C  T  F  N  T  I  L  C  M  E  A  *  S  S  A  S  S  C  Q  H  W  L  P  *  E  *  *  S  V  H  T  *  V  *  I  Q  T  E  M  V  L  Q  I  L  E  Q  S  I  R  T  S  I  R  T  C  L  H  P  H  L  C  L  A  F  I  L  D  V  Q  Y  L  R  Q  K  I  *  T  F  C  M  S  L  *  S  K  *  P  N  L  F  *  P  R  E  N  A  N  L  H  F  R  C  R  C  D  C  S  Y  L  C  I  I  P  P  C  Y  D  T  R  A  N  L  G  S  V  Y  V  R  S  A  S  P  Y  R  E  W  I  Y  S  V  D  H  S  Y  A  P  H  S  C  F  I  A  T  L  *  F  I  G  V  G  L  S  K  R  S  F  S  Y  R  R  *  R  L  W  Y  T  K  Q  G  V  P  *  C  Y  *  Y  S  C  L  A  S  Y  I  L  I  H  I  T  L  P  C  N  G  G  D  Q  R  D  *  A  I  A  R  R  L  L  P  S  *  *  Y  P  N  F  K  G  N  V  E  G  Y  K  G  V  H  L  C  R  E  G  R  R  I  S  R  K  R  C  L  L  V  *  K  Q  A  L  K  V  E  Y  Q  V  I  G  *  I  F  *  P  N  K  K  M  Q  V  F  *  I  I  M  C  V  F  V  V  F  Y  C  *  M  L  V  L  V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73680" stop="73651"/>
                    <exon start="73298" stop="72132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSLFNLYKRIYFRIDQETMGAGGNMSTPTTKKSHLQRVPSSKPPFTLGDVKKAIPPHCFQRSLIRSFSYLIQDLILVSVFYYIANTYFHLLPSPLTYLAWPAYWIAQGCVSTGIWVIGHECGHHGFSDYQWVDDTVGLILHSALLTPYFAWKHSHRRHHANTGSLENDEVYIPRFKSKLRWYYKYLNNPLGRVFVLAFTLTFAWPLYLMFNISGKKYERFACHYDPNSPIYSNRERMQIYISDAGVIAATYVLYRLAMTQGLTWVLCMYGVPLLIVNGFIVLITLMHHTHASLPHYDSSEWDYLRGALATVDRDYGILNKVFHNVTDTHVLHHIFSYISHYHAMEATNAIKPLLGDYYQVDDTPILKAMWRDTKECIYVEKDEGSQGRGVYWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73693" e_stop="73559"/>
            <exon e_start="73458" e_stop="71951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="73693" e_stop="73559" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73558" i_stop="73459" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="73458" e_stop="71951" e_length="1508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73693" stop="73559"/>
              <exon start="73458" stop="72756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73176" stop="72702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73176" stop="72744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73061" stop="72453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73001" stop="72520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72765" stop="71951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAAGACATATATCTCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAAC : TTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  *  D  I  Y  L  I  S  L  *  L  I  Q  K  S  K  A  K  R  I  L  F  *  S  L  L  F  A  L  L  *  F  *  L  S  A  Y  H  Y  I  K  K  H  F  N  :  F  N  T  F  L  S  *  *  *  K  F  Y  L  C  L  I  C  H  A  W  L  N  C  I  L  T  S  V  *  *  Y  *  F  H  I  T  F  Y  I  I  T  I  I  V  N  Q  N  P  N  L  I  G  A  D  L  F  *  D  *  S  R  D  H  G  S  W  W  K  Y  V  Y  S  N  N  *  K  K  S  S  P  K  S  S  I  F  E  A  P  F  Y  T  W  R  C  E  E  G  H  S  S  S  L  L  P  T  F  S  Y  S  I  L  L  L  S  Y  S  R  S  H  T  C  L  R  L  L  L  Y  C  Q  H  L  L  P  S  P  S  I  S  I  N  L  P  C  L  A  R  L  L  D  R  A  R  L  C  F  H  W  D  M  G  H  W  T  R  M  W  S  S  W  L  Q  *  L  P  M  G  R  *  H  C  W  S  H  P  T  F  C  T  F  N  T  I  L  C  M  E  A  *  S  S  A  S  S  C  Q  H  W  L  P  *  E  *  *  S  V  H  T  *  V  *  I  Q  T  E  M  V  L  Q  I  L  E  Q  S  I  R  T  S  I  R  T  C  L  H  P  H  L  C  L  A  F  I  L  D  V  Q  Y  L  R  Q  K  I  *  T  F  C  M  S  L  *  S  K  *  P  N  L  F  *  P  R  E  N  A  N  L  H  F  R  C  R  C  D  C  S  Y  L  C  I  I  P  P  C  Y  D  T  R  A  N  L  G  S  V  Y  V  R  S  A  S  P  Y  R  E  W  I  Y  S  V  D  H  S  Y  A  P  H  S  C  F  I  A  T  L  *  F  I  G  V  G  L  S  K  R  S  F  S  Y  R  R  *  R  L  W  Y  T  K  Q  G  V  P  *  C  Y  *  Y  S  C  L  A  S  Y  I  L  I  H  I  T  L  P  C  N  G  G  D  Q  R  D  *  A  I  A  R  R  L  L  P  S  *  *  Y  P  N  F  K  G  N  V  E  G  Y  K  G  V  H  L  C  R  E  G  R  R  I  S  R  K  R  C  L  L  V  *  K  Q  A  L  K  V  E  Y  Q  V  I  G  *  I  F  *  P  N  K  K  M  Q  V  F  *  I  I  M  C  V  F  V  V  F  Y  C  *  M  L  V  L  V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  V  K  T  Y  I  S  S  L  F  N  L  Y  K  R  V  R  L  K  E  F  S  F  D  L  C  F  L  L  C  F  N  F  D  *  A  L  I  I  I  S  K  N  I  L  T :   L  T  L  S  Y  P  N  N  E  N  F  I  Y  V  *  F  A  M  H  G  *  I  V  F  *  L  L  F  N  N  I  N  F  I  L  L  F  I  L  *  L  S  *  *  T  K  I  Q  T  *  L  V  Q  I  Y  F  R  I  D  Q  E  T  M  G  A  G  G  N  M  S  T  P  T  T  K  K  S  H  L  Q  R  V  P  S  S  K  P  P  F  T  L  G  D  V  K  K  A  I  P  P  H  C  F  Q  R  S  L  I  R  S  F  S  Y  L  I  Q  D  L  I  L  V  S  V  F  Y  Y  I  A  N  T  Y  F  H  L  L  P  S  P  L  T  Y  L  A  W  P  A  Y  W  I  A  Q  G  C  V  S  T  G  I  W  V  I  G  H  E  C  G  H  H  G  F  S  D  Y  Q  W  V  D  D  T  V  G  L  I  L  H  S  A  L  L  T  P  Y  F  A  W  K  H  S  H  R  R  H  H  A  N  T  G  S  L  E  N  D  E  V  Y  I  P  R  F  K  S  K  L  R  W  Y  Y  K  Y  L  N  N  P  L  G  R  V  F  V  L  A  F  T  L  T  F  A  W  P  L  Y  L  M  F  N  I  S  G  K  K  Y  E  R  F  A  C  H  Y  D  P  N  S  P  I  Y  S  N  R  E  R  M  Q  I  Y  I  S  D  A  G  V  I  A  A  T  Y  V  L  Y  R  L  A  M  T  Q  G  L  T  W  V  L  C  M  Y  G  V  P  L  L  I  V  N  G  F  I  V  L  I  T  L  M  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  D  Y  L  R  G  A  L  A  T  V  D  R  D  Y  G  I  L  N  K  V  F  H  N  V  T  D  T  H  V  L  H  H  I  F  S  Y  I  S  H  Y  H  A  M  E  A  T  N  A  I  K  P  L  L  G  D  Y  Y  Q  V  D  D  T  P  I  L  K  A  M  W  R  D  T  K  E  C  I  Y  V  E  K  D  E  G  S  Q  G  R  G  V  Y  W  Y  K  N  K  L  *  K  *  N  T  K  *  L  V  K  S  F  N  L  I  R  R  C  K  Y  F  E  *  L  C  V  F  L  L  Y  F  I  V  K  C  W  F  *  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   L  R  H  I  S  H  L  S  L  T  Y  T  K  E  *  G  *  K  N  S  L  L  I  F  A  F  C  F  A  L  I  L  I  K  R  L  S  L  Y  Q  K  T  F  *   : L  *  H  F  L  I  L  I  M  K  I  L  F  M  F  D  L  P  C  M  V  E  L  Y  S  N  F  C  L  I  I  L  I  S  Y  Y  F  L  Y  Y  N  Y  H  S  K  P  K  S  K  L  N  W  C  R  S  I  L  G  L  I  K  R  P  W  E  L  V  E  I  C  L  L  Q  Q  L  K  K  V  I  S  K  E  F  H  L  R  S  P  L  L  H  L  A  M  *  R  R  P  F  L  L  T  A  S  N  V  L  L  F  D  P  S  L  I  L  F  K  I  S  Y  L  S  P  S  S  I  I  L  P  T  L  T  S  I  S  F  H  L  H  *  L  T  L  P  G  P  L  I  G  S  R  K  V  V  F  P  L  G  Y  G  S  L  D  T  N  V  V  I  M  A  S  V  I  T  N  G  *  M  T  L  L  V  S  S  Y  I  L  H  F  *  H  H  T  L  H  G  S  I  V  I  G  V  I  M  P  T  L  A  P  L  R  M  M  K  C  T  Y  L  G  L  N  P  N  *  D  G  T  T  N  T  *  T  I  H  *  D  E  Y  S  Y  L  P  S  P  S  P  L  P  G  L  Y  T  *  C  S  I  S  Q  A  K  N  M  N  V  L  H  V  T  M  I  Q  I  A  Q  S  I  L  T  A  R  E  C  K  S  T  F  Q  M  Q  V  *  L  Q  L  L  M  Y  Y  T  A  L  L  *  H  K  G  *  L  G  F  C  V  C  T  E  C  L  S  L  S  *  M  D  L  *  C  *  S  L  L  C  T  T  L  M  L  H  C  H  I  M  I  H  R  S  G  I  I  *  E  E  L  *  L  P  *  I  E  T  M  V  Y  *  T  R  C  S  I  M  L  L  I  L  M  S  C  I  I  Y  S  H  T  Y  H  I  T  M  Q  W  R  R  P  T  R  L  S  H  C  *  E  I  I  T  K  L  M  I  P  Q  F  *  R  Q  C  G  G  I  Q  R  S  A  S  M  *  R  R  T  K  D  L  K  E  E  V  F  I  G  I  K  T  S  F  E  S  R  I  P  S  N  W  L  N  L  L  T  *  *  E  D  A  S  I  L  N  N  Y  V  C  F  C  C  I  L  L  L  N  V  G  F  S  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73307" stop="72132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQIYFRIDQETMGAGGNMSTPTTKKSHLQRVPSSKPPFTLGDVKKAIPPHCFQRSLIRSFSYLIQDLILVSVFYYIANTYFHLLPSPLTYLAWPAYWIAQGCVSTGIWVIGHECGHHGFSDYQWVDDTVGLILHSALLTPYFAWKHSHRRHHANTGSLENDEVYIPRFKSKLRWYYKYLNNPLGRVFVLAFTLTFAWPLYLMFNISGKKYERFACHYDPNSPIYSNRERMQIYISDAGVIAATYVLYRLAMTQGLTWVLCMYGVPLLIVNGFIVLITLMHHTHASLPHYDSSEWDYLRGALATVDRDYGILNKVFHNVTDTHVLHHIFSYISHYHAMEATNAIKPLLGDYYQVDDTPILKAMWRDTKECIYVEKDEGSQGRGVYWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76813" PGL_stop="78211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76813" e_stop="76825"/>
