<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-07 22:26:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345003" ref_strand="+" ref_description="SGN-U345003        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein, similar to SP:P36607 DNA repair protein rad8 {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00646: F-box domain | chr3:20172939-20178246 REVERSE | Aliases: None(evalue: 2e-46, score=182) genbank/nr: gi|22331785|ref|NP_680129.1| SNF2 domain/helicase domain/F-box domain-containing protein [Arabidopsis thaliana] gi|11358775|pir||T47605 RING finger-like protein - Arabidopsis thaliana gi|7258349|emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana] gi|20259494|gb|AAM13867.1| unknown protein [Arabidopsis thaliana] gi|28393845|gb|AAO42330.1| unknown protein [Arabidopsis thaliana](evalue: 2e-44, score=182)">
      <seq>tgacagtttcgaaaccctaacttctccatgaattcttagctccgaagcttcaaattcagcgatggagggtgattattcaatcccagaccacaagctatgtggtttctttcttacagccgttgaaatttcgtctccgccgcactcctccgagctccatagcaccctccctttaaattcacagtgctacatcgccggagacggttctaatatccactttgtaacggataacgacgttgaattgtgtcccattggttctcatacggaagaggaccggaatgatgttgttccgatgaagaagcggagcagaattggaatggtgaatggtagtataagcgtggtgcatcagttgcacaaacttgtaatgcaaaaatgcttgaagattgttgctagggttcttgaggttgtggagcgtggccatgatgaagaagttagggctgttgttcttgtggatgtgtacttgcctttagctttgtggtccggttggcagttccccaagtctggccctgttgctgcagcacttttccggcatatcagttgtgactgggatgcttggagttctatgcttcagtctgctaaacttggtgttgaaaaggattttagtatttggaatctgtccgactgtcatgttctaggatgcaaactgcattgcagtgcatctgacccttnncaagaaaagctctttgagctccatgaaattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="15886" stop="18245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16186" g_stop="16719" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17779" g_stop="17945" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="701" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U345003" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16186" e_stop="16719"/>
          <exon e_start="17779" e_stop="17945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAGGTAGTGATATCAAGTATAAATTGTTAAAAGTTCGAAAATATGAACTGAAAAAAATGAATTTGATTGGGATCTTAGAAAAAGTTAAAATCAATAAGAATGCAGTTAACCCCTGTAATCCATGAAAGTCTGTTAATTACTTTTTATCAATAATTGCTCGAGCATTCTGTGTGCTTACCTGACACTGGGACTGCTCAGCTTAGTAGTCCAGGTGCTGTGCAAGTGTGCAAGCTCTGAAAACACTAAATCCATTTCATATTTGTATATTGAGATTTTATGAATATTACCTACTTAGATTGTGATTATTCTATGTTTTTATCTTAACCAGCATACATTTGTGAAATCAATTAGTACAACCAACCTGTAGTGGTGGCAATGGTGGGAGAAATCAAGTATAGAATGGAAATAGTCGTGGTGCATCAAGTTAGGCAGGACACTAAAGTTATATTCTATGTATGTTTAGTATAGTGGAAGGAACTGTCCAGCTCTCTTGCTAGTCAAGCTACTGATAAGATCATTTTAGTAATTAGTGAACAATGATGGATGATTAATTTAGGGATGCCAATGACTCAATAGGAGCAACATTGTATTAGAATCGGGGTTGTAGATTAATAGTATATTAAGTGCTAAAAGTTTTTCTTCCCCTTTTCTGTTTGGGTGATAATTATTCTGACAAAACAAAGAGACAAAACTTTCCTTTGCATCTCTCCTTTGATTTAGTTGAAGTCATTGTGACATGAATATGCCATAAATTTTTTAGAAAGTGCAATTCCAATGAAGATGGAATCAGATATTCTTCTATGGAGTTTAGGTTGTCGAATTAGCAGTTGAAATAAATATTAATTATCTAATATAATAACACCATCACACCAAGTGACCTGATGAGCAGTTCTTGAATCTATAAAGTATTAACAGTGGTTCGTAGAATTTCTAGTTGAGTTGGAGCTTTAGAAAATTGTGTTGCATTTAATTGTCTATGCAGCTAATGCTGATTTATGTCCTAAATATTTAATGCAGCTGTGCAGCTGATTCTAATGAAATGTCCCTAATTTTTCTTTGCAGTTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</genome_strand>
        <mrna_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTNNCAAGAAAAGCTCTTTGAGCTCCATGAAATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323559" ref_strand="+" ref_description="SGN-U323559        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT1G49210.1 | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:18205626-18206339 FORWARD | Aliases: F27J15.3, F27J15_3 (evalue: 2e-32, score=136) genbank/nr: Zinc(evalue: 7e-33, score=144)">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttatcaagtgtatatacaagttaaggtgtatattttccctaaagtttaaagttatggtataagttcctatcttagggtaaattggattttgtattttaaattaaattaagcgggacccgctaatcaatctaactttgaaattggaaaaaaaaatgggaataattgtagatgatgggttgatgattaggaataaagtgctatcaatttattttatttttataaaaggaataaagtagaatggtagatgttgaatattttatttttggatggttaaattttttatgaggttaaaagtgtatatttttatgaataacaagaattgtttttcaaaagataaaaaaggaaccttttccccgaaaggattttaaagaaatataagtacttaaaaacattttttgtattttgaaaatttattaattaaacgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="28188" stop="26544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="26838" g_length="1051"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1051" r_length="1051" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U323559" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1051</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="26838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAATTATTT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341796" ref_strand="+" ref_description="SGN-U341796        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atctctcaacaatttctatcatatatcatatttttattttattttcaggattgattgctttctatcgctcaccttcgtatcattctccttaatattatatcttttggttttgtaggccacttacaatctttttttctttttagtttatgttcgttttatgagagattttcatttctacacatacgagatttgaaaagactaggtggtcaaaaaatcttcatatttctacgcatacaaaagatctgaaaagaccatatggtcaaaatatcataatttcaacctatacgagatttgaatataccaagtggtcaagagatgttcatttctacccatacgagatcggcggtcaagatatcttaattccctattggtataatattgttaatagtaaagagagaatttttattttatgatggatcatcacagggacaatgaatttgaatatcaagaaatcgagaaaacaaagacatcatcaaaattcaatagatcaaggactatacacagcccgagaaactcgattgaattccccgaaaagcccttgtatctctacccttctcctcattccatcgaacgtaatggctccattaaaaagcttcattgctcacctttaggatccatggttggaaaagtgaaaaagctgtattcaattttcgattctcgtaaagaaatcctcgatcctcgattccaaaactcaaagcagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="32668" stop="31361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32368" g_stop="31661" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U341796" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32368" e_stop="31661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</genome_strand>
        <mrna_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAG-AAATCCTCGATCCTCGATTCCAAAA-CTCAAAGC-AGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328206" ref_strand="+" ref_description="SGN-U328206        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgatcatttccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactctgtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="35678" stop="34539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35378" g_stop="34839" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U328206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35378" e_stop="34839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324739" ref_strand="+" ref_description="SGN-U324739        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>aaaattaggaggaacaaattattggccacaaaggaaggggatactagtagagtagatgctggacctattgcccagtcggtgcatatccaagaaaagattgtagttgatcattcttcaacttcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggagcagatgcggtgccaaaaaagaaagtgaagaggaaacatgagtcagaattgggtgaaagtttgtttcacagcgagaaattgacttccacacaggcagaggagaagaacaaaaccaacaagcatactggttgtcctactccaaaaccaaataatgtttcgacctccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctcttccttggttcattctgttaccagctaaaattcggtcgtcatcgaactttttagtatttttctgggttggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="41743" stop="40391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41443" g_stop="40682" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U324739" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41443" e_stop="40682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAATGCAGGATT</genome_strand>
        <mrna_strand>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343753" ref_strand="+" ref_description="SGN-U343753        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | wound-responsive family protein, similar to wound-responsive protein 14.05 (GI:16506638) (Castanea sativa); ESTs gb T42839 and gb:AA395192 come from this gene | chr1:7573940-7578945 FORWARD | Aliases: F24J8.24(evalue: 9e-27, score=117) genbank/nr: gi|22329715|ref|NP_173580.2| expressed protein [Arabidopsis thaliana] gi|19699100|gb|AAL90916.1| At1g21610/F24J8_11 [Arabidopsis thaliana] gi|21928029|gb|AAM78043.1| At1g21610/F24J8_11 [Arabidopsis thaliana](evalue: 6e-25, score=117)">
      <seq>ttctgaaataccaacaacaaagaaagctgcagatacccaagatatgtcggagcgatctccatcagcatcattgcgtggcaattctgcagaagaaaaagaccttgaccagcagaaaattggagtcacccaatccaagaatctaggtgacaaattaaaagatggttctgaaatatctggaaaatcatctcagaggttacatgacagaagttcttatgctcaagagaaatctaatgttggaagatcagtaaatatttctgacggaatagaccagtctgttcagcgccgtgatgagaagtttaatgtcagtggctttgagggaaagaactcaggtcagactatgaaagatcctgctatgcagagaaaggaaggatcgagtggtagaccaaaaggtacaatgcttgagaaggccatcagggatttggagaagatcgttgcagaattaaggccaccaaatatggaggttcaggatgctgataattcatctcaggctatcaaaaggaggttaccacttgaaataaagcagaggctggcaaaagttgcccgactggcgcaagctagtcatggaaaaatatccaatgagttaattagtcgtttaatgagtattgtcggccacttgatacaagcttcgcacattgaagcggaacttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="47510" stop="44322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47210" g_stop="46871" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46870" i_stop="45201" i_length="1670">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45200" g_stop="45101" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="440" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45100" i_stop="44935" i_length="166">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44934" g_stop="44825" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="44715" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44714" g_stop="44628" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="638" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U343753" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47210" e_stop="46871"/>
          <exon e_start="45200" e_stop="45101"/>
          <exon e_start="44934" e_stop="44825"/>
          <exon e_start="44714" e_stop="44628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATGGTGAGTTGTTTACTGTCCTCTCCCTGCGATAGTGCGTTTCTTTGCTATCTTATAAATGCTTGATGTCATGAATCATTTCTCTATGGTATTTTTTTTATAACCGTGGTGTCCGGCCAACTTGCCTGCACCTCAGACCTTCACCTGAGATCTCATGGTTCTCAGCCCTCCTAATTGACCACTAGGCCACACCCATGGGTGCCATTTCTTCGTTGTATTTATAGATTGATTTCTAATGATTGCTTGAGAACATTGCTGAAGGAAATTTTTTTCTAGTAGATCATCGTTCAATGTAGGGATAGCACTTATTAATGATCAGGTGAAGCTTTTGAAATGTTTACAGCAAAGTAGAGCTGCACCTATCATGAGCCAAATAATGTCAATAGATGCTAGGAAAAACATGCTGCCATGAAATCTTTGGGTCTCTTCTGGTGTTATTCCTTCATGGTCTCTACTAATCATTCCAAATCAAACCAGTTTCCTCTAAAAAGGTACTCCCACCGTCCCAATTTATGTGACAGCAAGTGAGGATAACAGATAAAGAATCAGTAGAAACCTTGAGATTGATAAAAAGAGAAGAAATTAATCTCTTTAGCCAGTCCCCAAGAGAATGACATCTTTCTAATTTAGTAACAGTTTGACATTGAACTTTTCAGTTTACCCTACGTGAGATTTTTATAGCCACATAATCTATGACTTATTTTCGATTACAAGTTTCAAAAGTTCTTCTCATTCTGAAACTTCGTGCTTGGCCAAACACCTTTGCTTTAAATTGGGGAGTACTAAATAGGTCTTAACCTTAACTAGCAAAAATCAAATGTAATTGATGAGAATATTGACGTTAGACTTAACTCAAACCCAAAAGCTAAAGGTGAGGATTGTCCGTACTACAATTATACCCTTAACAAATACAAGATTCTACATCCTTGCAGACCTATGACTTGGAGTATGGATAACACTATGTTGGGGCTTAGCATTAGATATAACAATATGAGGGATGGGTTTGACTTTGTTTACATGATAAAAGCATGGACCTAGTCTGCTCTAACAACTTAAAACATTTAAATGTGATGGTCACATAATTCAACACTGTATTGGATAAAACAGTAAGTTGGTTCTGATTGCCATCCGTTATCAAAAAGAACTTTTTTTTGTGCTTTGACATTATGATTAACATATATATTAATCAATATGACCTTCTAATGGTCTGGTAAGTCCTTCTCCCCCTACTCTGTCAGTTTTTCCTGTGGCTACTGGCAACCATTAAATTTGCAGTTAAAATGAAAACATGCATACATAACGATCAATCCCCTGTAAACTCCCCGGACAACTTTTTGAATTTTGTTAGCTCCTTATCTTTAGTATATGGCTCACGGTAATGGTGCTGACCTGTTCACTTTTGATCTCACTCTTTGTGTACTATGTTCATCTTCTTGATGTCTTTAATGAAATCTATTACTTCATCAAAAACAATCAAGAAGAGCTCTAGGTCTAGAAGTCCTTTCCTCTCCATTCAGTTGTTTGCCTTGAATCTCAGATCTGACCACTTGACCCTGCACCATACAACATTCAGAGACACACGTATGGTGCAGGGTTATGCAGTCATCTGAGATTCCTAATAAGCTTTTGTTCTTGCTGTAACTGACGCTCAGGTGCTCCCTAAAACTATACAGAAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAATGTATGCCCAAAACTTTTGACATATGTTTTTCTAACCGATAATTCATTTTCTTATGCATTGGTCGTCTATTTAATTTTTGAAAATATCACAGTAAGGCCGAGGTTCAGATGTCGTTTCTATTTGATAATAACTAATTTTTTTTACATTCAATCTCAAATTATCACAGTAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCGGTATAGACTAAGCTATATGGTCTAATTAGTTGTTATCTTTTTGGTTGATGTATTTACTTATATTCCATAGCGTACTTATCGAAGTCAAATATTTCTGTTGATGGTTGCAGCAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATAC-AGCTTCGCACATTGAAG</genome_strand>
        <mrna_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCGATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT......................................................................................................................................................................TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG..............................................................................................................CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAAGCTTCGCACATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327848" ref_strand="+" ref_description="SGN-U327848        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | wound-responsive family protein, similar to wound-responsive protein 14.05 (GI:16506638) (Castanea sativa); ESTs gb T42839 and gb:AA395192 come from this gene | chr1:7573940-7578945 FORWARD | Aliases: None(evalue: 2e-39, score=159) genbank/nr: gi|42571579|ref|NP_973880.1| wound-responsive family protein [Arabidopsis thaliana] (evalue: 1e-37, score=159)">
      <seq>ttcaattctaaaattttctcttttcaatttggtaccaaattttcctcttctttagggtttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattagctccgggacaacctgctgataaggaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaagattgaacgcttatatgtgggcaaacaaagtgatgatgaggaagatcttaatgatttcccagatgacgatgaatatgacactgaagattctttcatagatgatactgagctggatgaatattttcaggttgataactcagcaataaagcatgatggtttctttgtcaatcgtggaaagttggagcgcattgagccagtttcaccaaagaatcagcaaccaaaaaagaggagaagaaaagatctggcaaaaagccatgttggggatgatgatggacacaatccaagtaaacctgntaaagtcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="54983" stop="47020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54683" g_stop="54283" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50509" g_stop="50423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="488" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50344" g_stop="50252" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="581" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50251" i_stop="50092" i_length="160">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50091" g_stop="50015" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="658" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50014" i_stop="47436" i_length="2579">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47435" g_stop="47320" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="774" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U327848" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54683" e_stop="54283"/>
          <exon e_start="50509" e_stop="50423"/>
          <exon e_start="50344" e_stop="50252"/>
          <exon e_start="50091" e_stop="50015"/>
          <exon e_start="47435" e_stop="47320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTGGTCGGTCACATCAAGTTCCTTAACCTTATATACCTTATACAAATATGTGTTATTTTGTATCCGAATGATTTACAAGCATAGTCAATATTTTGCAACTTTGTGCAGGCGGCATCTATATGTTGTAGTCAAAGTACTTAGTACATTGTTTCTGGTTATGCAGGATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCATGTGAGTTTTTTCTTGAGATTTTTAAATAATATGACATGTCTAAACACCACTGTATATAATTTAACCAATTGTTCACCCTTTATCCGGCATCCAAATTTAGTTTTTGTATCTATTTTAAAGTTTTAAATTAGTTTAAAAACAATGTTTGTTTTGATTGTTACCTTTTTTTTGGTATCATATCGTTTCAATCCATTGTTAAGTAATGATGAAAAGTCTCATTATGAACTTTACCTTACTCAAAAAAAGAAGAAGAGAAGTTTCAGTATATGTAACAATTGATTTGGTTTGATCTCATCATTACCTTAATATTTCTTTTCATTTTGTCTTTCTTTATTATTTATTAATCTTATTTTATCTTTTACATTACCTTTTCATTTTAGCTCCGTCTCTTATCCTACTTTCCTTGTGGGTTTATCATTCAAATTGCCGACGTGTGACATTATGTTACGACGGAGAATGATATAATCTATCCAAACATCACGTTATAATACAACACAACGTAGTACATACGTCATAAAACAATACGTGACAAAATTACTCCGCAATTTCATGTTTCAAGTGATTGGATGATTATGCTACATGTGCTTGTGCAACCGAGGATCTATCAGTTACATGTTTCTTCGTTGCACTGTTGCCACCGACCTTTGGAACATGCTCTTTTCTCTCTTTGCTAACATAAAGCGAGGCGAAGCGCTTAATAGGTTTCAAGCCTCACATCAGGGCTTGTTATGACCCACATATACTCTTACGTTTTACCATAAGAAGTAGTTTTTTATTCTCTCCCCAATTCAAGTTCACCCCCAAATCTGGTAATCCCTGCAAGTATTGATGGTTCCTCTTTTACGTGATGTTCAATATTCTCTTAATGTTGCTTTCTTCTTATTCTTCTTGGATTTAATCCGACTCTTCTCTTCTTCTTTATTTCTTGTTTACTCCTTCCCTGGTTTCTTCTCCTCATGTACGACTCTTTTTCTTTTGCCACTTTTACTTTTGGGGTTCTTTTTTACTCTTCTCTCTCATTCTGTCAAAATAATTCCGTTCCAATTTTTCTTGTTTGTTCTATCTATTTCTTGTTTATATTTTGAATTTTTTATTCATCATGTTCTAGTAATGTTTAATTAGGAAAGGGAATCATTTTTTAAGAAGGTAAGTAGGTTTATATTGCAAAAGAGAAACTTGCCAGCATCAAGTTGGTGCTAATAGGATAAAAAACCCACCCGCTTGCACGGAATCAATGAAATCTAACATACTATCTTCATTCTTTATAATCTACACCAAAATGCTAAAAGCCGTAAACAAAAGTGGAGCCAGGTTTTGATGTTTATGGATTCGGATAGGGGTGTTAAATGAGCAGGTCGAGTCAGATATGGGCTGGTTGAAAATGAATTGGGTGAAAACGAATAATTTATCCAGCCTACCTATTATCAATATTCAATATATATTTTTAAAAAGGTAACAAGTCCTAGCCAACTTCTTTCTGAAAATATGATTTTGGAAATGATAGTCTCCTTTTGTTTTAGAGAGGAATTGTCTTTTGCAACAAAGGAAAAAATGATGCAGAGTGGGTTTAGGGAGGAAATGTCTTATCTTCTTTAAAAGGAGAGTAAAACATATTACCTGTAAAGGAGAAGACTTTGGGAGCAAGTGGGTTTCGAACCCACATATCTGCAATACAAAGCTTTACTACCCTAATCCATATATATATATATAATTTTTTATACTAACGCTTGTACTATAGGGTCCACGCAAAAACTATTGGGTTCGTCCAAACCCGCATAATGTACTGTAGCTCTCCTGGCCATAAACAATTGAAGTTAAGTTGTTGTACACTAATTGACTTTCCTTTCAAAACATAGTTAATTTCTTTCCTTGTGTGAGGAGATTAGGTTCTTGCAATATTGGAAATGTTTGCTTTTGTCTAATCCTGTTATTAAAGGTTTGGTTAAGCCCCGAAGCAAGGTCCACAACGTGTTGAGCACTTTACCTTGCTTAATTTGCTCCTTAGAGTTGTCATAAGGTTCTAAAACATACTTTTCCTTTCCAATGAACCTCTTTCTAGAGACAACACTAAACAGTTGATATTTCACTTTATCGTAATTATTATTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAAATTATTAGTTTTGGACTAAACATATATATATTTGGACTTTTTCTCCCTTGGTGCCTTTTTTCATTGAAGTTCATACTTTATTTGCGTTTTGCGCTTAAGCCCCAACAGACCTTGGAGTTTTTTTTATGCTATTTACTTTTTCTATGGTTTAAACCTCTGCATCTCTTTCCCTAAGAAATTCTCTTTCCTTGTTCAGTAAGTTATGTTTTCCCTTTGATTTTGGAATTCAGATGTATATTTCTTTTGGGACTTTGGTTTAGCTTCTTTTTCTCCATACGGATGTCCTTGTTCTTTCCCTGGTGATAGGTTGTTCATAACACTAGTGAATTTGTAATTATGGCTGCAAAATGGGAAGGATTTATTTGCTAATTTTTCTTAGAAATGAAAACTGGTACTTTCATTTGGGCACTTCTAACTGACATGATTTTCTTTTAGTGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</genome_strand>
