<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:48:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E395121" ref_strand="-" ref_description="SGN-E395121 	[TUS-37-K23]">
      <seq>tgcaacagcagatggaaaacctgaggagaacagagaaaatgttggagaaagaaaatcatgatatgtgtcagtggttgatgaagtatgaaatgtacaagcaacagccagtagcaatgatggagcaacaagaagaagcagcaattactgaactgaatttacttggagaacaaccattgttgtctcaattttcattctttggagatcaacaccaacttggtactacaagtaattcttcagcatatcaccttcaaacttctcacccttttactccctctacctacgattgatgaggaggagctgcaattgctggggataattaattctacatttcctttggcatatttagaagctatatatagaaagcatgtaaactttaattatatgcatcttaaggatctattgattgtaactaattaaggatgtctagtattggtacaatgaagttttactataattcatatgtgatgtataagaaatttgtttgggtcattttaatttgatggatttataattataaaattttagacttgattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="13241" stop="11458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12941" g_stop="12910" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12909" i_stop="12830" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12829" g_stop="12788" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="74" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12787" i_stop="12507" i_length="281">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12506" g_stop="12299" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="282" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12298" i_stop="12013" i_length="286">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12012" g_stop="11756" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="539" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E395121" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12941" e_stop="12910"/>
          <exon e_start="12829" e_stop="12788"/>
          <exon e_start="12506" e_stop="12299"/>
          <exon e_start="12012" e_stop="11756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAGCAGATGGAAAACCTGAAGAGAACAGTAATATTTTATTTATTTATTTTTCTTAATAAATAAAAATATATATGATTTATTCAATTTTTTTTAAAAAAATGTGGCAGGAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGGGTAAGTCTTTAATTTATCGCACGTTAATTATTTGACTTAATTAATTACTCTTTTTTATATGGTAAAAGTTTGGTCAAACATGTATTCTGAAACATATATGAATGAATCAATTAATTAAACGTATAAAAAGTAGAATTTTATTGAATGTACCAATAAGCTAGACTGTTATTTCATTTCATATATAAATATCTATTGGAATGATCGATTATATTTACATGCATTTTTAAATATAATAAGTAAGTATTTATAAATATTGGATTTGCTATTGCATGTGAAATTAGTTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACGGTAAGAATACACGAGATATCTCAATCTTATTTCATTCAACTTGAAGTATTTTAGCATATGTGAAATAAATTAGTCAGCGAATTAAACGGTACTATAAAAATTCTTTCCATGATTTGCAGTTTTTTTTTCTTGAGCTTAATTATTTGTGGGACTTACTATATATATAGCACATAAAATTTTGATTAGAAAAGCCTTGTTTCAATCATATAGGGACTGTTGAAATATATTCACTATAGTTTTATTATTATGTACGTACTAATGTTTTTTTGAAAAACATAATTTGTAGATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAGATG</genome_strand>
        <mrna_strand>TGCAACAGCAGATGGAAAACCTGAGGAGAACA................................................................................GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG.........................................................................................................................................................................................................................................................................................TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACG..............................................................................................................................................................................................................................................................................................ATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E422545" ref_strand="+" ref_description="SGN-E422545 	[STM-40-J7]">
      <seq>ccgggttccccatatcgctcacagtgtaaaaaccctaacttctccatgaatttttagctccgaagcttcaaattaagcaatggaggttgattattcaattccagaccacaagctatgtggtttctttcttacagccgttgaaatttcgtctccgccgcactcctccgagctccatagcaccctccctttaaattcacaatgctacatcgccggagacggttctaatgtccactttgtaacggataacgacgttgaattgtgtcccattggttctcagacggaagaggaccggaatgatgttgttccgatgaagaagcggagcagaattggaatggtgaatggtagtttaagcgtggtgcatcagttacacaaacttgtaatgcaaaaatgcttgaagattgtttctagggttgttgaggttgtggagcgttgcggtgatgacggcgatgaagaagttagggttgttgttcttgtggatgtgtacttgcctatagctttgtggtctggttggcagttccctaagtctggccctgttgctgcagcacttttccggcatgtcagttgtgactgggaagcttggagttctatgcttcagtctgctaaacttggtgttgaaaaggattttagtatttggaatctgtctgactgtcatgttctaggatgcaaactgcactgcagtgcatctgaccctttccagaaaaagctctttgagctccatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="15871" stop="18238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16168" g_stop="16719" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17779" g_stop="17938" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="721" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E422545" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16168" e_stop="16719"/>
          <exon e_start="17779" e_stop="17938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCTCCCCATCTCGCTGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCG-T--GGCCAT------GATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAGGTAGTGATATCAAGTATAAATTGTTAAAAGTTCGAAAATATGAACTGAAAAAAATGAATTTGATTGGGATCTTAGAAAAAGTTAAAATCAATAAGAATGCAGTTAACCCCTGTAATCCATGAAAGTCTGTTAATTACTTTTTATCAATAATTGCTCGAGCATTCTGTGTGCTTACCTGACACTGGGACTGCTCAGCTTAGTAGTCCAGGTGCTGTGCAAGTGTGCAAGCTCTGAAAACACTAAATCCATTTCATATTTGTATATTGAGATTTTATGAATATTACCTACTTAGATTGTGATTATTCTATGTTTTTATCTTAACCAGCATACATTTGTGAAATCAATTAGTACAACCAACCTGTAGTGGTGGCAATGGTGGGAGAAATCAAGTATAGAATGGAAATAGTCGTGGTGCATCAAGTTAGGCAGGACACTAAAGTTATATTCTATGTATGTTTAGTATAGTGGAAGGAACTGTCCAGCTCTCTTGCTAGTCAAGCTACTGATAAGATCATTTTAGTAATTAGTGAACAATGATGGATGATTAATTTAGGGATGCCAATGACTCAATAGGAGCAACATTGTATTAGAATCGGGGTTGTAGATTAATAGTATATTAAGTGCTAAAAGTTTTTCTTCCCCTTTTCTGTTTGGGTGATAATTATTCTGACAAAACAAAGAGACAAAACTTTCCTTTGCATCTCTCCTTTGATTTAGTTGAAGTCATTGTGACATGAATATGCCATAAATTTTTTAGAAAGTGCAATTCCAATGAAGATGGAATCAGATATTCTTCTATGGAGTTTAGGTTGTCGAATTAGCAGTTGAAATAAATATTAATTATCTAATATAATAACACCATCACACCAAGTGACCTGATGAGCAGTTCTTGAATCTATAAAGTATTAACAGTGGTTCGTAGAATTTCTAGTTGAGTTGGAGCTTTAGAAAATTGTGTTGCATTTAATTGTCTATGCAGCTAATGCTGATTTATGTCCTAAATATTTAATGCAGCTGTGCAGCTGATTCTAATGAAATGTCCCTAATTTTTCTTTGCAGTTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAA</genome_strand>
        <mrna_strand>CCGGGTTCCCCATATCGCTCACAGTGTAAAAACCCTAACTTCTCCATGAATTTTTAGCTCCGAAGCTTCAAATTAAGCAATGGAGGTTGATTATTCAATTCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAATGCTACATCGCCGGAGACGGTTCTAATGTCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCAGACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTTTAAGCGTGGTGCATCAGTTACACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTTCTAGGGTTGTTGAGGTTGTGGAGCGTTGCGGTGATGACGGCGATGAAGAAGTTAGGGTTGTTGTTCTTGTGGATGTGTACTTGCCTATAGCTTTGTGGTCTGGTTGGCAGTTCCCTAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGACTGGGAAGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCTGACTGTCATGTTCTAGGATGCAAACTGCACTGCAGTGCATCTGACCCTTTCCAGAAAAAGCTCTTTGAGCTCCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E448548" ref_strand="+" ref_description="SGN-E448548 	[cSTS-3-D17]">
      <seq>ccgggttccccatatcgctcacagtgtaaaaaccctaacttctccatgaatttttagctccgaagcttcaaattaagcaatggaggttgattattcaattccagaccacaagctatgtggtttctttcttacagccgttgaaatttcgtctccgccgcactcctccgagctccatagcaccctccctttaaattcacaatgctacatcgccggagacggttctaatgtccactttgtaacggataacgacgttgaattgtgtcccattggttctcagacggaagaggaccggaatgatgttgttccgatgaagaagcggagcagaattggaatggtgaatggtagtttaagcgtggtgcatcagttacacaaacttgtaatgcaaaaatgcttgaagattgtttctagggttgttgaggttgtggagcgttgcggtgatgacggcgatgaagaagttagggttgttgttcttgtggatgtgtacttgcctatagctttgtggtctggttggcagttccctaagtctggccctgttgctgcagcacttttccggcatgtcagttgtgactgggaagcttggagttctatgcttcagtctgctaaacttggtgttgaaaaggattttagtatttggaatctgtctgactgtcatgttctaggatgcaaactgcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="15871" stop="18193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16168" g_stop="16719" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17779" g_stop="17893" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="676" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E448548" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16168" e_stop="16719"/>
          <exon e_start="17779" e_stop="17893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCTCCCCATCTCGCTGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCG-T--GGCCAT------GATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAGGTAGTGATATCAAGTATAAATTGTTAAAAGTTCGAAAATATGAACTGAAAAAAATGAATTTGATTGGGATCTTAGAAAAAGTTAAAATCAATAAGAATGCAGTTAACCCCTGTAATCCATGAAAGTCTGTTAATTACTTTTTATCAATAATTGCTCGAGCATTCTGTGTGCTTACCTGACACTGGGACTGCTCAGCTTAGTAGTCCAGGTGCTGTGCAAGTGTGCAAGCTCTGAAAACACTAAATCCATTTCATATTTGTATATTGAGATTTTATGAATATTACCTACTTAGATTGTGATTATTCTATGTTTTTATCTTAACCAGCATACATTTGTGAAATCAATTAGTACAACCAACCTGTAGTGGTGGCAATGGTGGGAGAAATCAAGTATAGAATGGAAATAGTCGTGGTGCATCAAGTTAGGCAGGACACTAAAGTTATATTCTATGTATGTTTAGTATAGTGGAAGGAACTGTCCAGCTCTCTTGCTAGTCAAGCTACTGATAAGATCATTTTAGTAATTAGTGAACAATGATGGATGATTAATTTAGGGATGCCAATGACTCAATAGGAGCAACATTGTATTAGAATCGGGGTTGTAGATTAATAGTATATTAAGTGCTAAAAGTTTTTCTTCCCCTTTTCTGTTTGGGTGATAATTATTCTGACAAAACAAAGAGACAAAACTTTCCTTTGCATCTCTCCTTTGATTTAGTTGAAGTCATTGTGACATGAATATGCCATAAATTTTTTAGAAAGTGCAATTCCAATGAAGATGGAATCAGATATTCTTCTATGGAGTTTAGGTTGTCGAATTAGCAGTTGAAATAAATATTAATTATCTAATATAATAACACCATCACACCAAGTGACCTGATGAGCAGTTCTTGAATCTATAAAGTATTAACAGTGGTTCGTAGAATTTCTAGTTGAGTTGGAGCTTTAGAAAATTGTGTTGCATTTAATTGTCTATGCAGCTAATGCTGATTTATGTCCTAAATATTTAATGCAGCTGTGCAGCTGATTCTAATGAAATGTCCCTAATTTTTCTTTGCAGTTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGC</genome_strand>
        <mrna_strand>CCGGGTTCCCCATATCGCTCACAGTGTAAAAACCCTAACTTCTCCATGAATTTTTAGCTCCGAAGCTTCAAATTAAGCAATGGAGGTTGATTATTCAATTCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAATGCTACATCGCCGGAGACGGTTCTAATGTCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCAGACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTTTAAGCGTGGTGCATCAGTTACACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTTCTAGGGTTGTTGAGGTTGTGGAGCGTTGCGGTGATGACGGCGATGAAGAAGTTAGGGTTGTTGTTCTTGTGGATGTGTACTTGCCTATAGCTTTGTGGTCTGGTTGGCAGTTCCCTAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGACTGGGAAGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCTGACTGTCATGTTCTAGGATGCAAACTGCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E344324" ref_strand="+" ref_description="SGN-E344324 	[cTOF-16-F17]">
      <seq>tgacagtttcgaaaccctaacttctccatgaattcttagctccgaagcttcaaattcagcgatggagggtgattattcaatcccagaccacaagctatgtggtttctttcttacagccgttgaaatttcgtctccgccgcactcctccgagctccatagcaccctccctttaaattcacagtgctacatcgccggagacggttctaatatccactttgtaacggataacgacgttgaattgtgtcccattggttctcatacggaagaggaccggaatgatgttgttccgatgaagaagcggagcagaattggaatggtgaatggtagtataagcgtggtgcatcagttgcacaaacttgtaatgcaaaaatgcttgaagattgttgctagggttcttgaggttgtggagcgtggccatgatgaagaagttagggctgttgttcttgtggatgtgtacttgcctttagctttgtggtccggttggcagttccccaagtctggccctgttgctgcagcacttttccggcatatcagttgtgactgggatgcttggagttctatgcttcagtctgctaaacttggtgttgaaaaggattttagtatttggaatctgtccgactgtcatgttctaggatgcaaactgcattgcagtgcatctgacccttnncaagaaaagctctttgagctccatgaaattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="15886" stop="18245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16186" g_stop="16719" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17779" g_stop="17945" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="701" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E344324" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16186" e_stop="16719"/>
          <exon e_start="17779" e_stop="17945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAGGTAGTGATATCAAGTATAAATTGTTAAAAGTTCGAAAATATGAACTGAAAAAAATGAATTTGATTGGGATCTTAGAAAAAGTTAAAATCAATAAGAATGCAGTTAACCCCTGTAATCCATGAAAGTCTGTTAATTACTTTTTATCAATAATTGCTCGAGCATTCTGTGTGCTTACCTGACACTGGGACTGCTCAGCTTAGTAGTCCAGGTGCTGTGCAAGTGTGCAAGCTCTGAAAACACTAAATCCATTTCATATTTGTATATTGAGATTTTATGAATATTACCTACTTAGATTGTGATTATTCTATGTTTTTATCTTAACCAGCATACATTTGTGAAATCAATTAGTACAACCAACCTGTAGTGGTGGCAATGGTGGGAGAAATCAAGTATAGAATGGAAATAGTCGTGGTGCATCAAGTTAGGCAGGACACTAAAGTTATATTCTATGTATGTTTAGTATAGTGGAAGGAACTGTCCAGCTCTCTTGCTAGTCAAGCTACTGATAAGATCATTTTAGTAATTAGTGAACAATGATGGATGATTAATTTAGGGATGCCAATGACTCAATAGGAGCAACATTGTATTAGAATCGGGGTTGTAGATTAATAGTATATTAAGTGCTAAAAGTTTTTCTTCCCCTTTTCTGTTTGGGTGATAATTATTCTGACAAAACAAAGAGACAAAACTTTCCTTTGCATCTCTCCTTTGATTTAGTTGAAGTCATTGTGACATGAATATGCCATAAATTTTTTAGAAAGTGCAATTCCAATGAAGATGGAATCAGATATTCTTCTATGGAGTTTAGGTTGTCGAATTAGCAGTTGAAATAAATATTAATTATCTAATATAATAACACCATCACACCAAGTGACCTGATGAGCAGTTCTTGAATCTATAAAGTATTAACAGTGGTTCGTAGAATTTCTAGTTGAGTTGGAGCTTTAGAAAATTGTGTTGCATTTAATTGTCTATGCAGCTAATGCTGATTTATGTCCTAAATATTTAATGCAGCTGTGCAGCTGATTCTAATGAAATGTCCCTAATTTTTCTTTGCAGTTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</genome_strand>
        <mrna_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTNNCAAGAAAAGCTCTTTGAGCTCCATGAAATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E422546" ref_strand="+" ref_description="SGN-E422546 	[STM-40-J7]">
      <seq>ttttttttttgagtttttcctagcatttctctcttcaggaaaaggggacgttccttcatatgcatacataagatctctttttatctggctatagctactggtacacctcgcagtagaccttcttggagtggaatgtgtgactgtatgtgaactgatttctgaaattgctatatgatcagctgaactaacaaccatggatccaagtgatgtggagaagctgttcaagcttttctctggggttactttctctaaagataattgtcctcttcggccattgtgtccagtagctctactagataataaaacaccagaactgactgtatcttcactactaagctcataataaccacacctctgatcagcattatgcatacaccagatgacttgtgcaccatctggtggctctgccagtgttccctgagtcttcaaaatgagagaaagagcagtaatagttttacctaagccaggctcatcacagaacattcccccatggaaatccttgattgtaggagcatgccctgtggctatttgaccagaaacagcatttatataaaaagcaaatccatcttcagtgacaaaatccatgtacagtggggtgctgaagtaactcaacattacgctcacgctgtaacatccagtcaactgcagcctgctgatgagcaaacaatttcagcttcatacatggcatgattgatgcagccagaaattttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19124" stop="17811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18823" g_stop="18111" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E422546" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18823" e_stop="18111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTTTGAGTTTTTCCTAGAATTTCTCTCTTCAGGAAAAGAAGATGTTCCTTCATATTCATACATAAGATCTCTTTTTATCTGGCTATAGCTACTAGTACACCTCGCAGTAGACCTTCTTGGAGTAGACTGTGTGACTGTAGATGAACTGATTTCTGAAATTGCTACATGATCAGCTGAATTAACAACCATGGATCCAAGTGATGTGGAGAAGCTGTTCAAGCTTTTCTCTGGGGTTAATTTCTCTAAAGATAATTGTCCTCTTCGGCCATTGTGTCCAGTAGCTCTATTAGATGATAAAACACCAGAATTGATTGTATCTTCACTACTAAGCTCATAATAACCACACCTCCGATGAGCATTATGCATACACCAGATGACTAGTGCACCATCTGGTGGCTCTGCCAGTGTTCCCTGAGTCTTCAAAATGAGAGAAAGAGCAGTAATAGTTTTACCTAAGCCAGGCTCATCACAGAACATTCCCCCATGGAAATCCTTGATAGTAGGAGCATGCCCTGTGGTTATTTGACCAGAAACAGCATTTATATAAAAAGCAAATCCATCTTCAGTGACAAAATCCATGTACAGT-GGGTGCTTAAGTAATTCAACACTACGCTCACGCTGTAACATCCAGTCAACTGCAGCCTGCTGATGAGCAAACAATTTCAGCTTCAAACATGGCATGATTGATGCAGCAAGAAATTTTAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTGAGTTTTTCCTAGCATTTCTCTCTTCAGGAAAAGGGGACGTTCCTTCATATGCATACATAAGATCTCTTTTTATCTGGCTATAGCTACTGGTACACCTCGCAGTAGACCTTCTTGGAGTGGAATGTGTGACTGTATGTGAACTGATTTCTGAAATTGCTATATGATCAGCTGAACTAACAACCATGGATCCAAGTGATGTGGAGAAGCTGTTCAAGCTTTTCTCTGGGGTTACTTTCTCTAAAGATAATTGTCCTCTTCGGCCATTGTGTCCAGTAGCTCTACTAGATAATAAAACACCAGAACTGACTGTATCTTCACTACTAAGCTCATAATAACCACACCTCTGATCAGCATTATGCATACACCAGATGACTTGTGCACCATCTGGTGGCTCTGCCAGTGTTCCCTGAGTCTTCAAAATGAGAGAAAGAGCAGTAATAGTTTTACCTAAGCCAGGCTCATCACAGAACATTCCCCCATGGAAATCCTTGATTGTAGGAGCATGCCCTGTGGCTATTTGACCAGAAACAGCATTTATATAAAAAGCAAATCCATCTTCAGTGACAAAATCCATGTACAGTGGGGTGCTGAAGTAACTCAACATTACGCTCACGCTGTAACATCCAGTCAACTGCAGCCTGCTGATGAGCAAACAATTTCAGCTTCATACATGGCATGATTGATGCAGCCAGAAATTTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E374909" ref_strand="+" ref_description="SGN-E374909 	[TUS-15-A23]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaggcaggtgatgatattcaagaaactatggatatcttagttgaggatggtctggatcccacttcagaggagtatggtctgataaaatatcacattttatttggtggaaactgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19376" stop="20673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19676" g_stop="20373" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E374909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19676" e_stop="20373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E201574" ref_strand="+" ref_description="SGN-E201574 	[cLEC-11-E5]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaagcaggtgatgatattcaagaaactatggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19376" stop="20590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19676" g_stop="20290" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E201574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19676" e_stop="20290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATC</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAAGCAGGTGATGATATTCAAGAAACTATGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E379472" ref_strand="+" ref_description="SGN-E379472 	[TUS-1-L3]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaggcaggtgatgatattcnagaaactatggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19376" stop="20589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19676" g_stop="20289" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E379472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19676" e_stop="20289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATAT</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCNAGAAACTATGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E432363" ref_strand="+" ref_description="SGN-E432363 	[STM-56-N20]">
      <seq>ctccaaacacccccagtagccagctttctcatctgcaacccttacttaagtacctccatgatgaagcttatggacagaatcagaaagcctgggaagctggtattctcaggccatttgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcccccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtactaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtgacagaggcaggtgatgatattcaagaaactatggatatcttagttgaggatggtctggatcccacttcagaagagtatggtctgataaaatatcacattttatttggtggaaactgcatgaggtgtaaagtatggtgccgtctaccagtgattacaccttgtaaacatctattatgccttgactgtgtttctttagatagcgagaagtgtacaattcctggctgtggtaacttgtatgagatgcaaagtcctgaaacactggcccgtcctgaaaatcctaatccaaagtggccccgttcaaaggatctgattgagttgcaaccatcttataaacaggatgactgggatcccgattggcatcaacatctagcagtaagttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19527" stop="21141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19827" g_stop="20373" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20374" i_stop="20470" i_length="97">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20471" g_stop="20684" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="761" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20685" i_stop="20792" i_length="108">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20793" g_stop="20841" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="808" r_length="47" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E432363" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19827" e_stop="20373"/>
          <exon e_start="20471" e_stop="20684"/>
          <exon e_start="20793" e_stop="20841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAGGTTAGTCATAGCCTCTGAGATCATATGTGGGCAATGTTTTCGTTTAGACCAAATGCATCATGATTTTGATTTTGTTTTCTAAAAATAATTTATGTAGGTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAGGTAGGTCTAATCCTCAAGGACATACATATTGGGCAAGACCTAGTTTATAGTTCATTTTTTTTTATCCCGTAACAAACTACTTACTAATATTTGATTATTCTTCTGAAGGATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTT</genome_strand>
        <mrna_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTACTTAAGTACCTCCATGATGAAGCTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAGGCCATTTGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCCCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACTACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTGACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAAGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG.................................................................................................GTGTAAAGTATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTCCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCTAATCCAAAGTGGCCCCGTTCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG............................................................................................................GATGACTGGGATCCCGATTGGC-ATCAACATCTAGCAGT-AAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E401492" ref_strand="+" ref_description="SGN-E401492 	[PPC-4-I10]">
      <seq>ctccaaacacccccagtagccagctttctcatctgcaacccttacttaagtacctccatgatgaagcttatggacagaatcagaaagcctgggaagctggtattctcaggccatttgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19527" stop="20327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19827" g_stop="20027" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E401492" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19827" e_stop="20027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGA</genome_strand>
        <mrna_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTACTTAAGTACCTCCATGATGAAGCTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAGGCCATTTGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E378016" ref_strand="+" ref_description="SGN-E378016 	[TUS-20-P16]">
      <seq>ttttttttttgcgtttaattaataaattttcaaaatacaaaaaatgtttttaagtacttatatttctttaaaatcctttcggggaaaaggttccttttttatcttttgaaaaacaattcttgttattcataaaaatatacacttttaacctcataaaaaatttaaccatccaaaaataaaatattcaacatctaccattctactttattccttttataaaaataaaataaattgatagcactttattcctaatcatcaacccatcatctacaattattcccatttttttttccaatttcaaagttagattgattagcgggtcccgcttaatttaatttaaaatacaaaatccaatttaccctaagataggaacttataccataactttaaactttagggaaaatatacaccttaacttgtatatacacttgataactcattggaaactacatgctagctctctaagcttctaacctaattgagtatgtgtgatacattcttcttctaggttccttctttcataatcagagctcggaaaaagaagagatttactaaaggaaaatctagctatattactatttttttgtaccaaattttgattgtaaattaattggatatcacaccttcacgttggagaggttcaatccttactataacttgttgtactgctgcctctctaatattattattagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="26544" stop="27833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26838" g_stop="27533" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E378016" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26838" e_stop="27533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATTTTGCGTTTAATTAATAAATTTTCAAAATACAAAAAATGTTTTTAAGTACTTATATTTCTTTAAAATCCTTTCGGGGAAAAGGTTCCTTTTTTATCTTTTGAAAAACAATTCTTGTTATTCATAAAAATATACACTTTTAACCTCATAAAAAATTTAACCATCCAAAAATAAAATATTCAACATCTACCATTCTACTTTATTCCTTTTATAAAAATAAAATAAATTGATAGCACTTTATTCCTAATCATCAACCCATCATCTACAATTATTCCCATTTTTTTTTCCAATTTCAAAGTTAGATTGATTAGCGGGTCCCGCTTAATTTAATTTAAAATACAAAATCCAATTTACCCTAAGATAGGAACTTATACCATAACTTTAAACTTTAGGGAAAATATACACCTTAACTTGTATATACACTTGATAACTCATTGGAAACTACATGCTAGCTCTCTAAGCTTCTAACCTAATTGAGTATGTGTGATACATTCTTCTTCTAGGTTCCTTCTTTCATAATCAGAGCTCGGAAAAAGAAGAGATTTACTAAAGGAAAATCTAGCTATATTACTATTTTTTTGTACCAAATTTTGATTGTAAATTAATTGGATATCACACCTTCACGTTGGAGAGGTTCAATCCTTACTATAACTTGTTGTACTGCTGCCTCTCTAATATTATTATTAGTAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTGCGTTTAATTAATAAATTTTCAAAATACAAAAAATGTTTTTAAGTACTTATATTTCTTTAAAATCCTTTCGGGGAAAAGGTTCCTTTTTTATCTTTTGAAAAACAATTCTTGTTATTCATAAAAATATACACTTTTAACCTCATAAAAAATTTAACCATCCAAAAATAAAATATTCAACATCTACCATTCTACTTTATTCCTTTTATAAAAATAAAATAAATTGATAGCACTTTATTCCTAATCATCAACCCATCATCTACAATTATTCCCATTTTTTTTTCCAATTTCAAAGTTAGATTGATTAGCGGGTCCCGCTTAATTTAATTTAAAATACAAAATCCAATTTACCCTAAGATAGGAACTTATACCATAACTTTAAACTTTAGGGAAAATATACACCTTAACTTGTATATACACTTGATAACTCATTGGAAACTACATGCTAGCTCTCTAAGCTTCTAACCTAATTGAGTATGTGTGATACATTCTTCTTCTAGGTTCCTTCTTTCATAATCAGAGCTCGGAAAAAGAAGAGATTTACTAAAGGAAAATCTAGCTATATTACTATTTTTTTGTACCAAATTTTGATTGTAAATTAATTGGATATCACACCTTCACGTTGGAGAGGTTCAATCCTTACTATAACTTGTTGTACTGCTGCCTCTCTAATATTATTATTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E378017" ref_strand="+" ref_description="SGN-E378017 	[TUS-20-P16]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttatcaagtgtatatacaagttaaggtgtatattttccctaaagtttaaagttatggtataagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="28188" stop="26908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27208" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E378017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E240364" ref_strand="+" ref_description="SGN-E240364 	[cLED-25-K22]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="28188" stop="26969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27269" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E240364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTAT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E231818" ref_strand="+" ref_description="SGN-E231818 	[cLED-7-K21]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="28188" stop="27018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27318" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E231818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTC</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E242401" ref_strand="+" ref_description="SGN-E242401 	[cLED-30-O1]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="28188" stop="27064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27364" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E242401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E240945" ref_strand="+" ref_description="SGN-E240945 	[cLED-24-I18]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="28188" stop="27074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27888" g_stop="27374" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E240945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27888" e_stop="27374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E332480" ref_strand="+" ref_description="SGN-E332480 	[cTOD-17-D22]">
      <seq>atctctcaacaatttctatcatatatcatatttttattttattttcaggattgattgctttctatcgctcaccttcgtatcattctccttaatattatatcttttggttttgtaggccacttacaatctttttttctttttagtttatgttcgttttatgagagattttcatttctacacatacgagatttgaaaagactaggtggtcaaaaaatcttcatatttctacgcatacaaaagatctgaaaagaccatatggtcaaaatatcataatttcaacctatacgagatttgaatataccaagtggtcaagagatgttcatttctacccatacgagatcggcggtcaagatatcttaattccctattggtataatattgttaatagtaaagagagaatttttattttatgatggatcatcacagggacaatgaatttgaatatcaagaaatcgagaaaacaaagacatcatcaaaattcaatagatcaaggactatacacagcccgagaaactcgattgaattccccgaaaagcccttgtatctctacccttctcctcattccatcgaacgtaatggctccattaaaaagcttcattgctcacctttaggatccatggttggaaaagtgaaaaagctgtattcaattttcgattctcgtaaagaaatcctcgatcctcgattccaaaactcaaagcagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="32668" stop="31361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32368" g_stop="31661" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E332480" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32368" e_stop="31661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</genome_strand>
        <mrna_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAG-AAATCCTCGATCCTCGATTCCAAAA-CTCAAAGC-AGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E615664" ref_strand="+" ref_description="SGN-E615664 	[65465]">
      <seq>gttccattgatcctttttcagatgatgtatttcgtgccttccatggttcaagttggcattttttcgacattgatccacattcagatttatgtgatgctaaaccttgaactcttgttttctggattgtactctttattggaactgatatcaaatttttattatgatataggaaaatgttctttctttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="34158" stop="33369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33858" g_stop="33664" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E615664" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33858" e_stop="33664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATTGATCCCTTTTCAGACGATCAATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCTCATTCAGATTTATGTGATGCTAAACCATGAACACTTTTTTTTCTGGATTGTACCTCTTCATTGGAACTGAATATCAAAATTTTATTATGATTTAGGAAAATGTTCTTTCTTTACCTTT</genome_strand>
        <mrna_strand>GTTCCATTGATCCTTTTTCAGATGATGTATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCACATTCAGATTTATGTGATGCTAAACCTTGAACTC-TTGTTTTCTGGATTGTA-CTCTTTATTGGAACTG-ATATCAAATTTTTATTATGATATAGGAAAATGTTCTTTCTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E429510" ref_strand="-" ref_description="SGN-E429510 	[STM-52-O1]">
      <seq>gtagaggtatttgatccagtgatctctctggcagaatctaaggtgctgacagctctcggttgttctgtcctaacagtcaatgaacagggtcgacgtcaagctttaagacctacgatgttcttcatgccacattgtgatgctgaactatatgagaatcttctagaggcaaattggaggcatgatctattgagtaatatgacactgtttggaaacagttttgaggcgtatgagcaacacgtgtcagagtgcaaaatccttagacttgctgattctaggaagcatatcctagcaatcaggcagtttgtaaaagagcttcccattgattctaggaagcaaatcgtagcattgaggcagtttgtaaaagagcgttccattgatcctttttcagatgatgtatttcgtgccttccatggttcaagttggcattttttcgacattgatccacattcagatttatgtgatgctaaaccttgaactcttgttttctggattgtactctttattggaactgaatatcaaatttttattatgatataggaaaatgttctttctttaaaaaaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="34525" stop="33369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34225" g_stop="33669" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="579"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E429510" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429510" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34225" e_stop="33669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGGTATTTGATCCAGTGATCTCTCTGGCAGAATCTAGGGTGCTGACAGCTCTCGGTTGTTCTGTCCTAACAGTCAATGAACAGGGTAGACGGCAAGCTTTAAGACCTACGATGTTCTTCATGCCACATTGTGATGCTGAACTATATGAGAATCTTCTAGAGGCAAATTGGAGGCATGATCTATTGGGTAATATGATACTGTTTGGAAATAGTTTTGAGGCGTATGAGCAACACGTGTCAGAGTGCAAAAACCTTAGACTTGCTGATTCTAGGAAGCATATCATAGCAATCAGGCAGTTTGTAAATGAGCTTCCCATTGATTCTAGGAAGCAGATTGTAGCATTCAGGCAGTTTGTAAAAGAGCGTTCCATTGATCCCTTTTCAGACGATCAATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCTCATTCAGATTTATGTGATGCTAAACCATGAACACTTTTTTTTCTGGATTGTACCTCTTCATTGGAACTGAATATCAAAATTTTATTATGATTTAGGAAAATGTTCTTTCTTTA</genome_strand>