            <exon e_start="76913" e_stop="78211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76813" e_stop="76825" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76826" i_stop="76912" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76913" e_stop="78211" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76813" stop="76825"/>
              <exon start="76913" stop="77542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76814" stop="76825"/>
              <exon start="76913" stop="77621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76817" stop="76825"/>
              <exon start="76913" stop="77285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77022" stop="77755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77022" stop="77691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77381" stop="77987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77381" stop="77877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77472" stop="78187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77503" stop="78187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77653" stop="78211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACTTTGAG : ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGTACAAACATTGTTAA</gDNA_template>
            <first_frame> F  E  L  *   : D  L  G  Y  S  K  S  K  N  G  R  W  W  *  F  Y  E  *  S  N  N  *  K  S  S  S  K  F  K  A  P  F  Y  D  W  *  Y  Q  E  G  Y  P  S  S  L  L  S  T  L  S  R  S  L  L  F  L  S  Y  L  R  S  H  T  C  L  H  L  L  L  H  R  L  Y  L  F  P  R  P  S  K  T  V  L  S  I  P  S  M  A  Y  L  L  D  R  S  R  M  C  L  H  R  T  M  G  H  C  P  *  M  W  P  P  I  L  *  *  L  P  M  D  K  *  H  Y  R  F  Y  P  P  L  C  T  F  N  T  I  L  L  M  E  I  *  S  S  S  S  S  L  Q  Y  *  F  P  *  A  *  *  K  S  C  A  Q  T  *  S  Q  T  K  M  V  H  *  I  I  R  E  *  S  T  W  T  I  I  I  N  C  L  H  T  H  C  W  L  T  F  I  L  C  H  Q  Y  S  R  *  T  L  *  S  F  C  K  S  L  *  S  I  *  P  Y  L  Q  *  P  *  E  T  T  N  L  H  L  R  C  R  C  D  C  N  Y  L  F  I  I  S  R  C  S  N  T  R  P  N  L  G  Y  M  H  L  W  S  T  P  C  N  C  E  W  V  H  S  V  N  N  F  T  A  S  H  S  C  F  I  A  T  L  *  F  I  R  V  E  L  A  K  R  S  S  S  Y  G  R  *  R  L  W  C  P  K  *  G  V  S  S  Y  R  R  Y  T  R  S  T  S  S  I  F  K  Y  T  T  L  S  C  C  R  G  N  Q  G  H  Q  A  V  T  R  R  I  L  P  I  *  W  N  S  I  L  Q  S  N  M  E  G  F  *  *  V  S  I  C  G  E  R  *  S  I  S  T  S  G  Y  F  L  V  Y  K  L  Q  H  I  I  F  I  N  N  N  W  L  T  N  V  L  A  N  A  *  V  V  V  V  I  C  I  L  D  G  V  L  S  *  *  *  *  Y  C  Y  F  N  F  I  V  Q  T  L  L  </first_frame>
            <second_frame>  L  N  F  E  :  I  *  D  I  A  K  A  K  M  G  G  G  G  N  S  M  S  N  P  T  T  K  N  R  V  P  S  S  K  P  P  F  T  I  G  D  I  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  S  S  Y  L  I  Y  D  L  I  L  V  F  I  F  Y  Y  I  A  S  T  Y  F  H  V  L  P  K  P  Y  Y  P  Y  L  A  W  P  I  Y  W  I  V  Q  G  C  V  C  T  A  L  W  V  I  A  H  E  C  G  H  Q  S  F  S  D  Y  Q  W  I  N  D  T  I  G  F  I  L  H  S  A  L  L  T  P  Y  F  S  W  K  Y  S  H  R  R  H  H  S  N  T  N  S  L  E  H  D  E  N  H  V  P  K  L  E  V  K  L  K  W  Y  T  K  L  Y  V  N  N  P  L  G  R  L  L  L  I  V  F  T  L  T  A  G  L  P  L  Y  Y  A  I  N  I  A  G  R  P  Y  D  R  F  A  S  H  Y  D  P  Y  S  P  I  Y  N  D  R  E  R  L  Q  I  Y  I  S  D  A  G  V  I  A  T  I  Y  L  L  Y  R  V  A  L  T  Q  G  L  T  W  V  I  C  I  Y  G  V  P  L  V  I  V  N  G  F  I  V  L  I  T  L  L  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  S  W  L  K  G  A  L  A  T  V  D  R  D  Y  G  V  L  N  K  V  F  H  H  I  V  D  T  H  V  L  H  H  L  F  S  S  I  P  H  Y  H  A  V  E  A  T  K  A  I  K  P  L  L  G  E  Y  Y  Q  F  D  G  T  P  F  Y  K  A  I  W  R  D  F  N  E  C  Q  Y  V  E  K  D  E  A  S  Q  H  Q  G  I  F  W  Y  T  N  Y  N  T  *  Y  S  L  I  T  T  G  L  R  M  C  *  P  M  H  E  L  L  L  L  F  V  F  W  M  V  C  Y  H  N  N  N  N  I  V  T  L  I  L  L  Y  K  H  C  * </second_frame>
            <third_frame>   *  T  L  R :   F  R  I  *  Q  K  Q  K  W  E  V  V  V  I  L  *  V  I  Q  Q  L  K  I  E  F  Q  V  Q  S  P  L  L  R  L  V  I  S  R  R  L  S  L  L  I  A  F  N  A  L  S  F  A  P  L  P  I  L  F  T  I  S  Y  L  S  S  S  S  I  T  S  P  L  L  I  S  T  S  F  Q  N  R  I  I  H  T  *  H  G  L  F  I  G  S  F  K  D  V  F  A  P  H  Y  G  S  L  P  M  N  V  A  T  N  P  L  V  I  T  N  G  *  M  T  L  S  V  L  S  S  T  L  H  F  *  H  H  T  S  H  G  N  I  V  I  V  V  I  T  P  I  L  I  P  L  S  M  M  K  I  M  C  P  N  L  K  S  N  *  N  G  T  L  N  Y  T  *  I  I  H  L  D  D  Y  Y  *  L  S  S  H  S  L  L  A  Y  L  Y  T  M  P  S  I  *  P  V  D  L  M  I  V  L  Q  V  I  M  I  H  I  A  L  S  T  M  T  V  R  D  Y  K  F  T  S  Q  M  Q  V  *  L  Q  L  F  I  Y  Y  I  A  L  L  *  H  K  A  *  L  G  L  Y  A  S  M  E  Y  P  L  *  L  *  M  G  S  *  C  *  *  L  Y  C  I  T  L  M  L  H  C  H  I  M  I  H  Q  S  G  V  G  *  K  E  L  *  L  R  *  I  E  T  M  V  S  *  I  R  C  F  I  I  S  *  I  H  T  F  Y  I  I  Y  F  Q  V  Y  H  I  I  M  L  S  R  Q  P  R  P  S  S  R  Y  *  E  N  T  T  N  L  M  E  L  H  F  T  K  Q  Y  G  G  I  L  M  S  V  N  M  W  R  K  M  K  H  L  N  I  R  V  F  S  G  I  Q  I  T  T  H  N  I  H  *  *  Q  L  A  Y  E  C  V  S  Q  C  M  S  C  C  C  Y  L  Y  F  G  W  C  V  I  I  I  I  I  I  L  L  L  *  F  Y  C  T  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76919" stop="78076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIAKAKMGGGGNSMSNPTTKNRVPSSKPPFTIGDIKKAIPPHCFQRSLVRSSSYLIYDLILVFIFYYIASTYFHVLPKPYYPYLAWPIYWIVQGCVCTALWVIAHECGHQSFSDYQWINDTIGFILHSALLTPYFSWKYSHRRHHSNTNSLEHDENHVPKLEVKLKWYTKLYVNNPLGRLLLIVFTLTAGLPLYYAINIAGRPYDRFASHYDPYSPIYNDRERLQIYISDAGVIATIYLLYRVALTQGLTWVICIYGVPLVIVNGFIVLITLLHHTHASLPHYDSSEWSWLKGALATVDRDYGVLNKVFHHIVDTHVLHHLFSSIPHYHAVEATKAIKPLLGEYYQFDGTPFYKAIWRDFNECQYVEKDEASQHQGIFWYTNYNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="88042" PGL_stop="87240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88042" e_stop="87690"/>
            <exon e_start="87610" e_stop="87378"/>
            <exon e_start="87302" e_stop="87240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.938"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.948"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="88042" e_stop="87690" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="87689" i_stop="87611" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="87610" e_stop="87378" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87377" i_stop="87303" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="87302" e_stop="87240" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88042" stop="87690"/>
              <exon start="87610" stop="87378"/>
