<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:26:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8131" ref_strand="+" ref_description="SGN-M8131 C2_At3g63390 [cosii_markers]">
      <seq>aactctttctctctatcaatttgtagatgcatttactggtgatgatatcaattcagccttgagaaaactactttgagtatcctgatattggtttcgtctcttcaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgaatctcaagtcactcaacaatgtgaatctggagctaggattggttgctctatcgcagcctcagacaaatgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="22299" stop="24867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22599" g_stop="22624" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24111" g_stop="24567" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="483" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-M8131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22599" e_stop="22624"/>
          <exon e_start="24111" e_stop="24567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCTCTCTATCAATTTGTAGGTATGTTTATGGTTTGTTCGTTCATTTTTTAAAAAATATATTCTTCAACTTTTTATTTTTAAACTTAATTGGAATGGAATGTTCTGTTTGGATAGTGTTCTTTTGGTAAAATATATCTGTTTGATTGTTCACTCTATGTGCAAGTTTACATGTTTCTCGATTGAGATCTTTAAAGGAAATGAAGCAAACACTATTCCAATTCACAGTAAACAAGATTCATTGATTGTATTATTACTCTAATAAACTGAAATAAGGAATATAAGCATTACTATTATTTATTGATTGGAAGGATACAAGGATAAAGAAATTAGATTAGAAAGAAGATGAAAATCCCAAAACCTTTGTCACGTGCTTCCGTACTCAACCTGGATCCCAAGTAAGTCCCTAGTTCGAATAACTGGTCAATAAGAATTATGTGAGTTGTCCATGTCATTTATATACAAAAATTAAACTTGGAAAGGGATTTCTGAGATCCCCTGATGAAGATATCAGCGATGGGAATTCGGCAACAATTTTGTTGGGCGTGCAAACAAAGTGGTAGCTTAAAAAGACTGGAAAGCTACATATGAGGTGTGTGAGGCCTTTTGAAAAAAAACCATGTGGATTTGGCCAAAGCGGACAATATTACACCATGTTAAAAGCTTCATTCAGTTGATTTAGCCAACAAAACTTAAGGTGGCTATGGTTTTGATCTTCTTCCCTAACTGCATCTCCTTGACTCGTACTGCCAACACAGCTGCTTTTCCTTTTAGCTACATATACCACTCTTCATCATCTTTCCCTGCCTCACTGAATGTTGATCTGGTTGTTTTGCTTCTGTTTGTTTCTAAACTGAAGTCCTCTGAGTGAAGCGCTCAACAGTAATACATACCTCTATGCATAGAAATGATATAACATTCTGAAATGATTTAAAGATTACATGAAAATGCTTTTAATGCTTATTGTTTTTATTTATTGATCTTATGAAATGTAACACTTATCGTATATCATGAATTTTATGTATCCCTTAAAGTATCGTTCCAACCTTATCGAAAGGAGACAGCGATACTTAGGGGGGTACAATTTTTTATATTGTACCCAGCCCCTTCTTCCCGCGGGCATATACATATTATCAGTTTATTCAGTCCCCTGCAGTTTATGTCACTTGGCATGATTCCATGAAGTATGAGCCCCTTGTGTTGGGAGAACTTCTAGATACTCGTGATATAGACACTTTGTGGTGTTTGAATTTGGGATGTTTTCCAATGAAGTTTTTTCCAAAACAACTCTCATGTCTATTTCAAAAACCAAACTTGTTATTGGAAGACAATCCAAAAACGTTGATGGAGTACCAGTAGCAAAAAATTCTGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</genome_strand>
        <mrna_strand>AACTCTTTCTCTCTATCAATTTGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M334-R" ref_strand="+" ref_description="SGN-M334-R TG473-R [rflp_markers_reverse]">
      <seq>ggagacagcttgcatgcctgcagggtagagagaaaagatagaacctataaattaaaaatagggaaaaaaaaacataatatacttcttcaagtaataattcaacccatcaattatcaaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtttgtgttctaatttctcaaagattgaatctttatttgattgaatgtaaaaggtgtttctttttattggggatattactctttatggggttacagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88671" stop="89797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88977" g_stop="89497" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="544" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-M334-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M334-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88977" e_stop="89497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAGAGAAAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAG</genome_strand>