        <mrna_strand>GTAGAGGTATTTGATCCAGTGATCTCTCTGGCAGAATCTAAGGTGCTGACAGCTCTCGGTTGTTCTGTCCTAACAGTCAATGAACAGGGTCGACGTCAAGCTTTAAGACCTACGATGTTCTTCATGCCACATTGTGATGCTGAACTATATGAGAATCTTCTAGAGGCAAATTGGAGGCATGATCTATTGAGTAATATGACACTGTTTGGAAACAGTTTTGAGGCGTATGAGCAACACGTGTCAGAGTGCAAAATCCTTAGACTTGCTGATTCTAGGAAGCATATCCTAGCAATCAGGCAGTTTGTAAAAGAGCTTCCCATTGATTCTAGGAAGCAAATCGTAGCATTGAGGCAGTTTGTAAAAGAGCGTTCCATTGATCCTTTTTCAGATGATGTATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCACATTCAGATTTATGTGATGCTAAACCTTGAACTC-TTGTTTTCTGGATTGTA-CTCTTTATTGGAACTGAATATCAAATTTTTATTATGATATAGGAAAATGTTCTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E457403" ref_strand="-" ref_description="SGN-E457403 	[cPRO-2-J15]">
      <seq>tttgaggcgtatgagcaacacgtgtcagagtgcaaaatccttagacttgctgattctaggaagcatatcctagcaatcaggcagtttgtaaaagagcttcccattgattctaggaagcaaatcgtagcattgaggcagtttgtaaaagagcgttccattgatcctttttcagatgatgtatttcgtgccttccatggttcaagttggcattttttcgacattgatccacattcagatttatgtgatgctaaaccttgaactcttgttttctggattgtactctttattggaactgaatatcaaatttttattatgatataggaaaatgttctttctttaaaaaaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="34309" stop="33369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34009" g_stop="33669" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="363"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E457403" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457403" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34009" e_stop="33669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGCGTATGAGCAACACGTGTCAGAGTGCAAAAACCTTAGACTTGCTGATTCTAGGAAGCATATCATAGCAATCAGGCAGTTTGTAAATGAGCTTCCCATTGATTCTAGGAAGCAGATTGTAGCATTCAGGCAGTTTGTAAAAGAGCGTTCCATTGATCCCTTTTCAGACGATCAATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCTCATTCAGATTTATGTGATGCTAAACCATGAACACTTTTTTTTCTGGATTGTACCTCTTCATTGGAACTGAATATCAAAATTTTATTATGATTTAGGAAAATGTTCTTTCTTTA</genome_strand>
        <mrna_strand>TTTGAGGCGTATGAGCAACACGTGTCAGAGTGCAAAATCCTTAGACTTGCTGATTCTAGGAAGCATATCCTAGCAATCAGGCAGTTTGTAAAAGAGCTTCCCATTGATTCTAGGAAGCAAATCGTAGCATTGAGGCAGTTTGTAAAAGAGCGTTCCATTGATCCTTTTTCAGATGATGTATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCACATTCAGATTTATGTGATGCTAAACCTTGAACTC-TTGTTTTCTGGATTGTA-CTCTTTATTGGAACTGAATATCAAATTTTTATTATGATATAGGAAAATGTTCTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E550631" ref_strand="+" ref_description="SGN-E550631 	[TUS-11-J5]">
      <seq>tggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgaggggtgccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactcggtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="35679" stop="34539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35379" g_stop="34839" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E550631" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35379" e_stop="34839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGAGGGGTGCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCGGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E271608" ref_strand="+" ref_description="SGN-E271608 	[cLEM-23-J16]">
      <seq>ggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgatcatttccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactctgtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="35678" stop="34539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35378" g_stop="34839" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E271608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35378" e_stop="34839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E390955" ref_strand="+" ref_description="SGN-E390955 	[TUS-46-N14]">
      <seq>ttttttttttttatccaacccagaaaaatactaaaaagttcgatgacgaccgaattttagctggtaacagaatgaaccaaggaagagagcaatttccagtccataaataaaactagcatcaaaatgcccaacagcagagaccctagctgccaataagacatcaattttctaatgttttgccttaactaaatgtgcctttcagctgtgacttcaaaaatacgagactcaggtttcttatgggtaacgcgccaagataactatatataattacagaactagaaaacaggggcaatgcaagaggcagaaattgcatcatgtcagctgttcaaagccggaggtcgaaacattatttggttttggagtaggacaaccagtatgcttgttggttttgttcttctcctctgcctgtgtggaagtcaatttctcgctgtgaaacaaactttcacccaattctgactcatgtttcctcttcactttcttttttggcaccgcatctgctcctcgtggatcaacagagctgccagaaactccctttagcttctcctgctttagacgattcacatcagaaccattagctatggaaacatgcactcgtgcagaagcatttacagctgcactactgtatactggcttgtttgttgaagttgaagaatgatcaactacaatcttttcttggatatgcaccgactgggcaataggtccagcatctactctactagtatccccttcctttgtggccaataatttgttcctcctaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="40391" stop="41743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40682" g_stop="41443" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E390955" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40682" e_stop="41443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTGCATTTATCCAACCCAGAAAAATACTAAAAAGTTCGATGACGACCGAATTTTAGCTGGTAACAGAATGAACCAAGGAAGAGAGCAATTTCCAGTCCATAAATAAAACTAGCATCAAAATGCCCAACAGCAGAGACCCTAGCTGCCAATAAGACATCAATTTTCTAATGTTTTGCCTTAACTAAATGTGCCTTTCAGCTGTGACTTCAAAAATACGAGACTCAGGTTTCTTATGGGTAACGCGCCAAGATAACTATATATAATTACAGAACTAGAAAACAGGGGCAATGCAAGAGGCAGAAATTGCATCATGTCAGCTGTTCAAAGCCGGAGGTCGAAACATTATTTGGTTTTGGAGTAGGACAACCAGTATGCTTGTTGGTTTTGTTCTTCTCCTCTGCCTGTGTGGAAGTCAATTTCTCGCTGTGAAACAAACTTTCACCCAATTCTGACTCATGTTTCCTCTTCACTTTCTTTTTTGGCACCGCATCTGCTCCTCGTGGATCAACAGAGCTGCCAGAAACTCCCTTTAGCTTCTCCTGCTTTAGACGATTCACATCAGAACCATTAGCTATGGAAACATGCACTCGTGCAGAAGCATTTACAGCTGCACTACTGTATACTGGCTTGTTTGTTGAAGTTGAAGAATGATCAACTACAATCTTTTCTTGGATATGCACCGACTGGGCAATAGGTCCAGCATCTACTCTACTAGTATCCCCTTCCTTTGTGGCCAATAATTTGTTCCTCCTAATTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTATCCAACCCAGAAAAATACTAAAAAGTTCGATGACGACCGAATTTTAGCTGGTAACAGAATGAACCAAGGAAGAGAGCAATTTCCAGTCCATAAATAAAACTAGCATCAAAATGCCCAACAGCAGAGACCCTAGCTGCCAATAAGACATCAATTTTCTAATGTTTTGCCTTAACTAAATGTGCCTTTCAGCTGTGACTTCAAAAATACGAGACTCAGGTTTCTTATGGGTAACGCGCCAAGATAACTATATATAATTACAGAACTAGAAAACAGGGGCAATGCAAGAGGCAGAAATTGCATCATGTCAGCTGTTCAAAGCCGGAGGTCGAAACATTATTTGGTTTTGGAGTAGGACAACCAGTATGCTTGTTGGTTTTGTTCTTCTCCTCTGCCTGTGTGGAAGTCAATTTCTCGCTGTGAAACAAACTTTCACCCAATTCTGACTCATGTTTCCTCTTCACTTTCTTTTTTGGCACCGCATCTGCTCCTCGTGGATCAACAGAGCTGCCAGAAACTCCCTTTAGCTTCTCCTGCTTTAGACGATTCACATCAGAACCATTAGCTATGGAAACATGCACTCGTGCAGAAGCATTTACAGCTGCACTACTGTATACTGGCTTGTTTGTTGAAGTTGAAGAATGATCAACTACAATCTTTTCTTGGATATGCACCGACTGGGCAATAGGTCCAGCATCTACTCTACTAGTATCCCCTTCCTTTGTGGCCAATAATTTGTTCCTCCTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E390764" ref_strand="+" ref_description="SGN-E390764 	[TUS-47-M13]">
      <seq>ttttttttttttatcctacccataaaaatactaaaaagttcgatgacgaccgaattttacctggtaacaaaatgaaccaaggaagagagcaatttccagtccataaataaaactagcatcaaaatgcccaacagcagagaccctagctgccaataagacatcaattttctaatgttttgccttaactaaatgtgcctttcagctgtgacttcaaaaatacgagactcaggtttcttatgggtaacgcgccaagataactatatataattacagaactagaaaacaggggcaatgcaagaggcagaaattgcatcatgtcagctgttcaaagccggaggtcgaaacattatttggttttggagtaggacaaccagtatgcttgttggttttgttcttctcctctgcctgtgtggaagtcaatttctcgctgtgaaacaaactttcacccaattctgactcatgtttcctcttcactttcttttttggcaccgcatctgctcctcgtggatcaacagagctgccagaaactccctttagcttctcctgctttagacgattcacatcagaaccattagctatggaaacatgcactcgtgcagaagcatttacagctgcactactgtatactggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="40391" stop="41614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40682" g_stop="41314" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E390764" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40682" e_stop="41314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTGCATTTATCCAACCCAGAAAAATACTAAAAAGTTCGATGACGACCGAATTTTAGCTGGTAACAGAATGAACCAAGGAAGAGAGCAATTTCCAGTCCATAAATAAAACTAGCATCAAAATGCCCAACAGCAGAGACCCTAGCTGCCAATAAGACATCAATTTTCTAATGTTTTGCCTTAACTAAATGTGCCTTTCAGCTGTGACTTCAAAAATACGAGACTCAGGTTTCTTATGGGTAACGCGCCAAGATAACTATATATAATTACAGAACTAGAAAACAGGGGCAATGCAAGAGGCAGAAATTGCATCATGTCAGCTGTTCAAAGCCGGAGGTCGAAACATTATTTGGTTTTGGAGTAGGACAACCAGTATGCTTGTTGGTTTTGTTCTTCTCCTCTGCCTGTGTGGAAGTCAATTTCTCGCTGTGAAACAAACTTTCACCCAATTCTGACTCATGTTTCCTCTTCACTTTCTTTTTTGGCACCGCATCTGCTCCTCGTGGATCAACAGAGCTGCCAGAAACTCCCTTTAGCTTCTCCTGCTTTAGACGATTCACATCAGAACCATTAGCTATGGAAACATGCACTCGTGCAGAAGCATTTACAGCTGCACTACTGTATACTGGCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTATCCTACCCATAAAAATACTAAAAAGTTCGATGACGACCGAATTTTACCTGGTAACAAAATGAACCAAGGAAGAGAGCAATTTCCAGTCCATAAATAAAACTAGCATCAAAATGCCCAACAGCAGAGACCCTAGCTGCCAATAAGACATCAATTTTCTAATGTTTTGCCTTAACTAAATGTGCCTTTCAGCTGTGACTTCAAAAATACGAGACTCAGGTTTCTTATGGGTAACGCGCCAAGATAACTATATATAATTACAGAACTAGAAAACAGGGGCAATGCAAGAGGCAGAAATTGCATCATGTCAGCTGTTCAAAGCCGGAGGTCGAAACATTATTTGGTTTTGGAGTAGGACAACCAGTATGCTTGTTGGTTTTGTTCTTCTCCTCTGCCTGTGTGGAAGTCAATTTCTCGCTGTGAAACAAACTTTCACCCAATTCTGACTCATGTTTCCTCTTCACTTTCTTTTTTGGCACCGCATCTGCTCCTCGTGGATCAACAGAGCTGCCAGAAACTCCCTTTAGCTTCTCCTGCTTTAGACGATTCACATCAGAACCATTAGCTATGGAAACATGCACTCGTGCAGAAGCATTTACAGCTGCACTACTGTATACTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E547963" ref_strand="-" ref_description="SGN-E547963 	[TUS-56-L6]">
      <seq>agaaaagattgaagttgatcattcttcaaattcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggagcagatgcggtgccaaaaaagaaagtgaagaggaaacatgagtcagaattgggtgaaagtttgtttcacagcgagaaattgacttccacacaggcagaggagaagaacaaaaccaacaagcatactggttgtcctactccaaaaccaaataatgtttcgacctccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctcttaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="41654" stop="40464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41354" g_stop="40759" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="622"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E547963" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41354" e_stop="40759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTG</genome_strand>
        <mrna_strand>AGAAAAGATTGAAGTTGATCATTCTTCAAATTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E230789" ref_strand="-" ref_description="SGN-E230789 	[cLEL-35-N24]">
      <seq>ccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="41316" stop="40467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41016" g_stop="40767" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="267"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E230789" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41016" e_stop="40767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCT</genome_strand>
        <mrna_strand>CCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E622866" ref_strand="+" ref_description="SGN-E622866 	[73238]">
      <seq>tgttgagggcctggatgaagatgctggtccacaagtcagaaagttgtatgcagagcttgcaggatgttggccaaatggatttatggacaatcatggtattaaacgtgctatatgtagagcaaaagataggagaagagctttgcacgcacgacgtaaggacggagagaaaattaggaggaacaagttattggccacaaaggaaggggatactagtagagtagatgctggacctattgcccagtcggtgcatatccaagaaaagattgtagttgatcattcttcaacttcaacaaacaagccagtatccacaagtgcagctgtaaatgcttctgcacgaaatcatgtctccgtagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggaccagatgcggtgccaaaaaagaaaatgaagaggaaacatgagtcagaattgggtgaaagcttgtttcacagcgagaaattgacttccgcacaggcagaggagaagaacaaaancaacaagcatactggttgtcctactccaaaancaaataatgttgcaacctccggctttgaacagctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="42624" stop="40697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42434" g_stop="42428" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42427" i_stop="42320" i_length="108">
            <donor d_prob="0.574" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42319" g_stop="42272" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="55" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42271" i_stop="41869" i_length="403">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41868" g_stop="41767" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="157" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41766" i_stop="41453" i_length="314">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41452" g_stop="40997" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="613" r_length="456" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E622866" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42434" e_stop="42428"/>
          <exon e_start="42319" e_stop="42272"/>
          <exon e_start="41868" e_stop="41767"/>
          <exon e_start="41452" e_stop="40997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGGTAGTTTACCCCTCTCCCCCCTTCCCACCTCAAAACAAAAATGTCCTCGACAAGATTGCTTCTTACTTGAAACAGTTTGTGCTGGAGATTTACTGTCTGTACCTGTAGGGCCTGGATGAAGATGCTGGTCCACAAGTCAGAAAGTTGTATGCAGAGGTAAGGGGACATACAAAGCGTAGCTATTTCTTGAAGAAGGAACCTCATTTTGCATGTGTAGTCTTTAATTCTGTTATCTACTTCATTTGCCATTGGGCAATCTTGGAAATTTTTGTACTTGATGCAAACTAAATTCCAAGTGTATCTGAAGGTAGACTCTAGATCAGAAAACAGTTTTTGGATGCATCTAAGAGTCTGTTCTCTATTGTGGTGGTCACTTATCGGTGTATTTTCTTCTTAGCTTTCATAAAAAGAAATCTTCCACTGCTAAGCTCTGATGTATGTTCAGAATTTTGGCCACAAAATGTGAATTAGGAGCTGCTTTGACATTTGGGGGTTTCCGAACTCTTCATAGTTTTCCCTGGGCTAGTTTTTAACTGTCATTGTTCTGTTTTTCTTGCAGCTTGCAGGATGTTGGCCAAATGGATTTATGGACAATCATGGTATTAAACGTGCTATATGTAGAGCAAAAGATAGGAGGAGAGCATTGCACGCACGACGTAAGGTAAAAAATACCATGTTTATCTTTATTTTATTTTCTTTGTTTAGTTCATTATTCATTTTCTTGTAGCTCTTAAATTGTGAGCTTGCGTTCATAGTGGAGCTCTGTTTTAGTTAAATGTATAGGATTTATTGGTCTATTTCTGATGGTGTCTGAGATTCCATTAAGAAATTAAATTTCACATAGTAATCACTCCTTAGTTGTTCTCTTCGTCATCTCTCAGTGTATTACACTAAAATGCAGTTTCAAACCTGTGCCTAAATGCTTTCTGTAGCTTTTACAATGGGTAAAAAGGTTCATTTGGTTTTTTTATGTAGGACGGAGAGAAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACA</genome_strand>
        <mrna_strand>TGTTGAG............................................................................................................GGCCTGGATGAAGATGCTGGTCCACAAGTCAGAAAGTTGTATGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGGATGTTGGCCAAATGGATTTATGGACAATCATGGTATTAAACGTGCTATATGTAGAGCAAAAGATAGGAGAAGAGCTTTGCACGCACGACGTAAG..........................................................................................................................................................................................................................................................................................................................GACGGAGAGAAAATTAGGAGGAACAAGTTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATCCACAAGTGCAGCTGTAAATGCTTCTGCACGAAATCATGTCTCCGTAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGACCAGATGCGGTGCCAAAAAAGAAAATGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGCTTGTTTCACAGCGAGAAATTGACTTCCGCACAGGCAGAGGAGAAGAACAAAANCAACAAGCATACTGGTTGTCCTACTCCAAAANCAAATAATGTTGCAACCTCCGGCTTTGAACAGCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E300013" ref_strand="+" ref_description="SGN-E300013 	[cLEW-11-L15]">
      <seq>ggaacaaattattggccacaaaggaaggggatactagtagagtagatgctggacctattgcccagtcggtgcatatccaagaaaagattgtagttgatcattcttcaacttcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="41733" stop="40927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41433" g_stop="41227" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E300013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41433" e_stop="41227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGC</genome_strand>
        <mrna_strand>GGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E265463" ref_strand="+" ref_description="SGN-E265463 	[cLEI-9-H2]">
      <seq>ttctgaaataccaacaacaaagaaagctgcagatacccaagatatgtcggagcgatctccatcagcatcattgcgtggcaattctgcagaagaaaaagaccttgaccagcagaaaattggagtcacccaatccaagaatctaggtgacaaattaaaagatggttctgaaatatctggaaaatcatctcagaggttacatgacagaagttcttatgctcaagagaaatctaatgttggaagatcagtaaatatttctgacggaatagaccagtctgttcagcgccgtgatgagaagtttaatgtcagtggctttgagggaaagaactcaggtcagactatgaaagatcctgctatgcagagaaaggaaggatcgagtggtagaccaaaaggtacaatgcttgagaaggccatcagggatttggagaagatcgttgcagaattaaggccaccaaatatggaggttcaggatgctgataattcatctcaggctatcaaaaggaggttaccacttgaaataaagcagaggctggcaaaagttgcccgactggcgcaagctagtcatggaaaaatatccaatgagttaattagtcgtttaatgagtattgtcggccacttgatacaagcttcgcacattgaagcggaacttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="47510" stop="44322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47210" g_stop="46871" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46870" i_stop="45201" i_length="1670">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45200" g_stop="45101" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="440" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45100" i_stop="44935" i_length="166">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44934" g_stop="44825" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44824" i_stop="44715" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44714" g_stop="44628" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="638" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E265463" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47210" e_stop="46871"/>
          <exon e_start="45200" e_stop="45101"/>
          <exon e_start="44934" e_stop="44825"/>
          <exon e_start="44714" e_stop="44628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATGGTGAGTTGTTTACTGTCCTCTCCCTGCGATAGTGCGTTTCTTTGCTATCTTATAAATGCTTGATGTCATGAATCATTTCTCTATGGTATTTTTTTTATAACCGTGGTGTCCGGCCAACTTGCCTGCACCTCAGACCTTCACCTGAGATCTCATGGTTCTCAGCCCTCCTAATTGACCACTAGGCCACACCCATGGGTGCCATTTCTTCGTTGTATTTATAGATTGATTTCTAATGATTGCTTGAGAACATTGCTGAAGGAAATTTTTTTCTAGTAGATCATCGTTCAATGTAGGGATAGCACTTATTAATGATCAGGTGAAGCTTTTGAAATGTTTACAGCAAAGTAGAGCTGCACCTATCATGAGCCAAATAATGTCAATAGATGCTAGGAAAAACATGCTGCCATGAAATCTTTGGGTCTCTTCTGGTGTTATTCCTTCATGGTCTCTACTAATCATTCCAAATCAAACCAGTTTCCTCTAAAAAGGTACTCCCACCGTCCCAATTTATGTGACAGCAAGTGAGGATAACAGATAAAGAATCAGTAGAAACCTTGAGATTGATAAAAAGAGAAGAAATTAATCTCTTTAGCCAGTCCCCAAGAGAATGACATCTTTCTAATTTAGTAACAGTTTGACATTGAACTTTTCAGTTTACCCTACGTGAGATTTTTATAGCCACATAATCTATGACTTATTTTCGATTACAAGTTTCAAAAGTTCTTCTCATTCTGAAACTTCGTGCTTGGCCAAACACCTTTGCTTTAAATTGGGGAGTACTAAATAGGTCTTAACCTTAACTAGCAAAAATCAAATGTAATTGATGAGAATATTGACGTTAGACTTAACTCAAACCCAAAAGCTAAAGGTGAGGATTGTCCGTACTACAATTATACCCTTAACAAATACAAGATTCTACATCCTTGCAGACCTATGACTTGGAGTATGGATAACACTATGTTGGGGCTTAGCATTAGATATAACAATATGAGGGATGGGTTTGACTTTGTTTACATGATAAAAGCATGGACCTAGTCTGCTCTAACAACTTAAAACATTTAAATGTGATGGTCACATAATTCAACACTGTATTGGATAAAACAGTAAGTTGGTTCTGATTGCCATCCGTTATCAAAAAGAACTTTTTTTTGTGCTTTGACATTATGATTAACATATATATTAATCAATATGACCTTCTAATGGTCTGGTAAGTCCTTCTCCCCCTACTCTGTCAGTTTTTCCTGTGGCTACTGGCAACCATTAAATTTGCAGTTAAAATGAAAACATGCATACATAACGATCAATCCCCTGTAAACTCCCCGGACAACTTTTTGAATTTTGTTAGCTCCTTATCTTTAGTATATGGCTCACGGTAATGGTGCTGACCTGTTCACTTTTGATCTCACTCTTTGTGTACTATGTTCATCTTCTTGATGTCTTTAATGAAATCTATTACTTCATCAAAAACAATCAAGAAGAGCTCTAGGTCTAGAAGTCCTTTCCTCTCCATTCAGTTGTTTGCCTTGAATCTCAGATCTGACCACTTGACCCTGCACCATACAACATTCAGAGACACACGTATGGTGCAGGGTTATGCAGTCATCTGAGATTCCTAATAAGCTTTTGTTCTTGCTGTAACTGACGCTCAGGTGCTCCCTAAAACTATACAGAAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAATGTATGCCCAAAACTTTTGACATATGTTTTTCTAACCGATAATTCATTTTCTTATGCATTGGTCGTCTATTTAATTTTTGAAAATATCACAGTAAGGCCGAGGTTCAGATGTCGTTTCTATTTGATAATAACTAATTTTTTTTACATTCAATCTCAAATTATCACAGTAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCGGTATAGACTAAGCTATATGGTCTAATTAGTTGTTATCTTTTTGGTTGATGTATTTACTTATATTCCATAGCGTACTTATCGAAGTCAAATATTTCTGTTGATGGTTGCAGCAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATAC-AGCTTCGCACATTGAAG</genome_strand>
        <mrna_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCGATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT......................................................................................................................................................................TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG..............................................................................................................CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAAGCTTCGCACATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E578212" ref_strand="+" ref_description="SGN-E578212 	[LE12AF11]">
      <seq>caaattttcctcttctttagggtttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattagctccgggacaacctgctgataaggaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaagattgaacgcttatatgtgggcaaacaaagtgatgatgaggaagatcttaatgatttcccagatgacgatgaatatgacactgaagattctttcatagatgatactgagctggatgaatattttcaggttgataactcagcaataaagcatgatggtttctttgtcaatcgtggaaagttggagcgcattgagccagtttcaccaaagaatcagcaaccaaaaaagaggagaagaaaagatctggcaaaaagccatgttggggatgatgatggacacaatccaagtaaacctgntaaagtcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="54948" stop="47020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54648" g_stop="54283" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50509" g_stop="50423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="453" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50344" g_stop="50252" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50251" i_stop="50092" i_length="160">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50091" g_stop="50015" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="623" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50014" i_stop="47436" i_length="2579">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47435" g_stop="47320" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="739" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E578212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54648" e_stop="54283"/>
          <exon e_start="50509" e_stop="50423"/>
          <exon e_start="50344" e_stop="50252"/>
          <exon e_start="50091" e_stop="50015"/>
          <exon e_start="47435" e_stop="47320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTGGTCGGTCACATCAAGTTCCTTAACCTTATATACCTTATACAAATATGTGTTATTTTGTATCCGAATGATTTACAAGCATAGTCAATATTTTGCAACTTTGTGCAGGCGGCATCTATATGTTGTAGTCAAAGTACTTAGTACATTGTTTCTGGTTATGCAGGATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCATGTGAGTTTTTTCTTGAGATTTTTAAATAATATGACATGTCTAAACACCACTGTATATAATTTAACCAATTGTTCACCCTTTATCCGGCATCCAAATTTAGTTTTTGTATCTATTTTAAAGTTTTAAATTAGTTTAAAAACAATGTTTGTTTTGATTGTTACCTTTTTTTTGGTATCATATCGTTTCAATCCATTGTTAAGTAATGATGAAAAGTCTCATTATGAACTTTACCTTACTCAAAAAAAGAAGAAGAGAAGTTTCAGTATATGTAACAATTGATTTGGTTTGATCTCATCATTACCTTAATATTTCTTTTCATTTTGTCTTTCTTTATTATTTATTAATCTTATTTTATCTTTTACATTACCTTTTCATTTTAGCTCCGTCTCTTATCCTACTTTCCTTGTGGGTTTATCATTCAAATTGCCGACGTGTGACATTATGTTACGACGGAGAATGATATAATCTATCCAAACATCACGTTATAATACAACACAACGTAGTACATACGTCATAAAACAATACGTGACAAAATTACTCCGCAATTTCATGTTTCAAGTGATTGGATGATTATGCTACATGTGCTTGTGCAACCGAGGATCTATCAGTTACATGTTTCTTCGTTGCACTGTTGCCACCGACCTTTGGAACATGCTCTTTTCTCTCTTTGCTAACATAAAGCGAGGCGAAGCGCTTAATAGGTTTCAAGCCTCACATCAGGGCTTGTTATGACCCACATATACTCTTACGTTTTACCATAAGAAGTAGTTTTTTATTCTCTCCCCAATTCAAGTTCACCCCCAAATCTGGTAATCCCTGCAAGTATTGATGGTTCCTCTTTTACGTGATGTTCAATATTCTCTTAATGTTGCTTTCTTCTTATTCTTCTTGGATTTAATCCGACTCTTCTCTTCTTCTTTATTTCTTGTTTACTCCTTCCCTGGTTTCTTCTCCTCATGTACGACTCTTTTTCTTTTGCCACTTTTACTTTTGGGGTTCTTTTTTACTCTTCTCTCTCATTCTGTCAAAATAATTCCGTTCCAATTTTTCTTGTTTGTTCTATCTATTTCTTGTTTATATTTTGAATTTTTTATTCATCATGTTCTAGTAATGTTTAATTAGGAAAGGGAATCATTTTTTAAGAAGGTAAGTAGGTTTATATTGCAAAAGAGAAACTTGCCAGCATCAAGTTGGTGCTAATAGGATAAAAAACCCACCCGCTTGCACGGAATCAATGAAATCTAACATACTATCTTCATTCTTTATAATCTACACCAAAATGCTAAAAGCCGTAAACAAAAGTGGAGCCAGGTTTTGATGTTTATGGATTCGGATAGGGGTGTTAAATGAGCAGGTCGAGTCAGATATGGGCTGGTTGAAAATGAATTGGGTGAAAACGAATAATTTATCCAGCCTACCTATTATCAATATTCAATATATATTTTTAAAAAGGTAACAAGTCCTAGCCAACTTCTTTCTGAAAATATGATTTTGGAAATGATAGTCTCCTTTTGTTTTAGAGAGGAATTGTCTTTTGCAACAAAGGAAAAAATGATGCAGAGTGGGTTTAGGGAGGAAATGTCTTATCTTCTTTAAAAGGAGAGTAAAACATATTACCTGTAAAGGAGAAGACTTTGGGAGCAAGTGGGTTTCGAACCCACATATCTGCAATACAAAGCTTTACTACCCTAATCCATATATATATATATAATTTTTTATACTAACGCTTGTACTATAGGGTCCACGCAAAAACTATTGGGTTCGTCCAAACCCGCATAATGTACTGTAGCTCTCCTGGCCATAAACAATTGAAGTTAAGTTGTTGTACACTAATTGACTTTCCTTTCAAAACATAGTTAATTTCTTTCCTTGTGTGAGGAGATTAGGTTCTTGCAATATTGGAAATGTTTGCTTTTGTCTAATCCTGTTATTAAAGGTTTGGTTAAGCCCCGAAGCAAGGTCCACAACGTGTTGAGCACTTTACCTTGCTTAATTTGCTCCTTAGAGTTGTCATAAGGTTCTAAAACATACTTTTCCTTTCCAATGAACCTCTTTCTAGAGACAACACTAAACAGTTGATATTTCACTTTATCGTAATTATTATTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAAATTATTAGTTTTGGACTAAACATATATATATTTGGACTTTTTCTCCCTTGGTGCCTTTTTTCATTGAAGTTCATACTTTATTTGCGTTTTGCGCTTAAGCCCCAACAGACCTTGGAGTTTTTTTTATGCTATTTACTTTTTCTATGGTTTAAACCTCTGCATCTCTTTCCCTAAGAAATTCTCTTTCCTTGTTCAGTAAGTTATGTTTTCCCTTTGATTTTGGAATTCAGATGTATATTTCTTTTGGGACTTTGGTTTAGCTTCTTTTTCTCCATACGGATGTCCTTGTTCTTTCCCTGGTGATAGGTTGTTCATAACACTAGTGAATTTGTAATTATGGCTGCAAAATGGGAAGGATTTATTTGCTAATTTTTCTTAGAAATGAAAACTGGTACTTTCATTTGGGCACTTCTAACTGACATGATTTTCTTTTAGTGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</genome_strand>
        <mrna_strand>CAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG..............................................................................GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG................................................................................................................................................................GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGNTAAAGTCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E306941" ref_strand="+" ref_description="SGN-E306941 	[cLEY-11-K6]">
      <seq>tcaattctaaaattttctcttttcaatttggtaccaaattttcctcttctttaggggttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattagctccgggacaacctgctgataaagaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaagattgaacgcttatatgtgggcaaacaaagtgatgatgaggaagatcttaatgatttcccagatgacgatgaatatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="54982" stop="49982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54682" g_stop="54283" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50509" g_stop="50423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="487" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50344" g_stop="50282" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="550" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E306941" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54682" e_stop="54283"/>
          <exon e_start="50509" e_stop="50423"/>
          <exon e_start="50344" e_stop="50282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACT</genome_strand>
        <mrna_strand>TCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGGTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAAGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG..............................................................................GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E390711" ref_strand="+" ref_description="SGN-E390711 	[TUS-46-N14]">
      <seq>ttcaattctaaaattttctcttttcaatttggtaccaaattttcctcttctttagggtttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattatctccgggacaacctgctgataaggaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaaaattgaacgcttaatatgtggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="54983" stop="50121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54683" g_stop="54283" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50509" g_stop="50423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="489" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78">
            <donor d_prob="0.917" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50344" g_stop="50340" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="494" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E390711" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54683" e_stop="54283"/>
          <exon e_start="50509" e_stop="50423"/>
          <exon e_start="50344" e_stop="50340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTT-ATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAA</genome_strand>
        <mrna_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTATCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAAATTGAACGCTTAATATGTG..............................................................................GTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E539198" ref_strand="+" ref_description="SGN-E539198 	[TUS-58-N8]">
      <seq>ggaaaggctgcatttgagatcttcaataagtttggggatttaggatgtgcaccaaatgctgatacatactattttaccattgaagcactttctaggcgatcgatttatgattgggcttctactgtttgtgagaagatgcttaatgctgataagttgcctggtgctgagaaagttggaaagattgtttcttttctgtgtaaaggaaataagtgtagagatgcacatctggtttatttgtcggcaaaggagaaaaatattaatctgcctgtatcttctattaagttgttgatcagctctctttgtcgcaaagatgaaggcgttaaacttgcaatggaggtgttggatgagttccccaaagaagagcggaagcatgccattaagtcattctcacatgtcatcaatgggctgtgtagggcaaatgatgtaacaggggaaaagcagctgcgttcctattgcagtgaagacattgacgaggccaaaaacttgctcttaaaaatgatagatgcaggtccaccacctggcaatgcagtctttaatacagttattaatgcgctctccaagaagggagaaatgggagaagctaggaaactattgaaggtgatggagggtagaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="56853" stop="58067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57153" g_stop="57767" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E539198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57153" e_stop="57767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTATGAAACTATTGAAAGTGATGGAGGGTAGAGGT</genome_strand>
        <mrna_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTAGGAAACTATTGAAGGTGATGGAGGGTAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E278660" ref_strand="+" ref_description="SGN-E278660 	[cLER-10-L3]">
      <seq>ggatttaggatgtgcaccaaatgctgatacatactattttaccattgaagcactttctaggcgatcgatttatgattgggcttctactgtttgtgagaagatgcttaatgctgataagttttttggtgcggagaaagttggaaagattgtttctttggggtgtaaaggaaataagtgtagagatgcacatctggtttatttgtcggcaaaggagaaaaatattaatctgcctgtatcttctattaagttgttgatcagctctctttgtcgcaaagatgaaggcgttaaacttgcaatggaggtgttggatgagttccccaaagaagagcggaagcatgccattaagtcattctcacatgtcatcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="56888" stop="57856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57188" g_stop="57556" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E278660" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57188" e_stop="57556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGG</genome_strand>