              <exon start="87302" stop="87240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88042" stop="87690"/>
              <exon start="87610" stop="87431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACCTATTGCATAAAACAACAAGTGGCTCTACCACAAGTGTTTTTATATGGAGCCATGGAAAGACCTGACCGGAAAAGTAGTGATGGTGACTGGGGCCTCCTCGGGAATCGGGCTAGAGTTCTGTCTCGACTTGGCAAAAGCCGGCTGCAGGATCATTGCTTCCGCTCGTCGTGTTGACAGGCTGAAAACTCTCTGCAACAAGATTAATAATTCAGATGGCCTGGCTCGGCGTGCAATCGCTGTCCAGCTCGACATTACTGCTGATAGTGCTACTATTCAGGCTGCGGTACAAATAGCTTGGGATGCCTTTGGACGTATCGATGCCTTGATTAACAATGCAGGCCTTAGAG : GTAATGTGTACGATTCATTGGATTTGCCAGAAGAGGAATGGGAACATACCTATAAGACGAATCTAAGAGGGGCATGGTTGGTGTCGAAATATGTATGTAGACATATGCGCGATTCTAAACAGGGCGGAGGCTCTGTGATTAATATCTCTTCAATTGCTGGTTTAAATCGAGTACTAATACCCGGGGGTCTTGCTTATGCTTCTTCGAAGATGGCTCTTGACATGGTCACTAAG : ATGATGGCCCTTGAGTTGGGAGTAGACAATATCAGAGTGAACTCAATATCACCAGGAATTTTC</gDNA_template>
            <first_frame> I  T  Y  C  I  K  Q  Q  V  A  L  P  Q  V  F  L  Y  G  A  M  E  R  P  D  R  K  S  S  D  G  D  W  G  L  L  G  N  R  A  R  V  L  S  R  L  G  K  S  R  L  Q  D  H  C  F  R  S  S  C  *  Q  A  E  N  S  L  Q  Q  D  *  *  F  R  W  P  G  S  A  C  N  R  C  P  A  R  H  Y  C  *  *  C  Y  Y  S  G  C  G  T  N  S  L  G  C  L  W  T  Y  R  C  L  D  *  Q  C  R  P  *  R :   *  C  V  R  F  I  G  F  A  R  R  G  M  G  T  Y  L  *  D  E  S  K  R  G  M  V  G  V  E  I  C  M  *  T  Y  A  R  F  *  T  G  R  R  L  C  D  *  Y  L  F  N  C  W  F  K  S  S  T  N  T  R  G  S  C  L  C  F  F  E  D  G  S  *  H  G  H  *   : D  D  G  P  *  V  G  S  R  Q  Y  Q  S  E  L  N  I  T  R  N  F  </first_frame>
            <second_frame>  L  P  I  A  *  N  N  K  W  L  Y  H  K  C  F  Y  M  E  P  W  K  D  L  T  G  K  V  V  M  V  T  G  A  S  S  G  I  G  L  E  F  C  L  D  L  A  K  A  G  C  R  I  I  A  S  A  R  R  V  D  R  L  K  T  L  C  N  K  I  N  N  S  D  G  L  A  R  R  A  I  A  V  Q  L  D  I  T  A  D  S  A  T  I  Q  A  A  V  Q  I  A  W  D  A  F  G  R  I  D  A  L  I  N  N  A  G  L  R   : G  N  V  Y  D  S  L  D  L  P  E  E  E  W  E  H  T  Y  K  T  N  L  R  G  A  W  L  V  S  K  Y  V  C  R  H  M  R  D  S  K  Q  G  G  G  S  V  I  N  I  S  S  I  A  G  L  N  R  V  L  I  P  G  G  L  A  Y  A  S  S  K  M  A  L  D  M  V  T  K  :  M  M  A  L  E  L  G  V  D  N  I  R  V  N  S  I  S  P  G  I  F </second_frame>
            <third_frame>   Y  L  L  H  K  T  T  S  G  S  T  T  S  V  F  I  W  S  H  G  K  T  *  P  E  K  *  *  W  *  L  G  P  P  R  E  S  G  *  S  S  V  S  T  W  Q  K  P  A  A  G  S  L  L  P  L  V  V  L  T  G  *  K  L  S  A  T  R  L  I  I  Q  M  A  W  L  G  V  Q  S  L  S  S  S  T  L  L  L  I  V  L  L  F  R  L  R  Y  K  *  L  G  M  P  L  D  V  S  M  P  *  L  T  M  Q  A  L  E  :  V  M  C  T  I  H  W  I  C  Q  K  R  N  G  N  I  P  I  R  R  I  *  E  G  H  G  W  C  R  N  M  Y  V  D  I  C  A  I  L  N  R  A  E  A  L  *  L  I  S  L  Q  L  L  V  *  I  E  Y  *  Y  P  G  V  L  L  M  L  L  R  R  W  L  L  T  W  S  L  R :   *  W  P  L  S  W  E  *  T  I  S  E  *  T  Q  Y  H  Q  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88026" stop="87690"/>
                    <exon start="87610" stop="87378"/>
                    <exon start="87302" stop="87240"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNKWLYHKCFYMEPWKDLTGKVVMVTGASSGIGLEFCLDLAKAGCRIIASARRVDRLKTLCNKINNSDGLARRAIAVQLDITADSATIQAAVQIAWDAFGRIDALINNAGLRGNVYDSLDLPEEEWEHTYKTNLRGAWLVSKYVCRHMRDSKQGGGSVINISSIAGLNRVLIPGGLAYASSKMALDMVTKMMALELGVDNIRVNSISPGIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="89058" PGL_stop="91741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89058" e_stop="89398"/>
            <exon e_start="90725" e_stop="90834"/>
            <exon e_start="90917" e_stop="90973"/>
            <exon e_start="91055" e_stop="91354"/>
            <exon e_start="91663" e_stop="91741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.156" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89058" e_stop="89398" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="89399" i_stop="90724" i_length="1326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90725" e_stop="90834" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.949">
            <gDNA_intron_boundary i_start="90835" i_stop="90916" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90917" e_stop="90973" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="90974" i_stop="91054" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91055" e_stop="91354" e_length="300"/>
          </exon>
          <intron i_serial="4" don_prob="0.156" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91355" i_stop="91662" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91663" e_stop="91741" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89058" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89062" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89069" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89076" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89087" stop="89398"/>
              <exon start="90725" stop="90834"/>
              <exon start="90917" stop="90973"/>
              <exon start="91055" stop="91354"/>
              <exon start="91663" stop="91741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAG : GTGTTGCATGCTTGCTACACGAAAGTGTTACCCTCTGTACCGGTCAATAACCCTCAGCTTGTAGCATGGTCAGAATCAGTGGCGGAGTTACTTGAATTGGATCCTAGAGA : ATTTGAGAGGCCTGATTTTCCCCTTATTTTCTCTGGGGCATCACCATTGGTGGGAGC : GATACCTTATGCCCAAAATTATGGAGGACATCAGTTTGGCATGTGGGCCGGGCAGTTAGGGGATGGTAGGGCAATAACTCTTGGAGAGATATTGAATTCAAAGTCACAAAGGTGGGAGCTGCAGCTTAAGGGTGCTGGAAAGACCCCATATAGTCGTTTTGCTGATGGTCTTGCAGTGCTTCGTAGTAGCATCCGAGAATTCCTTTGTAGTGAAGCAATGCACGGTCTTGGAATCCCAACAACACGAGCACTTTGTCTAGTGACGACGGGAAAAGATGTTATGAGGGATATGTTTTATGA : TGGAAATCCCAAAGATGAACCTGGTGCAATTGTCTGCAGAGTTGCTCAATCGTTTCTGCGTTTTGGTTCTTATCAACTG</gDNA_template>
            <first_frame> H  Q  L  S  K  K  C  F  P  P  F  L  T  P  L  L  P  P  P  L  S  S  S  L  P  P  P  N  F  S  D  P  D  S  L  L  V  L  S  S  S  Q  F  I  K  N  D  T  V  L  C  F  L  I  A  Q  Q  L  Q  W  T  R  L  P  P  L  I  Q  L  L  M  I  *  R  N  K  T  *  K  E  L  K  L  S  L  N  *  I  S  K  S  L  I  G  I  T  L  L  F  V  N  Y  L  A  T  P  E  V  I  V  F  Q  E  R :   C  C  M  L  A  T  R  K  C  Y  P  L  Y  R  S  I  T  L  S  L  *  H  G  Q  N  Q  W  R  S  Y  L  N  W  I  L  E   : N  L  R  G  L  I  F  P  L  F  S  L  G  H  H  H  W  W  E   : R  Y  L  M  P  K  I  M  E  D  I  S  L  A  C  G  P  G  S  *  G  M  V  G  Q  *  L  L  E  R  Y  *  I  Q  S  H  K  G  G  S  C  S  L  R  V  L  E  R  P  H  I  V  V  L  L  M  V  L  Q  C  F  V  V  A  S  E  N  S  F  V  V  K  Q  C  T  V  L  E  S  Q  Q  H  E  H  F  V  *  *  R  R  E  K  M  L  *  G  I  C  F  M   : M  E  I  P  K  M  N  L  V  Q  L  S  A  E  L  L  N  R  F  C  V  L  V  L  I  N   </first_frame>
            <second_frame>  I  N  Y  Q  K  N  A  F  L  P  F  S  H  L  F  F  H  H  R  F  L  P  L  F  L  R  Q  I  S  P  T  Q  I  L  F  L  S  F  P  V  P  N  S  S  K  T  T  P  F  S  V  F  S  *  H  S  S  F  N  G  L  G  C  H  R  *  F  S  C  *  *  F  K  E  T  K  L  K  R  S  *  N  *  A  *  I  E  S  R  R  A  *  L  G  *  L  F  C  S  *  T  T  W  R  P  Q  K  *  *  Y  S  K  R   : G  V  A  C  L  L  H  E  S  V  T  L  C  T  G  Q  *  P  S  A  C  S  M  V  R  I  S  G  G  V  T  *  I  G  S  *  R  :  I  *  E  A  *  F  S  P  Y  F  L  W  G  I  T  I  G  G  S  :  D  T  L  C  P  K  L  W  R  T  S  V  W  H  V  G  R  A  V  R  G  W  *  G  N  N  S  W  R  D  I  E  F  K  V  T  K  V  G  A  A  A  *  G  C  W  K  D  P  I  *  S  F  C  *  W  S  C  S  A  S  *  *  H  P  R  I  P  L  *  *  S  N  A  R  S  W  N  P  N  N  T  S  T  L  S  S  D  D  G  K  R  C  Y  E  G  Y  V  L  *  :  W  K  S  Q  R  *  T  W  C  N  C  L  Q  S  C  S  I  V  S  A  F  W  F  L  S  T  </second_frame>