        <mrna_strand>GGTAGAGAGAAAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M297-R" ref_strand="+" ref_description="SGN-M297-R TG602-R [rflp_markers_reverse]">
      <seq>ggagacagcttgcatgcctgcagggtagagagaaagatagaacctataaattaaaaatagggaaaaaaaaacataatatacttcttcaagtaataattcaacccatcaattatcaaaaaaatgctttcctccctttctcacacctcttcttccaccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtttgtgttctaatttctcaaagattgaatctttatttgattgaatgtaaaaggtgtttctttttattggggatattactctttatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88671" stop="89788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88977" g_stop="89488" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="534" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-M297-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M297-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88977" e_stop="89488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAGAGAAAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGG</genome_strand>
        <mrna_strand>GGTAGAGAG-AAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M297-F" ref_strand="+" ref_description="SGN-M297-F TG602-F [rflp_markers_forward]">
      <seq>gtagagagaaagatagaacctataaattaaaaatagggaaaaaaaaacataatatacttcttcaagtaataattcaacccatcaattatcaaaaaaatgctttcctccctttctcacacctcttcttccgccaccgctttcttcctctcttcctccgccaaatttctccgacccagattctcttcttgtcctttccagttcccaattcatcaaaaacgacaccgttctctgttttctcatagcacagcagcttcaatggactcggctgccaccgttgattcagttgctgatgatttaaagaaacaaaacttaaaaggagttgaaattaagcttaaattgaatctcgaagagcttaattgggataactcttttgttcgtgaactacctggcgaccccagaagtgatagtattccaagagaggtttgtgttctaatttctcaaagattgaatctttatttgattgaatgtaaaaggtgtgtctttttattggggatattactctttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="+" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="88678" stop="89787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88978" g_stop="89487" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="+" ref_id="SGN-M297-F" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M297-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88978" e_stop="89487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGAGAAAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGG</genome_strand>
        <mrna_strand>GTAGAGAG-AAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCGCCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTGTCTTTTTATTGGGGATATTACTCTTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M334-F" ref_strand="+" ref_description="SGN-M334-F TG473-F [rflp_markers_forward]">