        <mrna_strand>GGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTTTTTGGTGCGGAGAAAGTTGGAAAGATTGTTTCTTTGGGGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E539195" ref_strand="-" ref_description="SGN-E539195 	[TUS-58-N8]">
      <seq>ggtgatggagggtagaggtttgaaacctgatgtgtacacttatagtgtaatcatgagtggttatacaaagggaggtgagatggaggaggcctgcaagattttgaatgaagccaaaaagaagcactcctgtctaagtcccgtcacttttcacacaattattcggggctatttcaagctcgaacagtatgacaaggctctggaactattgggagatatgaaggagtatggagttcagcctaatgcggatgaatataacaaatttattcaatctctatgccttaaggctttagattggacaacagcagagaaactgcttgaggagatgaaggagaatggggtgcatctaaatgcaatcacaaagggtctcataagagcagttaaggagttagaacaggaagaagtaggaacaaatgaaataacggctacagcatagtaggtaccctatctctgcctttagctgtagggatgtatcttctgtttcttttttatgttatggtctgagataatagcaggcttaaaactgtaacacctgcattttgtatgatgaacaaccattagaattcttaagaaaggatattttttttgttcattttaaaataatgtttgctgccaaatctcttgagttgaatggaagttccgtaactaagactttcaaaagggaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="57450" stop="58716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57749" g_stop="58407" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="675"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E539195" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57749" e_stop="58407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGT-GTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</genome_strand>
        <mrna_strand>GGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E424179" ref_strand="+" ref_description="SGN-E424179 	[STM-43-M7]">
      <seq>gttgtgtgaaaaaaattcccttttcttcttcttagcttgaaaatctctatcaaattcagcaatgcggcctcctagccgcagcgtatttatctcttttcttgttatctccctcttgtcgtaccagatctcgaatgtggtaggacaagaaggtgacaacgatatcgatttagatgatattaagactaatgctagtaagttgagttttgaaaacctaaagattcgcgatgcttacatcgcgttgcaatattggaaaacagcaatgttttctgacccttttaacttcacagctaattggacaggacctgatgtttgttcgtatggtggagtgttttgtgctccttcgttaacggatgattcgattagagttgtagctggcattgatcttaatcatgctgacattgctggttcattagttgcagaacttggtcttcttacagatctggttcttttccatctcaactcgaatcgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="65628" stop="66693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65921" g_stop="66393" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E424179" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65921" e_stop="66393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAACAAAAACTTCATTTTCTTCTTCATAGCTAGAAAATCTCTATCAGATTCAGCAATGCGGCCTCCTAGCCGGGGCGTATTAATTTCTTTTTTCGTTATTACTCTTTTGTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTT</genome_strand>
        <mrna_strand>GTTGTGTGAAAAAAATTCCCTTTTCTTCTTCTTAGCTTGAAAATCTCTATCAAATTCAGCAATGCGGCCTCCTAGCCGCAGCGTATTTATCTCTTTTCTTGTTATCTCCCTCTTGTCGTACCAGATCTCGAATGTGGTAGGACAAGAAGGTGACAACGATATCGATTTAGATGATATTAAGACTAATGCTAGTAAGTTGAGTTTTGAAAACCTAAAGATTCGCGATGCTTACATCGCGTTGCAATATTGGAAAACAGCAATGTTTTCTGACCCTTTTAACTTCACAGCTAATTGGACAGGACCTGATGTTTGTTCGTATGGTGGAGTGTTTTGTGCTCCTTCGTTAACGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGACATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E451855" ref_strand="+" ref_description="SGN-E451855 	[cSTS-14-M12]">
      <seq>tggttttggtgttggtgttggccttggctttggtttcgtcgatggagacgtagcatatgggctataacacttcgatttcttacaatcatacggttttgcatcatccgaagagcattctttagcagatctttgattcttctttccaaccgaatacagttctcctgaaccatcaccagatctagtcgcagcacaaaccggagcctccccagtgaagtaattgaacgaatacgtaaagttctgcaaccttggaagttggcaaatgctagctggtataaccccagtaagcttgttgtgagccacattgagttcctccacactcctcattttgctcacagttaatggcaatgagccttgaatcttgttgaagctaacatcaaacactgtcaacttcttcaacaatccaatctccattggcaaacacccagtgaggttatcattcatcaatatcaactcattcaacgttttccccattttcccaatactcgcgggaatacaccctccaagatcgttattagcaaacacaagaacagaaacaggggagttacccaagttctccgggatgccaaaacggaatctattgtcattcagaaacaatgcatccaaatctttatcgaacaattcggaaggaactggtccttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="67463" stop="66234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67172" g_stop="66534" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E451855" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67172" e_stop="66534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAA-CG-ATACAGTTCTCCTG-GCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAA</genome_strand>
        <mrna_strand>TGGTTTTGGTGTTGGTGTTGGCCTTGGCTTTGGTTTCGTCGATGGAGACGTAGCATATGGGCTATAACACTTCGATTTCTTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACCGAATACAGTTCTCCTGAACCATCACCAGATCTAGTCGCAGCACAAACCGGAGCCTCCCCAGTGAAGTAATTGAACGAATACGTAAAGTTCTGCAACCTTGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTGAGTTCCTCCACACTCCTCATTTTGCTCACAGTTAATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACTGTCAACTTCTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTCGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACAGAAACAGGGGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAGAAACAATGCATCCAAATCTTTATCGAACAATTCGGAAGGAACTGGTCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E392930" ref_strand="+" ref_description="SGN-E392930 	[TUS-37-B4]">
      <seq>gttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggtgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttgccaatggagattggattgttgaacaagttaaccgtgtttgatgttagcttcaacaagattcaaggctcattgccatcaactgtgagcaaaatgaggagtgtggaggaactgaatgtggctcacaacaagcttactggggttataccagctagcatttgccaacttcctaggttgcaaaactttacgtattccttcaattaggggggggggggaagctccagtttgtgctgcgactagatctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="66246" stop="67306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66546" g_stop="67006" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E392930" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66546" e_stop="67006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTA-CTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGA</genome_strand>
        <mrna_strand>GTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTAGGGGGGGGGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E344695" ref_strand="+" ref_description="SGN-E344695 	[cTOF-14-N22]">
      <seq>ttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggtgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttgccaatggagattggattgttgaacaagttaaccgtgtttgatgttagcttcaacaagattcaaggctcattgccatcaactgtgagcaaaatgaggagtgtggaggaactgaatgtggctcacaacaagcttactggggttataccagctagcatttgccaacttcctaggttgcaaaactttacgtattccttcaattacttcaccggggaagctccagtttgtgctgcgactagatctggtgacggccaggagaactgtatcgttggaaagaagaatcaaagatctgctaaagaatgctcttcggatgatgcaaaaccgtatgattgtaggaaatccaagtgttatagcccttttgctacatctccttcgacaaagccaaaaccaaaaccaaagccaagaggcccaccaccacctacttggaagtcttcgggttcgcataacaagcgatctccgncgccacctaaatcaactcctcttccttcaccagcaccttacaaaaagtccccaacctatcaacatagaagtccaccaccacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="66247" stop="67604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66547" g_stop="67304" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E344695" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66547" e_stop="67304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</genome_strand>
        <mrna_strand>TTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGNCGCCACCTAAATCAACTCCTCTTCCTTCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E424178" ref_strand="+" ref_description="SGN-E424178 	[STM-43-M7]">
      <seq>cgaacccgaagacttccaagtaggtggtggtggtcctcttggttttggtgttggtgttggctttggctttggtttcgtcgatggagacgtagcatatgggctataacacttcgatttcttacaatcatacggttttgcatcatccgaagagcattctttagcagatctttgattcttctttccaacgatacagttctcctgaccatcaccagatctagtcgcagcacaaaccggagcctccccagtgaagtaattgaacgaatacgtaaagttctgcaaccttggaagttggcaaatgctagctggtataaccccagtaagcttgttgtgagccacattgagttcctccacactcctcattttgctcacagttaatggcaatgagccttgaatcttgttgaagctaacatcaaacactgtcaacttcttcaacaatccaatctccattggcaaacacccagtgaggttatcattcatcaatatcaactcattcaacgttttccccattttcccaatactcgcgggaatacacccctcaagatcgttattagcaaacacaagaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="67499" stop="66344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67155" g_stop="66644" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="568" r_length="512" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E424178" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67155" e_stop="66644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAA</genome_strand>
        <mrna_strand>TTGGCTTTGGCTTTGGTTTCGTCGATGGAGACGTAGCATATGGGCTATAACACTTCGATTTCTTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGACCATCACCAGATCTAGTCGCAGCACAAACCGGAGCCTCCCCAGTGAAGTAATTGAACGAATACGTAAAGTTCTGCAACCTTGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTGAGTTCCTCCACACTCCTCATTTTGCTCACAGTTAATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACTGTCAACTTCTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTCGCGGGAATACACCCCTCAAGATCGTTATTAGCAAACACAAGAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E559585" ref_strand="-" ref_description="SGN-E559585 	[19104]">
      <seq>gatgctcgtatgatggtgttgatggtgctgatgatggtgtttttggatgttcgtatgatggtgttgctgctggtgttttaggatgctcgtatgatgctgttggtgttggtggtgatggggtttttggatgttcgtatgatggtgttggtggtggtggtgatggggtttttgggtgttcatatgacggtgttggtggtggtggtgatataggcttgtaagtaggtggctcgtgatacaccgggggtggtggagaataataaactggtggtggtggggacgatggagatgggtggtaatatacgggtgagggtggaggaggtgaatgatgagttacaggtgaaattttgtgagtaggtggtggtggacttctatgtcgatacgctggggactttttgtaaggtgctggtggaggaagaggagttgatttaggtggtggcggagatcgcttgttatgcgaacccgaagacttccaagtaggtggtggtggtcctcttggttttggtgttggctttggtttcgtcgaaggagacgtagcatatgggctataacacttcgatctcttacaatcatacggttttgcatcatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="68067" stop="66766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67731" g_stop="67573" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.805"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67572" i_stop="67507" i_length="66">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67506" g_stop="67066" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="588" r_length="435" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E559585" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559585" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67731" e_stop="67573"/>
          <exon e_start="67506" e_stop="67066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCG</genome_strand>
        <mrna_strand>GATGCTCGTATGATGGTGTTGATGGTGCTGATGATG---GTGTTTTTGGATGTTCGTATGATGGTGTTGCTGCTGGT-GTTTTAGGATGCTCGTATGAT-G-CTGTTGGTGTTGGTGGTGATGGGGTTTTTGGATGTTCGTATGATGGTGTTGGTGGTG..................................................................GTGGTGATGGGGTTTTTGGGTGTTCATATGACGGTG-T--TGGTGGTGGTGGTGATATAGGCTTGTAAGTA---GGTGGCTCGTGATACACCGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACGGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTCGATACGCTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGTGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGTCCTCTTGGTTTTGGTGTTGGCTTTGGTTTCGTCGAAGGAGACGTAGCATATGGGCTATAACACTTCGATCTCTTACAATCATACGGTTTTGCATCATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E287932" ref_strand="+" ref_description="SGN-E287932 	[cLES-7-C17]">
      <seq>gaacacccaaaaaccccatcaccaccaacaccatcatacgagcgggcaaaaggaccatcaccaccaacaccatcatacgagcatccaaaaaccccatcaccaccaccaccaacaccatcatacgagcatccacaaccccaatcaccaccaccaccaccaacaccatcatacgaacacccaaaaactccatcacacccaaccccacctaccccaccttgtaacgaaccaccacctccacctcctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccacctccatcaccatctcctcctcctcccacttactactactcatcaccaccgccaccatcaccatcacctcccccgcccacttactcttctccgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtctcctacgcatgtccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattcatttttttttatgaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="67254" stop="68411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67554" g_stop="68111" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E287932" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67554" e_stop="68111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</genome_strand>
        <mrna_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCGGGCAAAAGGACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATGTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E288088" ref_strand="+" ref_description="SGN-E288088 	[cLES-7-E1]">
      <seq>gaacacccaaaaaccccatcaccaccaacaccatcatacgagcatgcaaaaacaccatcaccaccaacaccatcatacgagcatccaaaaaccccatcaccaccaccaccaacaccatcatacgagcatccacaaccccaatcaccaccaccaccaccaacaccatcatacgaacacccaaaaactccatgacacccaaccccacctaccccaccttgtaaagaaccaccacctccaccttctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccaccttcatcaccatcttctcctcctcccacttactactactcatcaccaccggcaccatcaccatcacctcccccgcccacttactcttcttcgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtgtcctacgcatgtccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattcattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="67254" stop="68402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67554" g_stop="68102" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E288088" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67554" e_stop="68102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTT</genome_strand>
        <mrna_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATGCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATGACACCCAACCCCACCTACCCCACCTTGTAAAGAACCACCACCTCCACCTTCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTTCATCACCATCTTCTCCTCCTCCCACTTACTACTACTCATCACCACCGGCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTTCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTGTCCTACGCATGTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E482493" ref_strand="+" ref_description="SGN-E482493 	[cSTD-22-K10]">
      <seq>aaaaactgacctgatagcctctcagcttcgaaccagttgcaaaaaccctaatctcaaagttcgctacggcctagggttccgtcaaagctaaccagtacttcaccggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagactaacggcacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagacggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggcgacggcgaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="74578" stop="75542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74878" g_stop="75242" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E482493" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74878" e_stop="75242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTGACTTGATAGCCTCTCAG-TTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTAC---ACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCA</genome_strand>
        <mrna_strand>AAAAACTGACCTGATAGCCTCTCAGCTTCGAACCAG-TTGCAAAAACCCTAATCTCAAAGTTCGCTACGGCCTAGGGTTCCGTCAAAGCTAACCAGTACTTCACCGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACTAACGGCACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGACGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGCGACGGCGAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E340894" ref_strand="+" ref_description="SGN-E340894 	[cTOF-5-E21]">
      <seq>acttgatagcctctcagtttgaaccagtttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagagaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="74586" stop="82088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74886" g_stop="75391" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E340894" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74886" e_stop="75391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGAT</genome_strand>
        <mrna_strand>ACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E465312" ref_strand="+" ref_description="SGN-E465312 	[cPRO-20-B4]">
      <seq>tagcctctcagcttcgaaccagttgcaaaaaccctaatctcaaagttcgctacggcctaaggttccgtcaaagctaaccagtacttcaccggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagactaacggcacttctacgaagagcaaagacaaagactataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaacggagagagaccgaagtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="74592" stop="75477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74892" g_stop="75177" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E465312" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74892" e_stop="75177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCTCTCAG-TTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTA---CACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGA</genome_strand>
        <mrna_strand>TAGCCTCTCAGCTTCGAACCAG-TTGCAAAAACCCTAATCTCAAAGTTCGCTACGGCCTAAGGTTCCGTCAAAGCTAACCAGTACTTCACCGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACTAACGGCACTTCTACGAAGAGCAAAGACAAAGACTATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAACGGAGAGAGACCGAAGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E345154" ref_strand="+" ref_description="SGN-E345154 	[cTOF-22-J4]">
      <seq>tcagtttgaaccagtttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="74599" stop="82088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74899" g_stop="75397" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E345154" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74899" e_stop="75397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGATAGAGAC</genome_strand>
        <mrna_strand>TCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E226150" ref_strand="+" ref_description="SGN-E226150 	[cLEL-31-K7]">
      <seq>tttttttttttttttttttttttttttttttttctctggcacgggcacggtcttttgagcttctttctttgtccctctcagattcccgttccctactccgatgcctcgatgacctttccctatctctctccttatccttctctctgatgctttcgccgcccccgcgagactttttgctgctccggcgctctctattgtcgtcgtcggcgtattcctcacttccatctctctcccttcgacgatagcctttctcgctcttctccttctcggcgctgctgttattgcctttgtctttgctcttcgaagaagtaccgtgggtcttttccacagtcttctccagataatcgtactcgccgaagtccatttgcgatgatgctctctgccggttggccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82088" stop="74695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75389" g_stop="74995" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E226150" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75389" e_stop="74995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCTTTCTCTTTCTCCTTTTCCCTTTTCTCTCTGTCACGGTCACGGTCTTTTGAGCTTCTTTCTTTGTCCCTCTCAGATTCCCGTTCCCTACTCCGATGCCTCGATGACCTTTCCCTATCTCTCTCCTTATCCTTCTCTCTGATGCTTTCGCCGTCCCCGCGAGACTTTTTGCTGCTCCGGCGCTCTCTATTGTCGTCGTCGGCGTATTCCTCACTTCCATCTCTCTCCCTTCGACGATAGCCTTTCTCGCTCTTCTCCTTCTCGGCGCTGCTGTTATTGTCTTTGTCTTTGCTCTTCGTAGAAGTACCGTTGGTCTCTTCCACAGTCTTCTCCAGATAATCGTACTCGTCGAAGTCCATTTGCGATGATGCTCTCTGCCGGTTGGCCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTGGCACGGGCACGGTCTTTTGAGCTTCTTTCTTTGTCCCTCTCAGATTCCCGTTCCCTACTCCGATGCCTCGATGACCTTTCCCTATCTCTCTCCTTATCCTTCTCTCTGATGCTTTCGCCGCCCCCGCGAGACTTTTTGCTGCTCCGGCGCTCTCTATTGTCGTCGTCGGCGTATTCCTCACTTCCATCTCTCTCCCTTCGACGATAGCCTTTCTCGCTCTTCTCCTTCTCGGCGCTGCTGTTATTGCCTTTGTCTTTGCTCTTCGAAGAAGTACCGTGGGTCTTTTCCACAGTCTTCTCCAGATAATCGTACTCGCCGAAGTCCATTTGCGATGATGCTCTCTGCCGGTTGGCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E226054" ref_strand="+" ref_description="SGN-E226054 	[cLEL-31-K7]">
      <seq>tttttttttttttttttttgtttttttttttttctctggcacggtcacggtcttttgagcttctttctttgtccctttcagattcccgttccctactccgatgcctggatgacctttccctatctctctccttatccttctctctgatgctttcgccgtccccgcgagactttttgctgctccggcgctctctattgtcgtcgtcggcgtattcctaacttccatctttctcccttcgacgatagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82085" stop="74841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75389" g_stop="75141" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E226054" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75389" e_stop="75141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCTTTCTCTTTCTCCTTTTCCCTTTTCTCTCTGTCACGGTCACGGTCTTTTGAGCTTCTTTCTTTGTCCCTCTCAGATTCCCGTTCCCTACTCCGATGCCTCGATGACCTTTCCCTATCTCTCTCCTTATCCTTCTCTCTGATGCTTTCGCCGTCCCCGCGAGACTTTTTGCTGCTCCGGCGCTCTCTATTGTCGTCGTCGGCGTATTCCTCACTTCCATCTCTCTCCCTTCGACGATAGCCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTCTGGCACGGTCACGGTCTTTTGAGCTTCTTTCTTTGTCCCTTTCAGATTCCCGTTCCCTACTCCGATGCCTGGATGACCTTTCCCTATCTCTCTCCTTATCCTTCTCTCTGATGCTTTCGCCGTCCCCGCGAGACTTTTTGCTGCTCCGGCGCTCTCTATTGTCGTCGTCGGCGTATTCCTAACTTCCATCTTTCTCCCTTCGACGATAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E337589" ref_strand="+" ref_description="SGN-E337589 	[cTOE-11-F5]">
      <seq>tcgagaatcgagcgagagcgagagaaagagatgttgagagacagcgagcgtgactttgaatcacgggacagcagatggattgtttccacatcttaatgggctaacaatgcggaaacccttcaaggctcgattgaagaagtggcttattcccacatatattgagtatgataaggttggcaaagcatatggtgtgaggctgtatcagtttttcaaccttttcttctgttcgaagacgaaaatacattaaccctatatgtcattctttttttgtgaaagcagggaaaagtctcaaaattttggtgctgggcagcgtataatgtcacaacacatactgcattcatattcttaacttgaagatgcttcgaaagttcaaattatcttctagaatttgctctatttggacttgttttctttttctctgggaatgttgcgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="75215" stop="76918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75515" g_stop="75588" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75589" i_stop="76116" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76117" g_stop="76214" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="172" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76215" i_stop="76352" i_length="138">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76353" g_stop="76618" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="438" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E337589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75515" e_stop="75588"/>
          <exon e_start="76117" e_stop="76214"/>
          <exon e_start="76353" e_stop="76618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAGGTTATACTCTTTGCTTCGCTTGTATCTTATGTTACATTATTAGTCTCATGTCATATCAAGTGCTGCTGTTTGTTGCTTCTTAACAATTTTGAGTTTATTTCAAAATGATTAGTGTTTTGATGATAATTATTAATTCAGGATGTAGTGATTGATGAATAGTTTCCAATGTACATCAATATGGTTGGCAACTGCAGTTATGTAGTTGGTTGGCAATTGCAATCATGTAGCTGCTAATGTGGTGAAAGGCATTGCGAAAACTAAAAAGAAATGATCAATATTTGCATCTCATCATCTTTATATCTCAAATTTATATCAATTTTTTTACCGGGCTGTCCACTGTTTTGTAACCCAAAAAACAGAAAATTAGGTAATGGTTGAGTTTAAGTATGTGCTTGAACACACTCTGCTGAGTGTTTCGAGTTCTAGTAGGTTCAAACGGAGAAGGCAATTTAAAGTGGTCTAAGTGCGTAAAAGAGTGTCAGTTTATCCACAAAGAATGTAATATTCTGACTTGGGTTGAAATCGTAGATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAGGTCTGTTAAGTTTCTTTTGGTCTTTGAGATTTTCGCTCACTCTTGAATCCTTCTAATGTTTTTGCATTGATGGATTTAAGGTTACTTTTTTCTTAAATCTGATTTGAGATGTTGACAAATGATGTATTGAATTTCTAGGTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</genome_strand>
        <mrna_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG..........................................................................................................................................GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGGACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E304391" ref_strand="+" ref_description="SGN-E304391 	[cLEX-12-P4]">
      <seq>ctggtggttggatttctatttgcttcctgtttagatatataagatgaaactcattgggggtcattgagcatttatgaggagatcgtgctatattcacctaaacaagtagataaatgaagtttgcattttctactagcctattggtctatccaaaactttagaatcttgttgactttttccacatttgtctccaaagggcttgccttgatgatctatcctgctgcagtagctactccatctaattgagaagaggtgaaatttagcacagcaagggaggctttagaggatgatgattcctcatgtcataatgtaatttgtagaatgtccatgtatttatgcaagtgtggttgagctttgatgtttatagtagttgattaccttcaatgtagcaggtgctacataaagtacttgaaatgaaaatccactccctactatgtgcaacttaaattttacaaccagagcctcatattttttcgttctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="76318" stop="77402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76618" g_stop="77102" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E304391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76618" e_stop="77102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</genome_strand>
        <mrna_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTGTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E570953" ref_strand="+" ref_description="SGN-E570953 	[15619]">
      <seq>ttgtatcaatatgtactatagtttgtgacataggaaagtgaagggtctgcatgagctctagctggttaatgaagtcatgtttaaaataattccttgctatgatctagtgccatacagattctcattatggtctgagtcatttatacaggagattcaaggagaagaaagaaaaaatagaaccagaagctgatccagaaagggaccagagaactgtttttgcttaccagatgcccttgaaggcgactgaaagggatgtgtatgagttcttctcacaagcaggaaaggtgagggatgtgcggttaatcatggaccggaattcaaggcgatctaaaggagttgggtacattgagttttatgatgctatgtccgtgccaatggctattgctttatcaggtcgcttgctttttggtcaagccagtaatggtaaaaccttctgaagctgaaaagaaccttgttcaatcaaccgcgatctggtggtggatcagggttggcggggccaaatgctgcctcagaaagaaaactttatcgttggaaatcttcactttaacatgaccagaattgcaggcttagacacatttcttgaagcttttgggccagtggagcttgttcaatttacctacagattctgaaacaggacattgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="76879" stop="80514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77135" g_stop="77355" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77356" i_stop="77483" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77484" g_stop="77540" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="284" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77541" i_stop="78009" i_length="469">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78010" g_stop="78065" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="340" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79477" g_stop="79705" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="574" r_length="234" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="0.85"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80147" g_stop="80214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="644" r_length="70" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E570953" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77135" e_stop="77355"/>
          <exon e_start="77484" e_stop="77540"/>
          <exon e_start="78010" e_stop="78065"/>
          <exon e_start="79477" e_stop="79705"/>
          <exon e_start="80147" e_stop="80214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCAATATGTTCTATAG--TGTGACATAAGAAAGTGAAGGGT---CATGAGCTCTAGCTGGTTAATAAATTCATGTTTAAAACAATTTTTTGCTATGATCTA-TGCCATACAGATTCTCATCATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGGTAAATAGTTTCAACATCTTCTTTTCTGCCTTTTTCATCTACATACAACATACATAGTCATTTCTAGCTAGGTGGTTTATCTGGTCAAAAGGTTCATTCTCTGATTTATTTGGTTCGAACTTTTGTAGATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTTTTCTCACAAGCAGGAAAGGTTAGTTCACTTGGTCCTCTATATTGCTTTATTGTAAATGAACTATGCTGCTGGCAAATTTATGGTTTGATGATCAATGTGTGCTGGTTATGCTTGTCCTAGAATTTCATTTTCTTGTGGTCCTCTAGAATTGATATGATACTTAATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCATAAACTATTAGTGCATGCAGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCAGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAATGATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATTGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGGTGATTTCTATATTTTGACACTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGGGTATGTCTGTGAAACTCAACTCTCTATCTTACAATTTTGCATTTAATTTTTCCTTGATTTCTTTCTCAAGTAAATTAATGTGCATCTTGCTTGTGAAGTACTCCTTAAAGTCCCAAGGATTTATGCAGTGCAGCTTTCTTTTTGGAGGGGGACGCTAATCATATTTGATTGACTGTAGCATTGGGGCATATCATTTTCCTAATTCAAACTGAATTTTTGTTTGTCTACTAATGATGGTTAATAAAATTGCTGTGTTGAAATCAAACTGTATTCTTGATTTGTTCCTCCGACTTCTGTGTCTCTTTTACACTATGCCTTTAGAAAAACTGTGTTTCTCATGGCTGTTTTTGCTTTTTTATAAATCTTCCTTTTGTTTGGTTGTTCTATGACGTCGGACGCCTAAAATATATTTCCAGTCCCAAGTCTGGATAAGGAGAGAAAGGTTGTGGGTTGTAAATAAAATGTGTTCAAGCAGAGGAAATGTAAAGTGATGGTTCTATGCTGACCTAAGTCGAGGATCGTGTAGTTGTCGTTGTAAACATGCATTTTTGATTTCCTTGGAAAAATCATTATGATTGGTGGAGCTAAGGTTATTTGTATTGTACTTACAAAATGAAGAGGTTTATTTGGATTGCCAAGTACTGGATCCCAAGATTGCATCATTTGAAGTTTATAGTTATGAGATGTGGTCTGTAGATAATATAACAATTGCAACCATAGTAAAACAAACAGCAGTAATTGGTCTTGAGAGCATTTAAAGTTCCAGGGATATGGATTAGATGCTAACTGCATGATTTCAAGTGCATTTACCTAAGTACTATTGGTATGCCAGTGGGACCAAGGTCTGTGTATTTACCTCTGTGGAATTCCGAGAAGTTTCTTGTGGCTCTTCTTACTTTTTACTGTTGGGAATTCCAAGCACGGGTTTAATCTGGTTGTTGACATTGATTACTTATTGCTGTTCTAGGGGCTAGTTACTTCCATTGATATTTTAGATGAAGTAAAAATATTACTCCCTCCGTTTTAAAAGTATGACCTCTTTCTTTTTTTGGTAATAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTCGTACATTGACATAATTTTATTTTAGGACCACGTGATCAAAAGTCTTCTTTATTTTCTTAAACTTCGTGTCAAAGTCAAACTATGTCATTTTTTGTTAAACGAAGGGAGTATTAACAACAGGGAGAATCTAACACCGTACTCAAGGTGTAAATCTAGAAGTAGGAAGCTTGCATAATGCATGATTTTCTACAAAAGCCACCCAAGTATCTAAACAACTAGGTATATCTTGGGTGCACCAAAAAAACAAGGGATCCATGCAGGTTCATTGAGTTTCAGTTTCGTTAATGAATTATTGGTATCTATGCAGGTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAA-CCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCG-TCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTAT-GTTGGAAATCTTCACTTTAACATGA-CAGAATTGCAG-CTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTT-TTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAA-TTACCTACAGATCCTGAAACAGGACATTGCAA</genome_strand>
        <mrna_strand>TTGTATCAATATGTACTATAGTTTGTGACATAGGAAAGTGAAGGGTCTGCATGAGCTCTAGCTGGTTAATGAAGTCATGTTTAAAATAATTCCTTGCTATGATCTAGTGCCATACAGATTCTCATTATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAG................................................................................................................................ATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTCTTCTCACAAGCAGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCAGGTCGCTTGCTTTTTGGTCAAGCCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCAACCGCGATCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATCGTTGGAAATCTTCACTTTAACATGACCAGAATTGCAGGCTTAGACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTTACCTACAGATTCTGAAACAGGACATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E455554" ref_strand="+" ref_description="SGN-E455554 	[cSTS-26-J21]">