            <third_frame>   S  I  I  K  K  M  L  S  S  L  S  H  T  S  S  S  T  T  A  F  F  L  S  S  S  A  K  F  L  R  P  R  F  S  S  C  P  F  Q  F  P  I  H  Q  K  R  H  R  S  L  F  S  H  S  T  A  A  S  M  D  S  A  A  T  V  D  S  V  A  D  D  L  K  K  Q  N  L  K  G  V  E  I  K  L  K  L  N  L  E  E  L  N  W  D  N  S  F  V  R  E  L  P  G  D  P  R  S  D  S  I  P  R  E  :  V  L  H  A  C  Y  T  K  V  L  P  S  V  P  V  N  N  P  Q  L  V  A  W  S  E  S  V  A  E  L  L  E  L  D  P  R  E :   F  E  R  P  D  F  P  L  I  F  S  G  A  S  P  L  V  G  A :   I  P  Y  A  Q  N  Y  G  G  H  Q  F  G  M  W  A  G  Q  L  G  D  G  R  A  I  T  L  G  E  I  L  N  S  K  S  Q  R  W  E  L  Q  L  K  G  A  G  K  T  P  Y  S  R  F  A  D  G  L  A  V  L  R  S  S  I  R  E  F  L  C  S  E  A  M  H  G  L  G  I  P  T  T  R  A  L  C  L  V  T  T  G  K  D  V  M  R  D  M  F  Y  D :   G  N  P  K  D  E  P  G  A  I  V  C  R  V  A  Q  S  F  L  R  F  G  S  Y  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89060" stop="89398"/>
                    <exon start="90725" stop="90834"/>
                    <exon start="90917" stop="90973"/>
                    <exon start="91055" stop="91354"/>
                    <exon start="91663" stop="91741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIKKMLSSLSHTSSSTTAFFLSSSAKFLRPRFSSCPFQFPIHQKRHRSLFSHSTAASMDSAATVDSVADDLKKQNLKGVEIKLKLNLEELNWDNSFVRELPGDPRSDSIPREVLHACYTKVLPSVPVNNPQLVAWSESVAELLELDPREFERPDFPLIFSGASPLVGAIPYAQNYGGHQFGMWAGQLGDGRAITLGEILNSKSQRWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHGLGIPTTRALCLVTTGKDVMRDMFYDGNPKDEPGAIVCRVAQSFLRFGSYQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="91816" PGL_stop="94766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91816" e_stop="91892"/>
            <exon e_start="92313" e_stop="92619"/>
            <exon e_start="92729" e_stop="93002"/>
            <exon e_start="94358" e_stop="94766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91816" e_stop="91892" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91893" i_stop="92312" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92313" e_stop="92619" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92620" i_stop="92728" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92729" e_stop="93002" e_length="274"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93003" i_stop="94357" i_length="1355"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="94358" e_stop="94766" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91816" stop="91892"/>
              <exon start="92313" stop="92619"/>
              <exon start="92729" stop="92904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91816" stop="91892"/>
              <exon start="92313" stop="92619"/>
              <exon start="92729" stop="92831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92838" stop="93002"/>
              <exon start="94358" stop="94766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAG : CTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG : ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG : CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAATAAAAAAAATAAATGAAAAAGT</gDNA_template>
            <first_frame> P  F  G  E  Y  D  *  E  *  K  H  I  S  *  H  R  R  G  F  N  F  K  Q  V  C  S :   L  G  S  G  S  C  *  E  D  C  V  H  D  C  Q  V  A  G  C  W  F  H  T  W  S  H  E  H  *  *  Y  E  R  V  R  T  H  Y  *  L  W  S  L  W  L  F  R  F  F  *  S  Q  L  H  T  K  Y  H  *  S  S  W  Q  K  I  L  F  C  K  S  A  R  C  R  F  M  E  Y  C  A  V  Y  L  C  S  I  Y  C  R  V  A  *  *  *  R  G  R  L  C  Y  G  K  :  I  W  *  Q  I  H  G  *  L  S  R  Y  H  D  Q  E  T  W  S  D  K  V  Q  *  K  V  D  W  *  T  T  Q  E  Y  G  L  R  *  S  *  L  H  K  F  L  S  I  S  I  K  H  Q  S  *  S  C  N  S  R  G  P  I  I  D  S  S  Q  R  C  S  L  R  Y  W  Y  G  T  Q  G  S  L  D  *  L  D  K  V  I  Y  T  R   : A  L  H  N  W  C  I  R  *  G  E  E  S  F  N  E  F  C  K  S  K  V  H  P  Q  K  L  S  M  P  E  C  H  *  C  S  R  T  R  R  F  *  G  G  S  A  V  I  E  G  Y  A  M  S  I  *  *  T  A  W  Y  G  E  I  C  T  L  A  S  S  L  G  S  S  S  G  C  M  H  A  F  L  F  L  I  R  F  P  G  V  C  L  C  F  L  V  P  H  N  I  S  T  M  *  Y  Q  S  F  T  C  I  Y  I  T  S  L  P  A  R  A  L  H  V  Y  S  K  *  K  S  I  K  K  I  N  E  K   </first_frame>
            <second_frame>  H  L  E  N  M  T  R  S  E  S  I  S  A  N  T  D  V  D  L  T  S  N  K  Y  A   : A  W  A  V  E  V  A  E  R  T  A  S  M  I  A  R  W  Q  D  V  G  F  T  H  G  V  M  N  T  D  N  M  S  V  L  G  L  T  I  D  Y  G  P  F  G  F  L  D  S  F  D  P  S  Y  T  P  N  T  T  D  L  P  G  R  R  Y  C  F  A  N  Q  P  D  V  G  L  W  N  I  A  Q  F  T  S  A  L  S  T  A  E  L  L  S  D  K  E  A  D  Y  A  M  E  R :   Y  G  N  K  F  M  D  D  Y  Q  D  I  M  T  R  K  L  G  L  T  K  Y  N  K  K  L  I  G  E  L  L  K  N  M  V  S  D  K  V  D  Y  T  N  F  F  R  S  L  S  N  I  K  A  D  P  A  I  P  E  D  Q  L  L  I  P  L  K  D  V  L  L  D  I  G  M  E  R  R  E  A  W  T  N  W  I  K  S  Y  I  Q  E  :  L  S  T  T  G  V  L  D  E  E  R  K  V  S  M  N  F  V  N  P  K  Y  I  L  R  N  Y  L  C  Q  N  A  I  D  A  A  E  Q  G  D  F  E  E  V  R  Q  L  L  K  V  M  Q  C  P  F  D  E  Q  P  G  M  E  K  Y  A  R  L  P  P  A  W  A  H  R  P  G  V  C  M  L  S  C  S  S  *  G  F  R  V  Y  A  Y  A  F  L  F  L  I  I  S  P  L  C  N  T  R  V  S  L  V  Y  I  *  L  V  S  R  H  V  R  C  T  C  I  P  N  K  N  Q  *  K  K  *  M  K  K  </second_frame>
            <third_frame>   I  W  R  I  *  L  G  V  K  A  Y  Q  L  T  Q  T  W  I  *  L  Q  T  S  M  Q  :  L  G  Q  W  K  L  L  R  G  L  R  P  *  L  P  G  G  R  M  L  V  S  H  M  E  S  *  T  L  I  I  *  A  C  *  D  S  L  L  T  M  V  P  L  A  F  *  I  L  L  I  P  V  T  H  Q  I  P  L  I  F  L  A  E  D  I  V  L  Q  I  S  Q  M  *  V  Y  G  I  L  R  S  L  P  L  L  Y  L  L  P  S  C  L  V  I  K  R  Q  I  M  L  W  K   : D  M  V  T  N  S  W  M  I  I  K  I  S  *  P  G  N  L  V  *  Q  S  T  I  K  S  *  L  V  N  Y  S  R  I  W  S  P  I  K  L  I  T  Q  I  S  F  D  L  Y  Q  T  S  K  L  I  L  Q  F  Q  R  T  N  Y  *  F  L  S  K  M  F  S  *  I  L  V  W  N  A  G  K  P  G  L  T  G  *  S  H  I  Y  K  S :   S  P  Q  L  V  Y  *  M  R  R  G  K  F  Q  *  I  L  *  I  Q  S  T  S  S  E  T  I  Y  A  R  M  P  L  M  Q  Q  N  K  A  I  L  R  R  F  G  S  Y  *  R  L  C  N  V  H  L  M  N  S  L  V  W  R  N  M  H  A  C  L  Q  L  G  L  I  V  R  V  Y  A  C  F  L  V  P  H  K  V  S  G  C  M  L  M  L  S  C  S  S  *  Y  L  H  Y  V  I  P  E  F  H  L  Y  I  Y  N  *  S  P  G  T  C  V  A  R  V  F  Q  I  K  I  N  K  K  N  K  *  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91817" stop="91892"/>
                    <exon start="92313" stop="92619"/>
                    <exon start="92729" stop="93002"/>
                    <exon start="94358" stop="94612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLENMTRSESISANTDVDLTSNKYAAWAVEVAERTASMIARWQDVGFTHGVMNTDNMSVLGLTIDYGPFGFLDSFDPSYTPNTTDLPGRRYCFANQPDVGLWNIAQFTSALSTAELLSDKEADYAMERYGNKFMDDYQDIMTRKLGLTKYNKKLIGELLKNMVSDKVDYTNFFRSLSNIKADPAIPEDQLLIPLKDVLLDIGMERREAWTNWIKSYIQELSTTGVLDEERKVSMNFVNPKYILRNYLCQNAIDAAEQGDFEEVRQLLKVMQCPFDEQPGMEKYARLPPAWAHRPGVCMLSCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="98821" PGL_stop="98236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98821" e_stop="98696"/>