        <mrna_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG..............................................................................GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG................................................................................................................................................................GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGNTAAAGTCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333252" ref_strand="+" ref_description="SGN-U333252        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G02650.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:566278-570110 FORWARD | Aliases: F16B3.28, F16B3_28 (evalue: 7e-45, score=176) genbank/nr: gi|34907634|ref|NP_915164.1| P0674H09.16 [Oryza sativa (japonica cultivar-group)] gi|19386688|dbj|BAB86070.1| P0506A10.3 [Oryza sativa (japonica cultivar-group)] gi|22093597|dbj|BAC06893.1| P0674H09.16 [Oryza sativa (japonica cultivar-group)](evalue: 8e-46, score=186)">
      <seq>ggaaaggctgcatttgagatcttcaataagtttggggatttaggatgtgcaccaaatgctgatacatactattttaccattgaagcactttctaggcgatcgatttatgattgggcttctactgtttgtgagaagatgcttaatgctgataagttgcctggtgctgagaaagttggaaagattgtttcttttctgtgtaaaggaaataagtgtagagatgcacatctggtttatttgtcggcaaaggagaaaaatattaatctgcctgtatcttctattaagttgttgatcagctctctttgtcgcaaagatgaaggcgttaaacttgcaatggaggtgttggatgagttccccaaagaagagcggaagcatgccattaagtcattctcacatgtcatcaatgggctgtgtagggcaaatgatgtaacaggggaaaagcagctgcgttcctattgcagtgaagacattgacgaggccaaaaacttgctcttaaaaatgatagatgcaggtccaccacctggcaatgcagtctttaatacagttattaatgcgctctccaagaagggagaaatgggagaagctaggaaactattgaaggtgatggagggtagaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="56853" stop="58067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57153" g_stop="57767" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U333252" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57153" e_stop="57767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTATGAAACTATTGAAAGTGATGGAGGGTAGAGGT</genome_strand>
        <mrna_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTAGGAAACTATTGAAGGTGATGGAGGGTAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341304" ref_strand="-" ref_description="SGN-U341304        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G02650.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:566278-570110 FORWARD | Aliases: F16B3.28, F16B3_28 (evalue: 4e-59, score=224) genbank/nr: gi|15232945|ref|NP_186914.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|6957728|gb|AAF32472.1| hypothetical protein [Arabidopsis thaliana](evalue: 3e-57, score=224)">
      <seq>ggtgatggagggtagaggtttgaaacctgatgtgtacacttatagtgtaatcatgagtggttatacaaagggaggtgagatggaggaggcctgcaagattttgaatgaagccaaaaagaagcactcctgtctaagtcccgtcacttttcacacaattattcggggctatttcaagctcgaacagtatgacaaggctctggaactattgggagatatgaaggagtatggagttcagcctaatgcggatgaatataacaaatttattcaatctctatgccttaaggctttagattggacaacagcagagaaactgcttgaggagatgaaggagaatggggtgcatctaaatgcaatcacaaagggtctcataagagcagttaaggagttagaacaggaagaagtaggaacaaatgaaataacggctacagcatagtaggtaccctatctctgcctttagctgtagggatgtatcttctgtttcttttttatgttatggtctgagataatagcaggcttaaaactgtaacacctgcattttgtatgatgaacaaccattagaattcttaagaaaggatattttttttgttcattttaaaataatgtttgctgccaaatctcttgagttgaatggaagttccgtaactaagactttcaaaagggaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="57450" stop="58716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57749" g_stop="58407" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="675"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U341304" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57749" e_stop="58407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGT-GTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</genome_strand>
        <mrna_strand>GGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334146" ref_strand="-" ref_description="SGN-U334146        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | leucine-rich repeat family protein / extensin family protein, similar to extensin-like protein (Lycopersicon esculentum) gi:5917664:gb:AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 | chr1:23115483-23118958 FORWARD | Aliases: F24O1.19(evalue: 1e-137, score=487) genbank/nr: gi|5454187|gb|AAD43602.1| T3P18.1 [Arabidopsis thaliana] >gi|7940282|gb|AAF70841.1| F24O1.18 [Arabidopsis thaliana] (evalue: 3e-138, score=495)">
      <seq>tttttttttttttttcgtaaatataatcaaactcaaaataaaaatattacaaaaaataaataacaaagtatacataattcataaaaaaaaatgaattcttttttttttgataatggaaaatcaaaggctaattgataacccttgttcagtaatatggaatgactggtggtggtggagatgcgtaggagactccgattaccggtgggagaggaatattttcgtaaaatggtggtggtggtggcggagaagagtaagtgggcgggggaggtgatggtgatggtggcggtggtgatgagtagtagtaagtgggaggaggaggagatggtgatggaggtggtggtgatgagtaggtgtatggtggtgatggttttggttcccaatgtgaattaggaggtggaggtggtggttcgttacaaggtggggtaggtggggttgggtgtgatggtgtttttggatgctcgtatgatggtgttggtggtgatggggtttttgggtgttcgtgtgatggtggagtttttggatgctcgtacgacggtgttggtggtagtggtgatggagtttttggatgttcatacgacggtgttggtggtggtggtggtgatttaggcttgtaagtaggtggtggctcatgatacacggggggtggtggagaataataaactggtggtggtggggacgatggagatgggtggtaatatacaggtgagggtggaggaggtgaatgatgagttacaggtgaaattttgtgagtaggtggtggtggacttctatgttgataggttggggactttttgtaaggtgctggtggaggaagaggagttgatttaggtggcggcggagatcgcttgttatgcgaacccgaagacttccaagtaggtggtggtgggcctcttggctttggttttggttttggctttgtcgaaggagatgtagcaaaagggctataacacttggatttcctacaatcatacggttttgcatcatccgaagagcattctttagcagatctttgattcttctttccaacgatacagttctcctggccgtcaccagatctagtcgcagcacaaactggagcttccccggtgaagtaattgaaggaatacgtaaagttttgcaacctaggaagttggcaaatgctagctggtataaccccagtaagcttgttgtgagccacattcagttcctccacactcctcattttgctcacagttgatggcaatgagccttgaatcttgttgaagctaacatcaaacacggttaacttgttcaacaatccaatctccattggcaaacacccagtgaggttatcattcatcaatatcaactcattcaacgttttccccattttcccaatacttgcgggaatacaccctccaagatcgttattagcaaacacaagaaccgaaacaggagagttacccaagttctccgggatgccaaaacggaatctattgtcattcaaaaacaacgcatccaaatctttatcgaaaagtcctgaaggaactggtccttcaaagtcattaaaccttagatccaaaaacttcaaagaaggtagtgaaagaactaccttaggaaacccaccaacaaacctattattactcaaatcaagctccctaagaagcttcaaatggctaaaggtttttggtacaactccacaaaaacgattcgagttgagatggaaaagaaccagatctgtaagaagaccgagttctgcaactaatgaaccagcaatatcagcatgattaagatcaatgccagctacaactctaatcgaatcatccattaacgaaggagcacaaaacactccaccataggaacacacatttggacctgtccaattagctgtgaagttaaaaggatcagaaaacattgctgttttccaatactgcaacgcgatataagcatcgcgagtccttgagttttcaaaactcaacttactagcattagccttaatgtcatctaatccgatatcgctatcaccttcttgtcctaccacatacgagatctggtaagacaaaagagtaataacgaaaaaagaaattaatacgccccggctaggaggccgcattgctgaatctgatagagattttctagctatgaagaagaaaatgaagtttttgttttttcacaatgtgttgttgaatgaaattgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68474" stop="65595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68184" g_stop="67747" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67746" i_stop="67615" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67614" g_stop="65894" g_length="1721"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="2159" r_length="1721" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U334146" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68184" e_stop="67747"/>
          <exon e_start="67614" e_stop="65894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCAATTTTTCATAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCAAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAATCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTCGTAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGT....................................................................................................................................GTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCGAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAGTCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313100" ref_strand="+" ref_description="SGN-U313100        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | leucine-rich repeat family protein / extensin family protein, similar to extensin-like protein (Lycopersicon esculentum) gi:5917664:gb:AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 | chr1:23115483-23118958 FORWARD | Aliases: F24O1.19(evalue: 1e-138, score=489) genbank/nr: gi|15220780|ref|NP_176434.1| leucine-rich repeat extensin family [Arabidopsis thaliana](evalue: 8e-137, score=489)">
      <seq>gtcttaccagatctcgtatgtggtaggacaagaaggtgatagcgatatcggattagatgacattaaggctaatgctagtaagttgagttttgaaaactcaaagattcgcgatgcttatatcgcgttgcagtattggaaaacagcaatgttttctgatccttttaacttcacagctaattggacaggtccaaatgtgtgttcctatggtggagtgttttgtgctccttcgttaacggatgattcgattagagttgtagctggcattgatcttaatcatgctgatattgctggttcattagttgcagaacttggtcttcttacagatctggttcttttccatctcaactcgaatcgtttttgtggagttgtaccaaaaacctttagccatttgaagcttcttagggagcttgatttgagtaataataggtttgttggtgggtttcctaaggtagttctttcactaccttctttgaagtttttggatctaaggtttaatgactttgaaggaccagttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggtgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttgccaatggagattggattgttgaacaagttaaccgtgtttgatgttagcttcaacaagattcaaggctcattgccatcaactgtgagcaaaatgaggagtgtggaggaactgaatgtggctcacaacaagcttactggggttataccagctagcatttgccaacttcctaggttgcaaaactttacgtattccttcaattacttcaccggggaagctccagtttgtgctgcgactagatctggtgacggccaggagaactgtatcgttggaaagaagaatcaaagatctgctaaagaatgctcttcggatgatgcaaaaccgtatgattgtaggaaatccaagtgttatagcccttttgctacatctccttcgacaaagccaaaaccaaaaccaaagccaagaggcccaccaccacctacttggaagtcttcgggttcgcataacaagcgatctccgncgccacctaaatcaactcctcttccttcaccagcaccttacaaaaagtccccaacctatcaacatagaagtccaccaccacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="65735" stop="67604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66035" g_stop="67304" g_length="1270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1270" r_length="1270" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U313100" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66035" e_stop="67304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</genome_strand>
        <mrna_strand>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAAGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAACGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGNCGCCACCTAAATCAACTCCTCTTCCTTCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313099" ref_strand="+" ref_description="SGN-U313099        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | leucine-rich repeat family protein / extensin family protein, similar to extensin-like protein (Lycopersicon esculentum) gi:5917664:gb:AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 | chr1:23115483-23118958 FORWARD | Aliases: F24O1.19(evalue: 6e-15, score=78.2) genbank/nr: gi|53792759|dbj|BAD53794.1| putative extensin [Oryza sativa (japonica cultivar-group)] (evalue: 1e-14, score=83.6)">
      <seq>aaaacctttagccatttgaagcttcttagggagcttgatttgagtaataataggtttgttggtgggtttcctaaggtagttctttcactaccttctttgaagtttttggatctaaggtttaatgactttgaaggaccagtttattattctccaccaccccccgtgtatcatgagccaccacctacttacaagcctaaatcaccaccaccaccaccaacaccgtcgtatgaacatccaaaaactccatcatcaccactaccaccaacaccgtcgtacgagcatccaaaaactccaccatcacacgaacacccaaaaaccccatcaccaccaacaccatcatacgagcatccaaaaacaccatcaccaccaacaccatcatacgagcatccaaaaaccccatcaccaccaccaccaacaccatcatacgagcatccacaaccccaatcaccaccaccaccaccaccaacaccatcatacgaacacccaaaaactccatcacacccaaccccacctaccccaccttgtaacgaaccaccacctccacctcctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccacctccatcaccatctcctcctcctcccacttactactactcatcaccaccgccaccatcaccatcacctcccccgcccacttactcttctccgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtctcctacgcatgtccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattcatttttttttatgaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66108" stop="68411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66408" g_stop="66545" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66546" i_stop="67391" i_length="846">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67392" g_stop="68111" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="864" r_length="726" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U313099" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66408" e_stop="66545"/>
          <exon e_start="67392" e_stop="68111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACTCACAAAATTTCACCTGTAACTCATCATTCACCTCCTCCACCCTCACCTGTATATTACCACCCATCTCCATCGTCCCCACCACCACCAGTTTATTATTCTCCACCACCCCCCGTGTATCATGAGCCACCACCTACTTACAAGCCTAAATCACCACCACCACCACCAACACCGTCGTATGAACATCCAAAAACT-C--CATCACCACTACCACCAACACCGTCGTACGAGCATCCAAAAACTCCACCATCACACGAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAAT---CACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</genome_strand>
        <mrna_strand>AAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTATTCTCCACCACCCCCCGTGTATCATGAGCCACCACCTACTTACAAGCCTAAATCACCACCACCACCACCAACACCGTCGTATGAACATCCAAAAACTCCATCATCACCACTACCACCAACACCGTCGTACGAGCATCCAAAAACTCCACCATCACACGAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATGTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334147" ref_strand="-" ref_description="SGN-U334147        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: extensin(evalue: 5e-14, score=82)">
      <seq>agactccgattaccggtgggagagggaatatgtttgtagaatggttggtggtggtggcggagaagagtaagtgggcgggggaggtgatggtgatggtggcggtggtgatgagtagtagtaagtggggggaggaggagatggtgatggaggtggtggtgatgagtaggtgtatggtggtgatggttttggttcccaatgtgaattaggaggtggaggtggtggttcgttacaaggtggggtaggtggggttgggtgtgatggagtttttgggtgttcgtatgatggtgttggtggtggtggtggtggtgattggggttgtggatgctcgtatgatggtgttggtggtgatggtgtttttggatgctcgtatgatggtgttggtggtgatggggtttttgggtgttcgtgtgatggtggagtttttggatgctcgtacgacggtgttggtggtagtggtgatgatggagtttttggatgttcatacgacggtgttggtggtggtggtggtgatttaggcttgtaagtaggtggtggctcatgatacacggggggtggtggagaataataaactggtggtggtggtggggacgatggagatgggtggtaatatacaggtgagggtggaggaggtgaatgatgagttacagaagaaattttgtgagtaggtggtggtggacttctatgttataaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68298" stop="66973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67998" g_stop="67663" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67662" i_stop="67613" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67612" g_stop="67272" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="693" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U334147" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67998" e_stop="67663"/>
          <exon e_start="67612" e_stop="67272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCGATTACCGGTGGGAGA-GGAATATTTTCGTAAAATGG-TGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTG-T--TGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTG-----ATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGT-G-G-TGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAAC---TGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGT</genome_strand>
        <mrna_strand>AGACTCCGATTACCGGTGGGAGAGGGAATATGTTTGTAGAATGGTTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGGGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTG..................................................GTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGAAGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313825" ref_strand="+" ref_description="SGN-U313825        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr5:3081458-3085255 REVERSE | Aliases: MYH9.9, MYH9_9(evalue: 1e-08, score=56.2) genbank/nr: gi|18416114|ref|NP_568220.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|15451046|gb|AAK96794.1| splicing factor-like protein [Arabidopsis thaliana](evalue: 5e-07, score=56.2)">
      <seq>gacttgatagcctctcagtttgaaccagtttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74585" stop="82088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74885" g_stop="75390" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U313825" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74885" e_stop="75390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGA</genome_strand>
