<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 19:00:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-m5FPX/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-JmZDZL/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-JmZDZL/sgn_marker_seqs" ref_id="CT56-F" ref_strand="+" ref_description="CT56-F">
      <seq>ctttttttttttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-m5FPX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0245M17.1" temp_strand="+" temp_description="C11HBa0245M17.1  AC212439.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0245M17 sequenced_by:ivf-caas">
        <position start="48825" stop="49924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49120" g_stop="49624" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="506" r_length="502" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.1" gen_strand="+" ref_id="CT56-F" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.1" gen_strand="+"/>
        <rDNA rDNA_id="CT56-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49120" e_stop="49624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGA</genome_strand>
        <mrna_strand>TTTTTTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC---TTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-JmZDZL/sgn_marker_seqs" ref_id="CT56-R" ref_strand="-" ref_description="CT56-R">
      <seq>tgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-m5FPX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0245M17.1" temp_strand="+" temp_description="C11HBa0245M17.1  AC212439.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0245M17 sequenced_by:ivf-caas">
        <position start="48876" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49176" g_stop="49679" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="515"/>
      <MATCH_line gen_id="C11HBa0245M17.1" gen_strand="+" ref_id="CT56-R" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.1" gen_strand="+"/>
        <rDNA rDNA_id="CT56-R" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49176" e_stop="49679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>TGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC---TTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-JmZDZL/sgn_marker_seqs" ref_id="CT55-R" ref_strand="-" ref_description="CT55-R">
      <seq>taccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-m5FPX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0245M17.1" temp_strand="+" temp_description="C11HBa0245M17.1  AC212439.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0245M17 sequenced_by:ivf-caas">
        <position start="48883" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49183" g_stop="49679" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="508"/>
      <MATCH_line gen_id="C11HBa0245M17.1" gen_strand="+" ref_id="CT55-R" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.1" gen_strand="+"/>
        <rDNA rDNA_id="CT55-R" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49183" e_stop="49679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>TACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC---TTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="49120" PGL_stop="49679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49120" e_stop="49679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="49120" e_stop="49679" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49120" stop="49624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT56-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49176" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT56-R" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49183" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT55-R" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</gDNA_template>
            <first_frame> D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H  T  R  F  P  C  *  R  V  I  T  V  L  F  G  R  T  L  F  Q  L  Q  S  L  Q  I  L  N  E  S  F  D  K  I   </first_frame>
            <second_frame>  I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  L  V  S  L  V  E  G  L  L  L  F  C  L  G  G  P  Y  F  N  C  R  A  Y  R  F  *  M  N  L  L  I  K  S  </second_frame>
            <third_frame>   *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  H  S  F  P  L  L  K  G  Y  Y  C  F  V  W  A  D  L  I  S  I  A  E  L  T  D  S  E  *  I  F  *  *  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49120" stop="49416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49440" stop="49661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDGDENLFGVTFEYSVGETIIIIPFAFFFCNNSKNLRVGQSLKTPHSFPLLKGYYCFVWADLISIAELTDSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 3 chains have been computed
$ 
$ memory statistics:
$ 4584 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1528 bytes was the average size of a spliced alignment
$ 5528 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 19:00:24
-->