            <exon e_start="98619" e_stop="98444"/>
            <exon e_start="98364" e_stop="98236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.913"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.966"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="98821" e_stop="98696" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98695" i_stop="98620" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="98619" e_stop="98444" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98443" i_stop="98365" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98364" e_stop="98236" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98821" stop="98696"/>
              <exon start="98619" stop="98444"/>
              <exon start="98364" stop="98236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAATTGTAAGATCCCGAGGTTTTTTCCCAAATGCATACTGGTACTGGATTGGTGTCGGTGCACTTATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTTTCTTAACC : CACTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAACAACAAACACTGGGAAAGAAGTACCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCCATCACCTTCAATGAAGTTACATACTCTGTTGACATGCCTCAG : GAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</gDNA_template>
            <first_frame> L  Q  L  *  D  P  E  V  F  S  Q  M  H  T  G  T  G  L  V  S  V  H  L  L  V  S  Q  S  S  L  T  S  A  T  V  L  H  S  L  F  L  T  :  H  L  V  S  R  K  V  *  Y  Q  K  T  V  M  M  P  K  Q  Q  T  L  G  K  K  Y  P  L  V  R  A  R  I  R  K  R  E  W  F  F  H  L  N  R  I  P  S  P  S  M  K  L  H  T  L  L  T  C  L  R :   K  *  K  I  K  V  P  L  K  I  D  W  Y  F  *  M  V  Y  A  E  L  S  G  P  V  F  *  Q  H  *  W  E  L  V  A  L  E  K  Q  R  *  W   </first_frame>
            <second_frame>  C  N  C  K  I  P  R  F  F  P  K  C  I  L  V  L  D  W  C  R  C  T  Y  W  F  H  N  R  L  *  H  L  L  Q  Y  C  T  R  F  S  *  P :   T  W  *  A  A  R  Y  D  I  R  R  Q  *  *  C  Q  N  N  K  H  W  E  R  S  T  H  *  *  G  P  E  *  E  K  G  N  G  S  S  I  *  T  A  F  H  H  L  Q  *  S  Y  I  L  C  *  H  A  S   : G  N  E  K  S  R  C  H  *  R  *  I  G  T  S  E  W  C  M  R  S  F  Q  A  R  C  F  D  S  I  D  G  S  *  W  R  W  K  N  N  V  N  G  </second_frame>
            <third_frame>   A  I  V  R  S  R  G  F  F  P  N  A  Y  W  Y  W  I  G  V  G  A  L  I  G  F  T  I  V  F  N  I  C  Y  S  I  A  L  A  F  L  N   : P  L  G  K  P  Q  G  M  I  S  E  D  S  D  D  A  K  T  T  N  T  G  K  E  V  P  T  S  E  G  Q  N  K  K  K  G  M  V  L  P  F  E  P  H  S  I  T  F  N  E  V  T  Y  S  V  D  M  P  Q  :  E  M  K  N  Q  G  A  T  E  D  R  L  V  L  L  N  G  V  C  G  A  F  R  P  G  V  L  T  A  L  M  G  V  S  G  A  G  K  T  T  L  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98819" stop="98696"/>
                    <exon start="98619" stop="98444"/>
                    <exon start="98364" stop="98236"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIVRSRGFFPNAYWYWIGVGALIGFTIVFNICYSIALAFLNPLGKPQGMISEDSDDAKTTNTGKEVPTSEGQNKKKGMVLPFEPHSITFNEVTYSVDMPQEMKNQGATEDRLVLLNGVCGAFRPGVLTALMGVSGAGKTTLMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="104994" PGL_stop="104093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104994" e_stop="104922"/>
            <exon e_start="104851" e_stop="104597"/>
            <exon e_start="104503" e_stop="104093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.379" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.988"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104994" e_stop="104922" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.379">
            <gDNA_intron_boundary i_start="104921" i_stop="104852" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="104851" e_stop="104597" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="104596" i_stop="104504" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="104503" e_stop="104093" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104994" stop="104922"/>
              <exon start="104851" stop="104597"/>
              <exon start="104503" stop="104093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104989" stop="104922"/>
              <exon start="104851" stop="104597"/>
              <exon start="104503" stop="104108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104287" stop="104093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104286" stop="104098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104286" stop="104108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA : ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT : AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</gDNA_template>
            <first_frame> C  *  A  Y  S  I  L  Q  R  K  S  C  W  N  V  F  F  P  P  L  C  L  W  T   : N  F  H  *  N  T  I  C  L  C  A  S  C  Y  L  C  C  Y  H  L  C  Y  D  R  I  *  M  D  S  E  Q  I  L  L  V  L  V  Y  H  V  F  H  F  L  V  F  H  L  L  W  Y  D  E  C  C  R  F  P  K  S  K  Y  C  A  N  C  L  S  L  R  L  F  N  V  E  S  F  L  R  I  H  D  S  A  T   : *  Y  A  H  M  V  E  M  V  L  L  G  *  S  C  C  L  D  I  V  W  F  G  C  I  A  I  R  R  P  P  R  *  N  Y  *  Y  R  *  D  I  Q  T  I  L  E  A  L  L  W  V  Q  A  *  F  S  W  S  S  C  S  C  D  C  C  I  C  C  C  F  C  L  H  I  W  F  G  H  *  V  F  Q  L  P  E  K  I  E  E  L  T  C  *  R  W  N  I  H  E  M  V  I  K  L  V  Y  S  G  Y  H  L  N  K  Y  I  Y  V  L  F  V  L  Y  R  T  T  M  Q  *  N  D  F  V  S  L  N  R  L  </first_frame>
            <second_frame>  V  E  R  T  V  F  Y  R  E  R  A  A  G  M  Y  S  S  L  P  Y  A  F  G  Q  :  T  F  I  E  I  P  Y  V  F  V  Q  A  V  T  Y  A  V  I  I  Y  A  M  I  G  F  E  W  T  V  S  K  F  F  W  Y  L  F  I  M  Y  F  T  F  L  Y  F  T  F  Y  G  M  M  S  V  A  V  S  P  N  Q  N  I  A  Q  I  V  S  L  F  G  Y  S  M  W  N  L  F  S  G  F  M  I  P  R  P  :  S  M  P  I  W  W  R  W  Y  Y  W  A  D  P  V  A  W  T  L  Y  G  L  V  V  S  Q  F  G  D  L  Q  D  K  I  T  D  I  D  E  T  S  K  Q  F  L  R  R  Y  F  G  F  K  H  D  F  L  G  V  V  A  A  V  T  V  A  Y  A  V  V  F  A  F  T  F  G  L  A  I  K  F  F  N  F  Q  K  R  *  K  S  L  P  A  E  D  G  T  F  M  K  W  L  *  N  *  C  I  Q  V  T  T  *  T  S  I  Y  M  F  C  L  F  C  I  A  L  L  C  S  E  M  I  L  *  V  *  I  D  C </second_frame>
            <third_frame>   L  S  V  Q  Y  F  T  E  K  E  L  L  E  C  I  L  P  S  P  M  P  L  D  K :   L  S  L  K  Y  H  M  S  L  C  K  L  L  P  M  L  L  S  S  M  L  *  S  D  L  N  G  Q  *  A  N  S  F  G  T  C  L  S  C  I  S  L  S  C  I  S  P  S  M  V  *  *  V  L  P  F  P  Q  I  K  I  L  R  K  L  S  L  S  S  A  I  Q  C  G  I  F  S  Q  D  S  *  F  R  D  L :   V  C  P  Y  G  G  D  G  T  I  G  L  I  L  L  P  G  H  C  M  V  W  L  Y  R  N  S  E  T  S  K  I  K  L  L  I  *  M  R  H  P  N  N  S  *  G  V  T  L  G  S  S  M  I  F  L  E  *  L  Q  L  *  L  L  H  M  L  L  F  L  P  S  H  L  V  W  P  L  S  F  S  T  S  R  K  D  R  R  A  Y  L  L  K  M  E  H  S  *  N  G  Y  K  T  S  V  F  R  L  P  L  E  Q  V  Y  I  C  S  V  C  F  V  S  H  Y  Y  A  V  K  *  F  C  K  F  E  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104993" stop="104922"/>
                    <exon start="104851" stop="104597"/>