      <seq>aatcaagtccaaccttagatgttgtttcatgactaaaatttcaaagagaaattcgacaagcttcaagaaacttacgctcccaccaatggtgatgccccagagaaaataaggggaaaatcaggcctctcaaatctgaaaaattaaagtaagtctgacaatttcatcaagccacaattagcgtggccataacatcatcaagcttttaaaaactcactctctaggatccaattcaagtaactccgccactgattctgaccatgctacaagctgagggttattgaccggtacagagggtaacactttcgtgtagcaagcatgcaacacctacaaagacaatgtttgaacagatgatgacttgcaaaagaattctatcttcagttactgacatttcaaactcaatgcaaactgcattgcttatcacataggtaacaactatattccacattttttgcaatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-xvzSn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0004A15.3" temp_strand="-" temp_description="C12HBa0004A15.3  AC217494.3 htgs_phase:2 submitted_to_sgn_as:gi|239799563|gb|AC217494.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-4A15, WORKING DRAFT SEQUENCE, 6 ordered pieces">
        <position start="91348" stop="90289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91048" g_stop="90589" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.3" gen_strand="-" ref_id="SGN-M334-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M334-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91048" e_stop="90589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGTCCAACCTTAGATGTTGTTTCATGACTAAAATTTCAAAGAGAAATTCGACAAGCTTCAAGAAACTTACGCTCCCACCAATGGTGATGCCCCAGAGAAAATAAGGGGAAAATCAGGCCTCTCAAATCTGAAAAATTAAAGTAAGTCTGACAATTTCATCAAGCCACAATTAGCGTGGCCATAACATCATCAAGCTTTTAAAAACTCACTCTCTAGGATCCAATTCAAGTAACTCCGCCACTGATTCTGACCATGCTACAAGCTGAGGGTTATTGACCGGTACAGAGGGTAACACTTTCGTGTAGCAAGCATGCAACACCTACAAAGACAATGTTTGAACAGATGATGACTTGCAAAAGAATTCTATCTTCAGTTACTGACATTTCAAACTCAATGCAAACTGCATTGCTTATCACATAGGTAACAACTATATTCCACATTTTTTGCAATCAAGG</genome_strand>
        <mrna_strand>AATCAAGTCCAACCTTAGATGTTGTTTCATGACTAAAATTTCAAAGAGAAATTCGACAAGCTTCAAGAAACTTACGCTCCCACCAATGGTGATGCCCCAGAGAAAATAAGGGGAAAATCAGGCCTCTCAAATCTGAAAAATTAAAGTAAGTCTGACAATTTCATCAAGCCACAATTAGCGTGGCCATAACATCATCAAGCTTTTAAAAACTCACTCTCTAGGATCCAATTCAAGTAACTCCGCCACTGATTCTGACCATGCTACAAGCTGAGGGTTATTGACCGGTACAGAGGGTAACACTTTCGTGTAGCAAGCATGCAACACCTACAAAGACAATGTTTGAACAGATGATGACTTGCAAAAGAATTCTATCTTCAGTTACTGACATTTCAAACTCAATGCAAACTGCATTGCTTATCACATAGGTAACAACTATATTCCACATTTTTTGCAATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="22599" PGL_stop="24567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22599" e_stop="22624"/>
            <exon e_start="24111" e_stop="24567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22599" e_stop="22624" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.956">
            <gDNA_intron_boundary i_start="22625" i_stop="24110" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24111" e_stop="24567" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22599" stop="22624"/>
              <exon start="24111" stop="24567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCTTTCTCTCTATCAATTTGTAG : ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</gDNA_template>
            <first_frame> N  S  F  S  L  S  I  C  R :   C  I  Y  W  *  *  Y  Q  F  S  L  E  K  T  T  L  S  I  L  I  L  V  S  S  L  Q  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L  H  T  R  L  V  N  L  K  S  L  N  N  V  N  L  E  L  G  L  V  A  L  S  Q  P  Q  T  N  V  K </first_frame>
            <second_frame>  T  L  S  L  Y  Q  F  V   : D  A  F  T  G  D  D  I  N  S  A  L  R  K  L  L  *  V  S  *  Y  W  F  R  L  F  R  T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  I  Q  G  L  *  I  S  S  H  S  T  M  *  I  W  S  *  D  W  L  L  Y  R  S  L  R  Q  M  *   </second_frame>