        <mrna_strand>GACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340252" ref_strand="+" ref_description="SGN-U340252        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcgagaatcgagcgagagcgagagaaagagatgttgagagacagcgagcgtgactttgaatcacgggacagcagatggattgtttccacatcttaatgggctaacaatgcggaaacccttcaaggctcgattgaagaagtggcttattcccacatatattgagtatgataaggttggcaaagcatatggtgtgaggctgtatcagtttttcaaccttttcttctgttcgaagacgaaaatacattaaccctatatgtcattctttttttgtgaaagcagggaaaagtctcaaaattttggtgctgggcagcgtataatgtcacaacacatactgcattcatattcttaacttgaagatgcttcgaaagttcaaattatcttctagaatttgctctatttggacttgttttctttttctctgggaatgttgcgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="75215" stop="76918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75515" g_stop="75588" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75589" i_stop="76116" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76117" g_stop="76214" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="172" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76215" i_stop="76352" i_length="138">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76353" g_stop="76618" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="438" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U340252" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75515" e_stop="75588"/>
          <exon e_start="76117" e_stop="76214"/>
          <exon e_start="76353" e_stop="76618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAGGTTATACTCTTTGCTTCGCTTGTATCTTATGTTACATTATTAGTCTCATGTCATATCAAGTGCTGCTGTTTGTTGCTTCTTAACAATTTTGAGTTTATTTCAAAATGATTAGTGTTTTGATGATAATTATTAATTCAGGATGTAGTGATTGATGAATAGTTTCCAATGTACATCAATATGGTTGGCAACTGCAGTTATGTAGTTGGTTGGCAATTGCAATCATGTAGCTGCTAATGTGGTGAAAGGCATTGCGAAAACTAAAAAGAAATGATCAATATTTGCATCTCATCATCTTTATATCTCAAATTTATATCAATTTTTTTACCGGGCTGTCCACTGTTTTGTAACCCAAAAAACAGAAAATTAGGTAATGGTTGAGTTTAAGTATGTGCTTGAACACACTCTGCTGAGTGTTTCGAGTTCTAGTAGGTTCAAACGGAGAAGGCAATTTAAAGTGGTCTAAGTGCGTAAAAGAGTGTCAGTTTATCCACAAAGAATGTAATATTCTGACTTGGGTTGAAATCGTAGATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAGGTCTGTTAAGTTTCTTTTGGTCTTTGAGATTTTCGCTCACTCTTGAATCCTTCTAATGTTTTTGCATTGATGGATTTAAGGTTACTTTTTTCTTAAATCTGATTTGAGATGTTGACAAATGATGTATTGAATTTCTAGGTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</genome_strand>
        <mrna_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG..........................................................................................................................................GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGGACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345266" ref_strand="+" ref_description="SGN-U345266        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctggtggttggatttctatttgcttcctgtttagatatataagatgaaactcattgggggtcattgagcatttatgaggagatcgtgctatattcacctaaacaagtagataaatgaagtttgcattttctactagcctattggtctatccaaaactttagaatcttgttgactttttccacatttgtctccaaagggcttgccttgatgatctatcctgctgcagtagctactccatctaattgagaagaggtgaaatttagcacagcaagggaggctttagaggatgatgattcctcatgtcataatgtaatttgtagaatgtccatgtatttatgcaagtgtggttgagctttgatgtttatagtagttgattaccttcaatgtagcaggtgctacataaagtacttgaaatgaaaatccactccctactatgtgcaacttaaattttacaaccagagcctcatattttttcgttctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="76318" stop="77402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76618" g_stop="77102" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U345266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76618" e_stop="77102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</genome_strand>
        <mrna_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTGTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322590" ref_strand="+" ref_description="SGN-U322590        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr5:3081458-3085255 REVERSE | Aliases: MYH9.9, MYH9_9(evalue: 3e-40, score=161) genbank/nr: RNA-binding(evalue: 7e-44, score=179)">
      <seq>atgctcccaacacaactcattgcttccatggctcccgaacccattgggatacccagcgagtgtttgttattaaaaaacatgtttgatcctgcaactgagacggatccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="82588" stop="84646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82888" g_stop="82986" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83107" g_stop="83195" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="188" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="303" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84054" g_stop="84347" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="597" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="615"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U322590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82888" e_stop="82986"/>
          <exon e_start="83107" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG........................................................................................................................ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328896" ref_strand="+" ref_description="SGN-U328896        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:At5g52250.1); similar to COP1 homolog [Lycopersicon esculentum] (GB:AAC98912.1); contains InterPro domain G-protein beta WD-40 repeat (InterPro:IPR001680) | chr5:8005237-8006633 FORWARD | Aliases: MRO11.23, MRO11_23(evalue: 4e-97, score=351) genbank/nr: nucleotide(evalue: 3e-95, score=351)">
      <seq>tttgtactcttgccaaatttgggagtataaagtggaaacccggtttagggagtctggttttagggtcgggtgattacgatggagtggttatggagtgtgacctagagaaaaaaatgcccgttttcgagcgtgatgagcatggtggtagacgggtttggagcattgactattgtcagtcggatccggttttgggtgcatccggatccgatgacggaaccatgcaaatgtgggacccgcggtgcggtgacagtggcaagtgtttagctatggtacaacctaccaaagggtatagtacacccgtgtgttgcgtcgaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttcttcgagcatagatggttgtttaaaaatgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtaggaggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaataatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaaccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaatgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaatgactatatatatatattcactcaaaatccagtaaaagacgaagtatcggcaaaatgtgtaatattatttcatgagaagtcaatcgtggccaatacaacaaggtaacacattttcttttttctttttcaattattcttctaattaatacaggagttagaggaattgttcaccatttacatttgtctgaaatagatagatagaggatatgattcgatagaaaaatatctgaagaaatttaaattgcaaatgctatatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="90450" stop="92107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90750" g_stop="91807" g_length="1058"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1058" r_length="1058" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U328896" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1058</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90750" e_stop="91807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</genome_strand>
        <mrna_strand>TTTGTACTCTTGCCAAATTTGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCTGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTGTGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325534" ref_strand="+" ref_description="SGN-U325534        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: AT-P4H-1 | Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides. | chr2:17922642-17925831 FORWARD | Aliases: MFL8.6, AT-P4H-1, A. THALIANA P4H ISOFORM 1, PROLYL 4-HYDROXYLASE(evalue: 4e-117, score=418) genbank/nr: gi|15224220|ref|NP_181836.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana] gi|25408834|pir||G84861 hypothetical protein At2g43080 [imported] - Arabidopsis thaliana gi|3763917|gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gi|20197628|gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gi|29824245|gb|AAP04083.1| unknown protein [Arabidopsis thaliana](evalue: 3e-115, score=418)">
      <seq>agagccaaatctatggactacaaaagttgacgtacaaacatcaatgcacaatgtacaatatatctgtattgaaaaattgcaaaacgtctctcttggttctaccatttcttcactttacaaatactcccaaaacagtccaatcgacaattttctaaaatcaaaattgaaaaccaaaacaactaatttctctatttttcagttcagatttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaaagaatcagttctatagagcccatcatgactatttctctgatagttttaatgtgaagcgtggaggtcaaagaatagctacaatgctcatgtatttgagcgacaatgtggaggggggagaaacatactttcctatggctggcactggtaaatgtagctgtggcggcaaaatgatccaagggttatgtgtaaaacctacgaaaggagatgctgttcttttttggagtatggggcttgatggacaatctgaccctgatagtctacatggaggatgtgaagtaatctcaggagagaaatggtcagctactnaatggatgaggcaaagaactgtatcctaaattcctcatacatttcttcttttttttttttttttggccccacccaaattgaacccggaaaggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="106527" stop="94750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106227" g_stop="105926" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104277" g_stop="104230" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="350" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102643" g_stop="102578" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="416" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102145" g_stop="102093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="469" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101201" g_stop="101136" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="535" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101135" i_stop="100130" i_length="1006">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100129" g_stop="100055" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="610" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100054" i_stop="98420" i_length="1635">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98419" g_stop="98345" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="685" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98073" g_stop="98003" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="756" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97909" g_stop="97858" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="808" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97756" g_stop="97667" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="898" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97666" i_stop="96183" i_length="1484">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96182" g_stop="96090" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="991" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="96089" i_stop="95195" i_length="895">
            <donor d_prob="0.491" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="95194" g_stop="95013" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="992" r_stop="1169" r_length="178" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U325534" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1173</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106227" e_stop="105926"/>
          <exon e_start="104277" e_stop="104230"/>
          <exon e_start="102643" e_stop="102578"/>
          <exon e_start="102145" e_stop="102093"/>
          <exon e_start="101201" e_stop="101136"/>
          <exon e_start="100129" e_stop="100055"/>
          <exon e_start="98419" e_stop="98345"/>
          <exon e_start="98073" e_stop="98003"/>
          <exon e_start="97909" e_stop="97858"/>
          <exon e_start="97756" e_stop="97667"/>
          <exon e_start="96182" e_stop="96090"/>
          <exon e_start="95194" e_stop="95013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTATTATGACATTTGGTTTTTCAGTTTACCGTTGTGAGATGGCTGGCTAATATATGTCAGTATCAAGGCTAACATCTGCAGAAGCACAGGTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGTGTAAGTTCTTTCTCAATAGTTTGTCACTTCTATTATTGGCTTATTGCTCTGTTTGTCTATTTCTCTTCTCAAAATGAGAGAAATACTTGCTTATTTTGCAGTTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATGGTAATCACTAATGAATGATGAAACCTTGATTAATAACTTCTTTTTTGTATTATTGACACTCCATTTTCTCTGGTAGAGTACTCAACTTAAATTGTATGAAATGAATCTATTGTTGGATGCCTTAGTCATATTCAGTCAAATAATTAAGGAACAAAAATTATTTGTACTGACACTTCATAATCCTGGTATTTAATGAAAGCTTCATGTCTCTGTACTATCAATTTAAGTGCTATGTGCGTATTTTCAACATATCAATCAATATTTGATCACTTAACTAGGGGTTCCATGCAAAATTTGTATAATTTTGAATGGAGCTGCTTTGGATGTAGACATTTATATGGTGCTGGAACTTGTCCATAACCTTGTGTTTACCAGTTATATCATCTTTTTGCCCTTTACATTTGTTGATAGAAGAATTATCTGTTATATAAGGAACATGCCGAGTCTTAGTTGCAAATACTTTTCCTTTTATTTGATGTATGCTAAGTCTACAAATTTTGGGTGGACGCCCTGTGAACAAAAAGAACAAAAATTGCTTAATCAGTAGTTTCTGGAGGAATTTGTTTGCTTTTATAATATTTAGTTTCTTGAGGGTTTGTGATTGCTCACTGCTGTCAAGAATTTTCTGCTGCAATTATTGTTCTTCTGTATTTCTTGCGAATGTTGCTTGAAGATAAGTTTGAATTGATTTTATGTTGCAGAAATCAATAAACATTCCATTTTTTGTCTATATTCCAAAAGATTGGAAACTTGATTTCTTTCTGTTTCATAATTGAAAGACGTGACACTAGAAAGTTCAAGTTTTGGTGATTTTAGCTTTACTGTATATCATGCCAGTATTTTCTTTAATTCGCATACTAAATTTTCCCTTGTTTTATCATGAGCATAACATTAAACCATTATTTTATCCGAGCAAAATAATTGTAATCCTAAATTGTCTAAACGAATTAAATCAAATTTTACAGCCTATAATCTTCTCACATTTCTATATTTATTGTATAACTAGTAGTAGCTAGTACAGATTTGAATGGTGGTTTGCAATTCGATAAGGGTGTAGGCATGGGAATAGTTTGCGCGGTCCGAGAGGCAGTATAGGAGTTGGGAAAAAAAGGGTGGAGGGTATAAAAAGTCTACCGAGTTGTTAAGGTTTTGTTAAATTTTGTTTACCGCTTTTTGAAAGGATTGAACTGGCTTATTTCAGATATGATTATGTGCTAAGTCTACTGAGCACAACATTTCAGGGAGAAATTCCCAAAATTAAGCTTTCACTTCCGGGCCAGAATGAAATTTGTCTTGTTATGTATGCTGTTCCCTGGAAATGTGTTACCAGGCCATATATGTTTCTTTTTCCATTTTTTCTGGTTTACCTGACCGTACATGTCGATTCCACCAACTTTGGTTGCCTTCCCCTATCTTTTGCGCAACTTTTTTCCCCCAGGTTTCTAGTTTCATGCCTGTGTTTTAATTTCAAATGCTGTCATCAGGCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATGGTTAGTATTTTCACCTGCTATAAACCTTTTCGCTGGAACTTTTGACGAAAAATTCATCTATGGAACCCTCTTAAGTACTTCGAAAATGTTGGCCTAGTTGCTTTAAGATTTTAAGAACTGCAACATCTTGTTAGTCATTTTACTTGGCATCCATAATGTGTCACACACTCAATATTTCTAGCCAAAGTCTCCTTAATTGAATCTAGTTCCTTTGTGCATCGTTTGGACTAGATGGGATATGAGACTATTGTTTCATTTATTTACTGGATACACAGAGTTTCTTATTTTTGAACATGTATTAGAATTTTATACATAAAAGCTTCTGCCGCAGAGTACCAACAACATAGTGTAGACCTACAAGTGGAGTCTGGAGAGGGTAGAGGTGTAGGCAGACCTTACCCTATCTTGGGAGGTAAAGAGGTTGTTTCCGATAGATCCTTAGCTCAAGGAAAAACATTCCAAAACTGATCGGGAAAAAAAAGGAAAGAAATAACGGTAGTGAAGAAACCATGGCAAAATACTGTAGAAACCATGTCAAAGCATTCTGGAAAAAGAAAGAATGAATTGAAGGAATGTTACTAAAGGGACATCAGGTGTGTTATTGGGACCCTTATGCCCCTCCCAGAGCTTTGGTCTAGTAATTAGAGCGGGCGCGTGATGTATGAATGAGGCACAGGTCACGTGTTTGAATCTTGCCACAGATAAAAAGTCTGGTATGTAAGTGGAGAAAGATAGAGAGGTCCTGGTACTTCATCCGAGTTTCAAACCGTGTGCTACTAGCACTCGGGGATTTCTCAGTTTTCATATTAGTTTTTAAATATCTATTATCTTTAAAACCTTTTTTTCTTTCTGAAACCATGAATTCCACTTGATCAATGCTGTTTTTTCCTTTTAGGGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTACTCTCAGGAGAGAAATGGTCAGCTACTAAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACATTTCTTCTTCTTTTTTCTTTTTTTTTTCGTTCTATCTATATTGTATCTTGATAGGAAAAAAA</genome_strand>
        <mrna_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG.............................................................................................GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT.....................................................................................................TTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTAATCTCAGGAGAGAAATGGTCAGCTACTNAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACA--T-TTCTTCTTTTTT-TTTTTTTTTTGGCCCCACCCAAATTGAACCCGGAAAGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338230" ref_strand="+" ref_description="SGN-U338230        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: AT-P4H-1 | Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides. | chr2:17922642-17925831 FORWARD | Aliases: MFL8.6, AT-P4H-1, A. THALIANA P4H ISOFORM 1, PROLYL 4-HYDROXYLASE(evalue: 4e-49, score=175) genbank/nr: gi|15224220|ref|NP_181836.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana] gi|25408834|pir||G84861 hypothetical protein At2g43080 [imported] - Arabidopsis thaliana gi|3763917|gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gi|20197628|gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gi|29824245|gb|AAP04083.1| unknown protein [Arabidopsis thaliana](evalue: 3e-47, score=175)">
      <seq>agaactagtctcgagttttttttttttttttttgatttgtctcctccggcatttgccgtttcgatcatagtaatcatcagtggtgttgattacttgattggattggagttaatctggactaattaaaaaccccatgtggaaaaaaagggaaaaaatttaaatggtgatacatatgtgtgtttgttttggaaatggaggtttaaactttaaagattgaatctttaggggtggggtggtggagggggtacatgngggtttgatctgtgatgatcattcttgattaggatggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaaagaatcagttctatagagcccatcatgactatttctctgatagttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="106166" stop="97554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105938" g_stop="105926" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="105870" i_length="56">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105869" g_stop="105594" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="288" r_length="275" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105593" i_stop="104278" i_length="1316">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104277" g_stop="104230" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="336" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102643" g_stop="102578" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="402" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102145" g_stop="102093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="455" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101201" g_stop="101136" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="521" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101135" i_stop="98420" i_length="2716">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98419" g_stop="98345" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="596" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98073" g_stop="98003" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="667" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97909" g_stop="97858" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="719" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97756" g_stop="97751" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="725" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-U338230" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105938" e_stop="105926"/>