                    <exon start="104503" stop="104243"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERTVFYRERAAGMYSSLPYAFGQTFIEIPYVFVQAVTYAVIIYAMIGFEWTVSKFFWYLFIMYFTFLYFTFYGMMSVAVSPNQNIAQIVSLFGYSMWNLFSGFMIPRPSMPIWWRWYYWADPVAWTLYGLVVSQFGDLQDKITDIDETSKQFLRRYFGFKHDFLGVVAAVTVAYAVVFAFTFGLAIKFFNFQKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="109932" PGL_stop="106062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109932" e_stop="109548"/>
            <exon e_start="109026" e_stop="108906"/>
            <exon e_start="108817" e_stop="108644"/>
            <exon e_start="108501" e_stop="108342"/>
            <exon e_start="108000" e_stop="107924"/>
            <exon e_start="107862" e_stop="107809"/>
            <exon e_start="107712" e_stop="107320"/>
            <exon e_start="107237" e_stop="106956"/>
            <exon e_start="106859" e_stop="106543"/>
            <exon e_start="106447" e_stop="106287"/>
            <exon e_start="106202" e_stop="106062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.911" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="0.981"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.785" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.900" e_score="0.991"/>
          <exon-intron don_prob="0.358" acc_prob="0.889" e_score="0.975"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109932" e_stop="109548" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="109547" i_stop="109027" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="109026" e_stop="108906" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.992">
            <gDNA_intron_boundary i_start="108905" i_stop="108818" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108817" e_stop="108644" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108643" i_stop="108502" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="108501" e_stop="108342" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108341" i_stop="108001" i_length="341"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="108000" e_stop="107924" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="107923" i_stop="107863" i_length="61"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="107862" e_stop="107809" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="107808" i_stop="107713" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="107712" e_stop="107320" e_length="393"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107319" i_stop="107238" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107237" e_stop="106956" e_length="282"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.915">
            <gDNA_intron_boundary i_start="106955" i_stop="106860" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="106859" e_stop="106543" e_length="317"/>
          </exon>
          <intron i_serial="9" don_prob="0.635" acc_prob="0.900">
            <gDNA_intron_boundary i_start="106542" i_stop="106448" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="106447" e_stop="106287" e_length="161"/>
          </exon>
          <intron i_serial="10" don_prob="0.358" acc_prob="0.889">
            <gDNA_intron_boundary i_start="106286" i_stop="106203" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="106202" e_stop="106062" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109932" stop="109548"/>
              <exon start="109026" stop="108906"/>
              <exon start="108817" stop="108644"/>
              <exon start="108501" stop="108342"/>
              <exon start="108000" stop="107924"/>
              <exon start="107862" stop="107809"/>
              <exon start="107712" stop="107320"/>
              <exon start="107237" stop="106956"/>
              <exon start="106859" stop="106543"/>
              <exon start="106447" stop="106287"/>
              <exon start="106202" stop="106062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109932" stop="109548"/>
              <exon start="109026" stop="108906"/>
              <exon start="108817" stop="108644"/>
              <exon start="108501" stop="108394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109931" stop="109548"/>
              <exon start="109026" stop="108919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG : AGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG : GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG : GTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG : AGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG : GCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAG : CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAA : GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG : CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAG : ATTTTTCAAACAGTTTTTGCTACTCATATCACTAAACCAGATGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGGAGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGATTCGTTCTTTCACGAG : TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</gDNA_template>
            <first_frame> F  G  S  K  W  S  *  L  I  Q  E  V  L  V  *  E  K  K  *  S  G  E  V  V  *  E  G  A  *  V  E  R  G  I  V  L  I  T  P  G  G  M  A  M  M  G  R  F  L  I  V  Q  R  E  T  K  M  M  K  R  L  L  N  G  Q  L  L  K  S  F  Q  R  L  I  V  *  E  K  V  S  C  L  D  H  K  V  H  L  L  K  L  I  Y  M  I  L  V  F  K  K  E  T  S  C  L  K  G  L  S  K  L  Q  M  R  I  M  R  S  S  C  *  N  S  S  K  E  L  T   : E  L  G  *  I  C  Q  K  *  K  *  D  M  S  I  *  L  L  R  Q  M  H  M  *  E  V  E  L  C  L  H  L  S  T  L  S  L  I  F  L  R :   I  Y  *  T  L  S  I  S  Y  R  V  E  R  G  N  *  L  F  L  M  M  *  V  V  S  L  S  L  A  D  *  L  C  F  *  D  L  Q  V  P  G  K  L  H  Y  Y  *  L  W  P  E  S  S  T  L  P  L  R :   L  L  E  K  *  R  I  M  D  M  K  *  M  S  L  C  R  K  E  Q  R  L  I  L  A  S  M  I  Y  I  L  E  K  *  L  *  E  K  P  W  N  S  P  P  D  A  R  E  L  D  R  V  M  :  S  C  W  L  N  C  Q  E  E  R  K  Q  L  K  S  S  Q  I  L  I  L  I  F  S  *  R :   H  *  Q  Q  R  D  K  K  Q  F  L  L  Q  I  M  F  *  S :   F  W  G  W  I  F  V  Q  I  L  W  W  E  M  K  *  L  G  V  F  Q  E  D  K  R  S  V  *  Q  P  V  K  C  S  L  D  R  P  R  H  F  S  W  M  K  S  Q  L  D  W  I  V  L  L  L  T  Q  L  *  T  H  *  D  N  L  C  K  S  C  T  E  L  L  *  Y  L  S  C  S  Q  H  P  R  R  T  T  C  S  T  T  L  F  C  Y  Q  M  R  K  L  S  I  R  D  L  E  R  M  S  L  A  S  S  S  P  W  G  S  N  V  Q  I  E  K  A  W  P  T  S  C  K  K :   *  L  Q  R  K  I  N  S  N  I  G  *  G  G  M  K  L  T  G  L  S  L  Q  K  N  L  L  R  H  I  N  R  S  M  L  G  G  N  S  R  I  S  L  Q  L  H  M  T  R  A  K  A  I  L  L  L  C  Q  L  K  S  M  V  *  G  R  N  N  S  *  R  S  A  L  N  E  N  S  Y  *  *  R  G  T  H  L  F  T  S  S  S  S  F  S :   L  Q  L  W  H  S  Y  Q  *  L  S  F  S  V  L  R  C  R  V  I  Q  L  K  M  E  *  N  M  L  V  P  S  F  W  L  S  L  R  L  C  L  T  E  W  L  R  S  P  *  Q  F  T  N  F  L  S  S  T  S  K  G  T  F  S  F  T  L  H  G  L  M  Q  C  P  H  G  Y  S  K  C  L  *  H  L  L  K  L  D  F  G  C  S  S  L  T  M  S  *  D  L  I  R  A  L  Q   : D  F  S  N  S  F  C  Y  S  Y  H  *  T  R  W  H  Q  H  C  F  A  S  L  G  Q  L  E  G  P  W  E  L  L  I  H  L  E  H  L  F  C  F  C  S  L  H  W  V  D  S  F  F  H  E  :  L  M  *  R  N  G  G  Y  G  V  T  G  H  H  R  *  C  M  L  *  I  Q  F  L  *  M  N  L  M  E  K  S  G  N  K  L  H  Q  M  E  L  I  H  L  E  L  Q </first_frame>