      <seq>gtctgcatgagctctagctggttaatgaagtcatgtttaaaataattccttgctatgatctatgccatacagattctcattatggtctgagtcatttatacaggagattcaaggagaagaaagaaaaaatagaaccagaagctgatccagaaagggaccagagaactgtttttgcttaccagatgcccttgaaggcgactgaaagggatgtgtatgagttcttctcacaagcaggaaaggtgagggatgtgcggttaatcatggaccggaattcaaggcgatctaaaggagttgggtacattgagttttatgatgctatgtccgtgccaatggctattgctttatctggtcgcttgctttttggccaaccagtaatggtaaaaccttctgaagctgaaaagaaccttgttcagtcaaccgcatctggtggtggatcagggttggcggggccaaatgctgcctcagaaagaaaactttatgttggaaatcttcactttaacatgacagaattgcagcttagacagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcaaaggatttggggtttgtccaatttgctcaacttgaacatgctaaggcggctcaaagtttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="76879" stop="80667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77175" g_stop="77355" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77356" i_stop="77483" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77484" g_stop="77540" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="239" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77541" i_stop="78009" i_length="469">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78010" g_stop="78065" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="295" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79477" g_stop="79705" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="524" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80147" g_stop="80233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="612" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80325" g_stop="80367" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="655" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E455554" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77175" e_stop="77355"/>
          <exon e_start="77484" e_stop="77540"/>
          <exon e_start="78010" e_stop="78065"/>
          <exon e_start="79477" e_stop="79705"/>
          <exon e_start="80147" e_stop="80233"/>
          <exon e_start="80325" e_stop="80367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGT-CATGAGCTCTAGCTGGTTAATAAATTCATGTTTAAAACAATTTTTTGCTATGATCTATGCCATACAGATTCTCATCATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGGTAAATAGTTTCAACATCTTCTTTTCTGCCTTTTTCATCTACATACAACATACATAGTCATTTCTAGCTAGGTGGTTTATCTGGTCAAAAGGTTCATTCTCTGATTTATTTGGTTCGAACTTTTGTAGATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTTTTCTCACAAGCAGGAAAGGTTAGTTCACTTGGTCCTCTATATTGCTTTATTGTAAATGAACTATGCTGCTGGCAAATTTATGGTTTGATGATCAATGTGTGCTGGTTATGCTTGTCCTAGAATTTCATTTTCTTGTGGTCCTCTAGAATTGATATGATACTTAATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCATAAACTATTAGTGCATGCAGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCAGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAATGATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATTGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGGTGATTTCTATATTTTGACACTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGGGTATGTCTGTGAAACTCAACTCTCTATCTTACAATTTTGCATTTAATTTTTCCTTGATTTCTTTCTCAAGTAAATTAATGTGCATCTTGCTTGTGAAGTACTCCTTAAAGTCCCAAGGATTTATGCAGTGCAGCTTTCTTTTTGGAGGGGGACGCTAATCATATTTGATTGACTGTAGCATTGGGGCATATCATTTTCCTAATTCAAACTGAATTTTTGTTTGTCTACTAATGATGGTTAATAAAATTGCTGTGTTGAAATCAAACTGTATTCTTGATTTGTTCCTCCGACTTCTGTGTCTCTTTTACACTATGCCTTTAGAAAAACTGTGTTTCTCATGGCTGTTTTTGCTTTTTTATAAATCTTCCTTTTGTTTGGTTGTTCTATGACGTCGGACGCCTAAAATATATTTCCAGTCCCAAGTCTGGATAAGGAGAGAAAGGTTGTGGGTTGTAAATAAAATGTGTTCAAGCAGAGGAAATGTAAAGTGATGGTTCTATGCTGACCTAAGTCGAGGATCGTGTAGTTGTCGTTGTAAACATGCATTTTTGATTTCCTTGGAAAAATCATTATGATTGGTGGAGCTAAGGTTATTTGTATTGTACTTACAAAATGAAGAGGTTTATTTGGATTGCCAAGTACTGGATCCCAAGATTGCATCATTTGAAGTTTATAGTTATGAGATGTGGTCTGTAGATAATATAACAATTGCAACCATAGTAAAACAAACAGCAGTAATTGGTCTTGAGAGCATTTAAAGTTCCAGGGATATGGATTAGATGCTAACTGCATGATTTCAAGTGCATTTACCTAAGTACTATTGGTATGCCAGTGGGACCAAGGTCTGTGTATTTACCTCTGTGGAATTCCGAGAAGTTTCTTGTGGCTCTTCTTACTTTTTACTGTTGGGAATTCCAAGCACGGGTTTAATCTGGTTGTTGACATTGATTACTTATTGCTGTTCTAGGGGCTAGTTACTTCCATTGATATTTTAGATGAAGTAAAAATATTACTCCCTCCGTTTTAAAAGTATGACCTCTTTCTTTTTTTGGTAATAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTCGTACATTGACATAATTTTATTTTAGGACCACGTGATCAAAAGTCTTCTTTATTTTCTTAAACTTCGTGTCAAAGTCAAACTATGTCATTTTTTGTTAAACGAAGGGAGTATTAACAACAGGGAGAATCTAACACCGTACTCAAGGTGTAAATCTAGAAGTAGGAAGCTTGCATAATGCATGATTTTCTACAAAAGCCACCCAAGTATCTAAACAACTAGGTATATCTTGGGTGCACCAAAAAAACAAGGGATCCATGCAGGTTCATTGAGTTTCAGTTTCGTTAATGAATTATTGGTATCTATGCAGGTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTT-GGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATG</genome_strand>
        <mrna_strand>GTCTGCATGAGCTCTAGCTGGTTAATGAAGTCATGTTTAAAATAATTCCTTGCTATGATCTATGCCATACAGATTCTCATTATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAG................................................................................................................................ATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTCTTCTCACAAGCAGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTTTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACCGCATCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGGTTTGTCCAA...........................................................................................TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E585063" ref_strand="+" ref_description="SGN-E585063 	[66781]">
      <seq>cctagaatttcattttcttgtggtcctctagnaattgatatgatacttcatgtttaggacccaaaaaatgatttgtgttcttcgcttgacccttcttccgtaaactattagtgcatgctgtatgcatctccttgctgttgcagtaactgcttctctgccttcggtatcaggtagcttaattacattctcatgtctcaagattctatacttgattggatgagcaatatagtctgatcaggtttaactgatgattttatgcatgacctattgcaggtcttgtggtgtatatagtatgagtgtaccaaaaggccctctaaatacagtttatcctgaagatttctatattttgacattcattttatacatttctaggtgagggatgtgcggttaatcatggaccggaattcaaggcgatctaaaggagttgggtacattgagttttatgatgctatgtccgtgccaatggctattgctttatcaggtcgcttgctttttggtcaaccagtaatggtaaaaccttctgaagctgaaaagaaccttgttcaatcaaccgcatctggtggtggatcagggttggcggggccaaatgctgcctcagaaagaaaactttatgttggaaatcttcactttaacatgacagaattgcagcttagacagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcacaggatttggggttcgtccaatttgctcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="77338" stop="80535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77638" g_stop="78065" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79477" g_stop="79705" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="657" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80147" g_stop="80233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="745" r_length="88" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80325" g_stop="80334" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="755" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E585063" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77638" e_stop="78065"/>
          <exon e_start="79477" e_stop="79705"/>
          <exon e_start="80147" e_stop="80233"/>
          <exon e_start="80325" e_stop="80334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAATTTCATTTTCTTGTGGTCCTCTAG-AATTGATATGATACTTAATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCATAAACTATTAGTGCATGCAGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCAGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAATGATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATTGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGGTGATTTCTATATTTTGACACTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGGGTATGTCTGTGAAACTCAACTCTCTATCTTACAATTTTGCATTTAATTTTTCCTTGATTTCTTTCTCAAGTAAATTAATGTGCATCTTGCTTGTGAAGTACTCCTTAAAGTCCCAAGGATTTATGCAGTGCAGCTTTCTTTTTGGAGGGGGACGCTAATCATATTTGATTGACTGTAGCATTGGGGCATATCATTTTCCTAATTCAAACTGAATTTTTGTTTGTCTACTAATGATGGTTAATAAAATTGCTGTGTTGAAATCAAACTGTATTCTTGATTTGTTCCTCCGACTTCTGTGTCTCTTTTACACTATGCCTTTAGAAAAACTGTGTTTCTCATGGCTGTTTTTGCTTTTTTATAAATCTTCCTTTTGTTTGGTTGTTCTATGACGTCGGACGCCTAAAATATATTTCCAGTCCCAAGTCTGGATAAGGAGAGAAAGGTTGTGGGTTGTAAATAAAATGTGTTCAAGCAGAGGAAATGTAAAGTGATGGTTCTATGCTGACCTAAGTCGAGGATCGTGTAGTTGTCGTTGTAAACATGCATTTTTGATTTCCTTGGAAAAATCATTATGATTGGTGGAGCTAAGGTTATTTGTATTGTACTTACAAAATGAAGAGGTTTATTTGGATTGCCAAGTACTGGATCCCAAGATTGCATCATTTGAAGTTTATAGTTATGAGATGTGGTCTGTAGATAATATAACAATTGCAACCATAGTAAAACAAACAGCAGTAATTGGTCTTGAGAGCATTTAAAGTTCCAGGGATATGGATTAGATGCTAACTGCATGATTTCAAGTGCATTTACCTAAGTACTATTGGTATGCCAGTGGGACCAAGGTCTGTGTATTTACCTCTGTGGAATTCCGAGAAGTTTCTTGTGGCTCTTCTTACTTTTTACTGTTGGGAATTCCAAGCACGGGTTTAATCTGGTTGTTGACATTGATTACTTATTGCTGTTCTAGGGGCTAGTTACTTCCATTGATATTTTAGATGAAGTAAAAATATTACTCCCTCCGTTTTAAAAGTATGACCTCTTTCTTTTTTTGGTAATAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTCGTACATTGACATAATTTTATTTTAGGACCACGTGATCAAAAGTCTTCTTTATTTTCTTAAACTTCGTGTCAAAGTCAAACTATGTCATTTTTTGTTAAACGAAGGGAGTATTAACAACAGGGAGAATCTAACACCGTACTCAAGGTGTAAATCTAGAAGTAGGAAGCTTGCATAATGCATGATTTTCTACAAAAGCCACCCAAGTATCTAAACAACTAGGTATATCTTGGGTGCACCAAAAAAACAAGGGATCCATGCAGGTTCATTGAGTTTCAGTTTCGTTAATGAATTATTGGTATCTATGCAGGTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTT-GGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAAC</genome_strand>
        <mrna_strand>CCTAGAATTTCATTTTCTTGTGGTCCTCTAGNAATTGATATGATACTTCATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCGTAAACTATTAGTGCATGCTGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCGGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAAT-ATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATAGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGAAGATTTCTATATTTTGACATTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCAGGTCGCTTGCTTTTTGGTCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCAACCGCATCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCACAGGATTTGGGGTTCGTCCAA...........................................................................................TTTGCTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E474379" ref_strand="+" ref_description="SGN-E474379 	[cSTB-36-G16]">
      <seq>gtgcggttaatcatggaccggaattcaaggcgatctaaaggagttgggtacattgagttttatgatgctatgtccgtgccaatggctattgctttatctggtcgcttgctttttggccaaccagtaatggtaaaaccttctgaagctgaaaagaaccttgttcagtcaaccgcatctggtggtggatcagggttggcggggccaaatgctgcctcagaaagaaaactttatgttggaaatcttcactttaacatgacagaattgcagcttagacagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcaaaggatttgggtttgtccaatttgctcaacttgaacatgctaaggcggctcaaagtttgaatggtaagcttgagattgcgggtcggaccatcaaggtttcatccgttactgaacatgttggagtacaagatgctggagctaaaactgcagactttgatgatgatgaagggggtggcctggcattgaatgcttagtcaagggccatgcttatggcaaaattggaccgcagtggtgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="77719" stop="82972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78019" g_stop="78065" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79477" g_stop="79705" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="276" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80147" g_stop="80233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80325" g_stop="80399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80516" g_stop="80599" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="522" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82612" g_stop="82672" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="583" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E474379" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78019" e_stop="78065"/>
          <exon e_start="79477" e_stop="79705"/>
          <exon e_start="80147" e_stop="80233"/>
          <exon e_start="80325" e_stop="80399"/>
          <exon e_start="80516" e_stop="80599"/>
          <exon e_start="82612" e_stop="82672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGGGTATGTCTGTGAAACTCAACTCTCTATCTTACAATTTTGCATTTAATTTTTCCTTGATTTCTTTCTCAAGTAAATTAATGTGCATCTTGCTTGTGAAGTACTCCTTAAAGTCCCAAGGATTTATGCAGTGCAGCTTTCTTTTTGGAGGGGGACGCTAATCATATTTGATTGACTGTAGCATTGGGGCATATCATTTTCCTAATTCAAACTGAATTTTTGTTTGTCTACTAATGATGGTTAATAAAATTGCTGTGTTGAAATCAAACTGTATTCTTGATTTGTTCCTCCGACTTCTGTGTCTCTTTTACACTATGCCTTTAGAAAAACTGTGTTTCTCATGGCTGTTTTTGCTTTTTTATAAATCTTCCTTTTGTTTGGTTGTTCTATGACGTCGGACGCCTAAAATATATTTCCAGTCCCAAGTCTGGATAAGGAGAGAAAGGTTGTGGGTTGTAAATAAAATGTGTTCAAGCAGAGGAAATGTAAAGTGATGGTTCTATGCTGACCTAAGTCGAGGATCGTGTAGTTGTCGTTGTAAACATGCATTTTTGATTTCCTTGGAAAAATCATTATGATTGGTGGAGCTAAGGTTATTTGTATTGTACTTACAAAATGAAGAGGTTTATTTGGATTGCCAAGTACTGGATCCCAAGATTGCATCATTTGAAGTTTATAGTTATGAGATGTGGTCTGTAGATAATATAACAATTGCAACCATAGTAAAACAAACAGCAGTAATTGGTCTTGAGAGCATTTAAAGTTCCAGGGATATGGATTAGATGCTAACTGCATGATTTCAAGTGCATTTACCTAAGTACTATTGGTATGCCAGTGGGACCAAGGTCTGTGTATTTACCTCTGTGGAATTCCGAGAAGTTTCTTGTGGCTCTTCTTACTTTTTACTGTTGGGAATTCCAAGCACGGGTTTAATCTGGTTGTTGACATTGATTACTTATTGCTGTTCTAGGGGCTAGTTACTTCCATTGATATTTTAGATGAAGTAAAAATATTACTCCCTCCGTTTTAAAAGTATGACCTCTTTCTTTTTTTGGTAATAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTCGTACATTGACATAATTTTATTTTAGGACCACGTGATCAAAAGTCTTCTTTATTTTCTTAAACTTCGTGTCAAAGTCAAACTATGTCATTTTTTGTTAAACGAAGGGAGTATTAACAACAGGGAGAATCTAACACCGTACTCAAGGTGTAAATCTAGAAGTAGGAAGCTTGCATAATGCATGATTTTCTACAAAAGCCACCCAAGTATCTAAACAACTAGGTATATCTTGGGTGCACCAAAAAAACAAGGGATCCATGCAGGTTCATTGAGTTTCAGTTTCGTTAATGAATTATTGGTATCTATGCAGGTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAGGTATGTAGATAGACGAAACTCGTTGCTGATGTATGGTCTCTGTAGACCTCACCTCTCTGAATACTGTTGTATGACAATATCTACTGATCCTTGACTGGCTTTTTGGTTCAATGCAGGTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTGGTGAGTTTGCTCTTAAATCATTAGAGAAGGACCTTACAAGTCATTTTTTCCTTTTATTTAGGTTTAATACTTCGTAAATTATCAGTATGATGGAGGTGGTAAAAGGTCCATCCATGTTTTGCCAGTGTTATGCATTAATTTTTATTGTTCATCTCTCTGTTACTTTCTTCCTAATTCCCCTTTTCTTTTATGGTGTTTGTTCGGTATTCAAGAAAAAAATGAACCAAACCAACTAAATAATTCATTAATATATAAAGTTTATGATCATAAAAAAATATTTTTATTCAAGACACTTTAAATATCTTTAACCACAAAAAATTGTTTTAGATTTTTTTTTTTTAAAACGTCGTCTTGTGTACTCCAATCTTCTGTATTGAAGTTATTTCAAAGTGATTTATTGTTTTAGCATCGAGGCTAGATAAGTTTGTAAGTTGTCACGTCTCATAGTGAAATTTTGTCTCAGATATATGCTTTCAATAGATAATAGGTTTAATCAAGTTAACTGATTCTCGCTAAACATAGACATATGAGAAATTGTGTCTTAGCTCTAGTAGATATTGAAATGAATTTGTATTTTCATGTGGGAAAAACCAACAAAACCGAAACAAGATAGTGATTCTTTGTTTTGGTTCACAGATGAAAACAGAGAAACAAAACCATGAACGCTAAGCATAAAACCGAAAAAGAGCGTAACACGGAGCCATTATCAAGGCTTAGGAAGTTTCTGCTTTGACTTCATCCATCTGGTTATGTTGTTTTCAACGAGTGATATCTCTTCCTCCGAGGGAAATTCTAATTTTGTGTTGAAGCCACTCAGGCAGAATTCTACCTGATTTTTAGTTCTTGTTTTTACATGTTCTAGAAAATTTACAGCACTTCTTTTTTCCTATTTTGGGATGTTAATAAATGTGAGACTTTAGCACTGCCCCATAAATAATACTATTTTATACAATATCCACATTTTCTCGAGAGTTCAATCCCTAACTATGGGGTTGAGCTAAGCCCAGGTGCATATCTTTACATGGTATTATAGCTAGGCCCATCCCTATTTGGGCTACCGGTCCATGCTCCTGTTGGGCCTAAGCGTGAAGGGTTAGAGTCCTCCATCCTATGTGGAATGGATGGGTGGTTTAATAATCTTGGACGGTTGGACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAACACAAGCTATCTTTTAGATATGAGACATGACTTGGGCGCAAGTGTCATATCTTTGCATAAACATCGATGTTGATGTTTGCAATATCAAGCTAACTTTTCAATCATTATTTTAATATTCCTTTCATTAACTTTAATTTATGTAATTGCTGAAGTTCAACTAATAGTTTATACTCTGTCTAGTTTAATAATCGCATGAAAGTGCAACAGGCGAGTGCTATGTAATTTCATCAACTTTACCATGATATATTTTCTGCAACAAAACTTTGTTGAACTTGTGCAAAAACTTAATGAGTTTACTATAGGGGATCTTGCTTTGTTCTTTCTAATACGCCATGTCAAAGAATAGTTATTTAAGTGCACGCACATCAAATGCCCTTTTTCAGCTAGTTGGTGCACAATTCTCACTTTGACTAAACCAGACCCCACTTGTGTGATTTCAATGAGTATATCGTTGGTGTTATACTTGGCAAGCCATCCTCAAAGCAGCTCAATAGCAGTGGATCTGAGTTCATTCATTCTAGGAAGTATGAAGTATAGGGGATGGAACTTGGTATTTTTTTAATAAAGACTAATCCATTCGTAATATGATGTTTACTGGGAAGACAGAAGTCTTCCTTTTCCTGTAAGTTAACGAAAACGTATGTTTGATCTTTTTTTTCTCTTGGTACCTCTGCATGTGGATGCCTGTTACATTAGAAATCTGATGAATTCATTCTCTATGATATTAACCTTGTGCAAAGATGGGGAAAAACTGCCAAATAGGCTTTTAGTAATTGCTATCTCTGTTATAAAGTGCACATCCATCTGAATCGTTTTTGTGTATTCCAGGCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTT</genome_strand>
        <mrna_strand>GTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTTTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACCGCATCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA...........................................................................................TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG....................................................................................................................GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAATGCTTAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E427440" ref_strand="+" ref_description="SGN-E427440 	[STM-48-B5]">
      <seq>caccgcatctggtggtggatagggttggcggggccaaatctaacaacagaaagaaaactttatgttggaaatcttcactttatcacatcagaattgcagcttagacagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcaaaggatttgggtttgtccaatttgctcaacttgaacatgctaaggcggctcaaagtttgaatggtaagcttgagattgcgggtcggaccatcaaggtttcatccgttactgaacatgttggagtacaagatgctggagctaaaactgcagactttgatgatgatgaaaggggtggcctggcattgaatgctcagtcaagggccatgcttatggcaaaattggaccgcagtggtgttgcttcaggtgttgcgggtacactangagttcctgcacttaatggagcagctcagacagcaatgagcatgccaatgggtggggcaacagcttttccaaatatgctcccaacacaactcattgcttccatggctcccgaacccattggaattcccagcgagtgtttgttattaaaaaacatgtttcgatcctgcaactgagacggagccagaatttgatttggatattaaagatgatgtgaaggaggaatgttcgaagtatggcagggtcaagcatatccacgtggacaagaacacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcagatcgatttcagccatctacttgcaaccatatgaatatgatgccaagttcaaaggtacaggctaaatggtttcagaagggggccatctaaaatgtctgaagactgctgatttgtttattgtaattgcagaactgcagctagctgattttgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="79298" stop="84472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79597" g_stop="79705" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80147" g_stop="80233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="195" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80325" g_stop="80399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="270" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80516" g_stop="80599" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="354" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82612" g_stop="82676" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120">
            <donor d_prob="0.360" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82797" g_stop="82986" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="610" r_length="191" r_score="0.947"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83107" g_stop="83195" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="699" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="814" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84054" g_stop="84099" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="860" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E427440" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79597" e_stop="79705"/>
          <exon e_start="80147" e_stop="80233"/>
          <exon e_start="80325" e_stop="80399"/>
          <exon e_start="80516" e_stop="80599"/>
          <exon e_start="82612" e_stop="82676"/>
          <exon e_start="82797" e_stop="82986"/>
          <exon e_start="83107" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAGGTATGTAGATAGACGAAACTCGTTGCTGATGTATGGTCTCTGTAGACCTCACCTCTCTGAATACTGTTGTATGACAATATCTACTGATCCTTGACTGGCTTTTTGGTTCAATGCAGGTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTGGTGAGTTTGCTCTTAAATCATTAGAGAAGGACCTTACAAGTCATTTTTTCCTTTTATTTAGGTTTAATACTTCGTAAATTATCAGTATGATGGAGGTGGTAAAAGGTCCATCCATGTTTTGCCAGTGTTATGCATTAATTTTTATTGTTCATCTCTCTGTTACTTTCTTCCTAATTCCCCTTTTCTTTTATGGTGTTTGTTCGGTATTCAAGAAAAAAATGAACCAAACCAACTAAATAATTCATTAATATATAAAGTTTATGATCATAAAAAAATATTTTTATTCAAGACACTTTAAATATCTTTAACCACAAAAAATTGTTTTAGATTTTTTTTTTTTAAAACGTCGTCTTGTGTACTCCAATCTTCTGTATTGAAGTTATTTCAAAGTGATTTATTGTTTTAGCATCGAGGCTAGATAAGTTTGTAAGTTGTCACGTCTCATAGTGAAATTTTGTCTCAGATATATGCTTTCAATAGATAATAGGTTTAATCAAGTTAACTGATTCTCGCTAAACATAGACATATGAGAAATTGTGTCTTAGCTCTAGTAGATATTGAAATGAATTTGTATTTTCATGTGGGAAAAACCAACAAAACCGAAACAAGATAGTGATTCTTTGTTTTGGTTCACAGATGAAAACAGAGAAACAAAACCATGAACGCTAAGCATAAAACCGAAAAAGAGCGTAACACGGAGCCATTATCAAGGCTTAGGAAGTTTCTGCTTTGACTTCATCCATCTGGTTATGTTGTTTTCAACGAGTGATATCTCTTCCTCCGAGGGAAATTCTAATTTTGTGTTGAAGCCACTCAGGCAGAATTCTACCTGATTTTTAGTTCTTGTTTTTACATGTTCTAGAAAATTTACAGCACTTCTTTTTTCCTATTTTGGGATGTTAATAAATGTGAGACTTTAGCACTGCCCCATAAATAATACTATTTTATACAATATCCACATTTTCTCGAGAGTTCAATCCCTAACTATGGGGTTGAGCTAAGCCCAGGTGCATATCTTTACATGGTATTATAGCTAGGCCCATCCCTATTTGGGCTACCGGTCCATGCTCCTGTTGGGCCTAAGCGTGAAGGGTTAGAGTCCTCCATCCTATGTGGAATGGATGGGTGGTTTAATAATCTTGGACGGTTGGACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAACACAAGCTATCTTTTAGATATGAGACATGACTTGGGCGCAAGTGTCATATCTTTGCATAAACATCGATGTTGATGTTTGCAATATCAAGCTAACTTTTCAATCATTATTTTAATATTCCTTTCATTAACTTTAATTTATGTAATTGCTGAAGTTCAACTAATAGTTTATACTCTGTCTAGTTTAATAATCGCATGAAAGTGCAACAGGCGAGTGCTATGTAATTTCATCAACTTTACCATGATATATTTTCTGCAACAAAACTTTGTTGAACTTGTGCAAAAACTTAATGAGTTTACTATAGGGGATCTTGCTTTGTTCTTTCTAATACGCCATGTCAAAGAATAGTTATTTAAGTGCACGCACATCAAATGCCCTTTTTCAGCTAGTTGGTGCACAATTCTCACTTTGACTAAACCAGACCCCACTTGTGTGATTTCAATGAGTATATCGTTGGTGTTATACTTGGCAAGCCATCCTCAAAGCAGCTCAATAGCAGTGGATCTGAGTTCATTCATTCTAGGAAGTATGAAGTATAGGGGATGGAACTTGGTATTTTTTTAATAAAGACTAATCCATTCGTAATATGATGTTTACTGGGAAGACAGAAGTCTTCCTTTTCCTGTAAGTTAACGAAAACGTATGTTTGATCTTTTTTTTCTCTTGGTACCTCTGCATGTGGATGCCTGTTACATTAGAAATCTGATGAATTCATTCTCTATGATATTAACCTTGTGCAAAGATGGGGAAAAACTGCCAAATAGGCTTTTAGTAATTGCTATCTCTGTTATAAAGTGCACATCCATCTGAATCGTTTTTGTGTATTCCAGGCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGGGTATGTCCAGCTTTCTCCCTCTTTTATGCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGAAAAAAGAAAAGGAGTGTTTTTACATGCAAAATCTAATGCTCAAATTTTTCCTCTGCAGTGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTT-GATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGG</genome_strand>
        <mrna_strand>CACCGCATCTGGTGGTGGAT-AGGGTTGGCGGGGCCAAATCTAACAACAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTATCACATCAGAATTGCAGCTTAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA...........................................................................................TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG....................................................................................................................GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAAGGGGTGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG........................................................................................................................TGTTGCGGGTACACTANGAGTTCCTGCACTTAATGGAGCAGCTCAGACAGCAATGAGCATGCCAATGGGTGGGGCAACAGCTTTTCCAAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGAATTCCCAGCGAGTGTTTGTTATTAAAAAACATGTTTCGATCCTGCAACTGAG........................................................................................................................ACGGAGCCAGAATTTGATTTGGATATTAAAGATGATGTGAAGGAGGAATGTTCGAAGTATGGCAGGGTCAAGCATATCCACGTGGACAA........................................................................................................................................................................................GAACACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGATCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCATATGAATATGATGCCAAGTTCAAAGGTACAGGCTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E459815" ref_strand="+" ref_description="SGN-E459815 	[cPRO-29-C21]">
      <seq>cagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcaaaggatttgggtttgtccaatttgctcaacttgaacatgctaaggcggctcaaagtttgaatggtaagcttgagattgcgggtcggaccatcaaggtttcatccgttactgaacatgttggagtacaagatgctggagctaaaactgcagactttgatgatgatgaagggggtggcctggcattgaatgctcagtcaagggccatgcttatggcaaaattggaccgcagtggtgttgcttcaggtgttgcgggtacactaggagttcctgcacttaatggagcagctcagacagcaatgagcatgccaatgggtggggcaacagcttttccaaatatgctcccaacacaactcattgcttccatggctcccgaacccattggaattcccagcgagtgtttgttattaaaaaacatgttcgatcctgcaactgagacggagccagaatttgatttggatattaaagatgatgtgaaggaggaatgttcgaagtatggcaggntcaagcatatccacgtggacaagaacacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcacnagccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="79844" stop="83750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80144" g_stop="80233" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80325" g_stop="80399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="165" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80516" g_stop="80599" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="249" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82612" g_stop="82676" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="314" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120">
            <donor d_prob="0.360" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82797" g_stop="82986" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="504" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83107" g_stop="83195" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="593" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83380" g_stop="83450" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="663" r_length="70" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E459815" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80144" e_stop="80233"/>
          <exon e_start="80325" e_stop="80399"/>
          <exon e_start="80516" e_stop="80599"/>
          <exon e_start="82612" e_stop="82676"/>
          <exon e_start="82797" e_stop="82986"/>
          <exon e_start="83107" e_stop="83195"/>
          <exon e_start="83380" e_stop="83450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAGGTATGTAGATAGACGAAACTCGTTGCTGATGTATGGTCTCTGTAGACCTCACCTCTCTGAATACTGTTGTATGACAATATCTACTGATCCTTGACTGGCTTTTTGGTTCAATGCAGGTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTGGTGAGTTTGCTCTTAAATCATTAGAGAAGGACCTTACAAGTCATTTTTTCCTTTTATTTAGGTTTAATACTTCGTAAATTATCAGTATGATGGAGGTGGTAAAAGGTCCATCCATGTTTTGCCAGTGTTATGCATTAATTTTTATTGTTCATCTCTCTGTTACTTTCTTCCTAATTCCCCTTTTCTTTTATGGTGTTTGTTCGGTATTCAAGAAAAAAATGAACCAAACCAACTAAATAATTCATTAATATATAAAGTTTATGATCATAAAAAAATATTTTTATTCAAGACACTTTAAATATCTTTAACCACAAAAAATTGTTTTAGATTTTTTTTTTTTAAAACGTCGTCTTGTGTACTCCAATCTTCTGTATTGAAGTTATTTCAAAGTGATTTATTGTTTTAGCATCGAGGCTAGATAAGTTTGTAAGTTGTCACGTCTCATAGTGAAATTTTGTCTCAGATATATGCTTTCAATAGATAATAGGTTTAATCAAGTTAACTGATTCTCGCTAAACATAGACATATGAGAAATTGTGTCTTAGCTCTAGTAGATATTGAAATGAATTTGTATTTTCATGTGGGAAAAACCAACAAAACCGAAACAAGATAGTGATTCTTTGTTTTGGTTCACAGATGAAAACAGAGAAACAAAACCATGAACGCTAAGCATAAAACCGAAAAAGAGCGTAACACGGAGCCATTATCAAGGCTTAGGAAGTTTCTGCTTTGACTTCATCCATCTGGTTATGTTGTTTTCAACGAGTGATATCTCTTCCTCCGAGGGAAATTCTAATTTTGTGTTGAAGCCACTCAGGCAGAATTCTACCTGATTTTTAGTTCTTGTTTTTACATGTTCTAGAAAATTTACAGCACTTCTTTTTTCCTATTTTGGGATGTTAATAAATGTGAGACTTTAGCACTGCCCCATAAATAATACTATTTTATACAATATCCACATTTTCTCGAGAGTTCAATCCCTAACTATGGGGTTGAGCTAAGCCCAGGTGCATATCTTTACATGGTATTATAGCTAGGCCCATCCCTATTTGGGCTACCGGTCCATGCTCCTGTTGGGCCTAAGCGTGAAGGGTTAGAGTCCTCCATCCTATGTGGAATGGATGGGTGGTTTAATAATCTTGGACGGTTGGACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAACACAAGCTATCTTTTAGATATGAGACATGACTTGGGCGCAAGTGTCATATCTTTGCATAAACATCGATGTTGATGTTTGCAATATCAAGCTAACTTTTCAATCATTATTTTAATATTCCTTTCATTAACTTTAATTTATGTAATTGCTGAAGTTCAACTAATAGTTTATACTCTGTCTAGTTTAATAATCGCATGAAAGTGCAACAGGCGAGTGCTATGTAATTTCATCAACTTTACCATGATATATTTTCTGCAACAAAACTTTGTTGAACTTGTGCAAAAACTTAATGAGTTTACTATAGGGGATCTTGCTTTGTTCTTTCTAATACGCCATGTCAAAGAATAGTTATTTAAGTGCACGCACATCAAATGCCCTTTTTCAGCTAGTTGGTGCACAATTCTCACTTTGACTAAACCAGACCCCACTTGTGTGATTTCAATGAGTATATCGTTGGTGTTATACTTGGCAAGCCATCCTCAAAGCAGCTCAATAGCAGTGGATCTGAGTTCATTCATTCTAGGAAGTATGAAGTATAGGGGATGGAACTTGGTATTTTTTTAATAAAGACTAATCCATTCGTAATATGATGTTTACTGGGAAGACAGAAGTCTTCCTTTTCCTGTAAGTTAACGAAAACGTATGTTTGATCTTTTTTTTCTCTTGGTACCTCTGCATGTGGATGCCTGTTACATTAGAAATCTGATGAATTCATTCTCTATGATATTAACCTTGTGCAAAGATGGGGAAAAACTGCCAAATAGGCTTTTAGTAATTGCTATCTCTGTTATAAAGTGCACATCCATCTGAATCGTTTTTGTGTATTCCAGGCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGGGTATGTCCAGCTTTCTCCCTCTTTTATGCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGAAAAAAGAAAAGGAGTGTTTTTACATGCAAAATCTAATGCTCAAATTTTTCCTCTGCAGTGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGC</genome_strand>
        <mrna_strand>CAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA...........................................................................................TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG....................................................................................................................GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG........................................................................................................................TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGAGCAGCTCAGACAGCAATGAGCATGCCAATGGGTGGGGCAACAGCTTTTCCAAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGAATTCCCAGCGAGTGTTTGTTATTAAAAAACATGTTCGATCCTGCAACTGAG........................................................................................................................ACGGAGCCAGAATTTGATTTGGATATTAAAGATGATGTGAAGGAGGAATGTTCGAAGTATGGCAGGNTCAAGCATATCCACGTGGACAA........................................................................................................................................................................................GAACACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTC-ACNAGCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E279822" ref_strand="-" ref_description="SGN-E279822 	[cLER-8-B21]">
      <seq>atgctcccaacacaactcattgcttccatggctcccgaacccattgggatacccagcgagtgtttgttattaaaaaacatgtttgatcctgcaactgagacggatccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82588" stop="84557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82888" g_stop="82986" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83107" g_stop="83195" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="188" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="303" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84054" g_stop="84257" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="507" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E279822" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279822" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82888" e_stop="82986"/>
          <exon e_start="83107" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTC</genome_strand>
        <mrna_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG........................................................................................................................ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E349755" ref_strand="-" ref_description="SGN-E349755 	[cTOS-3-G10]">