          <exon e_start="105869" e_stop="105594"/>
          <exon e_start="104277" e_stop="104230"/>
          <exon e_start="102643" e_stop="102578"/>
          <exon e_start="102145" e_stop="102093"/>
          <exon e_start="101201" e_stop="101136"/>
          <exon e_start="98419" e_stop="98345"/>
          <exon e_start="98073" e_stop="98003"/>
          <exon e_start="97909" e_stop="97858"/>
          <exon e_start="97756" e_stop="97751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATG-GGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTATTATGACATTTGGTTTTTCAGTTTACCGTTGTGAGATGGCTGGCTAATATATGTCAGTATCAAGGCTAACATCTGCAGAAGCACAGGTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGTGTAAGTTCTTTCTCAATAGTTTGTCACTTCTATTATTGGCTTATTGCTCTGTTTGTCTATTTCTCTTCTCAAAATGAGAGAAATACTTGCTTATTTTGCAGTTTAAT</genome_strand>
        <mrna_strand>AGAACTAGTCTCG........................................................AGTTTTTTTTTTT-TTTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGNGGGTTTGATCT-GTGATGATCATTCTTGATTAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG.............................................................................................GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT.....................................................................................................TTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313374" ref_strand="+" ref_description="SGN-U313374        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | clathrin adaptor complex small chain family protein, contains Pfam profile: PF01217 clathrin adaptor complex small chain | chr4:16832506-16834007 FORWARD | Aliases: None(evalue: 3e-83, score=305) genbank/nr: gi|1762309|gb|AAB39510.1| AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin assembly protein(evalue: 5e-82, score=307)">
      <seq>gggcgattggcggccaatcggccgaattgagaaaacacaaactagcaaagaaaaaaatataagactgtacagaaaatagagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagtttgcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttataaaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccatttcccccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="115109" stop="120538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115405" g_stop="115560" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="172" r_length="155" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="259" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="351" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="460" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="496" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="583" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119936" g_stop="120239" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="887" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="900" polyA_stop="913"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U313374" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115405" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCAAATCTTAGAAAACACAAACTAGTAAAGAAAAAAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAC</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGAGAAAACACAAACTAGCAAAGAAAAAAATATAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTGCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wey05d/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334314" ref_strand="+" ref_description="SGN-U334314        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | clathrin adaptor complex small chain family protein, contains Pfam profile: PF01217 clathrin adaptor complex small chain | chr4:16832506-16834007 FORWARD | Aliases: None(evalue: 2e-71, score=265) genbank/nr: gi|1762309|gb|AAB39510.1| AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin assembly protein(evalue: 3e-70, score=268)">
      <seq>tgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtccagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-Hz5eR/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="116736" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="110" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="119768" i_length="927">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="398" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119936" g_stop="119948" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="411" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-U334314" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTG</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCCAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16186" PGL_stop="17945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16186" e_stop="16719"/>
            <exon e_start="17779" e_stop="17945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16186" e_stop="16719" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="17779" e_stop="17945" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16186" stop="16719"/>
              <exon start="17779" stop="17945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG : TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</gDNA_template>
            <first_frame> *  Q  F  R  N  P  N  F  S  M  N  S  *  L  R  S  F  K  F  S  D  G  G  *  L  F  N  P  R  P  Q  A  M  W  F  L  S  Y  S  R  *  N  F  V  S  A  A  L  L  R  A  P  *  H  P  P  F  K  F  T  V  L  H  R  R  R  R  F  *  Y  P  L  C  N  G  *  R  R  *  I  V  S  H  W  F  S  Y  G  R  G  P  E  *  C  C  S  D  E  E  A  E  Q  N  W  N  G  E  W  *  Y  K  R  G  A  S  V  A  Q  T  C  N  A  K  M  L  E  D  C  C  *  G  S  *  G  C  G  A  W  P  *  *  R  S  *  G  C  C  S  C  G  C  V  L  A  F  S  F  V  V  R  L  A  V  P  Q  V  W  P  C  C  C  S  T  F  P  A  Y  Q  :  L  *  L  G  C  L  E  F  Y  A  S  V  C  *  T  W  C  *  K  G  F  *  Y  L  E  S  V  R  L  S  C  S  R  M  Q  T  A  L  Q  C  I  *  P  F  Q  E  K  A  L  *  A  P  *  N  F   </first_frame>
            <second_frame>  D  S  F  E  T  L  T  S  P  *  I  L  S  S  E  A  S  N  S  A  M  E  G  D  Y  S  I  P  D  H  K  L  C  G  F  F  L  T  A  V  E  I  S  S  P  P  H  S  S  E  L  H  S  T  L  P  L  N  S  Q  C  Y  I  A  G  D  G  S  N  I  H  F  V  T  D  N  D  V  E  L  C  P  I  G  S  H  T  E  E  D  R  N  D  V  V  P  M  K  K  R  S  R  I  G  M  V  N  G  S  I  S  V  V  H  Q  L  H  K  L  V  M  Q  K  C  L  K  I  V  A  R  V  L  E  V  V  E  R  G  H  D  E  E  V  R  A  V  V  L  V  D  V  Y  L  P  L  A  L  W  S  G  W  Q  F  P  K  S  G  P  V  A  A  A  L  F  R  H  I  S :   C  D  W  D  A  W  S  S  M  L  Q  S  A  K  L  G  V  E  K  D  F  S  I  W  N  L  S  D  C  H  V  L  G  C  K  L  H  C  S  A  S  D  P  S  K  K  K  L  F  E  L  H  E  I  F  </second_frame>
            <third_frame>   T  V  S  K  P  *  L  L  H  E  F  L  A  P  K  L  Q  I  Q  R  W  R  V  I  I  Q  S  Q  T  T  S  Y  V  V  S  F  L  Q  P  L  K  F  R  L  R  R  T  P  P  S  S  I  A  P  S  L  *  I  H  S  A  T  S  P  E  T  V  L  I  S  T  L  *  R  I  T  T  L  N  C  V  P  L  V  L  I  R  K  R  T  G  M  M  L  F  R  *  R  S  G  A  E  L  E  W  *  M  V  V  *  A  W  C  I  S  C  T  N  L  *  C  K  N  A  *  R  L  L  L  G  F  L  R  L  W  S  V  A  M  M  K  K  L  G  L  L  F  L  W  M  C  T  C  L  *  L  C  G  P  V  G  S  S  P  S  L  A  L  L  L  Q  H  F  S  G  I  S   : V  V  T  G  M  L  G  V  L  C  F  S  L  L  N  L  V  L  K  R  I  L  V  F  G  I  C  P  T  V  M  F  *  D  A  N  C  I  A  V  H  L  T  L  P  R  K  S  S  L  S  S  M  K  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16217" stop="16719"/>
                    <exon start="17779" stop="17944"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSEASNSAMEGDYSIPDHKLCGFFLTAVEISSPPHSSELHSTLPLNSQCYIAGDGSNIHFVTDNDVELCPIGSHTEEDRNDVVPMKKRSRIGMVNGSISVVHQLHKLVMQKCLKIVARVLEVVERGHDEEVRAVVLVDVYLPLALWSGWQFPKSGPVAAALFRHISCDWDAWSSMLQSAKLGVEKDFSIWNLSDCHVLGCKLHCSASDPSKKKLFELHEIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27888" PGL_stop="26838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27888" e_stop="26838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="27888" e_stop="26838" e_length="1051"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="26838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAATTATTT</gDNA_template>
            <first_frame> C  I  *  V  L  *  L  N  I  G  *  S  I  I  K  S  Y  K  *  Q  Q  L  F  F  H  K  I  S  Q  *  R  D  Q  E  K  S  A  Q  D  I  S  S  Y  N  I  *  Y  Y  *  T  K  T  S  G  A  R  L  *  M  C  H  L  L  I  R  V  W  S  W  R  Q  N  Q  S  A  T  *  V  Q  P  W  V  P  C  S  M  Y  *  *  M  A  Q  F  T  L  F  L  P  Y  L  *  A  L  P  H  *  H  L  R  K  N  C  *  W  W  Q  F  F  Y  Y  *  *  *  Y  *  R  G  S  S  T  T  S  Y  S  K  D  *  T  S  P  T  *  R  C  D  I  Q  L  I  Y  N  Q  N  L  V  Q  K  N  S  N  I  A  R  F  S  F  S  K  S  L  L  F  P  S  S  D  Y  E  R  R  N  L  E  E  E  C  I  T  H  T  Q  L  G  *  K  L  R  E  L  A  C  S  F  Q  *  V  I  K  C  I  Y  K  L  R  C  I  F  S  L  K  F  K  V  M  V  *  V  P  I  L  G  *  I  G  F  C  I  L  N  *  I  K  R  D  P  L  I  N  L  T  L  K  L  E  K  K  M  G  I  I  V  D  D  G  L  M  I  R  N  K  V  L  S  I  Y  F  I  F  I  K  G  I  K  *  N  G  R  C  *  I  F  Y  F  W  M  V  K  F  F  M  R  L  K  V  Y  I  F  M  N  N  K  N  C  F  S  K  D  K  K  G  T  F  S  P  K  G  F  *  R  N  I  S  T  *  K  H  F  L  Y  F  E  N  L  L  I  K  R  K  I  I  </first_frame>
            <second_frame>  A  F  K  C  S  S  L  I  L  A  D  P  S  S  N  H  T  S  N  N  N  S  S  S  T  K  L  V  N  R  G  I  K  K  K  A  L  K  T  F  P  V  I  T  Y  S  T  T  E  P  K  H  P  G  L  D  S  E  C  V  I  C  L  S  E  F  G  V  G  D  K  I  K  V  L  P  K  C  N  H  G  F  H  V  R  C  I  D  K  W  L  N  S  H  S  S  C  P  T  C  R  H  S  L  I  D  T  C  E  K  I  V  N  G  G  N  S  S  T  T  N  N  N  I  R  E  A  A  V  Q  Q  V  I  V  R  I  E  P  L  Q  R  E  G  V  I  S  N  *  F  T  I  K  I  W  Y  K  K  I  V  I  *  L  D  F  P  L  V  N  L  F  F  F  R  A  L  I  M  K  E  G  T  *  K  K  N  V  S  H  I  L  N  *  V  R  S  L  E  S  *  H  V  V  S  N  E  L  S  S  V  Y  T  S  *  G  V  Y  F  P  *  S  L  K  L  W  Y  K  F  L  S  *  G  K  L  D  F  V  F  *  I  K  L  S  G  T  R  *  S  I  *  L  *  N  W  K  K  K  W  E  *  L  *  M  M  G  *  *  L  G  I  K  C  Y  Q  F  I  L  F  L  *  K  E  *  S  R  M  V  D  V  E  Y  F  I  F  G  W  L  N  F  L  *  G  *  K  C  I  F  L  *  I  T  R  I  V  F  Q  K  I  K  K  E  P  F  P  R  K  D  F  K  E  I  *  V  L  K  N  I  F  C  I  L  K  I  Y  *  L  N  A  K  L  F </second_frame>
            <third_frame>   H  L  S  A  L  A  *  Y  W  L  I  H  H  Q  I  I  Q  V  T  T  T  L  L  P  Q  N  *  S  I  E  G  S  R  K  K  R  S  R  H  F  Q  L  *  H  I  V  L  L  N  Q  N  I  R  G  S  T  L  N  V  S  F  A  Y  Q  S  L  E  L  E  T  K  S  K  C  Y  L  S  A  T  M  G  S  M  F  D  V  L  I  N  G  S  I  H  T  L  L  A  L  L  V  G  T  P  S  L  T  L  A  K  K  L  L  M  V  A  I  L  L  L  L  I  I  I  L  E  R  Q  Q  Y  N  K  L  *  *  G  L  N  L  S  N  V  K  V  *  Y  P  I  N  L  Q  S  K  F  G  T  K  K  *  *  Y  S  *  I  F  L  *  *  I  S  S  F  S  E  L  *  L  *  K  K  E  P  R  R  R  M  Y  H  T  Y  S  I  R  L  E  A  *  R  A  S  M  *  F  P  M  S  Y  Q  V  Y  I  Q  V  K  V  Y  I  F  P  K  V  *  S  Y  G  I  S  S  Y  L  R  V  N  W  I  L  Y  F  K  L  N  *  A  G  P  A  N  Q  S  N  F  E  I  G  K  K  N  G  N  N  C  R  *  W  V  D  D  *  E  *  S  A  I  N  L  F  Y  F  Y  K  R  N  K  V  E  W  *  M  L  N  I  L  F  L  D  G  *  I  F  Y  E  V  K  S  V  Y  F  Y  E  *  Q  E  L  F  F  K  R  *  K  R  N  L  F  P  E  R  I  L  K  K  Y  K  Y  L  K  T  F  F  V  F  *  K  F  I  N  *  T  Q  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27887" stop="27444"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKCSSLILADPSSNHTSNNNSSSTKLVNRGIKKKALKTFPVITYSTTEPKHPGLDSECVICLSEFGVGDKIKVLPKCNHGFHVRCIDKWLNSHSSCPTCRHSLIDTCEKIVNGGNSSTTNNNIREAAVQQVIVRIEPLQREGVISN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32368" PGL_stop="31661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32368" e_stop="31661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="32368" e_stop="31661" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32368" stop="31661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</gDNA_template>
            <first_frame> I  S  Q  Q  F  L  S  Y  I  I  F  L  F  Y  F  Q  D  *  L  L  S  I  A  H  L  R  I  I  L  L  N  I  I  S  F  G  F  V  G  H  L  Q  S  F  F  L  F  S  L  C  S  F  Y  E  R  F  S  F  L  H  I  R  D  L  K  R  L  G  G  Q  K  I  F  I  F  L  R  I  Q  K  I  *  K  D  H  M  V  K  I  S  *  F  Q  P  I  R  D  L  N  I  P  S  G  Q  E  M  F  I  S  T  H  T  R  S  A  V  K  I  S  *  F  P  I  G  I  I  L  L  I  V  K  R  E  F  L  F  Y  D  G  S  S  Q  G  Q  *  I  *  I  S  R  N  R  E  N  K  D  I  I  K  I  Q  *  I  K  D  Y  T  Q  P  E  K  L  D  *  I  P  R  K  A  L  V  S  L  P  F  S  S  F  H  R  T  *  W  L  H  *  K  A  S  L  L  T  F  R  I  H  G  W  K  S  E  K  A  V  F  N  F  R  F  S  *  R  K  S  S  I  L  D  S  K  T  S  K  Q  A  F </first_frame>
            <second_frame>  S  L  N  N  F  Y  H  I  S  Y  F  Y  F  I  F  R  I  D  C  F  L  S  L  T  F  V  S  F  S  L  I  L  Y  L  L  V  L  *  A  T  Y  N  L  F  F  F  L  V  Y  V  R  F  M  R  D  F  H  F  Y  T  Y  E  I  *  K  D  *  V  V  K  K  S  S  Y  F  Y  A  Y  K  R  S  E  K  T  I  W  S  K  Y  H  N  F  N  L  Y  E  I  *  I  Y  Q  V  V  K  R  C  S  F  L  P  I  R  D  R  R  S  R  Y  L  N  S  L  L  V  *  Y  C  *  *  *  R  E  N  F  Y  F  M  M  D  H  H  R  D  N  E  F  E  Y  Q  E  I  E  K  T  K  T  S  S  K  F  N  R  S  R  T  I  H  S  P  R  N  S  I  E  F  P  E  K  P  L  Y  L  Y  P  S  P  H  S  I  E  R  N  G  S  I  K  K  L  H  C  S  P  L  G  S  M  V  G  K  V  K  K  L  Y  S  I  F  D  S  R  K  E  N  P  R  S  S  I  P  K  P  Q  S  K  H   </second_frame>
            <third_frame>   L  S  T  I  S  I  I  Y  H  I  F  I  L  F  S  G  L  I  A  F  Y  R  S  P  S  Y  H  S  P  *  Y  Y  I  F  W  F  C  R  P  L  T  I  F  F  S  F  *  F  M  F  V  L  *  E  I  F  I  S  T  H  T  R  F  E  K  T  R  W  S  K  N  L  H  I  S  T  H  T  K  D  L  K  R  P  Y  G  Q  N  I  I  I  S  T  Y  T  R  F  E  Y  T  K  W  S  R  D  V  H  F  Y  P  Y  E  I  G  G  Q  D  I  L  I  P  Y  W  Y  N  I  V  N  S  K  E  R  I  F  I  L  *  W  I  I  T  G  T  M  N  L  N  I  K  K  S  R  K  Q  R  H  H  Q  N  S  I  D  Q  G  L  Y  T  A  R  E  T  R  L  N  S  P  K  S  P  C  I  S  T  L  L  L  I  P  S  N  V  M  A  P  L  K  S  F  I  A  H  L  *  D  P  W  L  E  K  *  K  S  C  I  Q  F  S  I  L  V  K  K  I  L  D  P  R  F  Q  N  L  K  A  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31977" stop="31663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RENFYFMMDHHRDNEFEYQEIEKTKTSSKFNRSRTIHSPRNSIEFPEKPLYLYPSPHSIERNGSIKKLHCSPLGSMVGKVKKLYSIFDSRKENPRSSIPKPQSKH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32207" stop="31956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIFISTHTRFEKTRWSKNLHISTHTKDLKRPYGQNIIISTYTRFEYTKWSRDVHFYPYEIGGQDILIPYWYNIVNSKERIFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35378" PGL_stop="34839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35378" e_stop="34839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35378" e_stop="34839" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35378" stop="34839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</gDNA_template>
            <first_frame> G  V  G  L  H  *  R  T  P  T  N  W  G  L  N  R  E  N  T  L  R  F  D  Q  V  F  W  *  S  F  P  S  S  F  C  G  L  L  P  Q  Y  L  Y  Y  Y  L  C  V  E  C  L  T  W  H  E  K  K  C  T  Y  Q  G  E  I  F  K  I  C  F  V  I  V  L  S  S  T  K  T  Y  D  S  F  A  T  L  T  *  Y  V  Y  I  V  N  T  K  T  V  I  C  V  N  S  V  L  I  F  L  L  M  F  D  M  S  T  L  F  S  Y  C  Y  D  L  E  K  D  H  L  T  A  F  S  R  T  C  I  H  F  L  L  K  A  Q  K  T  I  I  G  Q  Q  S  L  L  I  Q  Y  E  K  S  L  E  N  L  K  K  *  H  F  L  Y  A  C  *  V  V  I  C  I  F  F  F </first_frame>
            <second_frame>  V  L  D  F  I  S  G  H  Q  L  I  G  D  *  T  G  K  I  P  F  D  L  I  K  F  S  G  D  H  F  L  L  L  F  V  D  C  C  L  N  I  Y  I  I  I  F  A  L  S  V  *  L  G  M  K  R  N  V  L  I  K  E  K  S  S  R  F  A  L  L  L  F  Y  Q  V  P  K  L  M  T  L  L  Q  H  *  L  N  M  C  I  *  *  I  L  K  L  *  Y  V  L  T  L  C  L  Y  F  C  *  C  L  I  C  L  H  S  F  H  I  V  M  T  L  K  K  I  I  L  Q  L  S  L  E  P  V  F  I  F  S  *  K  L  K  R  Q  S  *  G  S  N  H  S  *  F  S  M  K  K  V  L  K  T  S  K  S  S  T  F  C  M  R  V  E  *  *  F  V  S  F  F   </second_frame>