            <second_frame>  L  V  Q  N  G  A  N  *  F  K  R  Y  *  F  K  R  K  N  N  Q  G  K  *  F  E  R  E  L  K  *  K  E  E  *  Y  *  *  L  Q  V  E  W  Q  *  W  G  D  F  *  S  F  N  E  R  R  R  *  *  R  G  S  *  M  G  S  S  *  K  A  S  N  V  *  S  F  E  K  R  S  L  V  W  I  T  R  C  I  C  *  N  *  Y  T  *  Y  W  F  S  R  K  K  Q  V  A  *  K  A  C  Q  S  C  R  *  G  *  *  E  A  P  V  E  T  Q  A  K  N  *  Q  :  S  W  D  R  F  A  R  N  R  S  K  I  *  A  F  N  Y  *  G  R  C  I  C  R  K  *  S  F  A  Y  I  Y  Q  L  Y  L  *  F  F  *   : G  Y  I  E  L  C  P  Y  P  T  E  S  K  E  E  T  N  Y  S  *  *  C  E  W  Y  H  *  A  S  Q  I  D  F  A  F  R  T  S  K  F  R  E  N  Y  I  I  I  S  F  G  R  K  A  R  L  C  P  *   : G  Y  W  K  S  D  V  *  W  T  *  N  E  *  V  C  A  A  K  N  S  G  L  Y  *  P  V  *  F  T  Y  W  R  N  D  C  E  R  N  L  G  I  L  R  Q  M  P  G  S  W  I  E  L  * :   A  V  G  *  T  V  K  K  R  E  S  S  *  N  Q  A  R  S  *  Y  *  Y  F  H  E   : G  I  S  N  R  G  T  R  S  S  F  C  Y  R  L  C  S  E   : A  F  G  A  G  Y  L  C  R  Y  Y  G  G  R  *  N  D  *  G  Y  F  R  R  T  K  E  A  C  D  N  R  *  N  A  R  W  T  V  Q  G  T  F  H  G  *  N  L  N  W  I  G  *  F  Y  Y  L  L  N  C  E  L  T  K  T  I  C  A  N  L  A  R  N  C  C  D  I  S  L  A  A  S  T  R  D  V  Q  L  V  R  R  H  Y  S  V  I  R  *  E  N  C  L  S  G  T  S  R  G  C  P  W  L  L  R  V  H  G  V  Q  M  S  R  *  K  R  R  G  R  L  L  A  R   : S  D  F  K  E  R  S  T  A  I  L  G  E  E  G  *  N  L  P  V  Y  H  F  K  R  I  C  *  G  T  S  I  V  P  C  W  E  E  T  R  G  *  A  C  S  F  I  *  Q  E  Q  K  P  S  C  C  F  V  N  S  K  V  W  Y  R  E  E  T  T  L  K  G  L  H  *  T  R  T  L  T  N  E  E  E  L  I  C  L  H  L  Q  V  H  S   : A  Y  N  C  G  T  H  I  N  D  S  L  F  P  Y  *  D  A  A  *  Y  N  *  R  W  S  K  I  C  W  C  P  L  F  G  C  H  S  D  Y  V  *  R  N  G  *  D  R  P  D  N  L  Q  T  S  C  L  L  Q  A  K  G  P  S  L  L  P  F  M  G  L  C  S  A  H  M  D  T  Q  N  A  Y  N  I  C  *  S  W  T  L  G  V  P  H  L  L  C  H  R  I  *  S  E  R  C  K  :  I  F  Q  T  V  F  A  T  H  I  T  K  P  D  G  I  S  I  V  S  L  H  W  G  S  W  K  D  H  G  S  C  *  Y  I  W  N  I  C  S  A  F  A  V  C  I  G  W  I  R  S  F  T  S :   *  C  E  E  M  V  V  M  G  L  L  V  I  T  D  D  V  C  Y  E  F  N  S  C  E  *  I  *  W  K  K  V  E  T  N  C  T  K  W  N  *  F  T  W  S  Y   </second_frame>
            <third_frame>   W  F  K  M  E  L  T  N  S  R  G  T  S  L  R  E  K  I  I  R  G  S  S  L  R  G  S  L  S  R  K  R  N  S  T  N  N  S  R  W  N  G  N  D  G  E  I  F  N  R  S  T  R  D  E  D  D  E  E  A  L  K  W  A  A  L  E  K  L  P  T  F  D  R  L  R  K  G  L  L  F  G  S  Q  G  A  S  A  E  I  D  I  H  D  I  G  F  Q  E  R  N  K  L  L  E  R  L  V  K  V  A  D  E  D  N  E  K  L  L  L  K  L  K  Q  R  I  D  R :   V  G  I  D  L  P  E  I  E  V  R  Y  E  H  L  T  I  E  A  D  A  Y  V  G  S  R  A  L  P  T  F  I  N  F  I  S  N  F  F  E  :  D  I  L  N  S  V  H  I  L  P  S  R  K  R  K  L  T  I  L  N  D  V  S  G  I  I  K  P  R  R  L  T  L  L  L  G  P  P  S  S  G  K  T  T  L  L  L  A  L  A  G  K  L  D  S  A  L  K  :  V  T  G  K  V  T  Y  N  G  H  E  M  N  E  F  V  P  Q  R  T  A  A  Y  I  S  Q  Y  D  L  H  I  G  E  M  T  V  R  E  T  L  E  F  S  A  R  C  Q  G  V  G  S  S  Y   : E  L  L  V  E  L  S  R  R  E  K  A  A  K  I  K  P  D  P  D  I  D  I  F  M  K  :  A  L  A  T  E  G  Q  E  A  V  F  V  T  D  Y  V  L  K  :  L  L  G  L  D  I  C  A  D  T  M  V  G  D  E  M  I  R  G  I  S  G  G  Q  K  K  R  V  T  T  G  E  M  L  V  G  P  S  K  A  L  F  M  D  E  I  S  T  G  L  D  S  S  T  T  Y  S  I  V  N  S  L  R  Q  S  V  Q  I  L  H  G  T  A  V  I  S  L  L  Q  P  A  P  E  T  Y  N  L  F  D  D  I  I  L  L  S  D  E  K  I  V  Y  Q  G  P  R  E  D  V  L  G  F  F  E  S  M  G  F  K  C  P  D  R  K  G  V  A  D  F  L  Q  E  :  V  T  S  K  K  D  Q  Q  Q  Y  W  V  R  R  D  E  T  Y  R  F  I  T  S  K  E  F  A  E  A  H  Q  S  F  H  V  G  R  K  L  A  D  K  L  A  A  S  Y  D  K  S  K  S  H  P  A  A  L  S  T  Q  K  Y  G  I  G  K  K  Q  L  L  K  V  C  T  E  R  E  L  L  L  M  K  R  N  S  F  V  Y  I  F  K  F  I  Q  :  L  T  I  V  A  L  I  S  M  T  L  F  F  R  T  K  M  P  R  D  T  I  E  D  G  V  K  Y  V  G  A  L  F  L  V  V  T  Q  I  M  F  N  G  M  A  E  I  A  L  T  I  Y  K  L  P  V  F  Y  K  Q  R  D  L  L  F  Y  P  S  W  A  Y  A  V  P  T  W  I  L  K  M  P  I  T  F  A  E  V  G  L  W  V  F  L  T  Y  Y  V  I  G  F  D  P  S  A  A  R :   F  F  K  Q  F  L  L  L  I  S  L  N  Q  M  A  S  A  L  F  R  F  I  G  A  A  G  R  T  M  G  V  A  N  T  F  G  T  F  V  L  L  L  Q  F  A  L  G  G  F  V  L  S  R   : V  D  V  K  K  W  W  L  W  G  Y  W  S  S  P  M  M  Y  A  M  N  S  I  L  V  N  E  F  D  G  K  K  W  K  Q  I  A  P  N  G  T  D  S  L  G  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109930" stop="109548"/>
                    <exon start="109026" stop="108906"/>
                    <exon start="108817" stop="108644"/>
                    <exon start="108501" stop="108342"/>
                    <exon start="108000" stop="107924"/>
                    <exon start="107862" stop="107809"/>
                    <exon start="107712" stop="107320"/>
                    <exon start="107237" stop="106956"/>
                    <exon start="106859" stop="106543"/>
                    <exon start="106447" stop="106287"/>
                    <exon start="106202" stop="106063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2262</number_coding_nucleotides>
                  <number_encoded_amino_acids>754</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFKMELTNSRGTSLREKIIRGSSLRGSLSRKRNSTNNSRWNGNDGEIFNRSTRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGASAEIDIHDIGFQERNKLLERLVKVADEDNEKLLLKLKQRIDRVGIDLPEIEVRYEHLTIEADAYVGSRALPTFINFISNFFEDILNSVHILPSRKRKLTILNDVSGIIKPRRLTLLLGPPSSGKTTLLLALAGKLDSALKVTGKVTYNGHEMNEFVPQRTAAYISQYDLHIGEMTVRETLEFSARCQGVGSSYELLVELSRREKAAKIKPDPDIDIFMKALATEGQEAVFVTDYVLKLLGLDICADTMVGDEMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILHGTAVISLLQPAPETYNLFDDIILLSDEKIVYQGPREDVLGFFESMGFKCPDRKGVADFLQEVTSKKDQQQYWVRRDETYRFITSKEFAEAHQSFHVGRKLADKLAASYDKSKSHPAALSTQKYGIGKKQLLKVCTERELLLMKRNSFVYIFKFIQLTIVALISMTLFFRTKMPRDTIEDGVKYVGALFLVVTQIMFNGMAEIALTIYKLPVFYKQRDLLFYPSWAYAVPTWILKMPITFAEVGLWVFLTYYVIGFDPSAARFFKQFLLLISLNQMASALFRFIGAAGRTMGVANTFGTFVLLLQFALGGFVLSRVDVKKWWLWGYWSSPMMYAMNSILVNEFDGKKWKQIAPNGTDSLGVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="117097" PGL_stop="114099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115210" e_stop="114099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="115210" e_stop="114099" e_length="1112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115210" stop="114494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115210" stop="114564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115210" stop="114595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115210" stop="114901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114590" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114571" stop="114099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114569" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114452" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114415" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</gDNA_template>