      <seq>atccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82811" stop="84646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83111" g_stop="83195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="200" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84054" g_stop="84347" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="494" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="512"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E349755" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349755" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83111" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>ATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E357036" ref_strand="-" ref_description="SGN-E357036 	[cTOS-22-E8]">
      <seq>tccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82812" stop="84646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83112" g_stop="83195" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="199" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84054" g_stop="84347" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="493" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="511"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E357036" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357036" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83112" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>TCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E302821" ref_strand="+" ref_description="SGN-E302821 	[cLEY-2-O5]">
      <seq>aatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82853" stop="84646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83153" g_stop="83195" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="158" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84054" g_stop="84347" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="452" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E302821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83153" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>AATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E217779" ref_strand="-" ref_description="SGN-E217779 	[cLEL-23-F13]">
      <seq>tgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaaaagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="82855" stop="84626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83155" g_stop="83195" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="156" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84054" g_stop="84326" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="429" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="456"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E217779" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217779" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83155" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>TGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAAAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E218142" ref_strand="-" ref_description="SGN-E218142 	[cLEL-23-F14]">
      <seq>atggtttgctggcaggtcgatttcagccatgtacttgcacccgtatgaatatgatgcccagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagagtgctgatttgtttattgtaattgcaatagggcagctgattttgtaatttaagttgggagaccaaagacccgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcccccatggaagtcatttgtattttcttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="83158" stop="84626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83458" g_stop="83494" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84054" g_stop="84326" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="310" r_length="273" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="337"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E218142" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83458" e_stop="83494"/>
          <exon e_start="84054" e_stop="84326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>ATGGTTTGCTGGCAGGTCGATTTCAGCCATGTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGTATGAATATGATGCCCAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGAGTGCTGATTTGTTTATTGTAATTGCAATAGGGCAGCTGATTTTGTAATTTAAGTTGGGAGACCAAAGACCCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCCCCCATGGAAGTCATTTGTATTTTCTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E218279" ref_strand="-" ref_description="SGN-E218279 	[cLEL-23-F13]">
      <seq>tggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="83159" stop="84626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83459" g_stop="83494" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84054" g_stop="84326" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="309" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="336"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E218279" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218279" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83459" e_stop="83494"/>
          <exon e_start="84054" e_stop="84326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>TGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E311077" ref_strand="+" ref_description="SGN-E311077 	[cLEZ-17-L4]">
      <seq>tttgtactcttgccaaatttgggagtataaagtggaaacccggtttagggagtctggttttagggtcgggtgattacgatggagtggttatggagtgtgacctagagaaaaaaatgcccgttttcgagcgtgatgagcatggtggtagacgggtttggagcattgactattgtcagtcggatccggttttgggtgcatccggatccgatgacggaaccatgcaaatgtgggacccgcggtgcggtgacagtggcaagtgtttagctatggtacaacctaccaaagggtatagtacacccgtgtgttgcgtcgaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttctttgagcatagatggttgtttaaaaatgtggaatgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="90450" stop="91560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90750" g_stop="91260" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E311077" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90750" e_stop="91260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</genome_strand>
        <mrna_strand>TTTGTACTCTTGCCAAATTTGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCTGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTGTGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTTGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E246302" ref_strand="+" ref_description="SGN-E246302 	[cLEF-40-J11]">
      <seq>gaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttcttcgagcatagatggttgtttaaaaatgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtaggaggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaataatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaaccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaatgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaatgactatatatatattcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="90761" stop="91869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91061" g_stop="91569" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E246302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91061" e_stop="91569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTC</genome_strand>
        <mrna_strand>GAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGAC--TATATATATATTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E252340" ref_strand="+" ref_description="SGN-E252340 	[cLEG-12-P18]">
      <seq>acttacattagatttgttgatgaacgtactattatttcttcgagcatagatggtgtgtttaaaaatgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtaggaggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaataatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaaccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaatgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaatgactatatatatatattcactcaaaatccagtaaaagacgaagtatcggcaaaatgtgtaatattatttcatgagaagtcaatcgtggccaatacaacaaggtaacacattttcttttttctttttcaattattcttctaattaatacaggagttagaggaattgttcaccatttacatttgtctgaaatagatagatagaggatatgattcgatagaaaaatatctgaagaaatttaaattgcaaatgctatatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="90884" stop="92107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91184" g_stop="91807" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E252340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91184" e_stop="91807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGT-TGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</genome_strand>
        <mrna_strand>ACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTGTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E332221" ref_strand="+" ref_description="SGN-E332221 	[cTOD-17-I11]">
      <seq>agaactagtctcgagttttttttttttttttttgatttgtctcctccggcatttgccgtttcgatcatagtaatcatcagtggtgttgattacttgattggattggagttaatctggactaattaaaaaccccatgtggaaaaaaagggaaaaaatttaaatggtgatacatatgtgtgtttgttttggaaatggaggtttaaactttaaagattgaatctttaggggtggggtggtggagggggtacatgngggtttgatctgtgatgatcattcttgattaggatggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaaagaatcagttctatagagcccatcatgactatttctctgatagttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="106166" stop="97554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105938" g_stop="105926" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="105870" i_length="56">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105869" g_stop="105594" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="288" r_length="275" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105593" i_stop="104278" i_length="1316">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104277" g_stop="104230" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="336" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102643" g_stop="102578" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="402" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102145" g_stop="102093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="455" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101201" g_stop="101136" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="521" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101135" i_stop="98420" i_length="2716">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98419" g_stop="98345" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="596" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98073" g_stop="98003" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="667" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97909" g_stop="97858" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="719" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97756" g_stop="97751" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="725" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E332221" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105938" e_stop="105926"/>
          <exon e_start="105869" e_stop="105594"/>
          <exon e_start="104277" e_stop="104230"/>
          <exon e_start="102643" e_stop="102578"/>
          <exon e_start="102145" e_stop="102093"/>
          <exon e_start="101201" e_stop="101136"/>
          <exon e_start="98419" e_stop="98345"/>
          <exon e_start="98073" e_stop="98003"/>
          <exon e_start="97909" e_stop="97858"/>
          <exon e_start="97756" e_stop="97751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATG-GGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTATTATGACATTTGGTTTTTCAGTTTACCGTTGTGAGATGGCTGGCTAATATATGTCAGTATCAAGGCTAACATCTGCAGAAGCACAGGTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGTGTAAGTTCTTTCTCAATAGTTTGTCACTTCTATTATTGGCTTATTGCTCTGTTTGTCTATTTCTCTTCTCAAAATGAGAGAAATACTTGCTTATTTTGCAGTTTAAT</genome_strand>
        <mrna_strand>AGAACTAGTCTCG........................................................AGTTTTTTTTTTT-TTTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGNGGGTTTGATCT-GTGATGATCATTCTTGATTAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG.............................................................................................GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT.....................................................................................................TTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E253029" ref_strand="+" ref_description="SGN-E253029 	[cLEG-25-P14]">
      <seq>ttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="106321" stop="97696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106021" g_stop="105926" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104277" g_stop="104230" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="144" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102643" g_stop="102578" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="210" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102145" g_stop="102093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101201" g_stop="101136" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="329" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101135" i_stop="100130" i_length="1006">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100129" g_stop="100055" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="404" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100054" i_stop="98420" i_length="1635">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98419" g_stop="98345" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="479" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98073" g_stop="97995" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="558" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E253029" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106021" e_stop="105926"/>
          <exon e_start="104277" e_stop="104230"/>
          <exon e_start="102643" e_stop="102578"/>
          <exon e_start="102145" e_stop="102093"/>
          <exon e_start="101201" e_stop="101136"/>
          <exon e_start="100129" e_stop="100055"/>
          <exon e_start="98419" e_stop="98345"/>
          <exon e_start="98073" e_stop="97995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTAT</genome_strand>
        <mrna_strand>TTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E277102" ref_strand="+" ref_description="SGN-E277102 	[cLEN-22-L22]">
      <seq>agagccaaatctatggactacaaaagttgacgtacaaacatcaatgcacaatgtacaatatatctgtattgaaaaattgcaaaacgtctctcttggttctaccatttcttcactttacaaatactcccaaaacagtccaatcgacaattttctaaaatcaaaattgaaaaccaaaacaactaatttctctatttttcagttcagatttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="106527" stop="99752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106227" g_stop="105926" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104277" g_stop="104230" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="350" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102643" g_stop="102578" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="416" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102145" g_stop="102093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="469" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101201" g_stop="101136" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="535" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101135" i_stop="100130" i_length="1006">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100129" g_stop="100055" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="610" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E277102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106227" e_stop="105926"/>
          <exon e_start="104277" e_stop="104230"/>
          <exon e_start="102643" e_stop="102578"/>
          <exon e_start="102145" e_stop="102093"/>
          <exon e_start="101201" e_stop="101136"/>
          <exon e_start="100129" e_stop="100055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG</genome_strand>
        <mrna_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E393849" ref_strand="+" ref_description="SGN-E393849 	[TUS-41-D23]">
      <seq>tatatccaaatctatggactacaaaagttgacgtacaaacatcaatgcacaatgtacaatatatctgtattgaaaaattgcaaaacgtctctcttggttctaccatttcttcactttacaaatactcccaaaacagtccaatcgacaattttctaaaatcaaaattgaaaaccaaaacaactaatttctctatttttcagttcagatttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaattattctcggagctttaattcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="-" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="106528" stop="103961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106228" g_stop="105926" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104277" g_stop="104261" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="320" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="-" ref_id="SGN-E393849" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106228" e_stop="105926"/>
          <exon e_start="104277" e_stop="104261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTA</genome_strand>
        <mrna_strand>TATATCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATTATTCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E310769" ref_strand="+" ref_description="SGN-E310769 	[cLEZ-15-L9]">
      <seq>aaatacaagactgtacagaaaatatagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115143" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115443" g_stop="115560" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="205" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="297" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="406" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="442" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="529" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119936" g_stop="119945" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="539" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E310769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115443" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGG</genome_strand>
        <mrna_strand>AAATACAAGACTGTACAGAAAATATAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E285727" ref_strand="+" ref_description="SGN-E285727 	[cLES-5-C9]">
      <seq>aaaatagagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115161" stop="120090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115461" g_stop="115560" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="279" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="388" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="424" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119790" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="446" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E285727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115461" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAAC</genome_strand>
        <mrna_strand>AAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E312658" ref_strand="+" ref_description="SGN-E312658 	[cLEZ-20-J4]">
      <seq>gaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagaaatgcaagcctgtatttctgtatgtgcatagaccaagaagaacaatgagttggaggtcctggaaatcataccaccattttgttgagaattctggaccgatacctttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaagcaagttctcttagtaacatcattgcacaggctactaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115176" stop="120306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115476" g_stop="115560" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="172" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="264" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="377" r_length="113" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="0.87"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="413" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="500" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119936" g_stop="120006" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="571" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E312658" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115476" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAG-AGGACAATGAGTTGGAGGTCCTGGAAATCATA-CACCATTTTGTTGAG-ATTCTGGACCGATA-CTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATG</genome_strand>
        <mrna_strand>GAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................AAATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAAGAACAATGAGTTGGAGGTCCTGGAAATCATACCACCATTTTGTTGAGAATTCTGGACCGATACCTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAAGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E292618" ref_strand="+" ref_description="SGN-E292618 	[cLET-11-C17]">
      <seq>gaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggatgtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115192" stop="119252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115492" g_stop="115560" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="156" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="248" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="357" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118952" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="386" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E292618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115492" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTT</genome_strand>
        <mrna_strand>GAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGATGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E238068" ref_strand="+" ref_description="SGN-E238068 	[cLED-22-K11]">
      <seq>aaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115196" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115496" g_stop="115560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="152" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="244" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="353" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="389" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="476" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119936" g_stop="119946" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="487" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E238068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115496" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGT</genome_strand>
        <mrna_strand>AAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E201575" ref_strand="+" ref_description="SGN-E201575 	[cLEC-11-E7]">
      <seq>aaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115197" stop="120374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115497" g_stop="115560" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="151" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="243" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="352" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="388" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="475" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119936" g_stop="120074" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="614" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E201575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115497" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTAT</genome_strand>
        <mrna_strand>AAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E295581" ref_strand="+" ref_description="SGN-E295581 	[cLET-23-F16]">
      <seq>aagaagaaggaggagttgtttgtaccttggatctccagccatgattcggggtgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="115218" stop="120154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115518" g_stop="115560" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="130" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="222" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="331" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="367" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119769" g_stop="119854" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="453" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E295581" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115518" e_stop="115560"/>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACA</genome_strand>
        <mrna_strand>AAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGGGTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E327729" ref_strand="+" ref_description="SGN-E327729 	[cTOC-20-E20]">
      <seq>ggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataagaatttctttgtagtaatgagttttcttctcaacctaagcgtgggtgttacttcactctgttgcctaaaactgctggtcatatatatagtacttggtcctctggtggagctagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116725" stop="120535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="119" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="211" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="320" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="356" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="443" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="120235" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="742" r_length="299" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E327729" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTA</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAAGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGGTGTTACTTCACTCTGTTGCCT-AAAACTGCTGGTCATATATATAGTACTTGGTCCTCTGGTGGAGCTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E346796" ref_strand="+" ref_description="SGN-E346796 	[cTOF-32-G16]">
      <seq>gagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagttttcttctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116725" stop="120450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="319" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="120150" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="657" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="671"/>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E346796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAA</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E242343" ref_strand="+" ref_description="SGN-E242343 	[cLEE-3-E5]">
      <seq>ggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116744" stop="120315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="102" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="339" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="120015" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="506" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E242343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGC</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E304778" ref_strand="+" ref_description="SGN-E304778 	[cLEX-10-C3]">
      <seq>tgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtccagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116736" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117056" g_stop="117142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="110" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="119768" i_length="927">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="398" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119936" g_stop="119948" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="411" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E304778" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117056" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTG</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCCAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E237765" ref_strand="+" ref_description="SGN-E237765 	[cLED-19-P22]">
      <seq>ttagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116775" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117075" g_stop="117142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="160" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="269" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="305" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="119951" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="408" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E237765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117075" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGG</genome_strand>
        <mrna_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E324648" ref_strand="+" ref_description="SGN-E324648 	[cTOC-9-O10]">
      <seq>tgaggctaaccaagtggtattcaccatattgacaaagggagagaaccaagggaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaagcagcgttcaagtgttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116793" stop="120337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117093" g_stop="117142" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.802" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="142" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="251" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="287" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="120037" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="476" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E324648" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117093" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGA</genome_strand>
        <mrna_strand>TGAGGCTAACCAAGTGGTATTCACCATATTGACAAAGGGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAAGCAGCGTTCAAGTGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E343798" ref_strand="+" ref_description="SGN-E343798 	[cTOF-12-K3]">