            <third_frame>   C  W  T  S  L  A  D  T  N  *  L  G  I  E  Q  G  K  Y  P  S  I  *  S  S  F  L  V  I  I  S  F  F  F  L  W  I  V  A  S  I  S  I  L  L  S  L  R  *  V  F  N  L  A  *  K  E  M  Y  L  S  R  R  N  L  Q  D  L  L  C  Y  C  S  I  K  Y  Q  N  L  *  L  F  C  N  T  D  L  I  C  V  Y  S  K  Y  *  N  C  N  M  C  *  L  C  A  Y  I  S  V  N  V  *  Y  V  Y  T  L  F  I  L  L  *  P  *  K  R  S  S  Y  S  F  L  *  N  L  Y  S  F  S  P  K  S  S  K  D  N  H  R  A  A  I  T  L  N  S  V  *  K  K  S  *  K  P  Q  K  V  A  L  S  V  C  V  L  S  S  D  L  Y  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35117" stop="34884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVYIVNTKTVICVNSVLIFLLMFDMSTLFSYCYDLEKDHLTAFSRTCIHFLLKAQKTIIGQQSLLIQYEKSLENLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41443" PGL_stop="40682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41443" e_stop="40682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="41443" e_stop="40682" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41443" stop="40682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAATGCAGGATT</gDNA_template>
            <first_frame> K  I  R  R  N  K  L  L  A  T  K  E  G  D  T  S  R  V  D  A  G  P  I  A  Q  S  V  H  I  Q  E  K  I  V  V  D  H  S  S  T  S  T  N  K  P  V  Y  S  S  A  A  V  N  A  S  A  R  V  H  V  S  I  A  N  G  S  D  V  N  R  L  K  Q  E  K  L  K  G  V  S  G  S  S  V  D  P  R  G  A  D  A  V  P  K  K  K  V  K  R  K  H  E  S  E  L  G  E  S  L  F  H  S  E  K  L  T  S  T  Q  A  E  E  K  N  K  T  N  K  H  T  G  C  P  T  P  K  P  N  N  V  S  T  S  G  F  E  Q  L  T  *  C  N  F  C  L  L  H  C  P  C  F  L  V  L  *  L  Y  I  V  I  L  A  R  Y  P  *  E  T  *  V  S  Y  F  *  S  H  S  *  K  A  H  L  V  K  A  K  H  *  K  I  D  V  L  L  A  A  R  V  S  A  V  G  H  F  D  A  S  F  I  Y  G  L  E  I  A  L  F  L  G  S  F  C  Y  Q  L  K  F  G  R  H  R  T  F  *  Y  F  S  G  L  D  K  C  R  I </first_frame>
            <second_frame>  K  L  G  G  T  N  Y  W  P  Q  R  K  G  I  L  V  E  *  M  L  D  L  L  P  S  R  C  I  S  K  K  R  L  *  L  I  I  L  Q  L  Q  Q  T  S  Q  Y  T  V  V  Q  L  *  M  L  L  H  E  C  M  F  P  *  L  M  V  L  M  *  I  V  *  S  R  R  S  *  R  E  F  L  A  A  L  L  I  H  E  E  Q  M  R  C  Q  K  R  K  *  R  G  N  M  S  Q  N  W  V  K  V  C  F  T  A  R  N  *  L  P  H  R  Q  R  R  R  T  K  P  T  S  I  L  V  V  L  L  Q  N  Q  I  M  F  R  P  P  A  L  N  S  *  H  D  A  I  S  A  S  C  I  A  P  V  F  *  F  C  N  Y  I  *  L  S  W  R  V  T  H  K  K  P  E  S  R  I  F  E  V  T  A  E  R  H  I  *  L  R  Q  N  I  R  K  L  M  S  Y  W  Q  L  G  S  L  L  L  G  I  L  M  L  V  L  F  M  D  W  K  L  L  S  S  L  V  H  S  V  T  S  *  N  S  V  V  I  E  L  F  S  I  F  L  G  W  I  N  A  G   </second_frame>
            <third_frame>   N  *  E  E  Q  I  I  G  H  K  G  R  G  Y  *  *  S  R  C  W  T  Y  C  P  V  G  A  Y  P  R  K  D  C  S  *  S  F  F  N  F  N  K  Q  A  S  I  Q  *  C  S  C  K  C  F  C  T  S  A  C  F  H  S  *  W  F  *  C  E  S  S  K  A  G  E  A  K  G  S  F  W  Q  L  C  *  S  T  R  S  R  C  G  A  K  K  E  S  E  E  E  T  *  V  R  I  G  *  K  F  V  S  Q  R  E  I  D  F  H  T  G  R  G  E  E  Q  N  Q  Q  A  Y  W  L  S  Y  S  K  T  K  *  C  F  D  L  R  L  *  T  A  D  M  M  Q  F  L  P  L  A  L  P  L  F  S  S  S  V  I  I  Y  S  Y  L  G  A  L  P  I  R  N  L  S  L  V  F  L  K  S  Q  L  K  G  T  F  S  *  G  K  T  L  E  N  *  C  L  I  G  S  *  G  L  C  C  W  A  F  *  C  *  F  Y  L  W  T  G  N  C  S  L  P  W  F  I  L  L  P  A  K  I  R  S  S  S  N  F  L  V  F  F  W  V  G  *  M  Q  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41443" stop="40994"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRRNKLLATKEGDTSRVDAGPIAQSVHIQEKIVVDHSSTSTNKPVYSSAAVNASARVHVSIANGSDVNRLKQEKLKGVSGSSVDPRGADAVPKKKVKRKHESELGESLFHSEKLTSTQAEEKNKTNKHTGCPTPKPNNVSTSGFEQLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47210" PGL_stop="44628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47210" e_stop="46871"/>
            <exon e_start="45200" e_stop="45101"/>
            <exon e_start="44934" e_stop="44825"/>
            <exon e_start="44714" e_stop="44628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47210" e_stop="46871" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46870" i_stop="45201" i_length="1670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45200" e_stop="45101" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45100" i_stop="44935" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44934" e_stop="44825" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.923">
            <gDNA_intron_boundary i_start="44824" i_stop="44715" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="44714" e_stop="44628" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47210" stop="46871"/>
              <exon start="45200" stop="45101"/>
              <exon start="44934" stop="44825"/>
              <exon start="44714" stop="44628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG : AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT : TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG : CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAGCTTCGCACATTGAAG</gDNA_template>
            <first_frame> F  *  N  T  N  N  K  E  S  C  R  Y  P  R  Y  V  G  A  I  S  I  S  I  I  A  W  Q  F  C  R  R  K  R  P  *  P  A  E  N  W  S  H  P  I  Q  E  S  R  *  Q  I  K  R  W  F  *  N  I  W  K  I  I  S  E  V  T  *  Q  K  F  L  C  S  R  E  I  *  C  W  K  I  S  K  Y  F  *  R  N  R  P  V  C  S  A  P  *  *  E  V  *  C  Q  W  L  *  G  K  E  L  R  S  D  Y   : E  R  S  C  Y  A  E  K  G  R  I  E  W  *  T  K  R  Y  N  A  *  E  G  H  Q  G  F  G  E  D  R  C  R  I :   K  A  T  K  Y  G  G  S  G  C  *  *  F  I  S  G  Y  Q  K  E  V  T  T  *  N  K  A  E  A  G  K  S  C  P  T  G   : A  S  *  S  W  K  N  I  Q  *  V  N  *  S  F  N  E  Y  C  R  P  L  D  T  A  S  H  I  E  </first_frame>
            <second_frame>  S  E  I  P  T  T  K  K  A  A  D  T  Q  D  M  S  E  L  S  P  S  A  S  L  R  G  N  S  A  E  E  K  D  L  D  Q  Q  K  I  G  V  T  Q  S  K  N  L  G  D  K  L  K  D  G  S  E  I  S  G  K  S  S  Q  R  L  H  D  R  S  S  Y  A  Q  E  K  S  N  V  G  R  S  V  N  I  S  D  G  I  D  Q  S  V  Q  R  R  D  E  K  F  N  V  S  G  F  E  G  K  N  S  G  Q  T  M  :  K  D  P  A  M  Q  R  K  E  G  S  S  G  R  P  K  G  T  M  L  E  K  A  I  R  D  L  E  K  I  V  A  E   : L  R  P  P  N  M  E  V  Q  D  A  D  N  S  S  Q  A  I  K  R  R  L  P  L  E  I  K  Q  R  L  A  K  V  A  R  L  A  :  Q  A  S  H  G  K  I  S  N  E  L  I  S  R  L  M  S  I  V  G  H  L  I  Q  L  R  T  L  K </second_frame>
            <third_frame>   L  K  Y  Q  Q  Q  R  K  L  Q  I  P  K  I  C  R  S  Y  L  H  Q  H  H  C  V  A  I  L  Q  K  K  K  T  L  T  S  R  K  L  E  S  P  N  P  R  I  *  V  T  N  *  K  M  V  L  K  Y  L  E  N  H  L  R  G  Y  M  T  E  V  L  M  L  K  R  N  L  M  L  E  D  Q  *  I  F  L  T  E  *  T  S  L  F  S  A  V  M  R  S  L  M  S  V  A  L  R  E  R  T  Q  V  R  L  * :   K  I  L  L  C  R  E  R  K  D  R  V  V  D  Q  K  V  Q  C  L  R  R  P  S  G  I  W  R  R  S  L  Q  N  :  *  G  H  Q  I  W  R  F  R  M  L  I  I  H  L  R  L  S  K  G  G  Y  H  L  K  *  S  R  G  W  Q  K  L  P  D  W  R :   K  L  V  M  E  K  Y  P  M  S  *  L  V  V  *  *  V  L  S  A  T  *  Y  S  F  A  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47209" stop="46871"/>
                    <exon start="45200" stop="45101"/>
                    <exon start="44934" stop="44825"/>
                    <exon start="44714" stop="44628"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMKDPAMQRKEGSSGRPKGTMLEKAIRDLEKIVAELRPPNMEVQDADNSSQAIKRRLPLEIKQRLAKVARLAQASHGKISNELISRLMSIVGHLIQLRTLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54683" PGL_stop="47320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54683" e_stop="54283"/>
            <exon e_start="50509" e_stop="50423"/>
            <exon e_start="50344" e_stop="50252"/>
            <exon e_start="50091" e_stop="50015"/>
            <exon e_start="47435" e_stop="47320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54683" e_stop="54283" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50509" e_stop="50423" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50344" e_stop="50252" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50251" i_stop="50092" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50091" e_stop="50015" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="50014" i_stop="47436" i_length="2579"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="47435" e_stop="47320" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54683" stop="54283"/>
              <exon start="50509" stop="50423"/>
              <exon start="50344" stop="50252"/>
              <exon start="50091" stop="50015"/>
              <exon start="47435" stop="47320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG : GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG : GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG : GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT : TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</gDNA_template>
            <first_frame> F  N  S  K  I  F  S  F  Q  F  G  T  K  F  S  S  S  L  G  F  R  I  S  V  S  L  S  F  P  C  L  H  L  L  N  L  I  H  R  N  P  N  F  V  Y  N  H  Q  W  T  A  A  S  L  V  E  N  R  *  G  G  R  P  R  P  M  K  L  Q  E  D  G  G  G  L  R  W  S  S  G  R  V  R  P  Q  L  C  R  G  R  S  F  S  R  T  L  I  S  L  M  L  M  L  S  V  L  V  Q  R  *  C  R  L  E  L  L  L  A  F  K  L  Q  C  R  I  L  L  S  R  L  D  *  L  R :   D  N  L  L  I  R  K  S  R  M  H  L  L  E  I  V  *  M  L  *  *  K  R  L  N  A  Y  M  W :   A  N  K  V  M  M  R  K  I  L  M  I  S  Q  M  T  M  N  M  T  L  K  I  L  S  *  M  I  L  S  W :   M  N  I  F  R  L  I  T  Q  Q  *  S  M  M  V  S  L  S  I  V  E  S  W  S  A   : L  S  Q  F  H  Q  R  I  S  N  Q  K  R  G  E  E  K  I  W  Q  K  A  M  L  G  M  M  M  D  T  I  Q  V  N  L  *  K  S  E </first_frame>
            <second_frame>  S  I  L  K  F  S  L  F  N  L  V  P  N  F  P  L  L  *  G  F  E  S  V  F  P  S  L  F  H  V  F  I  F  *  I  S  Y  I  V  T  L  I  S  F  T  I  T  N  G  R  R  L  H  W  W  R  T  G  R  E  G  V  H  V  L  *  S  C  R  R  T  A  E  V  Y  G  G  A  Q  A  G  *  D  H  N  C  V  V  E  E  A  S  Q  G  R  *  *  V  *  C  *  C  C  R  F  W  S  N  D  D  A  G  W  S  S  C  *  H  S  N  S  S  A  A  S  C  S  R  G  S  I  S  S   : G  T  T  C  *  *  G  S  Q  G  C  T  S  W  K  S  F  K  C  C  D  R  K  D  *  T  L  I  C   : G  Q  T  K  *  *  *  G  R  S  *  *  F  P  R  *  R  *  I  *  H  *  R  F  F  H  R  *  Y  *  A   : G  *  I  F  S  G  *  *  L  S  N  K  A  *  W  F  L  C  Q  S  W  K  V  G  A  H  :  *  A  S  F  T  K  E  S  A  T  K  K  E  E  K  K  R  S  G  K  K  P  C  W  G  *  *  W  T  Q  S  K  *  T  C  K  S  R   </second_frame>
            <third_frame>   Q  F  *  N  F  L  F  S  I  W  Y  Q  I  F  L  F  F  R  V  S  N  Q  C  F  P  L  F  S  M  S  S  S  S  K  S  H  T  S  *  P  *  F  R  L  Q  S  P  M  D  G  G  F  T  G  G  E  P  V  G  R  A  S  T  S  Y  E  A  A  G  G  R  R  R  F  T  V  E  L  R  P  G  E  T  T  I  V  S  W  K  K  L  L  K  D  A  N  K  S  N  V  N  V  V  G  S  G  P  T  M  M  P  V  G  A  P  A  S  I  Q  T  P  V  P  H  P  A  L  E  A  R  L  A  P  :  G  Q  P  A  D  K  E  V  K  D  A  P  P  G  N  R  L  N  A  V  I  E  K  I  E  R  L  Y  V  :  G  K  Q  S  D  D  E  E  D  L  N  D  F  P  D  D  D  E  Y  D  T  E  D  S  F  I  D  D  T  E  L  :  D  E  Y  F  Q  V  D  N  S  A  I  K  H  D  G  F  F  V  N  R  G  K  L  E  R  I :   E  P  V  S  P  K  N  Q  Q  P  K  K  R  R  R  K  D  L  A  K  S  H  V  G  D  D  D  G  H  N  P  S  K  P  V  K  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54558" stop="54283"/>
                    <exon start="50509" stop="50423"/>
                    <exon start="50344" stop="50252"/>
                    <exon start="50091" stop="50015"/>
                    <exon start="47435" stop="47321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRLQSPMDGGFTGGEPVGRASTSYEAAGGRRRFTVELRPGETTIVSWKKLLKDANKSNVNVVGSGPTMMPVGAPASIQTPVPHPALEARLAPGQPADKEVKDAPPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPVKVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57153" PGL_stop="58407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57153" e_stop="58407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="57153" e_stop="58407" e_length="1255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57153" stop="57767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57749" stop="58407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341304" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTATGAAACTATTGAAAGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</gDNA_template>
            <first_frame> G  K  A  A  F  E  I  F  N  K  F  G  D  L  G  C  A  P  N  A  D  T  Y  Y  F  T  I  E  A  L  S  R  R  S  I  Y  D  W  A  S  T  V  C  E  K  M  L  N  A  D  K  L  P  G  A  E  K  V  G  K  I  V  S  F  L  C  K  G  N  K  C  R  D  A  H  L  V  Y  L  S  A  K  E  K  N  I  N  L  P  V  S  S  I  K  L  L  I  S  S  L  C  R  K  D  E  G  V  K  L  A  M  E  V  L  D  E  F  P  K  E  E  R  K  H  A  I  K  S  F  S  H  V  I  N  G  L  C  R  A  N  D  V  T  G  E  K  Q  L  R  S  Y  C  S  E  D  I  D  E  A  K  N  L  L  L  K  M  I  D  A  G  P  P  P  G  N  A  V  F  N  T  V  I  N  A  L  S  K  K  G  E  M  G  E  A  M  K  L  L  K  V  M  E  G  R  G  L  K  P  D  V  Y  T  Y  S  V  I  M  S  V  I  Q  R  E  V  R  W  R  R  P  A  R  F  *  M  K  P  K  R  S  T  P  V  *  V  P  S  L  F  T  Q  L  F  G  A  I  S  S  S  N  S  M  T  R  L  W  N  Y  W  E  I  *  R  S  M  E  F  S  L  M  R  M  N  I  T  N  L  F  N  L  Y  A  L  R  L  *  I  G  Q  Q  Q  R  N  C  L  R  R  *  R  R  M  G  C  I  *  M  Q  S  Q  R  V  S  *  E  Q  L  R  S  *  N  R  K  K  *  E  Q  M  K  *  R  L  Q  H  S  R  Y  P  I  S  A  F  S  C  R  D  V  S  S  V  S  F  L  C  Y  G  L  R  *  *  Q  A  *  N  C  N  T  C  I  L  Y  D  E  Q  P  L  E  F  L  R  K  D  I  F  F  V  H  F  K  I  M  F  A  A  K  S  L  E  L  N  G  S  S  V  T  K  T  F  K  R  </first_frame>
            <second_frame>  E  R  L  H  L  R  S  S  I  S  L  G  I  *  D  V  H  Q  M  L  I  H  T  I  L  P  L  K  H  F  L  G  D  R  F  M  I  G  L  L  L  F  V  R  R  C  L  M  L  I  S  C  L  V  L  R  K  L  E  R  L  F  L  F  C  V  K  E  I  S  V  E  M  H  I  W  F  I  C  R  Q  R  R  K  I  L  I  C  L  Y  L  L  L  S  C  *  S  A  L  F  V  A  K  M  K  A  L  N  L  Q  W  R  C  W  M  S  S  P  K  K  S  G  S  M  P  L  S  H  S  H  M  S  S  M  G  C  V  G  Q  M  M  *  Q  G  K  S  S  C  V  P  I  A  V  K  T  L  T  R  P  K  T  C  S  *  K  *  *  M  Q  V  H  H  L  A  M  Q  S  L  I  Q  L  L  M  R  S  P  R  R  E  K  W  E  K  L  *  N  Y  *  K  *  W  R  V  E  V  *  N  L  M  C  T  L  I  V  *  S  *  V  L  Y  K  G  R  *  D  G  G  G  L  Q  D  F  E  *  S  Q  K  E  A  L  L  S  K  S  R  H  F  S  H  N  Y  S  G  L  F  Q  A  R  T  V  *  Q  G  S  G  T  I  G  R  Y  E  G  V  W  S  S  A  *  C  G  *  I  *  Q  I  Y  S  I  S  M  P  *  G  F  R  L  D  N  S  R  E  T  A  *  G  D  E  G  E  W  G  A  S  K  C  N  H  K  G  S  H  K  S  S  *  G  V  R  T  G  R  S  R  N  K  *  N  N  G  Y  S  I  V  G  T  L  S  L  P  L  A  V  G  M  Y  L  L  F  L  F  Y  V  M  V  *  D  N  S  R  L  K  T  V  T  P  A  F  C  M  M  N  N  H  *  N  S  *  E  R  I  F  F  L  F  I  L  K  *  C  L  L  P  N  L  L  S  *  M  E  V  P  *  L  R  L  S  K  G </second_frame>
            <third_frame>   K  G  C  I  *  D  L  Q  *  V  W  G  F  R  M  C  T  K  C  *  Y  I  L  F  Y  H  *  S  T  F  *  A  I  D  L  *  L  G  F  Y  C  L  *  E  D  A  *  C  *  *  V  A  W  C  *  E  S  W  K  D  C  F  F  S  V  *  R  K  *  V  *  R  C  T  S  G  L  F  V  G  K  G  E  K  Y  *  S  A  C  I  F  Y  *  V  V  D  Q  L  S  L  S  Q  R  *  R  R  *  T  C  N  G  G  V  G  *  V  P  Q  R  R  A  E  A  C  H  *  V  I  L  T  C  H  Q  W  A  V  *  G  K  *  C  N  R  G  K  A  A  A  F  L  L  Q  *  R  H  *  R  G  Q  K  L  A  L  K  N  D  R  C  R  S  T  T  W  Q  C  S  L  *  Y  S  Y  *  C  A  L  Q  E  G  R  N  G  R  S  Y  E  T  I  E  S  D  G  G  *  R  F  E  T  *  C  V  H  L  *  C  N  H  E  C  Y  T  K  G  G  E  M  E  E  A  C  K  I  L  N  E  A  K  K  K  H  S  C  L  S  P  V  T  F  H  T  I  I  R  G  Y  F  K  L  E  Q  Y  D  K  A  L  E  L  L  G  D  M  K  E  Y  G  V  Q  P  N  A  D  E  Y  N  K  F  I  Q  S  L  C  L  K  A  L  D  W  T  T  A  E  K  L  L  E  E  M  K  E  N  G  V  H  L  N  A  I  T  K  G  L  I  R  A  V  K  E  L  E  Q  E  E  V  G  T  N  E  I  T  A  T  A  *  *  V  P  Y  L  C  L  *  L  *  G  C  I  F  C  F  F  F  M  L  W  S  E  I  I  A  G  L  K  L  *  H  L  H  F  V  *  *  T  T  I  R  I  L  K  K  G  Y  F  F  C  S  F  *  N  N  V  C  C  Q  I  S  *  V  E  W  K  F  R  N  *  D  F  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57153" stop="57851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKAAFEIFNKFGDLGCAPNADTYYFTIEALSRRSIYDWASTVCEKMLNADKLPGAEKVGKIVSFLCKGNKCRDAHLVYLSAKEKNINLPVSSIKLLISSLCRKDEGVKLAMEVLDEFPKEERKHAIKSFSHVINGLCRANDVTGEKQLRSYCSEDIDEAKNLLLKMIDAGPPPGNAVFNTVINALSKKGEMGEAMKLLKVMEGRGLKPDVYTYSVIMSVIQREVRWRRPARF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="68184" PGL_stop="65894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68184" e_stop="67747"/>