            <third_frame>   L  F  L  S  I  N  L  *  :  M  H  L  L  V  M  I  S  I  Q  P  *  E  N  Y  F  E  Y  P  D  I  G  F  V  S  S  G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A  Y  K  A  C  E  S  Q  V  T  Q  Q  C  E  S  G  A  R  I  G  C  S  I  A  A  S  D  K  C  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24147" stop="24566"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENYFEYPDIGFVSSGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASAYKACESQVTQQCESGARIGCSIAASDKCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="88977" PGL_stop="89497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88977" e_stop="89497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88977" e_stop="89497" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88977" stop="89497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M334-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88977" stop="89488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M297-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88978" stop="89487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M297-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAGAGAGAAAAGATAGAACCTATAAATTAAAAATAGGGAAAAAAAAACATAATATACTTCTTCAAGTAATAATTCAACCCATCAATTATCAAAAAAATGCTTTCCTCCCTTTCTCACACCTCTTCTTCCACCACCGCTTTCTTCCTCTCTTCCTCCGCCAAATTTCTCCGACCCAGATTCTCTTCTTGTCCTTTCCAGTTCCCAATTCATCAAAAACGACACCGTTCTCTGTTTTCTCATAGCACAGCAGCTTCAATGGACTCGGCTGCCACCGTTGATTCAGTTGCTGATGATTTAAAGAAACAAAACTTAAAAGGAGTTGAAATTAAGCTTAAATTGAATCTCGAAGAGCTTAATTGGGATAACTCTTTTGTTCGTGAACTACCTGGCGACCCCAGAAGTGATAGTATTCCAAGAGAGGTTTGTGTTCTAATTTCTCAAAGATTGAATCTTTATTTGATTGAATGTAAAAGGTGTTTCTTTTTATTGGGGATATTACTCTTTATGGGGTTACAGTAG</gDNA_template>
            <first_frame> G  R  E  K  R  *  N  L  *  I  K  N  R  E  K  K  T  *  Y  T  S  S  S  N  N  S  T  H  Q  L  S  K  K  C  F  P  P  F  L  T  P  L  L  P  P  P  L  S  S  S  L  P  P  P  N  F  S  D  P  D  S  L  L  V  L  S  S  S  Q  F  I  K  N  D  T  V  L  C  F  L  I  A  Q  Q  L  Q  W  T  R  L  P  P  L  I  Q  L  L  M  I  *  R  N  K  T  *  K  E  L  K  L  S  L  N  *  I  S  K  S  L  I  G  I  T  L  L  F  V  N  Y  L  A  T  P  E  V  I  V  F  Q  E  R  F  V  F  *  F  L  K  D  *  I  F  I  *  L  N  V  K  G  V  S  F  Y  W  G  Y  Y  S  L  W  G  Y  S   </first_frame>
            <second_frame>  V  E  R  K  D  R  T  Y  K  L  K  I  G  K  K  K  H  N  I  L  L  Q  V  I  I  Q  P  I  N  Y  Q  K  N  A  F  L  P  F  S  H  L  F  F  H  H  R  F  L  P  L  F  L  R  Q  I  S  P  T  Q  I  L  F  L  S  F  P  V  P  N  S  S  K  T  T  P  F  S  V  F  S  *  H  S  S  F  N  G  L  G  C  H  R  *  F  S  C  *  *  F  K  E  T  K  L  K  R  S  *  N  *  A  *  I  E  S  R  R  A  *  L  G  *  L  F  C  S  *  T  T  W  R  P  Q  K  *  *  Y  S  K  R  G  L  C  S  N  F  S  K  I  E  S  L  F  D  *  M  *  K  V  F  L  F  I  G  D  I  T  L  Y  G  V  T  V  </second_frame>