      <seq>gtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcancgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacantcattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="118445" stop="120293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118745" g_stop="118841" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="132" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="220" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.465" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119936" g_stop="119989" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="275" r_length="55" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E343798" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118745" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCA-CGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACA-TCATT</genome_strand>
        <mrna_strand>GTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAAT-ATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCANCGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACANTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_ests_tomato_potato" ref_id="SGN-E293634" ref_strand="+" ref_description="SGN-E293634 	[cLET-15-N8]">
      <seq>gatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagttttcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="118528" stop="120538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118828" g_stop="118841" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="50" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="137" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119936" g_stop="120244" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="446" r_length="309" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="SGN-E293634" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118828" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="120244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATC</genome_strand>
        <mrna_strand>GATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>86</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12941" PGL_stop="11756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12941" e_stop="12910"/>
            <exon e_start="12829" e_stop="12788"/>
            <exon e_start="12506" e_stop="12299"/>
            <exon e_start="12012" e_stop="11756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.969"/>
          <exon-intron don_prob="0.985" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="12941" e_stop="12910" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12909" i_stop="12830" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12829" e_stop="12788" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.925">
            <gDNA_intron_boundary i_start="12787" i_stop="12507" i_length="281"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12506" e_stop="12299" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12298" i_stop="12013" i_length="286"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="12012" e_stop="11756" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12941" stop="12910"/>
              <exon start="12829" stop="12788"/>
              <exon start="12506" stop="12299"/>
              <exon start="12012" stop="11756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAACAGCAGATGGAAAACCTGAAGAGAACA : GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG : TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACG : ATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAGATG</gDNA_template>
            <first_frame> C  N  S  R  W  K  T  *  R  E  Q :   R  K  C  W  R  K  K  I  M  I  C  V  S  G :   *  *  S  M  K  C  T  S  N  S  Q  *  Q  *  W  S  N  K  K  K  Q  Q  L  L  N  *  I  Y  L  E  N  N  H  C  C  L  N  F  H  S  L  E  I  N  T  N  L  V  L  Q  V  I  L  Q  H  I  T  F  K  L  L  T  L  L  L  P  L  P  T  :  I  D  E  E  E  L  Q  L  L  G  I  I  N  S  T  F  P  L  A  Y  L  E  A  I  Y  R  K  H  V  N  F  N  Y  M  H  L  K  D  L  L  I  V  T  N  *  G  C  L  V  L  V  Q  *  S  F  T  I  I  H  M  *  C  I  R  N  L  F  G  S  F  *  F  D  G  F  I  I  I  K  F  *  T  *  L  R   </first_frame>
            <second_frame>  A  T  A  D  G  K  P  E  E  N   : R  E  N  V  G  E  R  K  S  *  Y  V  S  V   : V  D  E  V  *  N  V  Q  A  T  A  S  S  N  D  G  A  T  R  R  S  S  N  Y  *  T  E  F  T  W  R  T  T  I  V  V  S  I  F  I  L  W  R  S  T  P  T  W  Y  Y  K  *  F  F  S  I  S  P  S  N  F  S  P  F  Y  S  L  Y  L  R :   L  M  R  R  S  C  N  C  W  G  *  L  I  L  H  F  L  W  H  I  *  K  L  Y  I  E  S  M  *  T  L  I  I  C  I  L  R  I  Y  *  L  *  L  I  K  D  V  *  Y  W  Y  N  E  V  L  L  *  F  I  C  D  V  *  E  I  C  L  G  H  F  N  L  M  D  L  *  L  *  N  F  R  L  D  *  D  </second_frame>
            <third_frame>   Q  Q  Q  M  E  N  L  K  R  T  :  E  K  M  L  E  K  E  N  H  D  M  C  Q  W  :  L  M  K  Y  E  M  Y  K  Q  Q  P  V  A  M  M  E  Q  Q  E  E  A  A  I  T  E  L  N  L  L  G  E  Q  P  L  L  S  Q  F  S  F  F  G  D  Q  H  Q  L  G  T  T  S  N  S  S  A  Y  H  L  Q  T  S  H  P  F  T  P  S  T  Y   : D  *  *  G  G  A  A  I  A  G  D  N  *  F  Y  I  S  F  G  I  F  R  S  Y  I  *  K  A  C  K  L  *  L  Y  A  S  *  G  S  I  D  C  N  *  L  R  M  S  S  I  G  T  M  K  F  Y  Y  N  S  Y  V  M  Y  K  K  F  V  W  V  I  L  I  *  W  I  Y  N  Y  K  I  L  D  L  I  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12939" stop="12910"/>
                    <exon start="12829" stop="12788"/>
                    <exon start="12506" stop="12299"/>
                    <exon start="12012" stop="12008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQQMENLKRTEKMLEKENHDMCQWLMKYEMYKQQPVAMMEQQEEAAITELNLLGEQPLLSQFSFFGDQHQLGTTSNSSAYHLQTSHPFTPSTYD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12427" stop="12299"/>
                    <exon start="12012" stop="11878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLENNHCCLNFHSLEINTNLVLQVILQHITFKLLTLLLPLPTIDEEELQLLGIINSTFPLAYLEAIYRKHVNFNYMHLKDLLIVTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16168" PGL_stop="17945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16168" e_stop="16719"/>
            <exon e_start="17779" e_stop="17945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16168" e_stop="16719" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16720" i_stop="17778" i_length="1059"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="17779" e_stop="17945" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16168" stop="16719"/>
              <exon start="17779" stop="17938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16168" stop="16719"/>
              <exon start="17779" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16186" stop="16719"/>
              <exon start="17779" stop="17945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGGCTCCCCATCTCGCTGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG : TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</gDNA_template>
            <first_frame> H  G  S  P  S  R  *  Q  F  R  N  P  N  F  S  M  N  S  *  L  R  S  F  K  F  S  D  G  G  *  L  F  N  P  R  P  Q  A  M  W  F  L  S  Y  S  R  *  N  F  V  S  A  A  L  L  R  A  P  *  H  P  P  F  K  F  T  V  L  H  R  R  R  R  F  *  Y  P  L  C  N  G  *  R  R  *  I  V  S  H  W  F  S  Y  G  R  G  P  E  *  C  C  S  D  E  E  A  E  Q  N  W  N  G  E  W  *  Y  K  R  G  A  S  V  A  Q  T  C  N  A  K  M  L  E  D  C  C  *  G  S  *  G  C  G  A  W  P  *  *  R  S  *  G  C  C  S  C  G  C  V  L  A  F  S  F  V  V  R  L  A  V  P  Q  V  W  P  C  C  C  S  T  F  P  A  Y  Q  :  L  *  L  G  C  L  E  F  Y  A  S  V  C  *  T  W  C  *  K  G  F  *  Y  L  E  S  V  R  L  S  C  S  R  M  Q  T  A  L  Q  C  I  *  P  F  Q  E  K  A  L  *  A  P  *  N  F   </first_frame>
            <second_frame>  T  A  P  H  L  A  D  S  F  E  T  L  T  S  P  *  I  L  S  S  E  A  S  N  S  A  M  E  G  D  Y  S  I  P  D  H  K  L  C  G  F  F  L  T  A  V  E  I  S  S  P  P  H  S  S  E  L  H  S  T  L  P  L  N  S  Q  C  Y  I  A  G  D  G  S  N  I  H  F  V  T  D  N  D  V  E  L  C  P  I  G  S  H  T  E  E  D  R  N  D  V  V  P  M  K  K  R  S  R  I  G  M  V  N  G  S  I  S  V  V  H  Q  L  H  K  L  V  M  Q  K  C  L  K  I  V  A  R  V  L  E  V  V  E  R  G  H  D  E  E  V  R  A  V  V  L  V  D  V  Y  L  P  L  A  L  W  S  G  W  Q  F  P  K  S  G  P  V  A  A  A  L  F  R  H  I  S :   C  D  W  D  A  W  S  S  M  L  Q  S  A  K  L  G  V  E  K  D  F  S  I  W  N  L  S  D  C  H  V  L  G  C  K  L  H  C  S  A  S  D  P  S  K  K  K  L  F  E  L  H  E  I  F  </second_frame>
            <third_frame>   R  L  P  I  S  L  T  V  S  K  P  *  L  L  H  E  F  L  A  P  K  L  Q  I  Q  R  W  R  V  I  I  Q  S  Q  T  T  S  Y  V  V  S  F  L  Q  P  L  K  F  R  L  R  R  T  P  P  S  S  I  A  P  S  L  *  I  H  S  A  T  S  P  E  T  V  L  I  S  T  L  *  R  I  T  T  L  N  C  V  P  L  V  L  I  R  K  R  T  G  M  M  L  F  R  *  R  S  G  A  E  L  E  W  *  M  V  V  *  A  W  C  I  S  C  T  N  L  *  C  K  N  A  *  R  L  L  L  G  F  L  R  L  W  S  V  A  M  M  K  K  L  G  L  L  F  L  W  M  C  T  C  L  *  L  C  G  P  V  G  S  S  P  S  L  A  L  L  L  Q  H  F  S  G  I  S   : V  V  T  G  M  L  G  V  L  C  F  S  L  L  N  L  V  L  K  R  I  L  V  F  G  I  C  P  T  V  M  F  *  D  A  N  C  I  A  V  H  L  T  L  P  R  K  S  S  L  S  S  M  K  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16217" stop="16719"/>
                    <exon start="17779" stop="17944"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSEASNSAMEGDYSIPDHKLCGFFLTAVEISSPPHSSELHSTLPLNSQCYIAGDGSNIHFVTDNDVELCPIGSHTEEDRNDVVPMKKRSRIGMVNGSISVVHQLHKLVMQKCLKIVARVLEVVERGHDEEVRAVVLVDVYLPLALWSGWQFPKSGPVAAALFRHISCDWDAWSSMLQSAKLGVEKDFSIWNLSDCHVLGCKLHCSASDPSKKKLFELHEIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18823" PGL_stop="18111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18823" e_stop="18111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="18823" e_stop="18111" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18823" stop="18111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTTTTTGAGTTTTTCCTAGAATTTCTCTCTTCAGGAAAAGAAGATGTTCCTTCATATTCATACATAAGATCTCTTTTTATCTGGCTATAGCTACTAGTACACCTCGCAGTAGACCTTCTTGGAGTAGACTGTGTGACTGTAGATGAACTGATTTCTGAAATTGCTACATGATCAGCTGAATTAACAACCATGGATCCAAGTGATGTGGAGAAGCTGTTCAAGCTTTTCTCTGGGGTTAATTTCTCTAAAGATAATTGTCCTCTTCGGCCATTGTGTCCAGTAGCTCTATTAGATGATAAAACACCAGAATTGATTGTATCTTCACTACTAAGCTCATAATAACCACACCTCCGATGAGCATTATGCATACACCAGATGACTAGTGCACCATCTGGTGGCTCTGCCAGTGTTCCCTGAGTCTTCAAAATGAGAGAAAGAGCAGTAATAGTTTTACCTAAGCCAGGCTCATCACAGAACATTCCCCCATGGAAATCCTTGATAGTAGGAGCATGCCCTGTGGTTATTTGACCAGAAACAGCATTTATATAAAAAGCAAATCCATCTTCAGTGACAAAATCCATGTACAGTGGGTGCTTAAGTAATTCAACACTACGCTCACGCTGTAACATCCAGTCAACTGCAGCCTGCTGATGAGCAAACAATTTCAGCTTCAAACATGGCATGATTGATGCAGCAAGAAATTTTAAAT</gDNA_template>
            <first_frame> S  F  F  *  V  F  P  R  I  S  L  F  R  K  R  R  C  S  F  I  F  I  H  K  I  S  F  Y  L  A  I  A  T  S  T  P  R  S  R  P  S  W  S  R  L  C  D  C  R  *  T  D  F  *  N  C  Y  M  I  S  *  I  N  N  H  G  S  K  *  C  G  E  A  V  Q  A  F  L  W  G  *  F  L  *  R  *  L  S  S  S  A  I  V  S  S  S  S  I  R  *  *  N  T  R  I  D  C  I  F  T  T  K  L  I  I  T  T  P  P  M  S  I  M  H  T  P  D  D  *  C  T  I  W  W  L  C  Q  C  S  L  S  L  Q  N  E  R  K  S  S  N  S  F  T  *  A  R  L  I  T  E  H  S  P  M  E  I  L  D  S  R  S  M  P  C  G  Y  L  T  R  N  S  I  Y  I  K  S  K  S  I  F  S  D  K  I  H  V  Q  W  V  L  K  *  F  N  T  T  L  T  L  *  H  P  V  N  C  S  L  L  M  S  K  Q  F  Q  L  Q  T  W  H  D  *  C  S  K  K  F  *   </first_frame>
            <second_frame>  L  F  F  E  F  F  L  E  F  L  S  S  G  K  E  D  V  P  S  Y  S  Y  I  R  S  L  F  I  W  L  *  L  L  V  H  L  A  V  D  L  L  G  V  D  C  V  T  V  D  E  L  I  S  E  I  A  T  *  S  A  E  L  T  T  M  D  P  S  D  V  E  K  L  F  K  L  F  S  G  V  N  F  S  K  D  N  C  P  L  R  P  L  C  P  V  A  L  L  D  D  K  T  P  E  L  I  V  S  S  L  L  S  S  *  *  P  H  L  R  *  A  L  C  I  H  Q  M  T  S  A  P  S  G  G  S  A  S  V  P  *  V  F  K  M  R  E  R  A  V  I  V  L  P  K  P  G  S  S  Q  N  I  P  P  W  K  S  L  I  V  G  A  C  P  V  V  I  *  P  E  T  A  F  I  *  K  A  N  P  S  S  V  T  K  S  M  Y  S  G  C  L  S  N  S  T  L  R  S  R  C  N  I  Q  S  T  A  A  C  *  *  A  N  N  F  S  F  K  H  G  M  I  D  A  A  R  N  F  K  </second_frame>
            <third_frame>   F  F  L  S  F  S  *  N  F  S  L  Q  E  K  K  M  F  L  H  I  H  T  *  D  L  F  L  S  G  Y  S  Y  *  Y  T  S  Q  *  T  F  L  E  *  T  V  *  L  *  M  N  *  F  L  K  L  L  H  D  Q  L  N  *  Q  P  W  I  Q  V  M  W  R  S  C  S  S  F  S  L  G  L  I  S  L  K  I  I  V  L  F  G  H  C  V  Q  *  L  Y  *  M  I  K  H  Q  N  *  L  Y  L  H  Y  *  A  H  N  N  H  T  S  D  E  H  Y  A  Y  T  R  *  L  V  H  H  L  V  A  L  P  V  F  P  E  S  S  K  *  E  K  E  Q  *  *  F  Y  L  S  Q  A  H  H  R  T  F  P  H  G  N  P  *  *  *  E  H  A  L  W  L  F  D  Q  K  Q  H  L  Y  K  K  Q  I  H  L  Q  *  Q  N  P  C  T  V  G  A  *  V  I  Q  H  Y  A  H  A  V  T  S  S  Q  L  Q  P  A  D  E  Q  T  I  S  A  S  N  M  A  *  L  M  Q  Q  E  I  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0168B23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19676" PGL_stop="20841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19676" e_stop="20373"/>
            <exon e_start="20471" e_stop="20684"/>
            <exon e_start="20793" e_stop="20841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.345" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.972"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19676" e_stop="20373" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="0.345" acc_prob="0.956">
            <gDNA_intron_boundary i_start="20374" i_stop="20470" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="20471" e_stop="20684" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20685" i_stop="20792" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="20793" e_stop="20841" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="20373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="20290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19676" stop="20289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19827" stop="20373"/>
              <exon start="20471" stop="20684"/>
              <exon start="20793" stop="20841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19827" stop="20027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG : GTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG : GATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTT</gDNA_template>
            <first_frame> K  K  R  S  V  L  M  Q  V  H  W  L  R  I  M  L  D  E  G  H  T  L  G  S  S  L  T  L  T  N  K  L  Q  M  A  V  S  L  R  A  T  N  R  W  L  L  T  G  T  P  T  P  N  T  P  S  S  Q  L  S  H  L  Q  P  L  L  K  F  L  H  D  E  T  Y  G  Q  N  Q  K  A  W  E  A  G  I  L  K  P  F  E  A  E  M  E  E  G  R  S  R  L  L  Q  L  L  H  R  C  M  I  S  A  R  K  K  D  L  Q  N  I  P  P  C  I  K  K  V  T  L  L  N  F  T  E  E  H  A  R  T  Y  N  E  L  V  E  T  V  R  R  N  I  L  M  A  D  W  N  D  P  S  H  V  E  S  L  L  N  P  K  Q  W  K  F  R  S  T  T  I  R  N  V  R  L  S  C  C  V  A  G  H  I  R  V  T  E  A  G  D  D  I  Q  E  T  M  D  I  L  V  E  D  G  L  D  P  T  S  E  E  Y  G  L  I  K  Y  H  I  L  F  G  G  N  C  M  R :   C  K  A  W  C  R  L  P  V  I  T  P  C  K  H  L  L  C  L  D  C  V  S  L  D  S  E  K  C  T  I  S  G  C  G  N  L  Y  E  M  Q  S  P  E  T  L  A  R  P  E  N  P  N  P  K  W  P  V  P  K  D  L  I  E  L  Q  P  S  Y  K  Q  :  D  D  W  N  P  D  W  Q  S  T  S  S  S  K  V  A  </first_frame>
            <second_frame>  K  R  E  V  S  *  C  K  F  I  G  *  E  L  C  *  M  K  V  I  P  L  V  Q  V  *  L  *  P  T  N  C  K  W  L  F  L  C  V  L  P  I  A  G  Y  *  L  E  H  Q  L  Q  T  P  P  V  A  S  F  L  I  C  N  P  C  L  S  F  S  M  M  K  L  M  D  R  I  R  K  P  G  K  L  V  F  S  S  H  S  K  Q  R  W  K  R  V  G  H  V  C  Y  S  Y  F  T  G  A  *  S  V  P  G  K  K  I  C  R  I  F  L  L  A  S  R  K  *  H  S  *  I  L  L  K  N  M  Q  E  L  I  M  N  W  *  K  P  C  G  E  T  Y  *  W  Q  T  G  M  I  L  L  M  L  R  V  Y  *  T  L  N  N  G  N  S  E  V  Q  P  S  E  M  *  D  F  R  A  V  *  Q  D  I  S  E  *  Q  R  Q  V  M  I  F  K  K  L  W  I  S  *  L  R  M  V  W  I  P  L  Q  R  S  M  V  *  *  N  I  T  F  Y  L  V  E  T  A  *   : G  V  K  H  G  A  V  Y  Q  *  L  H  L  V  N  I  Y  Y  A  L  T  V  F  L  *  I  A  R  S  V  Q  F  L  A  V  V  T  C  M  R  C  K  V  L  K  H  W  P  V  L  K  I  Q  I  Q  S  G  P  F  Q  R  I  *  L  S  C  N  H  L  I  N  R :   M  T  G  I  P  I  G  N  Q  H  L  A  V  K  L  L </second_frame>
            <third_frame>   K  E  K  C  P  D  A  S  S  L  A  E  N  Y  V  R  *  R  S  Y  P  W  F  K  F  N  F  D  Q  Q  T  A  N  G  C  F  F  A  C  Y  Q  S  L  V  I  N  W  N  T  N  S  K  H  P  Q  *  P  A  F  S  S  A  T  L  A  *  V  S  P  *  *  N  L  W  T  E  S  E  S  L  G  S  W  Y  S  Q  A  I  R  S  R  D  G  R  G  S  V  T  F  A  T  V  T  S  Q  V  H  D  Q  C  Q  E  K  R  F  A  E  Y  S  S  L  H  Q  E  S  N  T  L  K  F  Y  *  R  T  C  K  N  L  *  *  I  G  R  N  R  A  E  K  H  T  N  G  R  L  E  *  S  F  S  C  *  E  F  T  E  P  *  T  M  E  I  P  K  Y  N  H  Q  K  C  K  T  F  V  L  C  S  R  T  Y  Q  S  N  R  G  R  *  *  Y  S  R  N  Y  G  Y  L  S  *  G  W  S  G  S  H  F  R  G  V  W  S  D  K  I  S  H  F  I  W  W  K  L  H  E  :  V  *  S  M  V  P  S  T  S  D  Y  T  L  *  T  S  I  M  P  *  L  C  F  F  R  *  R  E  V  Y  N  F  W  L  W  *  L  V  *  D  A  K  S  *  N  T  G  P  S  *  K  S  K  S  K  V  A  R  S  K  G  S  D  *  V  A  T  I  L  *  T   : G  *  L  E  S  R  L  A  I  N  I  *  Q  *  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19676" stop="20373"/>
                    <exon start="20471" stop="20684"/>
                    <exon start="20793" stop="20840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRSVLMQVHWLRIMLDEGHTLGSSLTLTNKLQMAVSLRATNRWLLTGTPTPNTPSSQLSHLQPLLKFLHDETYGQNQKAWEAGILKPFEAEMEEGRSRLLQLLHRCMISARKKDLQNIPPCIKKVTLLNFTEEHARTYNELVETVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIRVTEAGDDIQETMDILVEDGLDPTSEEYGLIKYHILFGGNCMRCKAWCRLPVITPCKHLLCLDCVSLDSEKCTISGCGNLYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26838" PGL_stop="27533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26838" e_stop="27533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="26838" e_stop="27533" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26838" stop="27533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATTTTGCGTTTAATTAATAAATTTTCAAAATACAAAAAATGTTTTTAAGTACTTATATTTCTTTAAAATCCTTTCGGGGAAAAGGTTCCTTTTTTATCTTTTGAAAAACAATTCTTGTTATTCATAAAAATATACACTTTTAACCTCATAAAAAATTTAACCATCCAAAAATAAAATATTCAACATCTACCATTCTACTTTATTCCTTTTATAAAAATAAAATAAATTGATAGCACTTTATTCCTAATCATCAACCCATCATCTACAATTATTCCCATTTTTTTTTCCAATTTCAAAGTTAGATTGATTAGCGGGTCCCGCTTAATTTAATTTAAAATACAAAATCCAATTTACCCTAAGATAGGAACTTATACCATAACTTTAAACTTTAGGGAAAATATACACCTTAACTTGTATATACACTTGATAACTCATTGGAAACTACATGCTAGCTCTCTAAGCTTCTAACCTAATTGAGTATGTGTGATACATTCTTCTTCTAGGTTCCTTCTTTCATAATCAGAGCTCGGAAAAAGAAGAGATTTACTAAAGGAAAATCTAGCTATATTACTATTTTTTTGTACCAAATTTTGATTGTAAATTAATTGGATATCACACCTTCACGTTGGAGAGGTTCAATCCTTACTATAACTTGTTGTACTGCTGCCTCTCTAATATTATTATTAGTAGT</gDNA_template>
            <first_frame> K  *  F  C  V  *  L  I  N  F  Q  N  T  K  N  V  F  K  Y  L  Y  F  F  K  I  L  S  G  K  R  F  L  F  Y  L  L  K  N  N  S  C  Y  S  *  K  Y  T  L  L  T  S  *  K  I  *  P  S  K  N  K  I  F  N  I  Y  H  S  T  L  F  L  L  *  K  *  N  K  L  I  A  L  Y  S  *  S  S  T  H  H  L  Q  L  F  P  F  F  F  P  I  S  K  L  D  *  L  A  G  P  A  *  F  N  L  K  Y  K  I  Q  F  T  L  R  *  E  L  I  P  *  L  *  T  L  G  K  I  Y  T  L  T  C  I  Y  T  *  *  L  I  G  N  Y  M  L  A  L  *  A  S  N  L  I  E  Y  V  *  Y  I  L  L  L  G  S  F  F  H  N  Q  S  S  E  K  E  E  I  Y  *  R  K  I  *  L  Y  Y  Y  F  F  V  P  N  F  D  C  K  L  I  G  Y  H  T  F  T  L  E  R  F  N  P  Y  Y  N  L  L  Y  C  C  L  S  N  I  I  I  S  S </first_frame>
            <second_frame>  N  N  F  A  F  N  *  *  I  F  K  I  Q  K  M  F  L  S  T  Y  I  S  L  K  S  F  R  G  K  G  S  F  F  I  F  *  K  T  I  L  V  I  H  K  N  I  H  F  *  P  H  K  K  F  N  H  P  K  I  K  Y  S  T  S  T  I  L  L  Y  S  F  Y  K  N  K  I  N  *  *  H  F  I  P  N  H  Q  P  I  I  Y  N  Y  S  H  F  F  F  Q  F  Q  S  *  I  D  *  R  V  P  L  N  L  I  *  N  T  K  S  N  L  P  *  D  R  N  L  Y  H  N  F  K  L  *  G  K  Y  T  P  *  L  V  Y  T  L  D  N  S  L  E  T  T  C  *  L  S  K  L  L  T  *  L  S  M  C  D  T  F  F  F  *  V  P  S  F  I  I  R  A  R  K  K  K  R  F  T  K  G  K  S  S  Y  I  T  I  F  L  Y  Q  I  L  I  V  N  *  L  D  I  T  P  S  R  W  R  G  S  I  L  T  I  T  C  C  T  A  A  S  L  I  L  L  L  V   </second_frame>
            <third_frame>   I  I  L  R  L  I  N  K  F  S  K  Y  K  K  C  F  *  V  L  I  F  L  *  N  P  F  G  E  K  V  P  F  L  S  F  E  K  Q  F  L  L  F  I  K  I  Y  T  F  N  L  I  K  N  L  T  I  Q  K  *  N  I  Q  H  L  P  F  Y  F  I  P  F  I  K  I  K  *  I  D  S  T  L  F  L  I  I  N  P  S  S  T  I  I  P  I  F  F  S  N  F  K  V  R  L  I  S  G  S  R  L  I  *  F  K  I  Q  N  P  I  Y  P  K  I  G  T  Y  T  I  T  L  N  F  R  E  N  I  H  L  N  L  Y  I  H  L  I  T  H  W  K  L  H  A  S  S  L  S  F  *  P  N  *  V  C  V  I  H  S  S  S  R  F  L  L  S  *  S  E  L  G  K  R  R  D  L  L  K  E  N  L  A  I  L  L  F  F  C  T  K  F  *  L  *  I  N  W  I  S  H  L  H  V  G  E  V  Q  S  L  L  *  L  V  V  L  L  P  L  *  Y  Y  Y  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0168B23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="27888" PGL_stop="27208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27888" e_stop="27208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27888" e_stop="27208" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27888" stop="27374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTT</gDNA_template>
            <first_frame> C  I  *  V  L  *  L  N  I  G  *  S  I  I  K  S  Y  K  *  Q  Q  L  F  F  H  K  I  S  Q  *  R  D  Q  E  K  S  A  Q  D  I  S  S  Y  N  I  *  Y  Y  *  T  K  T  S  G  A  R  L  *  M  C  H  L  L  I  R  V  W  S  W  R  Q  N  Q  S  A  T  *  V  Q  P  W  V  P  C  S  M  Y  *  *  M  A  Q  F  T  L  F  L  P  Y  L  *  A  L  P  H  *  H  L  R  K  N  C  *  W  W  Q  F  F  Y  Y  *  *  *  Y  *  R  G  S  S  T  T  S  Y  S  K  D  *  T  S  P  T  *  R  C  D  I  Q  L  I  Y  N  Q  N  L  V  Q  K  N  S  N  I  A  R  F  S  F  S  K  S  L  L  F  P  S  S  D  Y  E  R  R  N  L  E  E  E  C  I  T  H  T  Q  L  G  *  K  L  R  E  L  A  C  S  F  Q  *  V  I  K  C  I  Y  K  L  R  C  I  F  S  L  K  F  K  V  M  V  *  V </first_frame>
            <second_frame>  A  F  K  C  S  S  L  I  L  A  D  P  S  S  N  H  T  S  N  N  N  S  S  S  T  K  L  V  N  R  G  I  K  K  K  A  L  K  T  F  P  V  I  T  Y  S  T  T  E  P  K  H  P  G  L  D  S  E  C  V  I  C  L  S  E  F  G  V  G  D  K  I  K  V  L  P  K  C  N  H  G  F  H  V  R  C  I  D  K  W  L  N  S  H  S  S  C  P  T  C  R  H  S  L  I  D  T  C  E  K  I  V  N  G  G  N  S  S  T  T  N  N  N  I  R  E  A  A  V  Q  Q  V  I  V  R  I  E  P  L  Q  R  E  G  V  I  S  N  *  F  T  I  K  I  W  Y  K  K  I  V  I  *  L  D  F  P  L  V  N  L  F  F  F  R  A  L  I  M  K  E  G  T  *  K  K  N  V  S  H  I  L  N  *  V  R  S  L  E  S  *  H  V  V  S  N  E  L  S  S  V  Y  T  S  *  G  V  Y  F  P  *  S  L  K  L  W  Y  K   </second_frame>
            <third_frame>   H  L  S  A  L  A  *  Y  W  L  I  H  H  Q  I  I  Q  V  T  T  T  L  L  P  Q  N  *  S  I  E  G  S  R  K  K  R  S  R  H  F  Q  L  *  H  I  V  L  L  N  Q  N  I  R  G  S  T  L  N  V  S  F  A  Y  Q  S  L  E  L  E  T  K  S  K  C  Y  L  S  A  T  M  G  S  M  F  D  V  L  I  N  G  S  I  H  T  L  L  A  L  L  V  G  T  P  S  L  T  L  A  K  K  L  L  M  V  A  I  L  L  L  L  I  I  I  L  E  R  Q  Q  Y  N  K  L  *  *  G  L  N  L  S  N  V  K  V  *  Y  P  I  N  L  Q  S  K  F  G  T  K  K  *  *  Y  S  *  I  F  L  *  *  I  S  S  F  S  E  L  *  L  *  K  K  E  P  R  R  R  M  Y  H  T  Y  S  I  R  L  E  A  *  R  A  S  M  *  F  P  M  S  Y  Q  V  Y  I  Q  V  K  V  Y  I  F  P  K  V  *  S  Y  G  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27887" stop="27444"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKCSSLILADPSSNHTSNNNSSSTKLVNRGIKKKALKTFPVITYSTTEPKHPGLDSECVICLSEFGVGDKIKVLPKCNHGFHVRCIDKWLNSHSSCPTCRHSLIDTCEKIVNGGNSSTTNNNIREAAVQQVIVRIEPLQREGVISN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32368" PGL_stop="31661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32368" e_stop="31661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="32368" e_stop="31661" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32368" stop="31661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</gDNA_template>
            <first_frame> I  S  Q  Q  F  L  S  Y  I  I  F  L  F  Y  F  Q  D  *  L  L  S  I  A  H  L  R  I  I  L  L  N  I  I  S  F  G  F  V  G  H  L  Q  S  F  F  L  F  S  L  C  S  F  Y  E  R  F  S  F  L  H  I  R  D  L  K  R  L  G  G  Q  K  I  F  I  F  L  R  I  Q  K  I  *  K  D  H  M  V  K  I  S  *  F  Q  P  I  R  D  L  N  I  P  S  G  Q  E  M  F  I  S  T  H  T  R  S  A  V  K  I  S  *  F  P  I  G  I  I  L  L  I  V  K  R  E  F  L  F  Y  D  G  S  S  Q  G  Q  *  I  *  I  S  R  N  R  E  N  K  D  I  I  K  I  Q  *  I  K  D  Y  T  Q  P  E  K  L  D  *  I  P  R  K  A  L  V  S  L  P  F  S  S  F  H  R  T  *  W  L  H  *  K  A  S  L  L  T  F  R  I  H  G  W  K  S  E  K  A  V  F  N  F  R  F  S  *  R  K  S  S  I  L  D  S  K  T  S  K  Q  A  F </first_frame>
            <second_frame>  S  L  N  N  F  Y  H  I  S  Y  F  Y  F  I  F  R  I  D  C  F  L  S  L  T  F  V  S  F  S  L  I  L  Y  L  L  V  L  *  A  T  Y  N  L  F  F  F  L  V  Y  V  R  F  M  R  D  F  H  F  Y  T  Y  E  I  *  K  D  *  V  V  K  K  S  S  Y  F  Y  A  Y  K  R  S  E  K  T  I  W  S  K  Y  H  N  F  N  L  Y  E  I  *  I  Y  Q  V  V  K  R  C  S  F  L  P  I  R  D  R  R  S  R  Y  L  N  S  L  L  V  *  Y  C  *  *  *  R  E  N  F  Y  F  M  M  D  H  H  R  D  N  E  F  E  Y  Q  E  I  E  K  T  K  T  S  S  K  F  N  R  S  R  T  I  H  S  P  R  N  S  I  E  F  P  E  K  P  L  Y  L  Y  P  S  P  H  S  I  E  R  N  G  S  I  K  K  L  H  C  S  P  L  G  S  M  V  G  K  V  K  K  L  Y  S  I  F  D  S  R  K  E  N  P  R  S  S  I  P  K  P  Q  S  K  H   </second_frame>
            <third_frame>   L  S  T  I  S  I  I  Y  H  I  F  I  L  F  S  G  L  I  A  F  Y  R  S  P  S  Y  H  S  P  *  Y  Y  I  F  W  F  C  R  P  L  T  I  F  F  S  F  *  F  M  F  V  L  *  E  I  F  I  S  T  H  T  R  F  E  K  T  R  W  S  K  N  L  H  I  S  T  H  T  K  D  L  K  R  P  Y  G  Q  N  I  I  I  S  T  Y  T  R  F  E  Y  T  K  W  S  R  D  V  H  F  Y  P  Y  E  I  G  G  Q  D  I  L  I  P  Y  W  Y  N  I  V  N  S  K  E  R  I  F  I  L  *  W  I  I  T  G  T  M  N  L  N  I  K  K  S  R  K  Q  R  H  H  Q  N  S  I  D  Q  G  L  Y  T  A  R  E  T  R  L  N  S  P  K  S  P  C  I  S  T  L  L  L  I  P  S  N  V  M  A  P  L  K  S  F  I  A  H  L  *  D  P  W  L  E  K  *  K  S  C  I  Q  F  S  I  L  V  K  K  I  L  D  P  R  F  Q  N  L  K  A  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31977" stop="31663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RENFYFMMDHHRDNEFEYQEIEKTKTSSKFNRSRTIHSPRNSIEFPEKPLYLYPSPHSIERNGSIKKLHCSPLGSMVGKVKKLYSIFDSRKENPRSSIPKPQSKH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32207" stop="31956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIFISTHTRFEKTRWSKNLHISTHTKDLKRPYGQNIIISTYTRFEYTKWSRDVHFYPYEIGGQDILIPYWYNIVNSKERIFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="34225" PGL_stop="33664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34225" e_stop="33664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="34225" e_stop="33664" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34225" stop="33669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429510" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34009" stop="33669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457403" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33858" stop="33664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGAGGTATTTGATCCAGTGATCTCTCTGGCAGAATCTAGGGTGCTGACAGCTCTCGGTTGTTCTGTCCTAACAGTCAATGAACAGGGTAGACGGCAAGCTTTAAGACCTACGATGTTCTTCATGCCACATTGTGATGCTGAACTATATGAGAATCTTCTAGAGGCAAATTGGAGGCATGATCTATTGGGTAATATGATACTGTTTGGAAATAGTTTTGAGGCGTATGAGCAACACGTGTCAGAGTGCAAAAACCTTAGACTTGCTGATTCTAGGAAGCATATCATAGCAATCAGGCAGTTTGTAAATGAGCTTCCCATTGATTCTAGGAAGCAGATTGTAGCATTCAGGCAGTTTGTAAAAGAGCGTTCCATTGATCCCTTTTCAGACGATCAATTTCGTGCCTTCCATGGTTCAAGTTGGCATTTTTTCGACATTGATCCTCATTCAGATTTATGTGATGCTAAACCATGAACACTTTTTTTTCTGGATTGTACCTCTTCATTGGAACTGAATATCAAAATTTTATTATGATTTAGGAAAATGTTCTTTCTTTACCTTT</gDNA_template>
            <first_frame> V  E  V  F  D  P  V  I  S  L  A  E  S  R  V  L  T  A  L  G  C  S  V  L  T  V  N  E  Q  G  R  R  Q  A  L  R  P  T  M  F  F  M  P  H  C  D  A  E  L  Y  E  N  L  L  E  A  N  W  R  H  D  L  L  G  N  M  I  L  F  G  N  S  F  E  A  Y  E  Q  H  V  S  E  C  K  N  L  R  L  A  D  S  R  K  H  I  I  A  I  R  Q  F  V  N  E  L  P  I  D  S  R  K  Q  I  V  A  F  R  Q  F  V  K  E  R  S  I  D  P  F  S  D  D  Q  F  R  A  F  H  G  S  S  W  H  F  F  D  I  D  P  H  S  D  L  C  D  A  K  P  *  T  L  F  F  L  D  C  T  S  S  L  E  L  N  I  K  I  L  L  *  F  R  K  M  F  F  L  Y  L  </first_frame>
            <second_frame>  *  R  Y  L  I  Q  *  S  L  W  Q  N  L  G  C  *  Q  L  S  V  V  L  S  *  Q  S  M  N  R  V  D  G  K  L  *  D  L  R  C  S  S  C  H  I  V  M  L  N  Y  M  R  I  F  *  R  Q  I  G  G  M  I  Y  W  V  I  *  Y  C  L  E  I  V  L  R  R  M  S  N  T  C  Q  S  A  K  T  L  D  L  L  I  L  G  S  I  S  *  Q  S  G  S  L  *  M  S  F  P  L  I  L  G  S  R  L  *  H  S  G  S  L  *  K  S  V  P  L  I  P  F  Q  T  I  N  F  V  P  S  M  V  Q  V  G  I  F  S  T  L  I  L  I  Q  I  Y  V  M  L  N  H  E  H  F  F  F  W  I  V  P  L  H  W  N  *  I  S  K  F  Y  Y  D  L  G  K  C  S  F  F  T  F </second_frame>