            <first_frame> K  E  V  S  L  V  F  I  H  L  *  F  I  V  L  P  L  L  *  M  V  K  L  A  V  N  *  S  L  *  S  F  R  S  F  N  K  E  L  V  *  V  *  *  P  *  I  I  R  F  L  M  L  V  Y  T  R  *  A  C  *  I  L  G  D  T  F  I  *  L  N  I  L  T  E  S  V  I  H  T  P  *  A  R  R  I  S  M  I  S  T  I  R  R  D  F  Q  L  G  I  F  I  Y  T  T  L  V  S  D  D  D  D  H  Q  F  H  R  I  L  *  *  R  Y  D  S  A  P  Q  M  I  S  S  Q  L  Q  K  P  *  Y  V  S  Y  T  N  S  I  K  H  S  A  N  T  Y  G  L  Y  I  K  F  F  I  I  L  S  L  L  L  C  W  S  I  L  V  T  M  Y  R  C  T  Y  F  E  C  L  L  *  R  C  S  F  S  S  S  N  S  A  G  L  *  L  I  T  W  *  S  A  F  P  K  D  S  R  R  N  F  N  W  *  G  L  D  I  V  Q  P  S  K  G  K  T  *  F  S  I  S  D  F  L  I  P  L  G  W  K  F  L  L  D  C  K  L  R  L  K  K  T  P  E  S  L  *  V  V  T  I  S  Q  R  S  V  N  L  Q  L  Q  L  E  N  G  D  L  Q  S  H  T  K  V  K  E  *  N  M  L  M  K  *  L  E  G  K  K  V  K  Q  A  R  R  S  K  S  W  Y  I  L  S  L  F  Y  C  I  F  L  R  A  I  L  K  L  G  S  F  C  K  *  L  D  K  F  F  I  L  W  I  P  L  N  I  R  V  T  Q  F  E  Y  C  M  *  S  G  F  P  Y  I  S  F  K  A  V  L  K   </first_frame>
            <second_frame>  R  K  C  P  L  F  L  S  T  Y  S  L  L  F  C  P  Y  F  K  W  S  N  *  P  L  T  S  R  C  R  V  L  G  A  L  I  K  N  *  F  R  Y  N  N  H  K  S  *  G  F  *  C  *  F  I  L  D  E  L  V  E  S  *  E  I  R  L  Y  D  *  I  S  L  Q  K  V  S  Y  T  R  L  K  L  E  E  Y  P  *  F  Q  Q  L  D  V  I  F  N  L  E  F  S  F  T  R  L  S  S  L  M  M  M  I  I  S  F  T  E  F  C  D  K  G  M  I  L  H  P  K  *  F  P  L  N  F  K  S  H  N  M  C  L  T  P  T  L  S  N  I  L  P  I  P  T  D  C  I  *  N  F  S  *  S  Y  H  C  C  Y  V  G  Q  F  *  *  Q  C  I  D  A  H  I  L  S  V  Y  S  E  D  V  L  F  L  H  Q  T  R  Q  D  S  N  *  *  H  G  S  R  R  F  Q  R  I  R  E  E  T  S  I  G  R  G  W  I  S  C  N  H  R  R  E  R  H  S  S  Q  S  R  I  F  S  S  R  *  D  G  S  S  C  W  T  A  S  *  G  *  R  K  H  Q  N  H  C  K  W  L  R  *  V  R  D  R  S  I  C  S  F  N  *  K  M  E  T  S  R  A  I  Q  R  *  R  S  E  I  C  *  *  N  S  *  K  E  R  R  *  S  R  Q  E  E  V  N  H  G  T  F  C  H  C  F  I  V  F  F  L  E  L  F  *  S  *  V  H  F  A  S  D  L  T  N  F  L  S  C  G  S  L  *  I  *  E  S  H  N  L  N  I  V  C  N  L  V  S  L  T  F  L  L  K  L  F  *  K  </second_frame>
            <third_frame>   G  S  V  P  C  F  Y  P  L  I  V  Y  C  F  A  L  T  L  N  G  Q  T  S  R  *  L  V  V  V  E  F  *  E  L  *  *  R  T  S  L  G  I  I  T  I  N  H  K  V  F  D  A  S  L  Y  *  M  S  L  L  N  P  R  R  Y  V  Y  M  I  E  Y  P  Y  R  K  C  H  T  H  A  L  S  *  K  N  I  H  D  F  N  N  *  T  *  F  S  T  W  N  F  H  L  H  D  S  R  L  *  *  *  *  S  S  V  S  Q  N  F  V  I  K  V  *  F  C  T  P  N  D  F  L  S  T  S  K  A  I  I  C  V  L  H  Q  L  Y  Q  T  F  C  Q  Y  L  R  T  V  Y  K  I  F  H  N  L  I  T  V  V  M  L  V  N  S  S  D  N  V  *  M  H  I  F  *  V  F  T  L  K  M  F  F  F  F  I  K  L  G  R  T  L  T  D  N  M  V  V  G  V  S  K  G  F  E  K  K  L  Q  L  V  G  V  G  Y  R  A  T  I  E  G  K  D  I  V  L  N  L  G  F  S  H  P  V  R  M  E  V  P  A  G  L  Q  V  K  V  E  E  N  T  R  I  T  V  S  G  Y  D  K  S  E  I  G  Q  F  A  A  S  I  R  K  W  R  P  P  E  P  Y  K  G  K  G  V  K  Y  A  D  E  I  V  R  R  K  E  G  K  A  G  K  K  K  *  I  M  V  H  F  V  I  V  L  L  Y  F  S  *  S  Y  F  E  V  R  F  I  L  Q  V  T  *  Q  I  F  Y  L  V  D  P  F  K  Y  K  S  H  T  I  *  I  L  Y  V  I  W  F  P  L  H  F  F  *  S  C  S  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114665" stop="114285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFTLKMFFFFIKLGRTLTDNMVVGVSKGFEKKLQLVGVGYRATIEGKDIVLNLGFSHPVRMEVPAGLQVKVEENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117097" e_stop="117012"/>
            <exon e_start="114621" e_stop="114099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117097" e_stop="117012" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.978">
            <gDNA_intron_boundary i_start="117011" i_stop="114622" i_length="2390"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="114621" e_stop="114099" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117097" stop="117012"/>
              <exon start="114621" stop="114180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117097" stop="117012"/>
              <exon start="114621" stop="114204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117097" stop="117012"/>
              <exon start="114621" stop="114233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117045" stop="117012"/>
              <exon start="114621" stop="114152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610766" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114590" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114571" stop="114099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114569" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114452" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114415" stop="114148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG : GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</gDNA_template>
            <first_frame> K  L  E  K  E  D  G  G  I  L  R  V  R  K  A  M  E  T  R  R  A  N  Q  M  H  G  L  F  R :   T  L  T  D  N  M  V  V  G  V  S  K  G  F  E  K  K  L  Q  L  V  G  V  G  Y  R  A  T  I  E  G  K  D  I  V  L  N  L  G  F  S  H  P  V  R  M  E  V  P  A  G  L  Q  V  K  V  E  E  N  T  R  I  T  V  S  G  Y  D  K  S  E  I  G  Q  F  A  A  S  I  R  K  W  R  P  P  E  P  Y  K  G  K  G  V  K  Y  A  D  E  I  V  R  R  K  E  G  K  A  G  K  K  K  *  I  M  V  H  F  V  I  V  L  L  Y  F  S  *  S  Y  F  E  V  R  F  I  L  Q  V  T  *  Q  I  F  Y  L  V  D  P  F  K  Y  K  S  H  T  I  *  I  L  Y  V  I  W  F  P  L  H  F  F  *  S  C  S  E  K </first_frame>
            <second_frame>  S  L  R  R  K  M  E  V  F  *  G  S  E  K  P  W  R  Q  D  A  L  I  R  C  M  V  Y  S   : G  L  *  L  I  T  W  *  S  A  F  P  K  D  S  R  R  N  F  N  W  *  G  L  D  I  V  Q  P  S  K  G  K  T  *  F  S  I  S  D  F  L  I  P  L  G  W  K  F  L  L  D  C  K  L  R  L  K  K  T  P  E  S  L  *  V  V  T  I  S  Q  R  S  V  N  L  Q  L  Q  L  E  N  G  D  L  Q  S  H  T  K  V  K  E  *  N  M  L  M  K  *  L  E  G  K  K  V  K  Q  A  R  R  S  K  S  W  Y  I  L  S  L  F  Y  C  I  F  L  R  A  I  L  K  L  G  S  F  C  K  *  L  D  K  F  F  I  L  W  I  P  L  N  I  R  V  T  Q  F  E  Y  C  M  *  S  G  F  P  Y  I  S  F  K  A  V  L  K   </second_frame>
            <third_frame>   A  *  E  G  R  W  R  Y  S  K  G  Q  K  S  H  G  D  K  T  R  *  S  D  A  W  F  I  Q  :  D  S  N  *  *  H  G  S  R  R  F  Q  R  I  R  E  E  T  S  I  G  R  G  W  I  S  C  N  H  R  R  E  R  H  S  S  Q  S  R  I  F  S  S  R  *  D  G  S  S  C  W  T  A  S  *  G  *  R  K  H  Q  N  H  C  K  W  L  R  *  V  R  D  R  S  I  C  S  F  N  *  K  M  E  T  S  R  A  I  Q  R  *  R  S  E  I  C  *  *  N  S  *  K  E  R  R  *  S  R  Q  E  E  V  N  H  G  T  F  C  H  C  F  I  V  F  F  L  E  L  F  *  S  *  V  H  F  A  S  D  L  T  N  F  L  S  C  G  S  L  *  I  *  E  S  H  N  L  N  I  V  C  N  L  V  S  L  T  F  L  L  K  L  F  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117097" stop="117012"/>
                    <exon start="114621" stop="114285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLEKEDGGILRVRKAMETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATIEGKDIVLNLGFSHPVRMEVPAGLQVKVEENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 507 chains have been computed
$ 
$ memory statistics:
$ 401768 bytes spliced alignments in total
$ 153 spliced alignments have been stored
$ 2625 bytes was the average size of a spliced alignment
$ 29136 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1821 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 568 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:25:08
-->