            <exon e_start="67614" e_stop="65894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="68184" e_stop="67747" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67746" i_stop="67615" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="67614" e_stop="65894" e_length="1721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68184" stop="67747"/>
              <exon start="67614" stop="65894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334146" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCCCAATTTTTCATAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGT : GTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCAAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAATCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTG</gDNA_template>
            <first_frame> I  I  P  I  F  H  K  Y  N  Q  T  Q  N  K  N  I  T  K  N  K  *  Q  S  I  H  N  S  *  K  K  M  N  S  F  F  F  D  N  G  K  S  K  A  N  *  *  P  L  F  S  N  M  E  *  L  V  V  V  E  M  R  R  R  L  R  L  P  V  G  E  E  Y  F  R  K  M  V  V  V  V  A  E  K  S  K  W  A  G  E  V  M  V  M  V  A  V  V  M  S  S  S  K  W  E  E  E  E  M  V  M  E  V  V  V  M  S  R  C  M  V  V  M  V  L  V  P  N  V  N  *  E  V  E  V  V  V  R  Y  K  V  G  *  V  G  L  G  :  V  M  V  F  L  D  A  R  M  M  V  L  V  V  M  G  F  L  G  V  R  V  M  V  E  F  L  D  A  R  T  T  V  L  V  V  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  V  V  V  G  T  M  E  M  G  G  N  I  Q  V  R  V  E  E  V  N  D  E  L  Q  V  K  F  C  E  *  V  V  V  D  F  Y  V  D  R  L  G  T  F  C  K  V  L  V  E  E  E  E  L  I  *  V  A  A  E  I  A  C  Y  A  N  P  K  T  S  K  *  V  V  V  G  L  L  A  L  V  L  V  L  A  L  S  K  E  M  *  Q  K  G  Y  N  T  W  I  S  Y  N  H  T  V  L  H  H  P  K  S  I  L  *  Q  I  F  D  S  S  F  Q  R  Y  S  S  P  G  R  H  Q  I  *  S  Q  H  K  L  E  L  P  R  *  S  N  *  R  N  T  *  S  F  A  T  *  E  V  G  K  C  *  L  V  *  P  Q  *  A  C  C  E  P  H  S  V  P  P  H  S  S  F  C  S  Q  L  M  A  M  S  L  E  S  C  *  S  *  H  Q  T  R  L  T  C  S  T  I  Q  S  P  L  A  N  T  Q  *  G  Y  H  S  S  I  S  T  H  S  T  F  S  P  F  S  Q  Y  L  R  E  Y  T  L  Q  D  R  Y  *  Q  T  Q  E  P  K  Q  E  S  Y  P  S  S  P  G  C  Q  N  G  I  Y  C  H  S  K  T  T  H  P  N  L  Y  R  K  V  L  K  E  L  V  L  Q  S  H  *  T  L  D  P  K  T  S  K  K  V  V  K  E  L  P  *  E  T  H  Q  Q  T  Y  Y  Y  S  N  Q  A  P  *  E  A  S  N  G  *  R  F  L  V  Q  L  H  K  N  D  S  S  *  D  G  K  E  P  D  L  *  E  D  Q  V  L  Q  L  M  N  Q  Q  Y  Q  H  D  *  D  Q  C  Q  L  Q  L  *  S  N  H  P  L  T  K  E  H  K  T  L  H  H  R  N  T  H  L  D  L  S  N  *  L  *  S  *  K  D  Q  K  T  L  L  F  S  N  T  A  T  R  Y  K  H  R  E  S  L  S  F  Q  N  S  T  Y  *  H  *  P  *  C  H  L  I  R  Y  R  Y  H  L  L  V  L  P  H  T  R  S  G  K  T  K  E  *  *  R  K  K  K  L  I  R  P  G  *  E  A  A  L  L  N  L  I  E  I  F  *  L  *  R  R  K  *  S  F  C  F  F  T  M  C  C  *  M  K  L  I   </first_frame>
            <second_frame>  *  S  Q  F  F  I  N  I  I  K  L  K  I  K  I  L  Q  K  I  N  N  K  V  Y  I  I  H  K  K  K  *  I  L  F  F  L  I  M  E  N  Q  R  L  I  D  N  P  C  S  V  I  W  N  D  W  W  W  W  R  C  V  G  D  S  D  Y  R  W  E  R  N  I  F  V  K  W  W  W  W  W  R  R  R  V  S  G  R  G  R  *  W  *  W  W  R  W  *  *  V  V  V  S  G  R  R  R  R  W  *  W  R  W  W  *  *  V  G  V  W  W  *  W  F  W  F  P  M  *  I  R  R  W  R  W  W  F  V  T  R  W  G  R  W  G  W  V :   *  W  C  F  W  M  L  V  *  W  C  W  W  *  W  G  F  W  V  F  V  *  W  W  S  F  W  M  L  V  R  R  C  W  W  *  W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W  W  W  W  G  R  W  R  W  V  V  I  Y  R  *  G  W  R  R  *  M  M  S  Y  R  *  N  F  V  S  R  W  W  W  T  S  M  L  I  G  W  G  L  F  V  R  C  W  W  R  K  R  S  *  F  R  W  R  R  R  S  L  V  M  R  T  R  R  L  P  S  R  W  W  W  A  S  W  L  W  F  W  F  W  L  C  R  R  R  C  S  K  R  A  I  T  L  G  F  P  T  I  I  R  F  C  I  I  R  R  A  F  F  S  R  S  L  I  L  L  S  N  D  T  V  L  L  A  V  T  R  S  S  R  S  T  N  W  S  F  P  G  E  V  I  E  G  I  R  K  V  L  Q  P  R  K  L  A  N  A  S  W  Y  N  P  S  K  L  V  V  S  H  I  Q  F  L  H  T  P  H  F  A  H  S  *  W  Q  *  A  L  N  L  V  E  A  N  I  K  H  G  *  L  V  Q  Q  S  N  L  H  W  Q  T  P  S  E  V  I  I  H  Q  Y  Q  L  I  Q  R  F  P  H  F  P  N  T  C  G  N  T  P  S  K  I  V  I  S  K  H  K  N  R  N  R  R  V  T  Q  V  L  R  D  A  K  T  E  S  I  V  I  Q  K  Q  R  I  Q  I  F  I  E  K  S  *  R  N  W  S  F  K  V  I  K  P  *  I  Q  K  L  Q  R  R  *  *  K  N  Y  L  R  K  P  T  N  K  P  I  I  T  Q  I  K  L  P  K  K  L  Q  M  A  K  G  F  W  Y  N  S  T  K  T  I  R  V  E  M  E  K  N  Q  I  C  K  K  T  K  F  C  N  *  *  T  S  N  I  S  M  I  K  I  N  A  S  Y  N  S  N  R  I  I  H  *  R  R  S  T  K  H  S  T  I  G  T  H  I  W  T  C  P  I  S  C  E  V  K  R  I  R  K  H  C  C  F  P  I  L  Q  R  D  I  S  I  A  N  P  *  V  F  K  T  Q  L  T  S  I  S  L  N  V  I  *  S  D  I  A  I  T  F  L  S  Y  H  I  R  D  L  V  R  Q  K  S  N  N  E  K  R  N  *  Y  A  P  A  R  R  P  H  C  *  I  *  *  R  F  S  S  Y  E  E  E  N  E  V  F  V  F  S  Q  C  V  V  E  *  N  *  F  </second_frame>
            <third_frame>   N  P  N  F  S  *  I  *  S  N  S  K  *  K  Y  Y  K  K  *  I  T  K  Y  T  *  F  I  K  K  N  E  F  F  F  F  *  *  W  K  I  K  G  *  L  I  T  L  V  Q  *  Y  G  M  T  G  G  G  G  D  A  *  E  T  P  I  T  G  G  R  G  I  F  S  *  N  G  G  G  G  G  G  E  E  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  *  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  V  Y  G  G  D  G  F  G  S  Q  C  E  L  G  G  G  G  G  G  S  L  Q  G  G  V  G  G  V  G   : C  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  C  D  G  G  V  F  G  C  S  Y  D  G  V  G  G  S  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T  G  G  G  G  D  D  G  D  G  W  *  Y  T  G  E  G  G  G  G  E  *  *  V  T  G  E  I  L  *  V  G  G  G  G  L  L  C  *  *  V  G  D  F  L  *  G  A  G  G  G  R  G  V  D  L  G  G  G  G  D  R  L  L  C  E  P  E  D  F  Q  V  G  G  G  G  P  L  G  F  G  F  G  F  G  F  V  E  G  D  V  A  K  G  L  *  H  L  D  F  L  Q  S  Y  G  F  A  S  S  E  E  H  S  L  A  D  L  *  F  F  F  P  T  I  Q  F  S  W  P  S  P  D  L  V  A  A  Q  T  G  A  S  P  V  K  *  L  K  E  Y  V  K  F  C  N  L  G  S  W  Q  M  L  A  G  I  T  P  V  S  L  L  *  A  T  F  S  S  S  T  L  L  I  L  L  T  V  D  G  N  E  P  *  I  L  L  K  L  T  S  N  T  V  N  L  F  N  N  P  I  S  I  G  K  H  P  V  R  L  S  F  I  N  I  N  S  F  N  V  F  P  I  F  P  I  L  A  G  I  H  P  P  R  S  L  L  A  N  T  R  T  E  T  G  E  L  P  K  F  S  G  M  P  K  R  N  L  L  S  F  K  N  N  A  S  K  S  L  S  K  S  P  E  G  T  G  P  S  K  S  L  N  L  R  S  K  N  F  K  E  G  S  E  R  T  T  L  G  N  P  P  T  N  L  L  L  L  K  S  S  S  L  R  S  F  K  W  L  K  V  F  G  T  T  P  Q  K  R  F  E  L  R  W  K  R  T  R  S  V  R  R  P  S  S  A  T  N  E  P  A  I  S  A  *  L  R  S  M  P  A  T  T  L  I  E  S  S  I  N  E  G  A  Q  N  T  P  P  *  E  H  T  F  G  P  V  Q  L  A  V  K  L  K  G  S  E  N  I  A  V  F  Q  Y  C  N  A  I  *  A  S  R  I  L  E  F  S  K  L  N  L  L  A  L  A  L  M  S  S  N  P  I  S  L  S  P  S  C  P  T  T  Y  E  I  W  *  D  K  R  V  I  T  K  K  E  I  N  T  P  R  L  G  G  R  I  A  E  S  D  R  D  F  L  A  M  K  K  K  M  K  F  L  F  F  H  N  V  L  L  N  E  I  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66820" stop="66308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKLTSNTVNLFNNPISIGKHPVRLSFININSFNVFPIFPILAGIHPPRSLLANTRTETGELPKFSGMPKRNLLSFKNNASKSLSKSPEGTGPSKSLNLRSKNFKEGSERTTLGNPPTNLLLLKSSSLRSFKWLKVFGTTPQKRFELRWKRTRSVRRPSSATNEPAISA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67229" stop="66837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRWRRRSLVMRTRRLPSRWWWASWLWFWFWLCRRRCSKRAITLGFPTIIRFCIIRRAFFSRSLILLSNDTVLLAVTRSSRSTNWSFPGEVIEGIRKVLQPRKLANASWYNPSKLVVSHIQFLHTPHFAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67834" stop="67747"/>
                    <exon start="67614" stop="67439"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYGGDGFGSQCELGGGGGGSLQGGVGGVGCDGVFGCSYDGVGGDGVFGCSCDGGVFGCSYDGVGGSGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67998" e_stop="67663"/>
            <exon e_start="67612" e_stop="67272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.958"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="67998" e_stop="67663" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67662" i_stop="67613" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="67612" e_stop="67272" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67998" stop="67663"/>
              <exon start="67612" stop="67272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTG : GATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGT</gDNA_template>
            <first_frame> R  L  R  L  P  V  G  E  E  Y  F  R  K  M  V  V  V  V  A  E  K  S  K  W  A  G  E  V  M  V  M  V  A  V  V  M  S  S  S  K  W  E  E  E  E  M  V  M  E  V  V  V  M  S  R  C  M  V  V  M  V  L  V  P  N  V  N  *  E  V  E  V  V  V  R  Y  K  V  G  *  V  G  L  G  V  M  E  F  L  G  V  R  M  M  V  L  V  V  V  V  V  I  G  V  V  D  A  R  M  M  V  L  :  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  C  D  G  G  V  F  G  C  S  Y  D  G  V  G  G  S  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T  G  G  G  G  D  D  G  D  G  W  *  Y  T  G  E  G  G  G  G  E  *  *  V  T  G  E  I  L  *  V  G  G  G  G  L  L  C  *  *   </first_frame>
            <second_frame>  D  S  D  Y  R  W  E  R  N  I  F  V  K  W  W  W  W  W  R  R  R  V  S  G  R  G  R  *  W  *  W  W  R  W  *  *  V  V  V  S  G  R  R  R  R  W  *  W  R  W  W  *  *  V  G  V  W  W  *  W  F  W  F  P  M  *  I  R  R  W  R  W  W  F  V  T  R  W  G  R  W  G  W  V  *  W  S  F  W  V  F  V  *  W  C  W  W  W  W  W  *  L  G  L  W  M  L  V  *  W  C  W :   M  V  F  L  D  A  R  M  M  V  L  V  V  M  G  F  L  G  V  R  V  M  V  E  F  L  D  A  R  T  T  V  L  V  V  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  V  V  V  G  T  M  E  M  G  G  N  I  Q  V  R  V  E  E  V  N  D  E  L  Q  V  K  F  C  E  *  V  V  V  D  F  Y  V  D  R  </second_frame>
            <third_frame>   T  P  I  T  G  G  R  G  I  F  S  *  N  G  G  G  G  G  G  E  E  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  *  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  V  Y  G  G  D  G  F  G  S  Q  C  E  L  G  G  G  G  G  G  S  L  Q  G  G  V  G  G  V  G  C  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  W  G  C  G  C  S  Y  D  G  V   : G  W  C  F  W  M  L  V  *  W  C  W  W  *  W  G  F  W  V  F  V  *  W  W  S  F  W  M  L  V  R  R  C  W  W  *  W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W  W  W  W  G  R  W  R  W  V  V  I  Y  R  *  G  W  R  R  *  M  M  S  Y  R  *  N  F  V  S  R  W  W  W  T  S  M  L  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67758" stop="67663"/>
                    <exon start="67612" stop="67439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLGVMEFLGVRMMVLVVVVVIGVVDARMMVLDGVFGCSYDGVGGDGVFGCSCDGGVFGCSYDGVGGSGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67998" stop="67795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRLPVGEEYFRKMVVVVAEKSKWAGEVMVMVAVVMSSSKWEEEEMVMEVVVMSRCMVVMVLVPNVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67834" stop="67663"/>
                    <exon start="67612" stop="67587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYGGDGFGSQCELGGGGGGSLQGGVGGVGCDGVFGCSYDGVGGGGGDWGCGCSYDGVGWCFWMLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66035" PGL_stop="68111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66035" e_stop="67304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="66035" e_stop="67304" e_length="1270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66035" stop="67304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</gDNA_template>
            <first_frame> V  L  P  D  L  V  C  G  R  T  R  R  *  *  R  Y  R  I  R  *  H  *  G  *  C  *  *  V  E  F  *  K  L  K  D  S  R  C  L  Y  R  V  A  V  L  E  N  S  N  V  F  *  S  F  *  L  H  S  *  L  D  R  S  K  C  V  F  L  W  W  S  V  L  C  S  F  V  N  G  *  F  D  *  S  C  S  W  H  *  S  *  S  C  *  Y  C  W  F  I  S  C  R  T  W  S  S  Y  R  S  G  S  F  P  S  Q  L  E  S  F  L  W  S  C  T  K  N  L  *  P  F  E  A  S  *  G  A  *  F  E  *  *  *  V  C  W  W  V  S  *  G  S  S  F  T  T  F  F  E  V  F  G  S  K  V  *  *  L  *  R  T  S  S  F  R  T  F  R  *  R  F  G  C  V  V  F  E  *  Q  *  I  P  F  W  H  P  G  E  L  G  *  L  S  C  F  G  S  C  V  C  *  *  R  S  W  R  V  Y  S  R  K  Y  W  E  N  G  E  N  V  E  *  V  D  I  D  E  *  *  P  H  W  V  F  A  N  G  D  W  I  V  E  Q  V  N  R  V  *  C  *  L  Q  Q  D  S  R  L  I  A  I  N  C  E  Q  N  E  E  C  G  G  T  E  C  G  S  Q  Q  A  Y  W  G  Y  T  S  *  H  L  P  T  S  *  V  A  K  L  Y  V  F  L  Q  L  L  H  R  G  S  S  S  L  C  C  D  *  I  W  *  R  P  G  E  L  Y  R  W  K  E  E  S  K  I  C  *  R  M  L  F  G  *  C  K  T  V  *  L  *  E  I  Q  V  L  *  P  F  C  Y  I  S  F  D  K  A  K  T  K  T  K  A  K  R  P  T  T  T  Y  L  E  V  F  G  F  A  *  Q  A  I  S  A  A  T  *  I  N  S  S  S  S  T  S  T  L  Q  K  V  P  N  L  S  T  *  K  S  T  T  T  Y  </first_frame>
            <second_frame>  S  Y  Q  I  S  Y  V  V  G  Q  E  G  D  S  D  I  G  L  D  D  I  K  A  N  A  S  K  L  S  F  E  N  S  R  I  R  D  A  Y  I  A  L  Q  Y  W  K  T  A  M  F  S  D  P  F  N  F  T  A  N  W  T  G  P  N  V  C  S  Y  G  G  V  F  C  A  P  S  L  M  D  D  S  I  R  V  V  A  G  I  D  L  N  H  A  D  I  A  G  S  L  V  A  E  L  G  L  L  T  D  L  V  L  F  H  L  N  S  N  R  F  C  G  V  V  P  K  T  F  S  H  L  K  L  L  R  E  L  D  L  S  N  N  R  F  V  G  G  F  P  K  V  V  L  S  L  P  S  L  K  F  L  D  L  R  F  N  D  F  E  G  P  V  P  S  G  L  F  D  K  D  L  D  A  L  F  L  N  D  N  R  F  R  F  G  I  P  E  N  L  G  N  S  P  V  S  V  L  V  F  A  N  N  D  L  G  G  C  I  P  A  S  I  G  K  M  G  K  T  L  N  E  L  I  L  M  N  D  N  L  T  G  C  L  P  M  E  I  G  L  L  N  K  L  T  V  F  D  V  S  F  N  K  I  Q  G  S  L  P  S  T  V  S  K  M  R  S  V  E  E  L  N  V  A  H  N  K  L  T  G  V  I  P  A  S  I  C  Q  L  P  R  L  Q  N  F  T  Y  S  F  N  Y  F  T  G  E  A  P  V  C  A  A  T  R  S  G  D  G  Q  E  N  C  I  V  G  K  K  N  Q  R  S  A  K  E  C  S  S  D  D  A  K  P  Y  D  C  R  K  S  K  C  Y  S  P  F  A  T  S  P  S  T  K  P  K  P  K  P  K  P  R  G  P  P  P  P  T  W  K  S  S  G  S  H  N  K  R  S  P  P  P  P  K  S  T  P  L  P  P  P  A  P  Y  K  K  S  P  T  Y  Q  H  R  S  P  P  P  P  T </second_frame>
            <third_frame>   L  T  R  S  R  M  W  *  D  K  K  V  I  A  I  S  D  *  M  T  L  R  L  M  L  V  S  *  V  L  K  T  Q  G  F  A  M  L  I  S  R  C  S  I  G  K  Q  Q  C  F  L  I  L  L  T  S  Q  L  I  G  Q  V  Q  M  C  V  P  M  V  E  C  F  V  L  L  R  *  W  M  I  R  L  E  L  *  L  A  L  I  L  I  M  L  I  L  L  V  H  *  L  Q  N  L  V  F  L  Q  I  W  F  F  S  I  S  T  R  I  V  F  V  E  L  Y  Q  K  P  L  A  I  *  S  F  L  G  S  L  I  *  V  I  I  G  L  L  V  G  F  L  R  *  F  F  H  Y  L  L  *  S  F  W  I  *  G  L  M  T  L  K  D  Q  F  L  Q  D  F  S  I  K  I  W  M  R  C  F  *  M  T  I  D  S  V  L  A  S  R  R  T  W  V  T  L  L  F  R  F  L  C  L  L  I  T  I  L  E  G  V  F  P  Q  V  L  G  K  W  G  K  R  *  M  S  *  Y  *  *  M  I  T  S  L  G  V  C  Q  W  R  L  D  C  *  T  S  *  P  C  L  M  L  A  S  T  R  F  K  A  H  C  H  Q  L  *  A  K  *  G  V  W  R  N  *  M  W  L  T  T  S  L  L  G  L  Y  Q  L  A  F  A  N  F  L  G  C  K  T  L  R  I  P  S  I  T  S  P  G  K  L  Q  F  V  L  R  L  D  L  V  T  A  R  R  T  V  S  L  E  R  R  I  K  D  L  L  K  N  A  L  R  M  M  Q  N  R  M  I  V  G  N  P  S  V  I  A  L  L  L  H  L  L  R  Q  S  Q  N  Q  N  Q  S  Q  E  A  H  H  H  L  L  G  S  L  R  V  R  I  T  S  D  L  R  R  H  L  N  Q  L  L  F  L  H  Q  H  L  T  K  S  P  Q  P  I  N  I  E  V  H  H  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66036" stop="67304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYQISYVVGQEGDSDIGLDDIKANASKLSFENSRIRDAYIALQYWKTAMFSDPFNFTANWTGPNVCSYGGVFCAPSLMDDSIRVVAGIDLNHADIAGSLVAELGLLTDLVLFHLNSNRFCGVVPKTFSHLKLLRELDLSNNRFVGGFPKVVLSLPSLKFLDLRFNDFEGPVPSGLFDKDLDALFLNDNRFRFGIPENLGNSPVSVLVFANNDLGGCIPASIGKMGKTLNELILMNDNLTGCLPMEIGLLNKLTVFDVSFNKIQGSLPSTVSKMRSVEELNVAHNKLTGVIPASICQLPRLQNFTYSFNYFTGEAPVCAATRSGDGQENCIVGKKNQRSAKECSSDDAKPYDCRKSKCYSPFATSPSTKPKPKPKPRGPPPPTWKSSGSHNKRSPPPPKSTPLPPPAPYKKSPTYQHRSPPPPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66408" e_stop="66545"/>
            <exon e_start="67392" e_stop="68111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66408" e_stop="66545" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66546" i_stop="67391" i_length="846"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="67392" e_stop="68111" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66408" stop="66545"/>
              <exon start="67392" stop="68111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCA : GTTTATTATTCTCCACCACCCCCCGTGTATCATGAGCCACCACCTACTTACAAGCCTAAATCACCACCACCACCACCAACACCGTCGTATGAACATCCAAAAACTCCATCACCACTACCACCAACACCGTCGTACGAGCATCCAAAAACTCCACCATCACACGAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</gDNA_template>