            <third_frame>   *  R  E  K  I  E  P  I  N  *  K  *  G  K  K  N  I  I  Y  F  F  K  *  *  F  N  P  S  I  I  K  K  M  L  S  S  L  S  H  T  S  S  S  T  T  A  F  F  L  S  S  S  A  K  F  L  R  P  R  F  S  S  C  P  F  Q  F  P  I  H  Q  K  R  H  R  S  L  F  S  H  S  T  A  A  S  M  D  S  A  A  T  V  D  S  V  A  D  D  L  K  K  Q  N  L  K  G  V  E  I  K  L  K  L  N  L  E  E  L  N  W  D  N  S  F  V  R  E  L  P  G  D  P  R  S  D  S  I  P  R  E  V  C  V  L  I  S  Q  R  L  N  L  Y  L  I  E  C  K  R  C  F  F  L  L  G  I  L  L  F  M  G  L  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89051" stop="89497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNPSIIKKMLSSLSHTSSSTTAFFLSSSAKFLRPRFSSCPFQFPIHQKRHRSLFSHSTAASMDSAATVDSVADDLKKQNLKGVEIKLKLNLEELNWDNSFVRELPGDPRSDSIPREVCVLISQRLNLYLIECKRCFFLLGILLFMGLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="91048" PGL_stop="90589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91048" e_stop="90589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91048" e_stop="90589" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91048" stop="90589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M334-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAAGTCCAACCTTAGATGTTGTTTCATGACTAAAATTTCAAAGAGAAATTCGACAAGCTTCAAGAAACTTACGCTCCCACCAATGGTGATGCCCCAGAGAAAATAAGGGGAAAATCAGGCCTCTCAAATCTGAAAAATTAAAGTAAGTCTGACAATTTCATCAAGCCACAATTAGCGTGGCCATAACATCATCAAGCTTTTAAAAACTCACTCTCTAGGATCCAATTCAAGTAACTCCGCCACTGATTCTGACCATGCTACAAGCTGAGGGTTATTGACCGGTACAGAGGGTAACACTTTCGTGTAGCAAGCATGCAACACCTACAAAGACAATGTTTGAACAGATGATGACTTGCAAAAGAATTCTATCTTCAGTTACTGACATTTCAAACTCAATGCAAACTGCATTGCTTATCACATAGGTAACAACTATATTCCACATTTTTTGCAATCAAGG</gDNA_template>
            <first_frame> N  Q  V  Q  P  *  M  L  F  H  D  *  N  F  K  E  K  F  D  K  L  Q  E  T  Y  A  P  T  N  G  D  A  P  E  K  I  R  G  K  S  G  L  S  N  L  K  N  *  S  K  S  D  N  F  I  K  P  Q  L  A  W  P  *  H  H  Q  A  F  K  N  S  L  S  R  I  Q  F  K  *  L  R  H  *  F  *  P  C  Y  K  L  R  V  I  D  R  Y  R  G  *  H  F  R  V  A  S  M  Q  H  L  Q  R  Q  C  L  N  R  *  *  L  A  K  E  F  Y  L  Q  L  L  T  F  Q  T  Q  C  K  L  H  C  L  S  H  R  *  Q  L  Y  S  T  F  F  A  I  K  </first_frame>
            <second_frame>  I  K  S  N  L  R  C  C  F  M  T  K  I  S  K  R  N  S  T  S  F  K  K  L  T  L  P  P  M  V  M  P  Q  R  K  *  G  E  N  Q  A  S  Q  I  *  K  I  K  V  S  L  T  I  S  S  S  H  N  *  R  G  H  N  I  I  K  L  L  K  T  H  S  L  G  S  N  S  S  N  S  A  T  D  S  D  H  A  T  S  *  G  L  L  T  G  T  E  G  N  T  F  V  *  Q  A  C  N  T  Y  K  D  N  V  *  T  D  D  D  L  Q  K  N  S  I  F  S  Y  *  H  F  K  L  N  A  N  C  I  A  Y  H  I  G  N  N  Y  I  P  H  F  L  Q  S  R </second_frame>
            <third_frame>   S  S  P  T  L  D  V  V  S  *  L  K  F  Q  R  E  I  R  Q  A  S  R  N  L  R  S  H  Q  W  *  C  P  R  E  N  K  G  K  I  R  P  L  K  S  E  K  L  K  *  V  *  Q  F  H  Q  A  T  I  S  V  A  I  T  S  S  S  F  *  K  L  T  L  *  D  P  I  Q  V  T  P  P  L  I  L  T  M  L  Q  A  E  G  Y  *  P  V  Q  R  V  T  L  S  C  S  K  H  A  T  P  T  K  T  M  F  E  Q  M  M  T  C  K  R  I  L  S  S  V  T  D  I  S  N  S  M  Q  T  A  L  L  I  T  *  V  T  T  I  F  H  I  F  C  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 9416 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1883 bytes was the average size of a spliced alignment
$ 7912 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2637 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:26:09
-->