            <third_frame>   R  G  I  *  S  S  D  L  S  G  R  I  *  G  A  D  S  S  R  L  F  C  P  N  S  Q  *  T  G  *  T  A  S  F  K  T  Y  D  V  L  H  A  T  L  *  C  *  T  I  *  E  S  S  R  G  K  L  E  A  *  S  I  G  *  Y  D  T  V  W  K  *  F  *  G  V  *  A  T  R  V  R  V  Q  K  P  *  T  C  *  F  *  E  A  Y  H  S  N  Q  A  V  C  K  *  A  S  H  *  F  *  E  A  D  C  S  I  Q  A  V  C  K  R  A  F  H  *  S  L  F  R  R  S  I  S  C  L  P  W  F  K  L  A  F  F  R  H  *  S  S  F  R  F  M  *  C  *  T  M  N  T  F  F  S  G  L  Y  L  F  I  G  T  E  Y  Q  N  F  I  M  I  *  E  N  V  L  S  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34225" stop="33752"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVFDPVISLAESRVLTALGCSVLTVNEQGRRQALRPTMFFMPHCDAELYENLLEANWRHDLLGNMILFGNSFEAYEQHVSECKNLRLADSRKHIIAIRQFVNELPIDSRKQIVAFRQFVKERSIDPFSDDQFRAFHGSSWHFFDIDPHSDLCDAKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="35379" PGL_stop="34839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35379" e_stop="34839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35379" e_stop="34839" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35379" stop="34839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35378" stop="34839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</gDNA_template>
            <first_frame> W  C  W  T  S  L  A  D  T  N  *  L  G  I  E  Q  G  K  Y  P  S  I  *  S  S  F  L  V  I  I  S  F  F  F  L  W  I  V  A  S  I  S  I  L  L  S  L  R  *  V  F  N  L  A  *  K  E  M  Y  L  S  R  R  N  L  Q  D  L  L  C  Y  C  S  I  K  Y  Q  N  L  *  L  F  C  N  T  D  L  I  C  V  Y  S  K  Y  *  N  C  N  M  C  *  L  C  A  Y  I  S  V  N  V  *  Y  V  Y  T  L  F  I  L  L  *  P  *  K  R  S  S  Y  S  F  L  *  N  L  Y  S  F  S  P  K  S  S  K  D  N  H  R  A  A  I  T  L  N  S  V  *  K  K  S  *  K  P  Q  K  V  A  L  S  V  C  V  L  S  S  D  L  Y  L  F  F  </first_frame>
            <second_frame>  G  V  G  L  H  *  R  T  P  T  N  W  G  L  N  R  E  N  T  L  R  F  D  Q  V  F  W  *  S  F  P  S  S  F  C  G  L  L  P  Q  Y  L  Y  Y  Y  L  C  V  E  C  L  T  W  H  E  K  K  C  T  Y  Q  G  E  I  F  K  I  C  F  V  I  V  L  S  S  T  K  T  Y  D  S  F  A  T  L  T  *  Y  V  Y  I  V  N  T  K  T  V  I  C  V  N  S  V  L  I  F  L  L  M  F  D  M  S  T  L  F  S  Y  C  Y  D  L  E  K  D  H  L  T  A  F  S  R  T  C  I  H  F  L  L  K  A  Q  K  T  I  I  G  Q  Q  S  L  L  I  Q  Y  E  K  S  L  E  N  L  K  K  *  H  F  L  Y  A  C  *  V  V  I  C  I  F  F  F </second_frame>
            <third_frame>   V  L  D  F  I  S  G  H  Q  L  I  G  D  *  T  G  K  I  P  F  D  L  I  K  F  S  G  D  H  F  L  L  L  F  V  D  C  C  L  N  I  Y  I  I  I  F  A  L  S  V  *  L  G  M  K  R  N  V  L  I  K  E  K  S  S  R  F  A  L  L  L  F  Y  Q  V  P  K  L  M  T  L  L  Q  H  *  L  N  M  C  I  *  *  I  L  K  L  *  Y  V  L  T  L  C  L  Y  F  C  *  C  L  I  C  L  H  S  F  H  I  V  M  T  L  K  K  I  I  L  Q  L  S  L  E  P  V  F  I  F  S  *  K  L  K  R  Q  S  *  G  S  N  H  S  *  F  S  M  K  K  V  L  K  T  S  K  S  S  T  F  C  M  R  V  E  *  *  F  V  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35117" stop="34884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVYIVNTKTVICVNSVLIFLLMFDMSTLFSYCYDLEKDHLTAFSRTCIHFLLKAQKTIIGQQSLLIQYEKSLENLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40682" PGL_stop="41443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40682" e_stop="41443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="40682" e_stop="41443" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40682" stop="41443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40682" stop="41314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCTGCATTTATCCAACCCAGAAAAATACTAAAAAGTTCGATGACGACCGAATTTTAGCTGGTAACAGAATGAACCAAGGAAGAGAGCAATTTCCAGTCCATAAATAAAACTAGCATCAAAATGCCCAACAGCAGAGACCCTAGCTGCCAATAAGACATCAATTTTCTAATGTTTTGCCTTAACTAAATGTGCCTTTCAGCTGTGACTTCAAAAATACGAGACTCAGGTTTCTTATGGGTAACGCGCCAAGATAACTATATATAATTACAGAACTAGAAAACAGGGGCAATGCAAGAGGCAGAAATTGCATCATGTCAGCTGTTCAAAGCCGGAGGTCGAAACATTATTTGGTTTTGGAGTAGGACAACCAGTATGCTTGTTGGTTTTGTTCTTCTCCTCTGCCTGTGTGGAAGTCAATTTCTCGCTGTGAAACAAACTTTCACCCAATTCTGACTCATGTTTCCTCTTCACTTTCTTTTTTGGCACCGCATCTGCTCCTCGTGGATCAACAGAGCTGCCAGAAACTCCCTTTAGCTTCTCCTGCTTTAGACGATTCACATCAGAACCATTAGCTATGGAAACATGCACTCGTGCAGAAGCATTTACAGCTGCACTACTGTATACTGGCTTGTTTGTTGAAGTTGAAGAATGATCAACTACAATCTTTTCTTGGATATGCACCGACTGGGCAATAGGTCCAGCATCTACTCTACTAGTATCCCCTTCCTTTGTGGCCAATAATTTGTTCCTCCTAATTTT</gDNA_template>
            <first_frame> N  P  A  F  I  Q  P  R  K  I  L  K  S  S  M  T  T  E  F  *  L  V  T  E  *  T  K  E  E  S  N  F  Q  S  I  N  K  T  S  I  K  M  P  N  S  R  D  P  S  C  Q  *  D  I  N  F  L  M  F  C  L  N  *  M  C  L  S  A  V  T  S  K  I  R  D  S  G  F  L  W  V  T  R  Q  D  N  Y  I  *  L  Q  N  *  K  T  G  A  M  Q  E  A  E  I  A  S  C  Q  L  F  K  A  G  G  R  N  I  I  W  F  W  S  R  T  T  S  M  L  V  G  F  V  L  L  L  C  L  C  G  S  Q  F  L  A  V  K  Q  T  F  T  Q  F  *  L  M  F  P  L  H  F  L  F  W  H  R  I  C  S  S  W  I  N  R  A  A  R  N  S  L  *  L  L  L  L  *  T  I  H  I  R  T  I  S  Y  G  N  M  H  S  C  R  S  I  Y  S  C  T  T  V  Y  W  L  V  C  *  S  *  R  M  I  N  Y  N  L  F  L  D  M  H  R  L  G  N  R  S  S  I  Y  S  T  S  I  P  F  L  C  G  Q  *  F  V  P  P  N  F </first_frame>
            <second_frame>  I  L  H  L  S  N  P  E  K  Y  *  K  V  R  *  R  P  N  F  S  W  *  Q  N  E  P  R  K  R  A  I  S  S  P  *  I  K  L  A  S  K  C  P  T  A  E  T  L  A  A  N  K  T  S  I  F  *  C  F  A  L  T  K  C  A  F  Q  L  *  L  Q  K  Y  E  T  Q  V  S  Y  G  *  R  A  K  I  T  I  Y  N  Y  R  T  R  K  Q  G  Q  C  K  R  Q  K  L  H  H  V  S  C  S  K  P  E  V  E  T  L  F  G  F  G  V  G  Q  P  V  C  L  L  V  L  F  F  S  S  A  C  V  E  V  N  F  S  L  *  N  K  L  S  P  N  S  D  S  C  F  L  F  T  F  F  F  G  T  A  S  A  P  R  G  S  T  E  L  P  E  T  P  F  S  F  S  C  F  R  R  F  T  S  E  P  L  A  M  E  T  C  T  R  A  E  A  F  T  A  A  L  L  Y  T  G  L  F  V  E  V  E  E  *  S  T  T  I  F  S  W  I  C  T  D  W  A  I  G  P  A  S  T  L  L  V  S  P  S  F  V  A  N  N  L  F  L  L  I   </second_frame>
            <third_frame>   S  C  I  Y  P  T  Q  K  N  T  K  K  F  D  D  D  R  I  L  A  G  N  R  M  N  Q  G  R  E  Q  F  P  V  H  K  *  N  *  H  Q  N  A  Q  Q  Q  R  P  *  L  P  I  R  H  Q  F  S  N  V  L  P  *  L  N  V  P  F  S  C  D  F  K  N  T  R  L  R  F  L  M  G  N  A  P  R  *  L  Y  I  I  T  E  L  E  N  R  G  N  A  R  G  R  N  C  I  M  S  A  V  Q  S  R  R  S  K  H  Y  L  V  L  E  *  D  N  Q  Y  A  C  W  F  C  S  S  P  L  P  V  W  K  S  I  S  R  C  E  T  N  F  H  P  I  L  T  H  V  S  S  S  L  S  F  L  A  P  H  L  L  L  V  D  Q  Q  S  C  Q  K  L  P  L  A  S  P  A  L  D  D  S  H  Q  N  H  *  L  W  K  H  A  L  V  Q  K  H  L  Q  L  H  Y  C  I  L  A  C  L  L  K  L  K  N  D  Q  L  Q  S  F  L  G  Y  A  P  T  G  Q  *  V  Q  H  L  L  Y  *  Y  P  L  P  L  W  P  I  I  C  S  S  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41115" stop="41336"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLSPNSDSCFLFTFFFGTASAPRGSTELPETPFSFSCFRRFTSEPLAMETCTRAEAFTAALLYTGLFVEVEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41047" stop="41256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQYACWFCSSPLPVWKSISRCETNFHPILTHVSSSLSFLAPHLLLVDQQSCQKLPLASPALDDSHQNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="42434" PGL_stop="40759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42434" e_stop="42428"/>
            <exon e_start="42319" e_stop="42272"/>
            <exon e_start="41868" e_stop="41767"/>
            <exon e_start="41452" e_stop="40759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.574" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42434" e_stop="42428" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.574" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42427" i_stop="42320" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42319" e_stop="42272" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.722" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42271" i_stop="41869" i_length="403"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="41868" e_stop="41767" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41766" i_stop="41453" i_length="314"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="41452" e_stop="40759" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42434" stop="42428"/>
              <exon start="42319" stop="42272"/>
              <exon start="41868" stop="41767"/>
              <exon start="41452" stop="40997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41433" stop="41227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41354" stop="40759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41016" stop="40767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230789" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGAG : GGCCTGGATGAAGATGCTGGTCCACAAGTCAGAAAGTTGTATGCAGAG : CTTGCAGGATGTTGGCCAAATGGATTTATGGACAATCATGGTATTAAACGTGCTATATGTAGAGCAAAAGATAGGAGGAGAGCATTGCACGCACGACGTAAG : GACGGAGAGAAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTG</gDNA_template>
            <first_frame> C  *   : G  P  G  *  R  C  W  S  T  S  Q  K  V  V  C  R   : A  C  R  M  L  A  K  W  I  Y  G  Q  S  W  Y  *  T  C  Y  M  *  S  K  R  *  E  E  S  I  A  R  T  T  *   : G  R  R  E  N  *  E  E  Q  I  I  G  H  K  G  R  G  Y  *  *  S  R  C  W  T  Y  C  P  V  G  A  Y  P  R  K  D  C  S  *  S  F  F  N  F  N  K  Q  A  S  I  Q  *  C  S  C  K  C  F  C  T  S  A  C  F  H  S  *  W  F  *  C  E  S  S  K  A  G  E  A  K  G  S  F  W  Q  L  C  *  S  T  R  S  R  C  G  A  K  K  E  S  E  E  E  T  *  V  R  I  G  *  K  F  V  S  Q  R  E  I  D  F  H  T  G  R  G  E  E  Q  N  Q  Q  A  Y  W  L  S  Y  S  K  T  K  *  C  F  D  L  R  L  *  T  A  D  M  M  Q  F  L  P  L  A  L  P  L  F  S  S  S  V  I  I  Y  S  Y  L  G  A  L  P  I  R  N  L  S  L  V  F  L  K  S  Q  L  K  G  T  F  S  *  G  K  T  L  E  N  *  C  L  I  G  S  *  G  L  C  C  W  A  F  *  C  *  F  Y  L  W  T  G  N  C  S  L  P   </first_frame>
            <second_frame>  V  E  :  G  L  D  E  D  A  G  P  Q  V  R  K  L  Y  A  E  :  L  A  G  C  W  P  N  G  F  M  D  N  H  G  I  K  R  A  I  C  R  A  K  D  R  R  R  A  L  H  A  R  R  K  :  D  G  E  K  I  R  R  N  K  L  L  A  T  K  E  G  D  T  S  R  V  D  A  G  P  I  A  Q  S  V  H  I  Q  E  K  I  V  V  D  H  S  S  T  S  T  N  K  P  V  Y  S  S  A  A  V  N  A  S  A  R  V  H  V  S  I  A  N  G  S  D  V  N  R  L  K  Q  E  K  L  K  G  V  S  G  S  S  V  D  P  R  G  A  D  A  V  P  K  K  K  V  K  R  K  H  E  S  E  L  G  E  S  L  F  H  S  E  K  L  T  S  T  Q  A  E  E  K  N  K  T  N  K  H  T  G  C  P  T  P  K  P  N  N  V  S  T  S  G  F  E  Q  L  T  *  C  N  F  C  L  L  H  C  P  C  F  L  V  L  *  L  Y  I  V  I  L  A  R  Y  P  *  E  T  *  V  S  Y  F  *  S  H  S  *  K  A  H  L  V  K  A  K  H  *  K  I  D  V  L  L  A  A  R  V  S  A  V  G  H  F  D  A  S  F  I  Y  G  L  E  I  A  L  F  L  </second_frame>
            <third_frame>   L  R :   A  W  M  K  M  L  V  H  K  S  E  S  C  M  Q  S :   L  Q  D  V  G  Q  M  D  L  W  T  I  M  V  L  N  V  L  Y  V  E  Q  K  I  G  G  E  H  C  T  H  D  V  R :   T  E  R  K  L  G  G  T  N  Y  W  P  Q  R  K  G  I  L  V  E  *  M  L  D  L  L  P  S  R  C  I  S  K  K  R  L  *  L  I  I  L  Q  L  Q  Q  T  S  Q  Y  T  V  V  Q  L  *  M  L  L  H  E  C  M  F  P  *  L  M  V  L  M  *  I  V  *  S  R  R  S  *  R  E  F  L  A  A  L  L  I  H  E  E  Q  M  R  C  Q  K  R  K  *  R  G  N  M  S  Q  N  W  V  K  V  C  F  T  A  R  N  *  L  P  H  R  Q  R  R  R  T  K  P  T  S  I  L  V  V  L  L  Q  N  Q  I  M  F  R  P  P  A  L  N  S  *  H  D  A  I  S  A  S  C  I  A  P  V  F  *  F  C  N  Y  I  *  L  S  W  R  V  T  H  K  K  P  E  S  R  I  F  E  V  T  A  E  R  H  I  *  L  R  Q  N  I  R  K  L  M  S  Y  W  Q  L  G  S  L  L  L  G  I  L  M  L  V  L  F  M  D  W  K  L  L  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42433" stop="42428"/>
                    <exon start="42319" stop="42272"/>
                    <exon start="41868" stop="41767"/>
                    <exon start="41452" stop="40994"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEGLDEDAGPQVRKLYAELAGCWPNGFMDNHGIKRAICRAKDRRRALHARRKDGEKIRRNKLLATKEGDTSRVDAGPIAQSVHIQEKIVVDHSSTSTNKPVYSSAAVNASARVHVSIANGSDVNRLKQEKLKGVSGSSVDPRGADAVPKKKVKRKHESELGESLFHSEKLTSTQAEEKNKTNKHTGCPTPKPNNVSTSGFEQLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="47210" PGL_stop="44628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47210" e_stop="46871"/>
            <exon e_start="45200" e_stop="45101"/>
            <exon e_start="44934" e_stop="44825"/>
            <exon e_start="44714" e_stop="44628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47210" e_stop="46871" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46870" i_stop="45201" i_length="1670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45200" e_stop="45101" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45100" i_stop="44935" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44934" e_stop="44825" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.923">
            <gDNA_intron_boundary i_start="44824" i_stop="44715" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="44714" e_stop="44628" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47210" stop="46871"/>
              <exon start="45200" stop="45101"/>
              <exon start="44934" stop="44825"/>
              <exon start="44714" stop="44628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG : AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT : TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG : CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAGCTTCGCACATTGAAG</gDNA_template>
            <first_frame> F  *  N  T  N  N  K  E  S  C  R  Y  P  R  Y  V  G  A  I  S  I  S  I  I  A  W  Q  F  C  R  R  K  R  P  *  P  A  E  N  W  S  H  P  I  Q  E  S  R  *  Q  I  K  R  W  F  *  N  I  W  K  I  I  S  E  V  T  *  Q  K  F  L  C  S  R  E  I  *  C  W  K  I  S  K  Y  F  *  R  N  R  P  V  C  S  A  P  *  *  E  V  *  C  Q  W  L  *  G  K  E  L  R  S  D  Y   : E  R  S  C  Y  A  E  K  G  R  I  E  W  *  T  K  R  Y  N  A  *  E  G  H  Q  G  F  G  E  D  R  C  R  I :   K  A  T  K  Y  G  G  S  G  C  *  *  F  I  S  G  Y  Q  K  E  V  T  T  *  N  K  A  E  A  G  K  S  C  P  T  G   : A  S  *  S  W  K  N  I  Q  *  V  N  *  S  F  N  E  Y  C  R  P  L  D  T  A  S  H  I  E  </first_frame>
            <second_frame>  S  E  I  P  T  T  K  K  A  A  D  T  Q  D  M  S  E  L  S  P  S  A  S  L  R  G  N  S  A  E  E  K  D  L  D  Q  Q  K  I  G  V  T  Q  S  K  N  L  G  D  K  L  K  D  G  S  E  I  S  G  K  S  S  Q  R  L  H  D  R  S  S  Y  A  Q  E  K  S  N  V  G  R  S  V  N  I  S  D  G  I  D  Q  S  V  Q  R  R  D  E  K  F  N  V  S  G  F  E  G  K  N  S  G  Q  T  M  :  K  D  P  A  M  Q  R  K  E  G  S  S  G  R  P  K  G  T  M  L  E  K  A  I  R  D  L  E  K  I  V  A  E   : L  R  P  P  N  M  E  V  Q  D  A  D  N  S  S  Q  A  I  K  R  R  L  P  L  E  I  K  Q  R  L  A  K  V  A  R  L  A  :  Q  A  S  H  G  K  I  S  N  E  L  I  S  R  L  M  S  I  V  G  H  L  I  Q  L  R  T  L  K </second_frame>
            <third_frame>   L  K  Y  Q  Q  Q  R  K  L  Q  I  P  K  I  C  R  S  Y  L  H  Q  H  H  C  V  A  I  L  Q  K  K  K  T  L  T  S  R  K  L  E  S  P  N  P  R  I  *  V  T  N  *  K  M  V  L  K  Y  L  E  N  H  L  R  G  Y  M  T  E  V  L  M  L  K  R  N  L  M  L  E  D  Q  *  I  F  L  T  E  *  T  S  L  F  S  A  V  M  R  S  L  M  S  V  A  L  R  E  R  T  Q  V  R  L  * :   K  I  L  L  C  R  E  R  K  D  R  V  V  D  Q  K  V  Q  C  L  R  R  P  S  G  I  W  R  R  S  L  Q  N  :  *  G  H  Q  I  W  R  F  R  M  L  I  I  H  L  R  L  S  K  G  G  Y  H  L  K  *  S  R  G  W  Q  K  L  P  D  W  R :   K  L  V  M  E  K  Y  P  M  S  *  L  V  V  *  *  V  L  S  A  T  *  Y  S  F  A  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47209" stop="46871"/>
                    <exon start="45200" stop="45101"/>
                    <exon start="44934" stop="44825"/>
                    <exon start="44714" stop="44628"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMKDPAMQRKEGSSGRPKGTMLEKAIRDLEKIVAELRPPNMEVQDADNSSQAIKRRLPLEIKQRLAKVARLAQASHGKISNELISRLMSIVGHLIQLRTLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="54683" PGL_stop="47320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54683" e_stop="54283"/>
            <exon e_start="50509" e_stop="50423"/>
            <exon e_start="50344" e_stop="50252"/>
            <exon e_start="50091" e_stop="50015"/>
            <exon e_start="47435" e_stop="47320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.917" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="54683" e_stop="54283" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54282" i_stop="50510" i_length="3773"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50509" e_stop="50423" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50422" i_stop="50345" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50344" e_stop="50252" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50251" i_stop="50092" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50091" e_stop="50015" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="50014" i_stop="47436" i_length="2579"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="47435" e_stop="47320" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54683" stop="54283"/>
              <exon start="50509" stop="50423"/>
              <exon start="50344" stop="50340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54682" stop="54283"/>
              <exon start="50509" stop="50423"/>
              <exon start="50344" stop="50282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54648" stop="54283"/>
              <exon start="50509" stop="50423"/>
              <exon start="50344" stop="50252"/>
              <exon start="50091" stop="50015"/>
              <exon start="47435" stop="47320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG : GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG : GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG : GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT : TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</gDNA_template>
            <first_frame> F  N  S  K  I  F  S  F  Q  F  G  T  K  F  S  S  S  L  G  F  R  I  S  V  S  L  S  F  P  C  L  H  L  L  N  L  I  H  R  N  P  N  F  V  Y  N  H  Q  W  T  A  A  S  L  V  E  N  R  *  G  G  R  P  R  P  M  K  L  Q  E  D  G  G  G  L  R  W  S  S  G  R  V  R  P  Q  L  C  R  G  R  S  F  S  R  T  L  I  S  L  M  L  M  L  S  V  L  V  Q  R  *  C  R  L  E  L  L  L  A  F  K  L  Q  C  R  I  L  L  S  R  L  D  *  L  R :   D  N  L  L  I  R  K  S  R  M  H  L  L  E  I  V  *  M  L  *  *  K  R  L  N  A  Y  M  W :   A  N  K  V  M  M  R  K  I  L  M  I  S  Q  M  T  M  N  M  T  L  K  I  L  S  *  M  I  L  S  W :   M  N  I  F  R  L  I  T  Q  Q  *  S  M  M  V  S  L  S  I  V  E  S  W  S  A   : L  S  Q  F  H  Q  R  I  S  N  Q  K  R  G  E  E  K  I  W  Q  K  A  M  L  G  M  M  M  D  T  I  Q  V  N  L  *  K  S  E </first_frame>
            <second_frame>  S  I  L  K  F  S  L  F  N  L  V  P  N  F  P  L  L  *  G  F  E  S  V  F  P  S  L  F  H  V  F  I  F  *  I  S  Y  I  V  T  L  I  S  F  T  I  T  N  G  R  R  L  H  W  W  R  T  G  R  E  G  V  H  V  L  *  S  C  R  R  T  A  E  V  Y  G  G  A  Q  A  G  *  D  H  N  C  V  V  E  E  A  S  Q  G  R  *  *  V  *  C  *  C  C  R  F  W  S  N  D  D  A  G  W  S  S  C  *  H  S  N  S  S  A  A  S  C  S  R  G  S  I  S  S   : G  T  T  C  *  *  G  S  Q  G  C  T  S  W  K  S  F  K  C  C  D  R  K  D  *  T  L  I  C   : G  Q  T  K  *  *  *  G  R  S  *  *  F  P  R  *  R  *  I  *  H  *  R  F  F  H  R  *  Y  *  A   : G  *  I  F  S  G  *  *  L  S  N  K  A  *  W  F  L  C  Q  S  W  K  V  G  A  H  :  *  A  S  F  T  K  E  S  A  T  K  K  E  E  K  K  R  S  G  K  K  P  C  W  G  *  *  W  T  Q  S  K  *  T  C  K  S  R   </second_frame>
            <third_frame>   Q  F  *  N  F  L  F  S  I  W  Y  Q  I  F  L  F  F  R  V  S  N  Q  C  F  P  L  F  S  M  S  S  S  S  K  S  H  T  S  *  P  *  F  R  L  Q  S  P  M  D  G  G  F  T  G  G  E  P  V  G  R  A  S  T  S  Y  E  A  A  G  G  R  R  R  F  T  V  E  L  R  P  G  E  T  T  I  V  S  W  K  K  L  L  K  D  A  N  K  S  N  V  N  V  V  G  S  G  P  T  M  M  P  V  G  A  P  A  S  I  Q  T  P  V  P  H  P  A  L  E  A  R  L  A  P  :  G  Q  P  A  D  K  E  V  K  D  A  P  P  G  N  R  L  N  A  V  I  E  K  I  E  R  L  Y  V  :  G  K  Q  S  D  D  E  E  D  L  N  D  F  P  D  D  D  E  Y  D  T  E  D  S  F  I  D  D  T  E  L  :  D  E  Y  F  Q  V  D  N  S  A  I  K  H  D  G  F  F  V  N  R  G  K  L  E  R  I :   E  P  V  S  P  K  N  Q  Q  P  K  K  R  R  R  K  D  L  A  K  S  H  V  G  D  D  D  G  H  N  P  S  K  P  V  K  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54558" stop="54283"/>
                    <exon start="50509" stop="50423"/>
                    <exon start="50344" stop="50252"/>
                    <exon start="50091" stop="50015"/>
                    <exon start="47435" stop="47321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRLQSPMDGGFTGGEPVGRASTSYEAAGGRRRFTVELRPGETTIVSWKKLLKDANKSNVNVVGSGPTMMPVGAPASIQTPVPHPALEARLAPGQPADKEVKDAPPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPVKVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="57153" PGL_stop="58407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57153" e_stop="58407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="57153" e_stop="58407" e_length="1255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57153" stop="57767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57188" stop="57556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57749" stop="58407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539195" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTATGAAACTATTGAAAGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</gDNA_template>
            <first_frame> G  K  A  A  F  E  I  F  N  K  F  G  D  L  G  C  A  P  N  A  D  T  Y  Y  F  T  I  E  A  L  S  R  R  S  I  Y  D  W  A  S  T  V  C  E  K  M  L  N  A  D  K  L  P  G  A  E  K  V  G  K  I  V  S  F  L  C  K  G  N  K  C  R  D  A  H  L  V  Y  L  S  A  K  E  K  N  I  N  L  P  V  S  S  I  K  L  L  I  S  S  L  C  R  K  D  E  G  V  K  L  A  M  E  V  L  D  E  F  P  K  E  E  R  K  H  A  I  K  S  F  S  H  V  I  N  G  L  C  R  A  N  D  V  T  G  E  K  Q  L  R  S  Y  C  S  E  D  I  D  E  A  K  N  L  L  L  K  M  I  D  A  G  P  P  P  G  N  A  V  F  N  T  V  I  N  A  L  S  K  K  G  E  M  G  E  A  M  K  L  L  K  V  M  E  G  R  G  L  K  P  D  V  Y  T  Y  S  V  I  M  S  V  I  Q  R  E  V  R  W  R  R  P  A  R  F  *  M  K  P  K  R  S  T  P  V  *  V  P  S  L  F  T  Q  L  F  G  A  I  S  S  S  N  S  M  T  R  L  W  N  Y  W  E  I  *  R  S  M  E  F  S  L  M  R  M  N  I  T  N  L  F  N  L  Y  A  L  R  L  *  I  G  Q  Q  Q  R  N  C  L  R  R  *  R  R  M  G  C  I  *  M  Q  S  Q  R  V  S  *  E  Q  L  R  S  *  N  R  K  K  *  E  Q  M  K  *  R  L  Q  H  S  R  Y  P  I  S  A  F  S  C  R  D  V  S  S  V  S  F  L  C  Y  G  L  R  *  *  Q  A  *  N  C  N  T  C  I  L  Y  D  E  Q  P  L  E  F  L  R  K  D  I  F  F  V  H  F  K  I  M  F  A  A  K  S  L  E  L  N  G  S  S  V  T  K  T  F  K  R  </first_frame>
            <second_frame>  E  R  L  H  L  R  S  S  I  S  L  G  I  *  D  V  H  Q  M  L  I  H  T  I  L  P  L  K  H  F  L  G  D  R  F  M  I  G  L  L  L  F  V  R  R  C  L  M  L  I  S  C  L  V  L  R  K  L  E  R  L  F  L  F  C  V  K  E  I  S  V  E  M  H  I  W  F  I  C  R  Q  R  R  K  I  L  I  C  L  Y  L  L  L  S  C  *  S  A  L  F  V  A  K  M  K  A  L  N  L  Q  W  R  C  W  M  S  S  P  K  K  S  G  S  M  P  L  S  H  S  H  M  S  S  M  G  C  V  G  Q  M  M  *  Q  G  K  S  S  C  V  P  I  A  V  K  T  L  T  R  P  K  T  C  S  *  K  *  *  M  Q  V  H  H  L  A  M  Q  S  L  I  Q  L  L  M  R  S  P  R  R  E  K  W  E  K  L  *  N  Y  *  K  *  W  R  V  E  V  *  N  L  M  C  T  L  I  V  *  S  *  V  L  Y  K  G  R  *  D  G  G  G  L  Q  D  F  E  *  S  Q  K  E  A  L  L  S  K  S  R  H  F  S  H  N  Y  S  G  L  F  Q  A  R  T  V  *  Q  G  S  G  T  I  G  R  Y  E  G  V  W  S  S  A  *  C  G  *  I  *  Q  I  Y  S  I  S  M  P  *  G  F  R  L  D  N  S  R  E  T  A  *  G  D  E  G  E  W  G  A  S  K  C  N  H  K  G  S  H  K  S  S  *  G  V  R  T  G  R  S  R  N  K  *  N  N  G  Y  S  I  V  G  T  L  S  L  P  L  A  V  G  M  Y  L  L  F  L  F  Y  V  M  V  *  D  N  S  R  L  K  T  V  T  P  A  F  C  M  M  N  N  H  *  N  S  *  E  R  I  F  F  L  F  I  L  K  *  C  L  L  P  N  L  L  S  *  M  E  V  P  *  L  R  L  S  K  G </second_frame>
            <third_frame>   K  G  C  I  *  D  L  Q  *  V  W  G  F  R  M  C  T  K  C  *  Y  I  L  F  Y  H  *  S  T  F  *  A  I  D  L  *  L  G  F  Y  C  L  *  E  D  A  *  C  *  *  V  A  W  C  *  E  S  W  K  D  C  F  F  S  V  *  R  K  *  V  *  R  C  T  S  G  L  F  V  G  K  G  E  K  Y  *  S  A  C  I  F  Y  *  V  V  D  Q  L  S  L  S  Q  R  *  R  R  *  T  C  N  G  G  V  G  *  V  P  Q  R  R  A  E  A  C  H  *  V  I  L  T  C  H  Q  W  A  V  *  G  K  *  C  N  R  G  K  A  A  A  F  L  L  Q  *  R  H  *  R  G  Q  K  L  A  L  K  N  D  R  C  R  S  T  T  W  Q  C  S  L  *  Y  S  Y  *  C  A  L  Q  E  G  R  N  G  R  S  Y  E  T  I  E  S  D  G  G  *  R  F  E  T  *  C  V  H  L  *  C  N  H  E  C  Y  T  K  G  G  E  M  E  E  A  C  K  I  L  N  E  A  K  K  K  H  S  C  L  S  P  V  T  F  H  T  I  I  R  G  Y  F  K  L  E  Q  Y  D  K  A  L  E  L  L  G  D  M  K  E  Y  G  V  Q  P  N  A  D  E  Y  N  K  F  I  Q  S  L  C  L  K  A  L  D  W  T  T  A  E  K  L  L  E  E  M  K  E  N  G  V  H  L  N  A  I  T  K  G  L  I  R  A  V  K  E  L  E  Q  E  E  V  G  T  N  E  I  T  A  T  A  *  *  V  P  Y  L  C  L  *  L  *  G  C  I  F  C  F  F  F  M  L  W  S  E  I  I  A  G  L  K  L  *  H  L  H  F  V  *  *  T  T  I  R  I  L  K  K  G  Y  F  F  C  S  F  *  N  N  V  C  C  Q  I  S  *  V  E  W  K  F  R  N  *  D  F  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57153" stop="57851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKAAFEIFNKFGDLGCAPNADTYYFTIEALSRRSIYDWASTVCEKMLNADKLPGAEKVGKIVSFLCKGNKCRDAHLVYLSAKEKNINLPVSSIKLLISSLCRKDEGVKLAMEVLDEFPKEERKHAIKSFSHVINGLCRANDVTGEKQLRSYCSEDIDEAKNLLLKMIDAGPPPGNAVFNTVINALSKKGEMGEAMKLLKVMEGRGLKPDVYTYSVIMSVIQREVRWRRPARF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="65921" PGL_stop="66393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65921" e_stop="66393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="65921" e_stop="66393" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65921" stop="66393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAAAAACAAAAACTTCATTTTCTTCTTCATAGCTAGAAAATCTCTATCAGATTCAGCAATGCGGCCTCCTAGCCGGGGCGTATTAATTTCTTTTTTCGTTATTACTCTTTTGTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTT</gDNA_template>
            <first_frame> V  K  K  Q  K  L  H  F  L  L  H  S  *  K  I  S  I  R  F  S  N  A  A  S  *  P  G  R  I  N  F  F  F  R  Y  Y  S  F  V  L  P  D  L  V  C  G  R  T  R  R  *  *  R  Y  R  I  R  *  H  *  G  *  C  *  *  V  E  F  *  K  L  K  D  S  R  C  L  Y  R  V  A  V  L  E  N  S  N  V  F  *  S  F  *  L  H  S  *  L  D  R  S  K  C  V  F  L  W  W  S  V  L  C  S  F  V  N  G  *  F  D  *  S  C  S  W  H  *  S  *  S  C  *  Y  C  W  F  I  S  C  R  T  W  S  S  Y  R  S  G  S  F  P  S  Q  L  E  S  F   </first_frame>
            <second_frame>  *  K  N  K  N  F  I  F  F  F  I  A  R  K  S  L  S  D  S  A  M  R  P  P  S  R  G  V  L  I  S  F  F  V  I  T  L  L  S  Y  Q  I  S  Y  V  V  G  Q  E  G  D  S  D  I  G  L  D  D  I  K  A  N  A  S  K  L  S  F  E  N  S  R  I  R  D  A  Y  I  A  L  Q  Y  W  K  T  A  M  F  S  D  P  F  N  F  T  A  N  W  T  G  P  N  V  C  S  Y  G  G  V  F  C  A  P  S  L  M  D  D  S  I  R  V  V  A  G  I  D  L  N  H  A  D  I  A  G  S  L  V  A  E  L  G  L  L  T  D  L  V  L  F  H  L  N  S  N  R  F  </second_frame>
            <third_frame>   E  K  T  K  T  S  F  S  S  S  *  L  E  N  L  Y  Q  I  Q  Q  C  G  L  L  A  G  A  Y  *  F  L  F  S  L  L  L  F  C  L  T  R  S  R  M  W  *  D  K  K  V  I  A  I  S  D  *  M  T  L  R  L  M  L  V  S  *  V  L  K  T  Q  G  F  A  M  L  I  S  R  C  S  I  G  K  Q  Q  C  F  L  I  L  L  T  S  Q  L  I  G  Q  V  Q  M  C  V  P  M  V  E  C  F  V  L  L  R  *  W  M  I  R  L  E  L  *  L  A  L  I  L  I  M  L  I  L  L  V  H  *  L  Q  N  L  V  F  L  Q  I  W  F  F  S  I  S  T  R  I  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65925" stop="66392"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNFIFFFIARKSLSDSAMRPPSRGVLISFFVITLLSYQISYVVGQEGDSDIGLDDIKANASKLSFENSRIRDAYIALQYWKTAMFSDPFNFTANWTGPNVCSYGGVFCAPSLMDDSIRVVAGIDLNHADIAGSLVAELGLLTDLVLFHLNSNRF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="67731" PGL_stop="66534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67731" e_stop="67573"/>
            <exon e_start="67506" e_stop="66534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.805"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.805">
            <gDNA_exon_boundary e_start="67731" e_stop="67573" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67572" i_stop="67507" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="67506" e_stop="66534" e_length="973"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67731" stop="67573"/>
              <exon start="67506" stop="67066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559585" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67172" stop="66534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67155" stop="66644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTG : GTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAA</gDNA_template>