            <first_frame> K  T  F  S  H  L  K  L  L  R  E  L  D  L  S  N  N  R  F  V  G  G  F  P  K  V  V  L  S  L  P  S  L  K  F  L  D  L  R  F  N  D  F  E  G  P  :  V  Y  Y  S  P  P  P  P  V  Y  H  E  P  P  P  T  Y  K  P  K  S  P  P  P  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  L  P  P  T  P  S  Y  E  H  P  K  T  P  P  S  H  E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  P  P  T  P  S  Y  E  H  P  Q  P  Q  S  P  P  P  P  P  T  P  S  Y  E  H  P  K  T  P  S  H  P  T  P  P  T  P  P  C  N  E  P  P  P  P  P  P  N  S  H  W  E  P  K  P  S  P  P  Y  T  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  Y  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  S  S  P  P  P  P  P  P  F  Y  E  N  I  P  L  P  P  V  I  G  V  S  Y  A  S  P  P  P  P  V  I  P  Y  Y  *  T  R  V  I  N  *  P  L  I  F  H  Y  Q  K  K  K  N  S  F  F  F  M  N  Y </first_frame>
            <second_frame>  K  P  L  A  I  *  S  F  L  G  S  L  I  *  V  I  I  G  L  L  V  G  F  L  R  *  F  F  H  Y  L  L  *  S  F  W  I  *  G  L  M  T  L  K  D  Q :   F  I  I  L  H  H  P  P  C  I  M  S  H  H  L  L  T  S  L  N  H  H  H  H  H  Q  H  R  R  M  N  I  Q  K  L  H  H  H  Y  H  Q  H  R  R  T  S  I  Q  K  L  H  H  H  T  N  T  Q  K  P  H  H  H  Q  H  H  H  T  S  I  Q  K  H  H  H  H  Q  H  H  H  T  S  I  Q  K  P  H  H  H  H  H  Q  H  H  H  T  S  I  H  N  P  N  H  H  H  H  H  Q  H  H  H  T  N  T  Q  K  L  H  H  T  Q  P  H  L  P  H  L  V  T  N  H  H  L  H  L  L  I  H  I  G  N  Q  N  H  H  H  H  T  P  T  H  H  H  H  L  H  H  H  L  L  L  L  P  L  T  T  T  H  H  H  R  H  H  H  H  H  L  P  R  P  L  T  L  L  R  H  H  H  H  H  F  T  K  I  F  L  S  H  R  *  S  E  S  P  T  H  L  H  H  H  Q  S  F  H  I  T  E  Q  G  L  S  I  S  L  *  F  S  I  I  K  K  K  R  I  H  F  F  L  *  I   </second_frame>
            <third_frame>   N  L  *  P  F  E  A  S  *  G  A  *  F  E  *  *  *  V  C  W  W  V  S  *  G  S  S  F  T  T  F  F  E  V  F  G  S  K  V  *  *  L  *  R  T   : S  L  L  F  S  T  T  P  R  V  S  *  A  T  T  Y  L  Q  A  *  I  T  T  T  T  T  N  T  V  V  *  T  S  K  N  S  I  T  T  T  T  N  T  V  V  R  A  S  K  N  S  T  I  T  R  T  P  K  N  P  I  T  T  N  T  I  I  R  A  S  K  N  T  I  T  T  N  T  I  I  R  A  S  K  N  P  I  T  T  T  T  N  T  I  I  R  A  S  T  T  P  I  T  T  T  T  T  N  T  I  I  R  T  P  K  N  S  I  T  P  N  P  T  Y  P  T  L  *  R  T  T  T  S  T  S  *  F  T  L  G  T  K  T  I  T  T  I  H  L  L  I  T  T  T  S  I  T  I  S  S  S  S  H  L  L  L  L  I  T  T  A  T  I  T  I  T  S  P  A  H  L  L  F  S  A  T  T  T  T  I  L  R  K  Y  S  S  P  T  G  N  R  S  L  L  R  I  S  T  T  T  S  H  S  I  L  L  N  K  G  Y  Q  L  A  F  D  F  P  L  S  K  K  K  E  F  I  F  F  Y  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66408" stop="66545"/>
                    <exon start="67392" stop="68039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFSHLKLLRELDLSNNRFVGGFPKVVLSLPSLKFLDLRFNDFEGPVYYSPPPPVYHEPPPTYKPKSPPPPPTPSYEHPKTPSPLPPTPSYEHPKTPPSHEHPKTPSPPTPSYEHPKTPSPPTPSYEHPKTPSPPPPTPSYEHPQPQSPPPPPTPSYEHPKTPSHPTPPTPPCNEPPPPPPNSHWEPKPSPPYTYSSPPPPSPSPPPPTYYYSSPPPPSPSPPPPTYSSPPPPPPFYENIPLPPVIGVSYASPPPPVIPYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74885" PGL_stop="75390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74885" e_stop="75390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="74885" e_stop="75390" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74885" stop="75390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGA</gDNA_template>
            <first_frame> D  L  I  A  S  Q  F  E  P  V  C  K  N  P  N  F  R  V  R  Y  G  I  G  F  R  Q  S  *  P  V  H  W  R  N  T  E  P  S  A  N  R  Q  R  A  S  S  Q  M  D  F  D  E  Y  D  Y  L  E  K  T  V  E  E  T  N  G  T  S  T  K  S  K  D  K  D  N  N  S  S  A  E  K  E  K  S  E  K  G  Y  R  R  R  E  R  D  G  S  E  E  Y  A  D  D  D  N  R  E  R  R  S  S  K  K  S  R  G  D  G  E  S  I  R  E  K  D  K  E  R  D  R  E  R  S  S  R  H  R  S  R  E  R  E  S  E  R  D  K  E  R  S  S  K  D  R  D  R  D  R  E  K  R  E  K  E  K  E  K  E  R   </first_frame>
            <second_frame>  T  *  *  P  L  S  L  N  Q  F  A  K  T  L  I  S  E  F  A  T  V  *  G  S  V  K  A  N  Q  Y  T  G  G  T  P  S  H  R  P  T  G  R  E  H  H  R  K  W  T  S  T  S  T  I  I  W  R  R  L  W  K  R  P  T  V  L  L  R  R  A  K  T  K  T  I  T  A  A  P  R  R  R  R  A  R  K  A  I  V  E  G  R  E  M  E  V  R  N  T  P  T  T  T  I  E  S  A  G  A  A  K  S  L  A  G  T  A  K  A  S  E  R  R  I  R  R  E  I  G  K  G  H  R  G  I  G  V  G  N  G  N  L  R  G  T  K  K  E  A  Q  K  T  V  T  V  T  E  R  K  G  K  R  R  K  R  K  R  G  </second_frame>
            <third_frame>   L  D  S  L  S  V  *  T  S  L  Q  K  P  *  F  Q  S  S  L  R  Y  R  V  P  S  K  L  T  S  T  L  A  E  H  R  A  I  G  Q  P  A  E  S  I  I  A  N  G  L  R  R  V  R  L  S  G  E  D  C  G  R  D  Q  R  Y  F  Y  E  E  Q  R  Q  R  Q  *  Q  Q  R  R  E  G  E  E  R  E  R  L  S  S  K  G  E  R  W  K  *  G  I  R  R  R  R  Q  *  R  A  P  E  Q  Q  K  V  S  R  G  R  R  K  H  Q  R  E  G  *  G  E  R  *  G  K  V  I  E  A  S  E  *  G  T  G  I  *  E  G  Q  R  K  K  L  K  R  P  *  P  *  Q  R  E  K  G  K  G  E  R  E  R  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74952" stop="75389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSVKANQYTGGTPSHRPTGREHHRKWTSTSTIIWRRLWKRPTVLLRRAKTKTITAAPRRRRARKAIVEGREMEVRNTPTTTIESAGAAKSLAGTAKASERRIRREIGKGHRGIGVGNGNLRGTKKEAQKTVTVTERKGKRRKRKRG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74969" stop="75388"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVHWRNTEPSANRQRASSQMDFDEYDYLEKTVEETNGTSTKSKDKDNNSSAEKEKSEKGYRRRERDGSEEYADDDNRERRSSKKSRGDGESIREKDKERDRERSSRHRSRERESERDKERSSKDRDRDREKREKEKEKER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="75515" PGL_stop="77102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75515" e_stop="75588"/>
            <exon e_start="76117" e_stop="76214"/>
            <exon e_start="76353" e_stop="77102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75515" e_stop="75588" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="75589" i_stop="76116" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76117" e_stop="76214" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76215" i_stop="76352" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="76353" e_stop="77102" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75515" stop="75588"/>
              <exon start="76117" stop="76214"/>
              <exon start="76353" stop="76618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76618" stop="77102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG : ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG : GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGCTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</gDNA_template>
            <first_frame> S  R  I  E  R  E  R  E  K  E  M  L  R  D  S  E  R  D  F  E  S  R  D  S  R :   W  I  V  S  T  S  *  W  A  N  N  A  E  T  L  Q  G  S  I  E  E  V  A  Y  S  H  I  Y  *  V  *  *   : G  W  Q  S  I  W  C  E  A  V  S  V  F  Q  P  F  L  L  F  E  D  E  N  T  L  T  L  Y  V  I  L  F  L  *  K  Q  G  K  V  S  K  F  W  C  W  A  A  Y  N  V  T  T  H  T  A  F  I  F  L  T  *  R  C  F  E  S  S  N  Y  L  L  E  F  A  L  F  V  L  V  F  F  F  S  G  N  V  A  F  C  W  W  L  D  F  Y  L  L  P  V  *  I  Y  K  M  K  L  I  G  G  H  *  A  F  M  R  R  S  C  Y  I  H  L  N  K  *  I  N  E  V  C  I  F  Y  *  P  I  G  L  S  K  T  L  E  S  C  *  L  F  P  H  L  S  P  K  G  L  P  *  *  S  I  L  L  Q  *  L  L  H  L  I  E  K  R  *  N  L  A  Q  Q  G  R  L  *  R  M  M  I  P  H  V  I  M  *  F  V  E  C  P  C  I  Y  A  S  L  V  E  L  *  C  L  *  *  L  I  T  F  N  V  A  G  A  T  *  S  T  *  N  E  N  P  L  P  T  M  C  N  L  N  F  T  T  R  A  S  Y  F  F  V  L  Y  </first_frame>
            <second_frame>  R  E  S  S  E  S  E  R  K  R  C  *  E  T  A  S  V  T  L  N  H  G  T  A   : D  G  L  F  P  H  L  N  G  L  T  M  R  K  P  F  K  A  R  L  K  K  W  L  I  P  T  Y  I  E  Y  D  K  :  V  G  K  A  Y  G  V  R  L  Y  Q  F  F  N  L  F  F  C  S  K  T  K  I  H  *  P  Y  M  S  F  F  F  C  E  S  R  E  K  S  Q  N  F  G  A  G  Q  R  I  M  S  Q  H  I  L  H  S  Y  S  *  L  E  D  A  S  K  V  Q  I  I  F  *  N  L  L  Y  L  Y  L  F  S  F  S  L  G  M  L  R  F  A  G  G  W  I  S  I  C  F  L  F  R  Y  I  R  *  N  S  L  G  V  I  E  H  L  *  G  D  R  A  I  F  T  *  T  S  R  *  M  K  F  A  F  S  T  S  L  L  V  Y  P  K  L  *  N  L  V  D  F  F  H  I  C  L  Q  R  A  C  L  D  D  L  S  C  C  S  S  Y  S  I  *  L  R  R  G  E  I  *  H  S  K  G  G  F  R  G  *  *  F  L  M  S  *  C  N  L  *  N  V  H  V  F  M  Q  V  W  L  S  F  D  V  Y  S  S  *  L  P  S  M  *  Q  V  L  H  K  V  L  E  M  K  I  H  S  L  L  C  A  T  *  I  L  Q  P  E  P  H  I  F  S  F  F  T </second_frame>
            <third_frame>   E  N  R  A  R  A  R  E  R  D  V  E  R  Q  R  A  *  L  *  I  T  G  Q  Q  :  M  D  C  F  H  I  L  M  G  *  Q  C  G  N  P  S  R  L  D  *  R  S  G  L  F  P  H  I  L  S  M  I  R :   L  A  K  H  M  V  *  G  C  I  S  F  S  T  F  S  S  V  R  R  R  K  Y  I  N  P  I  C  H  S  F  F  V  K  A  G  K  S  L  K  I  L  V  L  G  S  V  *  C  H  N  T  Y  C  I  H  I  L  N  L  K  M  L  R  K  F  K  L  S  S  R  I  C  S  I  C  T  C  F  L  F  L  W  E  C  C  V  L  L  V  V  G  F  L  F  A  S  C  L  D  I  *  D  E  T  H  W  G  S  L  S  I  Y  E  E  I  V  L  Y  S  P  K  Q  V  D  K  *  S  L  H  F  L  L  A  Y  W  S  I  Q  N  F  R  I  L  L  T  F  S  T  F  V  S  K  G  L  A  L  M  I  Y  P  A  A  V  A  T  P  S  N  *  E  E  V  K  F  S  T  A  R  E  A  L  E  D  D  D  S  S  C  H  N  V  I  C  R  M  S  M  Y  L  C  K  F  G  *  A  L  M  F  I  V  V  D  Y  L  Q  C  S  R  C  Y  I  K  Y  L  K  *  K  S  T  P  Y  Y  V  Q  L  K  F  Y  N  Q  S  L  I  F  F  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75552" stop="75588"/>
                    <exon start="76117" stop="76214"/>
                    <exon start="76353" stop="76427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETASVTLNHGTADGLFPHLNGLTMRKPFKARLKKWLIPTYIEYDKVGKAYGVRLYQFFNLFFCSKTKIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="82888" PGL_stop="84347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82888" e_stop="82986"/>
            <exon e_start="83107" e_stop="83195"/>
            <exon e_start="83380" e_stop="83494"/>
            <exon e_start="84054" e_stop="84347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82888" e_stop="82986" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83107" e_stop="83195" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83380" e_stop="83494" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="84054" e_stop="84347" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82888" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</gDNA_template>
            <first_frame> M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  G  A  I  *  N  V  *  R  L  L  I  C  L  L  *  L  Q  *  C  S  *  F  C  N  L  S  W  D  T  K  D  S  L  K  F  L  I  P  G  Q  M  R  L  *  V  V  *  F  *  H  S  I  L  I  L  V  N  C  H  L  W  N  S  F  V  F  F  F  G  N  L  I  D  E  I  *  V  C  L  L  L  E  N </first_frame>
            <second_frame>  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W  E  P  S  K  M  S  E  D  C  *  F  V  Y  C  N  C  N  S  A  A  D  F  V  I  *  V  G  I  P  K  T  R  *  S  S  L  Y  P  D  R  *  G  Y  R  L  C  N  F  D  T  V  F  S  F  *  S  T  V  T  Y  G  I  H  L  Y  F  F  L  A  T  *  L  M  R  F  K  C  V  C  Y  W  K   </second_frame>
            <third_frame>   A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D  G  S  H  L  K  C  L  K  T  A  D  L  F  I  V  I  A  I  V  Q  L  I  L  *  F  K  L  G  Y  Q  R  L  V  K  V  P  Y  T  R  T  D  E  V  I  G  C  V  I  L  T  Q  Y  S  H  F  S  Q  L  S  L  M  E  F  I  C  I  F  F  W  Q  L  D  *  *  D  L  S  V  F  A  I  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82888" stop="82986"/>
                    <exon start="83107" stop="83195"/>
                    <exon start="83380" stop="83494"/>
                    <exon start="84054" stop="84095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90750" PGL_stop="91807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90750" e_stop="91807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="90750" e_stop="91807" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90750" stop="91807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</gDNA_template>
            <first_frame> F  V  L  R  P  N  S  G  V  *  S  G  N  P  V  *  G  V  G  F  *  G  R  V  I  T  M  E  W  L  W  S  M  T  *  R  K  K  C  P  F  S  S  V  M  S  M  V  V  D  G  F  G  A  L  T  I  V  S  R  I  R  F  W  V  H  P  D  P  M  T  E  P  C  K  C  G  T  R  G  A  V  T  V  A  S  V  *  L  W  Y  N  L  P  K  G  I  V  H  P  C  V  A  S  N  L  I  R  S  K  V  Q  S  *  P  L  D  A  L  T  G  G  S  T  R  M  I  *  G  K  C  L  T  H  S  L  S  W  M  D  M  R  K  Q  L  L  T  L  D  L  L  M  N  V  L  L  F  L  R  A  *  M  V  V  *  K  C  G  M  R  R  T  R  R  S  F  A  P  T  R  G  I  V  I  V  G  G  L  *  G  Y  R  Y  G  N  R  V  D  *  F  V  V  A  Q  K  I  I  K  F  L  Y  T  I  K  D  G  V  N  Q  Y  G  C  M  D  A  N  Q  D  M  S  M  G  S  L  V  A  Y  V  G  N  K  R  T  K  I  N  A  H  S  *  L  E  I  Q  M  V  F  Y  E  F  L  M  A  R  G  N  D  Y  I  Y  I  F  T  Q  N  P  V  K  D  E  V  S  A  K  C  V  I  L  F  H  E  K  S  I  V  A  N  T  T  R  *  H  I  F  F  F  L  F  Q  L  F  F  *  L  I  Q  E  L  E  E  L  F  T  I  Y  I  C  L  K  *  I  D  R  G  Y  D  S  I  E  K  Y  L  K  K  F  K  L  Q  M  L  Y  S   </first_frame>
            <second_frame>  L  Y  S  G  Q  T  R  E  Y  K  V  E  T  R  F  R  E  S  G  F  R  V  G  *  L  R  W  S  G  Y  G  V  *  P  R  E  K  N  A  R  F  R  A  *  *  A  W  W  *  T  G  L  E  H  *  L  L  S  V  G  S  G  F  G  C  I  R  I  R  *  R  N  H  A  N  V  G  P  A  V  R  *  Q  W  Q  V  F  S  Y  G  T  T  Y  Q  R  V  *  Y  T  R  V  L  R  R  I  *  S  V  Q  R  S  N  R  S  R  W  M  R  *  P  E  G  L  R  V  *  Y  E  E  N  A  *  P  T  L  C  P  G  W  T  *  E  S  S  Y  L  H  *  I  C  *  *  T  Y  Y  Y  F  F  E  H  R  W  L  F  K  N  V  E  C  G  G  P  E  G  P  S  H  L  Q  G  A  *  *  *  *  E  V  C  R  V  I  G  M  E  T  G  W  I  N  L  L  W  L  R  K  *  S  S  F  C  I  R  *  K  M  G  *  T  N  M  D  V  W  T  R  T  K  T  *  A  W  V  R  *  *  R  M  L  A  T  K  G  R  K  S  M  H  T  R  S  W  R  F  R  W  C  F  T  S  F  *  W  Q  E  E  M  T  I  Y  I  Y  S  L  K  I  Q  *  K  T  K  Y  R  Q  N  V  *  Y  Y  F  M  R  S  Q  S  W  P  I  Q  Q  G  N  T  F  S  F  F  F  F  N  Y  S  S  N  *  Y  R  S  *  R  N  C  S  P  F  T  F  V  *  N  R  *  I  E  D  M  I  R  *  K  N  I  *  R  N  L  N  C  K  C  Y  I  V  </second_frame>
            <third_frame>   C  T  P  A  K  L  G  S  I  K  W  K  P  G  L  G  S  R  V  L  G  S  G  D  Y  D  G  V  V  M  E  Y  D  L  E  K  K  M  P  V  F  E  R  D  E  H  G  G  R  R  V  W  S  I  D  Y  C  Q  S  D  P  V  L  G  A  S  G  S  D  D  G  T  M  Q  M  W  D  P  R  C  G  D  S  G  K  C  L  A  M  V  Q  P  T  K  G  Y  S  T  P  V  C  C  V  E  F  N  P  F  K  G  P  I  V  A  V  G  C  A  D  R  R  V  Y  A  Y  D  M  R  K  M  L  D  P  L  F  V  L  D  G  H  E  K  A  V  T  Y  I  R  F  V  D  E  R  T  I  I  S  S  S  I  D  G  C  L  K  M  W  N  A  E  D  Q  K  V  L  R  T  Y  K  G  H  S  N  S  R  R  F  V  G  L  S  V  W  K  P  G  G  L  I  C  C  G  S  E  N  N  Q  V  F  V  Y  D  K  R  W  G  E  P  I  W  M  Y  G  R  E  P  R  H  E  H  G  F  V  S  S  V  C  W  Q  Q  K  D  E  N  Q  C  T  L  V  A  G  D  S  D  G  V  L  R  V  F  N  G  K  R  K  *  L  Y  I  Y  I  H  S  K  S  S  K  R  R  S  I  G  K  M  C  N  I  I  S  *  E  V  N  R  G  Q  Y  N  K  V  T  H  F  L  F  S  F  S  I  I  L  L  I  N  T  G  V  R  G  I  V  H  H  L  H  L  S  E  I  D  R  *  R  I  *  F  D  R  K  I  S  E  E  I  *  I  A  N  A  I  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90752" stop="91549"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTPAKLGSIKWKPGLGSRVLGSGDYDGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCQSDPVLGASGSDDGTMQMWDPRCGDSGKCLAMVQPTKGYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMLDPLFVLDGHEKAVTYIRFVDERTIISSSIDGCLKMWNAEDQKVLRTYKGHSNSRRFVGLSVWKPGGLICCGSENNQVFVYDKRWGEPIWMYGREPRHEHGFVSSVCWQQKDENQCTLVAGDSDGVLRVFNGKRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="106227" PGL_stop="95013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106227" e_stop="105926"/>
            <exon e_start="104277" e_stop="104230"/>
            <exon e_start="102643" e_stop="102578"/>
            <exon e_start="102145" e_stop="102093"/>
            <exon e_start="101201" e_stop="101136"/>
            <exon e_start="100129" e_stop="100055"/>
            <exon e_start="98419" e_stop="98345"/>
            <exon e_start="98073" e_stop="98003"/>
            <exon e_start="97909" e_stop="97858"/>
            <exon e_start="97756" e_stop="97667"/>
            <exon e_start="96182" e_stop="96090"/>
            <exon e_start="95194" e_stop="95013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.491" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106227" e_stop="105926" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104277" e_stop="104230" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102643" e_stop="102578" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102145" e_stop="102093" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101201" e_stop="101136" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101135" i_stop="100130" i_length="1006"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100129" e_stop="100055" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="100054" i_stop="98420" i_length="1635"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98419" e_stop="98345" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98073" e_stop="98003" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97909" e_stop="97858" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97756" e_stop="97667" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.971" acc_prob="0.960">
            <gDNA_intron_boundary i_start="97666" i_stop="96183" i_length="1484"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="96182" e_stop="96090" e_length="93"/>
          </exon>
          <intron i_serial="11" don_prob="0.491" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96089" i_stop="95195" i_length="895"/>
          </intron>
          <exon e_serial="12" e_score="0.901">
            <gDNA_exon_boundary e_start="95194" e_stop="95013" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106227" stop="105926"/>
              <exon start="104277" stop="104230"/>
              <exon start="102643" stop="102578"/>
              <exon start="102145" stop="102093"/>
              <exon start="101201" stop="101136"/>
              <exon start="100129" stop="100055"/>
              <exon start="98419" stop="98345"/>
              <exon start="98073" stop="98003"/>
              <exon start="97909" stop="97858"/>
              <exon start="97756" stop="97667"/>
              <exon start="96182" stop="96090"/>
              <exon start="95194" stop="95013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG : GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT : TTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATG : GCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATG : GGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTACTCTCAGGAGAGAAATGGTCAGCTACTAAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACATTTCTTCTTCTTTTTTCTTTTTTTTTTCGTTCTATCTATATTGTATCTTGATAGGAAAAAAA</gDNA_template>
            <first_frame> R  A  K  S  M  D  Y  K  S  *  R  T  N  I  N  A  Q  C  T  I  Y  L  Y  *  K  I  A  K  R  L  S  W  F  Y  H  F  F  T  L  Q  I  L  P  K  Q  S  N  R  Q  F  S  K  I  K  I  E  N  Q  N  N  *  F  L  Y  F  S  V  Q  I  S  T  E  V  E  I  F  A  L  K  D  G  D  N  D  E  N  C  F  R  A  A  Y  T  C  H  L  W  N  D  S  R :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  M  *  L  S  *  I  D  C  H  S  S  P  S  C  F  H  C  C  R  C  K  N  W  E   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  :  V  *  K  E  S  V  L  *  S  P  S  *  L  F  L  *  *   : F  *  C  E  A  W  R  S  K  N  S  Y  N  A  H  V  F  E  R  Q  C  G  G  G  R  N  I  L  S  Y   : G  W  H  W  *  M  *  L  W  R  Q  N  D  P  R  V  M  C  K  T  Y  E  R  R  C  C  S  F  L  E  Y   : G  A  *  W  T  I  *  P  *  *  S  T  W  R  M  *  S  T  L  R  R  E  M  V  S  Y  *  M  D  E  A  K  N  C  I  L  N  S  S  Y  I  S  S  S  F  F  F  F  F  S  F  Y  L  Y  C  I  L  I  G  K  K </first_frame>
            <second_frame>  E  P  N  L  W  T  T  K  V  D  V  Q  T  S  M  H  N  V  Q  Y  I  C  I  E  K  L  Q  N  V  S  L  G  S  T  I  S  S  L  Y  K  Y  S  Q  N  S  P  I  D  N  F  L  K  S  K  L  K  T  K  T  T  N  F  S  I  F  Q  F  R  F  L  R  K  W  K  F  L  H  *  K  M  G  T  T  M  R  I  V  F  G  L  L  T  L  V  T  C  G  M  I  L   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  E  C  D  Y  L  R  S  I  A  I  P  R  L  H  V  S  T  V  V  D  A  K  T  G  K  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R :   Y  E  K  N  Q  F  Y  R  A  H  H  D  Y  F  S  D  S  :  F  N  V  K  R  G  G  Q  R  I  A  T  M  L  M  Y  L  S  D  N  V  E  G  G  E  T  Y  F  P  M  :  A  G  T  G  K  C  S  C  G  G  K  M  I  Q  G  L  C  V  K  P  T  K  G  D  A  V  L  F  W  S  M  :  G  L  D  G  Q  S  D  P  D  S  L  H  G  G  C  E  V  L  S  G  E  K  W  S  A  T  K  W  M  R  Q  R  T  V  S  *  I  P  H  T  F  L  L  L  F  S  F  F  F  R  S  I  Y  I  V  S  *  *  E  K   </second_frame>
            <third_frame>   S  Q  I  Y  G  L  Q  K  L  T  Y  K  H  Q  C  T  M  Y  N  I  S  V  L  K  N  C  K  T  S  L  L  V  L  P  F  L  H  F  T  N  T  P  K  T  V  Q  S  T  I  F  *  N  Q  N  *  K  P  K  Q  L  I  S  L  F  F  S  S  D  F  Y  G  S  G  N  F  C  I  K  R  W  G  Q  R  *  E  L  F  S  G  C  L  H  L  S  P  V  E  *  F  S  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   N  V  I  I  L  D  R  L  P  F  L  A  F  M  F  P  L  L  *  M  Q  K  L  G  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *   : G  M  K  R  I  S  S  I  E  P  I  M  T  I  S  L  I  V :   L  M  *  S  V  E  V  K  E  *  L  Q  C  S  C  I  *  A  T  M  W  R  G  E  K  H  T  F  L  W :   L  A  L  V  N  V  A  V  A  A  K  *  S  K  G  Y  V  *  N  L  R  K  E  M  L  F  F  F  G  V  W :   G  L  M  D  N  L  T  L  I  V  Y  M  E  D  V  K  Y  S  Q  E  R  N  G  Q  L  L  N  G  *  G  K  E  L  Y  P  K  F  L  I  H  F  F  F  F  F  L  F  F  F  V  L  S  I  L  Y  L  D  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105992" stop="105926"/>
                    <exon start="104277" stop="104230"/>
                    <exon start="102643" stop="102578"/>
                    <exon start="102145" stop="102093"/>
                    <exon start="101201" stop="101136"/>
                    <exon start="100129" stop="100055"/>
                    <exon start="98419" stop="98345"/>
                    <exon start="98073" stop="98003"/>
                    <exon start="97909" stop="97858"/>
                    <exon start="97756" stop="97667"/>
                    <exon start="96182" stop="96090"/>
                    <exon start="95194" stop="95087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGTTMRIVFGLLTLVTCGMILGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEECDYLRSIAIPRLHVSTVVDAKTGKGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYEKNQFYRAHHDYFSDSFNVKRGGQRIATMLMYLSDNVEGGETYFPMAGTGKCSCGGKMIQGLCVKPTKGDAVLFWSMGLDGQSDPDSLHGGCEVLSGEKWSATKWMRQRTVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106226" stop="105993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPNLWTTKVDVQTSMHNVQYICIEKLQNVSLGSTISSLYKYSQNSPIDNFLKSKLKTKTTNFSIFQFRFLRKWKFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105938" e_stop="105926"/>
            <exon e_start="105869" e_stop="105594"/>
            <exon e_start="104277" e_stop="104230"/>
            <exon e_start="102643" e_stop="102578"/>
            <exon e_start="102145" e_stop="102093"/>
            <exon e_start="101201" e_stop="101136"/>
            <exon e_start="98419" e_stop="98345"/>
            <exon e_start="98073" e_stop="98003"/>
            <exon e_start="97909" e_stop="97858"/>
            <exon e_start="97756" e_stop="97751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="0.692"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.692">
            <gDNA_exon_boundary e_start="105938" e_stop="105926" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105925" i_stop="105870" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="105869" e_stop="105594" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105593" i_stop="104278" i_length="1316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104277" e_stop="104230" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102643" e_stop="102578" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102145" e_stop="102093" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101201" e_stop="101136" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.985">
            <gDNA_intron_boundary i_start="101135" i_stop="98420" i_length="2716"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98419" e_stop="98345" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98073" e_stop="98003" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97909" e_stop="97858" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97756" e_stop="97751" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105938" stop="105926"/>
              <exon start="105869" stop="105594"/>
              <exon start="104277" stop="104230"/>
              <exon start="102643" stop="102578"/>
              <exon start="102145" stop="102093"/>
              <exon start="101201" stop="101136"/>
              <exon start="98419" stop="98345"/>
              <exon start="98073" stop="98003"/>
              <exon start="97909" stop="97858"/>
              <exon start="97756" stop="97751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGATTCTCG : CGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG : GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT : TTTAAT</gDNA_template>
            <first_frame> G  M  I  L   : A  F  F  F  L  I  F  *  F  V  S  S  G  I  C  R  F  D  H  S  N  H  Q  W  C  *  L  L  D  W  I  G  V  N  L  D  *  L  K  T  P  C  G  K  K  G  K  K  F  K  W  *  Y  I  C  V  F  V  L  E  M  E  V  *  T  L  K  I  E  S  L  R  V  G  W  W  R  G  Y  M  G  F  D  L  V  M  I  I  L  D  *  D   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R :   Y  E  K  N  Q  F  Y  R  A  H  H  D  Y  F  S  D  S  :  F  N </first_frame>
            <second_frame>  E  *  F  S  :  R  F  F  F  *  F  F  D  L  S  P  P  A  F  A  V  S  I  I  V  I  I  S  G  V  D  Y  L  I  G  L  E  L  I  W  T  N  *  K  P  H  V  E  K  K  G  K  N  L  N  G  D  T  Y  V  C  L  F  W  K  W  R  F  K  L  *  R  L  N  L  Y  G  W  G  G  G  G  G  T  W  G  L  I  S  *  *  S  F  L  I  R  M  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *   : G  M  K  R  I  S  S  I  E  P  I  M  T  I  S  L  I  V :   L   </second_frame>
            <third_frame>   N  D  S  R :   V  F  F  F  N  F  L  I  C  L  L  R  H  L  P  F  R  S  *  *  S  S  V  V  L  I  T  *  L  D  W  S  *  S  G  L  I  K  N  P  M  W  K  K  R  E  K  I  *  M  V  I  H  M  C  V  C  F  G  N  G  G  L  N  F  K  D  *  I  F  T  G  G  V  V  E  G  V  H  G  V  *  S  R  D  D  H  S  *  L  G  W :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  :  V  *  K  E  S  V  L  *  S  P  S  *  L  F  L  *  *   : F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105597" stop="105594"/>
                    <exon start="104277" stop="104230"/>
                    <exon start="102643" stop="102578"/>
                    <exon start="102145" stop="102093"/>
                    <exon start="101201" stop="101136"/>
                    <exon start="98419" stop="98345"/>
                    <exon start="98073" stop="98003"/>
                    <exon start="97909" stop="97858"/>
                    <exon start="97756" stop="97751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYEKNQFYRAHHDYFSDSFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="115405" PGL_stop="120239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115405" e_stop="115560"/>
            <exon e_start="117056" e_stop="117142"/>
            <exon e_start="118482" e_stop="118573"/>
            <exon e_start="118733" e_stop="118841"/>
            <exon e_start="118924" e_stop="118959"/>
            <exon e_start="119769" e_stop="119855"/>
            <exon e_start="119936" e_stop="120239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.934" e_score="0.942"/>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="115405" e_stop="115560" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.934">
            <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117056" e_stop="117142" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118482" e_stop="118573" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118841" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.945">
            <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118924" e_stop="118959" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119769" e_stop="119855" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="119936" e_stop="120239" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115405" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCAAATCTTAGAAAACACAAACTAGTAAAGAAAAAAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG : ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAC</gDNA_template>
            <first_frame> K  S  K  S  *  K  T  Q  T  S  K  E  K  N  T  R  L  Y  R  K  *  S  I  *  K  *  *  E  *  E  Q  K  I  P  Q  L  Q  R  R  R  R  R  S  C  L  Y  L  G  S  P  A  M  :  I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  V  C  E  L  D  L  I  F  N  F  H  K  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  E  A  A  K  E  E  A  S  S  L  S  N  I  I  A  Q  A  T  K  *  E  Y  A  G  S  V  Q  V  F  *  V  H  L  C  F  S  A  V  I  Q  T  L  F  L  L  S  M  F  S  F  N  F  V  V  I  N  R  N  F  F  V  V  M  S  F  L  L  N  L  S  V  V  F  T  S  L  C  C  L  K  T  A  G  H  I  Y  S  T  C  S  S  G  G  A  S  L  *  </first_frame>
            <second_frame>  N  P  N  L  R  K  H  K  L  V  K  K  K  I  Q  D  C  T  E  N  R  V  Y  R  N  N  R  N  R  N  K  K  S  P  N  S  K  E  E  E  G  G  V  V  C  T  L  D  L  Q  P  * :   F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   Y  V  S  *  T  *  F  S  I  F  T  R :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L  R  L  P  K  K  R  Q  V  L  L  V  T  S  L  H  R  L  L  N  E  S  M  Q  A  A  F  K  C  F  E  C  I  Y  V  F  Q  L  *  S  K  H  Y  F  F  F  Q  C  F  R  L  T  L  *  L  *  I  G  I  S  L  *  *  *  V  F  F  S  T  *  A  W  C  L  L  H  S  V  A  *  K  L  L  V  I  Y  I  V  L  V  P  L  V  E  L  A  Y  N </second_frame>
            <third_frame>   I  Q  I  L  E  N  T  N  *  *  R  K  K  Y  K  T  V  Q  K  I  E  Y  I  E  I  I  G  I  G  T  K  N  P  P  T  P  K  K  K  K  E  E  L  F  V  P  W  I  S  S  H   : D  S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  M  *  A  R  L  N  F  Q  F  S  Q   : G  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G  *  G  C  Q  R  R  G  K  F  S  *  *  H  H  C  T  G  Y  *  M  R  V  C  R  Q  R  S  S  V  L  S  A  F  M  F  F  S  C  N  P  N  I  I  S  S  F  N  V  F  V  *  L  C  S  Y  K  *  E  F  L  C  S  N  E  F  S  S  Q  P  K  R  G  V  Y  F  T  L  L  P  K  N  C  W  S  Y  I  *  Y  L  F  L  W  W  S  *  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115492" stop="115560"/>
                    <exon start="117056" stop="117142"/>
                    <exon start="118482" stop="118573"/>
                    <exon start="118733" stop="118841"/>
                    <exon start="118924" stop="118959"/>
                    <exon start="119769" stop="119855"/>
                    <exon start="119936" stop="120007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKIPQLQRRRRRSCLYLGSPAMIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELVIAGELQESSKKTVARLIAAQDSLVEAAKEEASSLSNIIAQATK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120038" stop="120238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHLCFSAVIQTLFLLSMFSFNFVVINRNFFVVMSFLLNLSVVFTSLCCLKTAGHIYSTCSSGGASL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117056" e_stop="117142"/>
            <exon e_start="118482" e_stop="118573"/>
            <exon e_start="118733" e_stop="118841"/>
            <exon e_start="119769" e_stop="119855"/>
            <exon e_start="119936" e_stop="119948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="0.989"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117056" e_stop="117142" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="118482" e_stop="118573" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118841" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118842" i_stop="119768" i_length="927"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119769" e_stop="119855" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119936" e_stop="119948" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTG</gDNA_template>
            <first_frame> I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  </first_frame>
            <second_frame>  F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L </second_frame>
            <third_frame>   S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117056" stop="117142"/>
                    <exon start="118482" stop="118573"/>
                    <exon start="118733" stop="118841"/>
                    <exon start="119769" stop="119855"/>
                    <exon start="119936" stop="119947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSAYYILDELVIAGELQESSKKTVARLIAAQDSLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 57872 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2630 bytes was the average size of a spliced alignment
$ 24992 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1562 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-07 22:26:45
-->