            <first_frame> G  V  R  M  M  V  L  V  V  V  V  V  I  G  V  V  D  A  R  M  M  V  L  V  V  V  V  M  G  F  L  D  A  R  M  M  V  L  V  V  M  V  F  L  D  A  R  M  M  V  L  V  V  :  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  V  V  V  G  T  M  E  M  G  G  N  I  Q  V  R  V  E  E  V  N  D  E  L  Q  V  K  F  C  E  *  V  V  V  D  F  Y  V  D  R  L  G  T  F  C  K  V  L  V  E  E  E  E  L  I  *  V  A  A  E  I  A  C  Y  A  N  P  K  T  S  K  *  V  V  V  G  L  L  A  L  V  L  V  L  A  L  S  K  E  M  *  Q  K  G  Y  N  T  W  I  S  Y  N  H  T  V  L  H  H  P  K  S  I  L  *  Q  I  F  D  S  S  F  Q  R  Y  S  S  P  G  R  H  Q  I  *  S  Q  H  K  L  E  L  P  R  *  S  N  *  R  N  T  *  S  F  A  T  *  E  V  G  K  C  *  L  V  *  P  Q  *  A  C  C  E  P  H  S  V  P  P  H  S  S  F  C  S  Q  L  M  A  M  S  L  E  S  C  *  S  *  H  Q  T  R  L  T  C  S  T  I  Q  S  P  L  A  N  T  Q  *  G  Y  H  S  S  I  S  T  H  S  T  F  S  P  F  S  Q  Y  L  R  E  Y  T  L  Q  D  R  Y  *  Q  T  Q  E  P  K  Q  E  S  Y  P  S  S  P  G  C  Q  N  G  I  Y  C  H  S  K  T  T  H  P  N  L  Y  R  K  V  L  K  E  L  V  L  Q  </first_frame>
            <second_frame>  V  F  V  *  W  C  W  W  W  W  W  *  L  G  L  W  M  L  V  *  W  C  W  W  W  W  *  W  G  F  W  M  L  V  *  W  C  W  W  *  W  C  F  W  M  L  V  *  W  C  W  W  W :   W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W  W  W  W  G  R  W  R  W  V  V  I  Y  R  *  G  W  R  R  *  M  M  S  Y  R  *  N  F  V  S  R  W  W  W  T  S  M  L  I  G  W  G  L  F  V  R  C  W  W  R  K  R  S  *  F  R  W  R  R  R  S  L  V  M  R  T  R  R  L  P  S  R  W  W  W  A  S  W  L  W  F  W  F  W  L  C  R  R  R  C  S  K  R  A  I  T  L  G  F  P  T  I  I  R  F  C  I  I  R  R  A  F  F  S  R  S  L  I  L  L  S  N  D  T  V  L  L  A  V  T  R  S  S  R  S  T  N  W  S  F  P  G  E  V  I  E  G  I  R  K  V  L  Q  P  R  K  L  A  N  A  S  W  Y  N  P  S  K  L  V  V  S  H  I  Q  F  L  H  T  P  H  F  A  H  S  *  W  Q  *  A  L  N  L  V  E  A  N  I  K  H  G  *  L  V  Q  Q  S  N  L  H  W  Q  T  P  S  E  V  I  I  H  Q  Y  Q  L  I  Q  R  F  P  H  F  P  N  T  C  G  N  T  P  S  K  I  V  I  S  K  H  K  N  R  N  R  R  V  T  Q  V  L  R  D  A  K  T  E  S  I  V  I  Q  K  Q  R  I  Q  I  F  I  E  K  S  *  R  N  W  S  F  K </second_frame>
            <third_frame>   C  S  Y  D  G  V  G  G  G  G  G  D  W  G  C  G  C  S  Y  D  G  V  G  G  G  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  Y  D  G  V  G  G   : G  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T  G  G  G  G  D  D  G  D  G  W  *  Y  T  G  E  G  G  G  G  E  *  *  V  T  G  E  I  L  *  V  G  G  G  G  L  L  C  *  *  V  G  D  F  L  *  G  A  G  G  G  R  G  V  D  L  G  G  G  G  D  R  L  L  C  E  P  E  D  F  Q  V  G  G  G  G  P  L  G  F  G  F  G  F  G  F  V  E  G  D  V  A  K  G  L  *  H  L  D  F  L  Q  S  Y  G  F  A  S  S  E  E  H  S  L  A  D  L  *  F  F  F  P  T  I  Q  F  S  W  P  S  P  D  L  V  A  A  Q  T  G  A  S  P  V  K  *  L  K  E  Y  V  K  F  C  N  L  G  S  W  Q  M  L  A  G  I  T  P  V  S  L  L  *  A  T  F  S  S  S  T  L  L  I  L  L  T  V  D  G  N  E  P  *  I  L  L  K  L  T  S  N  T  V  N  L  F  N  N  P  I  S  I  G  K  H  P  V  R  L  S  F  I  N  I  N  S  F  N  V  F  P  I  F  P  I  L  A  G  I  H  P  P  R  S  L  L  A  N  T  R  T  E  T  G  E  L  P  K  F  S  G  M  P  K  R  N  L  L  S  F  K  N  N  A  S  K  S  L  S  K  S  P  E  G  T  G  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67229" stop="66837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRWRRRSLVMRTRRLPSRWWWASWLWFWFWLCRRRCSKRAITLGFPTIIRFCIIRRAFFSRSLILLSNDTVLLAVTRSSRSTNWSFPGEVIEGIRKVLQPRKLANASWYNPSKLVVSHIQFLHTPHFAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66820" stop="66536"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKLTSNTVNLFNNPISIGKHPVRLSFININSFNVFPIFPILAGIHPPRSLLANTRTETGELPKFSGMPKRNLLSFKNNASKSLSKSPEGTGPS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67729" stop="67573"/>
                    <exon start="67506" stop="67439"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSYDGVGGGGGDWGCGCSYDGVGGGGDGVFGCSYDGVGGDGVFGCSYDGVGGGGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="66546" PGL_stop="67304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66546" e_stop="67304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="66546" e_stop="67304" e_length="759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66546" stop="67006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66547" stop="67304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</gDNA_template>
            <first_frame> V  P  S  G  L  F  D  K  D  L  D  A  L  F  L  N  D  N  R  F  R  F  G  I  P  E  N  L  G  N  S  P  V  S  V  L  V  F  A  N  N  D  L  G  G  C  I  P  A  S  I  G  K  M  G  K  T  L  N  E  L  I  L  M  N  D  N  L  T  G  C  L  P  M  E  I  G  L  L  N  K  L  T  V  F  D  V  S  F  N  K  I  Q  G  S  L  P  S  T  V  S  K  M  R  S  V  E  E  L  N  V  A  H  N  K  L  T  G  V  I  P  A  S  I  C  Q  L  P  R  L  Q  N  F  T  Y  S  F  N  Y  F  T  G  E  A  P  V  C  A  A  T  R  S  G  D  G  Q  E  N  C  I  V  G  K  K  N  Q  R  S  A  K  E  C  S  S  D  D  A  K  P  Y  D  C  R  K  S  K  C  Y  S  P  F  A  T  S  P  S  T  K  P  K  P  K  P  K  P  R  G  P  P  P  P  T  W  K  S  S  G  S  H  N  K  R  S  P  P  P  P  K  S  T  P  L  P  P  P  A  P  Y  K  K  S  P  T  Y  Q  H  R  S  P  P  P  P  T </first_frame>
            <second_frame>  F  L  Q  D  F  S  I  K  I  W  M  R  C  F  *  M  T  I  D  S  V  L  A  S  R  R  T  W  V  T  L  L  F  R  F  L  C  L  L  I  T  I  L  E  G  V  F  P  Q  V  L  G  K  W  G  K  R  *  M  S  *  Y  *  *  M  I  T  S  L  G  V  C  Q  W  R  L  D  C  *  T  S  *  P  C  L  M  L  A  S  T  R  F  K  A  H  C  H  Q  L  *  A  K  *  G  V  W  R  N  *  M  W  L  T  T  S  L  L  G  L  Y  Q  L  A  F  A  N  F  L  G  C  K  T  L  R  I  P  S  I  T  S  P  G  K  L  Q  F  V  L  R  L  D  L  V  T  A  R  R  T  V  S  L  E  R  R  I  K  D  L  L  K  N  A  L  R  M  M  Q  N  R  M  I  V  G  N  P  S  V  I  A  L  L  L  H  L  L  R  Q  S  Q  N  Q  N  Q  S  Q  E  A  H  H  H  L  L  G  S  L  R  V  R  I  T  S  D  L  R  R  H  L  N  Q  L  L  F  L  H  Q  H  L  T  K  S  P  Q  P  I  N  I  E  V  H  H  H  L   </second_frame>
            <third_frame>   S  F  R  T  F  R  *  R  F  G  C  V  V  F  E  *  Q  *  I  P  F  W  H  P  G  E  L  G  *  L  S  C  F  G  S  C  V  C  *  *  R  S  W  R  V  Y  S  R  K  Y  W  E  N  G  E  N  V  E  *  V  D  I  D  E  *  *  P  H  W  V  F  A  N  G  D  W  I  V  E  Q  V  N  R  V  *  C  *  L  Q  Q  D  S  R  L  I  A  I  N  C  E  Q  N  E  E  C  G  G  T  E  C  G  S  Q  Q  A  Y  W  G  Y  T  S  *  H  L  P  T  S  *  V  A  K  L  Y  V  F  L  Q  L  L  H  R  G  S  S  S  L  C  C  D  *  I  W  *  R  P  G  E  L  Y  R  W  K  E  E  S  K  I  C  *  R  M  L  F  G  *  C  K  T  V  *  L  *  E  I  Q  V  L  *  P  F  C  Y  I  S  F  D  K  A  K  T  K  T  K  A  K  R  P  T  T  T  Y  L  E  V  F  G  F  A  *  Q  A  I  S  A  A  T  *  I  N  S  S  S  S  T  S  T  L  Q  K  V  P  N  L  S  T  *  K  S  T  T  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66546" stop="67304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPSGLFDKDLDALFLNDNRFRFGIPENLGNSPVSVLVFANNDLGGCIPASIGKMGKTLNELILMNDNLTGCLPMEIGLLNKLTVFDVSFNKIQGSLPSTVSKMRSVEELNVAHNKLTGVIPASICQLPRLQNFTYSFNYFTGEAPVCAATRSGDGQENCIVGKKNQRSAKECSSDDAKPYDCRKSKCYSPFATSPSTKPKPKPKPRGPPPPTWKSSGSHNKRSPPPPKSTPLPPPAPYKKSPTYQHRSPPPPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="67554" PGL_stop="68111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67554" e_stop="68111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="67554" e_stop="68111" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67554" stop="68111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67554" stop="68102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</gDNA_template>
            <first_frame> E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  P  P  T  P  S  Y  E  H  P  Q  P  Q  S  P  P  P  P  P  T  P  S  Y  E  H  P  K  T  P  S  H  P  T  P  P  T  P  P  C  N  E  P  P  P  P  P  P  N  S  H  W  E  P  K  P  S  P  P  Y  T  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  Y  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  S  S  P  P  P  P  P  P  F  Y  E  N  I  P  L  P  P  V  I  G  V  S  Y  A  S  P  P  P  P  V  I  P  Y  Y  *  T  R  V  I  N  *  P  L  I  F  H  Y  Q  K  K  K  N  S  F  F  F  M  N  Y </first_frame>
            <second_frame>  N  T  Q  K  P  H  H  H  Q  H  H  H  T  S  I  Q  K  H  H  H  H  Q  H  H  H  T  S  I  Q  K  P  H  H  H  H  H  Q  H  H  H  T  S  I  H  N  P  N  H  H  H  H  H  Q  H  H  H  T  N  T  Q  K  L  H  H  T  Q  P  H  L  P  H  L  V  T  N  H  H  L  H  L  L  I  H  I  G  N  Q  N  H  H  H  H  T  P  T  H  H  H  H  L  H  H  H  L  L  L  L  P  L  T  T  T  H  H  H  R  H  H  H  H  H  L  P  R  P  L  T  L  L  R  H  H  H  H  H  F  T  K  I  F  L  S  H  R  *  S  E  S  P  T  H  L  H  H  H  Q  S  F  H  I  T  E  Q  G  L  S  I  S  L  *  F  S  I  I  K  K  K  R  I  H  F  F  L  *  I   </second_frame>
            <third_frame>   T  P  K  N  P  I  T  T  N  T  I  I  R  A  S  K  N  T  I  T  T  N  T  I  I  R  A  S  K  N  P  I  T  T  T  T  N  T  I  I  R  A  S  T  T  P  I  T  T  T  T  T  N  T  I  I  R  T  P  K  N  S  I  T  P  N  P  T  Y  P  T  L  *  R  T  T  T  S  T  S  *  F  T  L  G  T  K  T  I  T  T  I  H  L  L  I  T  T  T  S  I  T  I  S  S  S  S  H  L  L  L  L  I  T  T  A  T  I  T  I  T  S  P  A  H  L  L  F  S  A  T  T  T  T  I  L  R  K  Y  S  S  P  T  G  N  R  S  L  L  R  I  S  T  T  T  S  H  S  I  L  L  N  K  G  Y  Q  L  A  F  D  F  P  L  S  K  K  K  E  F  I  F  F  Y  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67554" stop="68039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHPKTPSPPTPSYEHPKTPSPPTPSYEHPKTPSPPPPTPSYEHPQPQSPPPPPTPSYEHPKTPSHPTPPTPPCNEPPPPPPNSHWEPKPSPPYTYSSPPPPSPSPPPPTYYYSSPPPPSPSPPPPTYSSPPPPPPFYENIPLPPVIGVSYASPPPPVIPYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67555" stop="67989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTQKPHHHQHHHTSIQKHHHHQHHHTSIQKPHHHHHQHHHTSIHNPNHHHHHQHHHTNTQKLHHTQPHLPHLVTNHHLHLLIHIGNQNHHHHTPTHHHHLHHHLLLLPLTTTHHHRHHHHHLPRPLTLLRHHHHHFTKIFLSHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="74878" PGL_stop="75397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74878" e_stop="75397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="74878" e_stop="75397" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74878" stop="75242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74886" stop="75391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74892" stop="75177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74899" stop="75397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTGACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGATAGAGAC</gDNA_template>
            <first_frame> K  N  *  L  D  S  L  S  V  *  T  S  L  Q  K  P  *  F  Q  S  S  L  R  Y  R  V  P  S  K  L  T  S  T  L  A  E  H  R  A  I  G  Q  P  A  E  S  I  I  A  N  G  L  R  R  V  R  L  S  G  E  D  C  G  R  D  Q  R  Y  F  Y  E  E  Q  R  Q  R  Q  *  Q  Q  R  R  E  G  E  E  R  E  R  L  S  S  K  G  E  R  W  K  *  G  I  R  R  R  R  Q  *  R  A  P  E  Q  Q  K  V  S  R  G  R  R  K  H  Q  R  E  G  *  G  E  R  *  G  K  V  I  E  A  S  E  *  G  T  G  I  *  E  G  Q  R  K  K  L  K  R  P  *  P  *  Q  R  E  K  G  K  G  E  R  E  R  E  G  *  R  </first_frame>
            <second_frame>  K  T  D  L  I  A  S  Q  F  E  P  V  C  K  N  P  N  F  R  V  R  Y  G  I  G  F  R  Q  S  *  P  V  H  W  R  N  T  E  P  S  A  N  R  Q  R  A  S  S  Q  M  D  F  D  E  Y  D  Y  L  E  K  T  V  E  E  T  N  G  T  S  T  K  S  K  D  K  D  N  N  S  S  A  E  K  E  K  S  E  K  G  Y  R  R  R  E  R  D  G  S  E  E  Y  A  D  D  D  N  R  E  R  R  S  S  K  K  S  R  G  D  G  E  S  I  R  E  K  D  K  E  R  D  R  E  R  S  S  R  H  R  S  R  E  R  E  S  E  R  D  K  E  R  S  S  K  D  R  D  R  D  R  E  K  R  E  K  E  K  E  K  E  R  D  R  D </second_frame>
            <third_frame>   K  L  T  *  *  P  L  S  L  N  Q  F  A  K  T  L  I  S  E  F  A  T  V  *  G  S  V  K  A  N  Q  Y  T  G  G  T  P  S  H  R  P  T  G  R  E  H  H  R  K  W  T  S  T  S  T  I  I  W  R  R  L  W  K  R  P  T  V  L  L  R  R  A  K  T  K  T  I  T  A  A  P  R  R  R  R  A  R  K  A  I  V  E  G  R  E  M  E  V  R  N  T  P  T  T  T  I  E  S  A  G  A  A  K  S  L  A  G  T  A  K  A  S  E  R  R  I  R  R  E  I  G  K  G  H  R  G  I  G  V  G  N  G  N  L  R  G  T  K  K  E  A  Q  K  T  V  T  V  T  E  R  K  G  K  R  R  K  R  K  R  G  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74952" stop="75395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSVKANQYTGGTPSHRPTGREHHRKWTSTSTIIWRRLWKRPTVLLRRAKTKTITAAPRRRRARKAIVEGREMEVRNTPTTTIESAGAAKSLAGTAKASERRIRREIGKGHRGIGVGNGNLRGTKKEAQKTVTVTERKGKRRKRKRGIE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74969" stop="75397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVHWRNTEPSANRQRASSQMDFDEYDYLEKTVEETNGTSTKSKDKDNNSSAEKEKSEKGYRRRERDGSEEYADDDNRERRSSKKSRGDGESIREKDKERDRERSSRHRSRERESERDKERSSKDRDRDREKREKEKEKERDRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="75389" PGL_stop="74995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75389" e_stop="74995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="75389" e_stop="74995" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75389" stop="74995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75389" stop="75141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTCTCTTTCTCTTTCTCCTTTTCCCTTTTCTCTCTGTCACGGTCACGGTCTTTTGAGCTTCTTTCTTTGTCCCTCTCAGATTCCCGTTCCCTACTCCGATGCCTCGATGACCTTTCCCTATCTCTCTCCTTATCCTTCTCTCTGATGCTTTCGCCGTCCCCGCGAGACTTTTTGCTGCTCCGGCGCTCTCTATTGTCGTCGTCGGCGTATTCCTCACTTCCATCTCTCTCCCTTCGACGATAGCCTTTCTCGCTCTTCTCCTTCTCGGCGCTGCTGTTATTGTCTTTGTCTTTGCTCTTCGTAGAAGTACCGTTGGTCTCTTCCACAGTCTTCTCCAGATAATCGTACTCGTCGAAGTCCATTTGCGATGATGCTCTCTGCCGGTTGGCCGAT</gDNA_template>
            <first_frame> P  S  L  S  L  S  P  F  P  F  S  L  C  H  G  H  G  L  L  S  F  F  L  C  P  S  Q  I  P  V  P  Y  S  D  A  S  M  T  F  P  Y  L  S  P  Y  P  S  L  *  C  F  R  R  P  R  E  T  F  C  C  S  G  A  L  Y  C  R  R  R  R  I  P  H  F  H  L  S  P  F  D  D  S  L  S  R  S  S  P  S  R  R  C  C  Y  C  L  C  L  C  S  S  *  K  Y  R  W  S  L  P  Q  S  S  P  D  N  R  T  R  R  S  P  F  A  M  M  L  S  A  G  W  P   </first_frame>
            <second_frame>  P  L  F  L  F  L  L  F  P  F  L  S  V  T  V  T  V  F  *  A  S  F  F  V  P  L  R  F  P  F  P  T  P  M  P  R  *  P  F  P  I  S  L  L  I  L  L  S  D  A  F  A  V  P  A  R  L  F  A  A  P  A  L  S  I  V  V  V  G  V  F  L  T  S  I  S  L  P  S  T  I  A  F  L  A  L  L  L  L  G  A  A  V  I  V  F  V  F  A  L  R  R  S  T  V  G  L  F  H  S  L  L  Q  I  I  V  L  V  E  V  H  L  R  *  C  S  L  P  V  G  R  </second_frame>
            <third_frame>   L  S  F  S  F  S  F  S  L  F  S  L  S  R  S  R  S  F  E  L  L  S  L  S  L  S  D  S  R  S  L  L  R  C  L  D  D  L  S  L  S  L  S  L  S  F  S  L  M  L  S  P  S  P  R  D  F  L  L  L  R  R  S  L  L  S  S  S  A  Y  S  S  L  P  S  L  S  L  R  R  *  P  F  S  L  F  S  F  S  A  L  L  L  L  S  L  S  L  L  F  V  E  V  P  L  V  S  S  T  V  F  S  R  *  S  Y  S  S  K  S  I  C  D  D  A  L  C  R  L  A  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75277" stop="75017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPISLLILLSDAFAVPARLFAAPALSIVVVGVFLTSISLPSTIAFLALLLLGAAVIVFVFALRRSTVGLFHSLLQIIVLVEVHLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75387" stop="75145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSFSFSFSLFSLSRSRSFELLSLSLSDSRSLLRCLDDLSLSLSLSFSLMLSPSPRDFLLLRRSLLSSSAYSSLPSLSLRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="75515" PGL_stop="77102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75515" e_stop="75588"/>
            <exon e_start="76117" e_stop="76214"/>
            <exon e_start="76353" e_stop="77102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75515" e_stop="75588" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="75589" i_stop="76116" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76117" e_stop="76214" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76215" i_stop="76352" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="76353" e_stop="77102" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75515" stop="75588"/>
              <exon start="76117" stop="76214"/>
              <exon start="76353" stop="76618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76618" stop="77102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG : ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG : GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGCTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</gDNA_template>
            <first_frame> S  R  I  E  R  E  R  E  K  E  M  L  R  D  S  E  R  D  F  E  S  R  D  S  R :   W  I  V  S  T  S  *  W  A  N  N  A  E  T  L  Q  G  S  I  E  E  V  A  Y  S  H  I  Y  *  V  *  *   : G  W  Q  S  I  W  C  E  A  V  S  V  F  Q  P  F  L  L  F  E  D  E  N  T  L  T  L  Y  V  I  L  F  L  *  K  Q  G  K  V  S  K  F  W  C  W  A  A  Y  N  V  T  T  H  T  A  F  I  F  L  T  *  R  C  F  E  S  S  N  Y  L  L  E  F  A  L  F  V  L  V  F  F  F  S  G  N  V  A  F  C  W  W  L  D  F  Y  L  L  P  V  *  I  Y  K  M  K  L  I  G  G  H  *  A  F  M  R  R  S  C  Y  I  H  L  N  K  *  I  N  E  V  C  I  F  Y  *  P  I  G  L  S  K  T  L  E  S  C  *  L  F  P  H  L  S  P  K  G  L  P  *  *  S  I  L  L  Q  *  L  L  H  L  I  E  K  R  *  N  L  A  Q  Q  G  R  L  *  R  M  M  I  P  H  V  I  M  *  F  V  E  C  P  C  I  Y  A  S  L  V  E  L  *  C  L  *  *  L  I  T  F  N  V  A  G  A  T  *  S  T  *  N  E  N  P  L  P  T  M  C  N  L  N  F  T  T  R  A  S  Y  F  F  V  L  Y  </first_frame>
            <second_frame>  R  E  S  S  E  S  E  R  K  R  C  *  E  T  A  S  V  T  L  N  H  G  T  A   : D  G  L  F  P  H  L  N  G  L  T  M  R  K  P  F  K  A  R  L  K  K  W  L  I  P  T  Y  I  E  Y  D  K  :  V  G  K  A  Y  G  V  R  L  Y  Q  F  F  N  L  F  F  C  S  K  T  K  I  H  *  P  Y  M  S  F  F  F  C  E  S  R  E  K  S  Q  N  F  G  A  G  Q  R  I  M  S  Q  H  I  L  H  S  Y  S  *  L  E  D  A  S  K  V  Q  I  I  F  *  N  L  L  Y  L  Y  L  F  S  F  S  L  G  M  L  R  F  A  G  G  W  I  S  I  C  F  L  F  R  Y  I  R  *  N  S  L  G  V  I  E  H  L  *  G  D  R  A  I  F  T  *  T  S  R  *  M  K  F  A  F  S  T  S  L  L  V  Y  P  K  L  *  N  L  V  D  F  F  H  I  C  L  Q  R  A  C  L  D  D  L  S  C  C  S  S  Y  S  I  *  L  R  R  G  E  I  *  H  S  K  G  G  F  R  G  *  *  F  L  M  S  *  C  N  L  *  N  V  H  V  F  M  Q  V  W  L  S  F  D  V  Y  S  S  *  L  P  S  M  *  Q  V  L  H  K  V  L  E  M  K  I  H  S  L  L  C  A  T  *  I  L  Q  P  E  P  H  I  F  S  F  F  T </second_frame>
            <third_frame>   E  N  R  A  R  A  R  E  R  D  V  E  R  Q  R  A  *  L  *  I  T  G  Q  Q  :  M  D  C  F  H  I  L  M  G  *  Q  C  G  N  P  S  R  L  D  *  R  S  G  L  F  P  H  I  L  S  M  I  R :   L  A  K  H  M  V  *  G  C  I  S  F  S  T  F  S  S  V  R  R  R  K  Y  I  N  P  I  C  H  S  F  F  V  K  A  G  K  S  L  K  I  L  V  L  G  S  V  *  C  H  N  T  Y  C  I  H  I  L  N  L  K  M  L  R  K  F  K  L  S  S  R  I  C  S  I  C  T  C  F  L  F  L  W  E  C  C  V  L  L  V  V  G  F  L  F  A  S  C  L  D  I  *  D  E  T  H  W  G  S  L  S  I  Y  E  E  I  V  L  Y  S  P  K  Q  V  D  K  *  S  L  H  F  L  L  A  Y  W  S  I  Q  N  F  R  I  L  L  T  F  S  T  F  V  S  K  G  L  A  L  M  I  Y  P  A  A  V  A  T  P  S  N  *  E  E  V  K  F  S  T  A  R  E  A  L  E  D  D  D  S  S  C  H  N  V  I  C  R  M  S  M  Y  L  C  K  F  G  *  A  L  M  F  I  V  V  D  Y  L  Q  C  S  R  C  Y  I  K  Y  L  K  *  K  S  T  P  Y  Y  V  Q  L  K  F  Y  N  Q  S  L  I  F  F  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75552" stop="75588"/>
                    <exon start="76117" stop="76214"/>
                    <exon start="76353" stop="76427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETASVTLNHGTADGLFPHLNGLTMRKPFKARLKKWLIPTYIEYDKVGKAYGVRLYQFFNLFFCSKTKIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="77135" PGL_stop="84347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77135" e_stop="77355"/>
            <exon e_start="77484" e_stop="77540"/>
            <exon e_start="78010" e_stop="78065"/>
            <exon e_start="79477" e_stop="79705"/>
            <exon e_start="80147" e_stop="80233"/>
            <exon e_start="80325" e_stop="80399"/>
            <exon e_start="80516" e_stop="80599"/>
            <exon e_start="82612" e_stop="82676"/>
            <exon e_start="82797" e_stop="82986"/>
            <exon e_start="83107" e_stop="83195"/>
            <exon e_start="83380" e_stop="83494"/>
            <exon e_start="84054" e_stop="84347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.900"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.987"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.947"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="77135" e_stop="77355" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77356" i_stop="77483" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="77484" e_stop="77540" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77541" i_stop="78009" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78010" e_stop="78065" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="79477" e_stop="79705" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80147" e_stop="80233" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80325" e_stop="80399" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80516" e_stop="80599" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82612" e_stop="82676" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.360" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120"/>
          </intron>
          <exon e_serial="9" e_score="0.947">
            <gDNA_exon_boundary e_start="82797" e_stop="82986" e_length="190"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83107" e_stop="83195" e_length="89"/>
          </exon>
          <intron i_serial="10" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="83380" e_stop="83494" e_length="115"/>
          </exon>
          <intron i_serial="11" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="84054" e_stop="84347" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77135" stop="77355"/>
              <exon start="77484" stop="77540"/>
              <exon start="78010" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77175" stop="77355"/>
              <exon start="77484" stop="77540"/>
              <exon start="78010" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78019" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79597" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82676"/>
              <exon start="82797" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82888" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279822" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83111" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83112" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83155" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217779" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83458" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83459" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218279" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTTCAATATGTTCTATAGTGTGACATAAGAAAGTGAAGGGTCATGAGCTCTAGCTGGTTAATAAATTCATGTTTAAAACAATTTTTTGCTATGATCTATGCCATACAGATTCTCATCATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAG : ATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTTTTCTCACAAGCAGGAAAG : GTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG : GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG : ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA : TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG : GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG : GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG : TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</gDNA_template>
            <first_frame> L  L  Q  Y  V  L  *  C  D  I  R  K  *  R  V  M  S  S  S  W  L  I  N  S  C  L  K  Q  F  F  A  M  I  Y  A  I  Q  I  L  I  M  V  *  V  I  Y  T  G  D  S  R  R  R  K  K  K  *  N  Q  K  L  I  Q  K  G  T  R  E  L  F  L  L  T  R :   C  P  *  R  R  L  K  G  M  C  M  S  F  S  H  K  Q  E  R :   *  G  M  C  G  *  S  W  T  G  I  Q  G  D  L  K  E  L   : G  T  L  S  F  M  M  L  C  P  C  Q  W  L  L  L  Y  L  V  A  C  S  L  A  N  Q  *  W  *  N  L  L  K  L  K  R  T  L  F  S  Q  L  R  L  V  V  D  Q  G  W  R  G  Q  M  L  P  Q  K  E  N  F  M  L  E  I  F  T  L  T  *  Q  N  C  S  L  D  R :   F  L  K  L  L  G  Q  W  S  L  F  N  Y  L  Q  I  L  K  Q  D  I  A  K  D  L  G  L  S  N :   L  L  N  L  N  M  L  R  R  L  K  V  *  M  V  S  L  R  L  R  V  G  P  S  R :   F  H  P  L  L  N  M  L  E  Y  K  M  L  E  L  K  L  Q  T  L  M  M  M  K  G  V  A  W :   H  *  M  L  S  Q  G  P  C  L  W  Q  N  W  T  A  V  V  L  L  Q   : V  L  R  V  H  *  E  F  L  H  L  M  V  Q  L  S  Q  Q  *  A  C  Q  W  V  E  Q  Q  L  F  R  I  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W  E  P  S  K  M  S  E  D  C  *  F  V  Y  C  N  C  N  S  A  A  D  F  V  I  *  V  G  I  P  K  T  R  *  S  S  L  Y  P  D  R  *  G  Y  R  L  C  N  F  D  T  V  F  S  F  *  S  T  V  T  Y  G  I  H  L  Y  F  F  L  A  T  *  L  M  R  F  K  C  V  C  Y  W  K   </first_frame>
            <second_frame>  C  F  N  M  F  Y  S  V  T  *  E  S  E  G  S  *  A  L  A  G  *  *  I  H  V  *  N  N  F  L  L  *  S  M  P  Y  R  F  S  S  W  S  E  S  F  I  Q  E  I  Q  G  E  E  R  K  N  R  T  R  S  *  S  R  K  G  P  E  N  C  F  C  L  P   : D  A  L  E  G  D  *  K  G  C  V  *  V  F  L  T  S  R  K   : G  E  G  C  A  V  N  H  G  P  E  F  K  A  I  *  R  S  W  :  V  H  *  V  L  *  C  Y  V  R  A  N  G  Y  C  F  I  W  S  L  A  L  W  P  T  S  N  G  K  T  F  *  S  *  K  E  P  C  S  V  N  C  V  W  W  W  I  R  V  G  G  A  K  C  C  L  R  K  K  T  L  C  W  K  S  S  L  *  H  D  R  I  A  A  *  T   : D  F  *  S  F  W  A  S  G  A  C  S  I  T  Y  R  S  *  N  R  T  L  Q  R  I  W  V  C  P   : I  C  S  T  *  T  C  *  G  G  S  K  F  E  W  *  A  *  D  C  G  S  D  H  Q   : G  F  I  R  Y  *  T  C  W  S  T  R  C  W  S  *  N  C  R  L  *  *  *  *  R  G  W  P   : G  I  E  C  S  V  K  G  H  A  Y  G  K  I  G  P  Q  W  C  C  F  R  :  C  C  G  Y  T  R  S  S  C  T  *  W  C  S  S  A  S  N  E  H  A  N  G  W  S  N  S  F  S  E  Y  A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D  G  S  H  L  K  C  L  K  T  A  D  L  F  I  V  I  A  I  V  Q  L  I  L  *  F  K  L  G  Y  Q  R  L  V  K  V  P  Y  T  R  T  D  E  V  I  G  C  V  I  L  T  Q  Y  S  H  F  S  Q  L  S  L  M  E  F  I  C  I  F  F  W  Q  L  D  *  *  D  L  S  V  F  A  I  G  K  </second_frame>
            <third_frame>   A  S  I  C  S  I  V  *  H  K  K  V  K  G  H  E  L  *  L  V  N  K  F  M  F  K  T  I  F  C  Y  D  L  C  H  T  D  S  H  H  G  L  S  H  L  Y  R  R  F  K  E  K  K  E  K  I  E  P  E  A  D  P  E  R  D  Q  R  T  V  F  A  Y  Q  :  M  P  L  K  A  T  E  R  D  V  Y  E  F  F  S  Q  A  G  K  :  V  R  D  V  R  L  I  M  D  R  N  S  R  R  S  K  G  V  G :   Y  I  E  F  Y  D  A  M  S  V  P  M  A  I  A  L  S  G  R  L  L  F  G  Q  P  V  M  V  K  P  S  E  A  E  K  N  L  V  Q  S  T  A  S  G  G  G  S  G  L  A  G  P  N  A  A  S  E  R  K  L  Y  V  G  N  L  H  F  N  M  T  E  L  Q  L  R  Q  :  I  F  E  A  F  G  P  V  E  L  V  Q  L  P  T  D  P  E  T  G  H  C  K  G  F  G  F  V  Q  :  F  A  Q  L  E  H  A  K  A  A  Q  S  L  N  G  K  L  E  I  A  G  R  T  I  K  :  V  S  S  V  T  E  H  V  G  V  Q  D  A  G  A  K  T  A  D  F  D  D  D  E  G  G  G  L  :  A  L  N  A  Q  S  R  A  M  L  M  A  K  L  D  R  S  G  V  A  S  G :   V  A  G  T  L  G  V  P  A  L  N  G  A  A  Q  P  A  M  S  M  P  M  G  G  A  T  A  F  Q  N  M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  G  A  I  *  N  V  *  R  L  L  I  C  L  L  *  L  Q  *  C  S  *  F  C  N  L  S  W  D  T  K  D  S  L  K  F  L  I  P  G  Q  M  R  L  *  V  V  *  F  *  H  S  I  L  I  L  V  N  C  H  L  W  N  S  F  V  F  F  F  G  N  L  I  D  E  I  *  V  C  L  L  L  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77191" stop="77355"/>
                    <exon start="77484" stop="77540"/>
                    <exon start="78010" stop="78065"/>
                    <exon start="79477" stop="79705"/>
                    <exon start="80147" stop="80233"/>
                    <exon start="80325" stop="80399"/>
                    <exon start="80516" stop="80599"/>
                    <exon start="82612" stop="82676"/>
                    <exon start="82797" stop="82986"/>
                    <exon start="83107" stop="83195"/>
                    <exon start="83380" stop="83494"/>
                    <exon start="84054" stop="84095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVNKFMFKTIFCYDLCHTDSHHGLSHLYRRFKEKKEKIEPEADPERDQRTVFAYQMPLKATERDVYEFFSQAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGRLLFGQPVMVKPSEAEKNLVQSTASGGGSGLAGPNAASERKLYVGNLHFNMTELQLRQIFEAFGPVELVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTEHVGVQDAGAKTADFDDDEGGGLALNAQSRAMLMAKLDRSGVASGVAGTLGVPALNGAAQPAMSMPMGGATAFQNMLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77638" e_stop="78065"/>
            <exon e_start="79477" e_stop="79705"/>
            <exon e_start="80147" e_stop="80233"/>
            <exon e_start="80325" e_stop="80399"/>
            <exon e_start="80516" e_stop="80599"/>
            <exon e_start="82612" e_stop="82676"/>
            <exon e_start="82797" e_stop="82986"/>
            <exon e_start="83107" e_stop="83195"/>
            <exon e_start="83380" e_stop="83494"/>
            <exon e_start="84054" e_stop="84347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.987"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.947"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="77638" e_stop="78065" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="79477" e_stop="79705" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80147" e_stop="80233" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80325" e_stop="80399" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80516" e_stop="80599" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82612" e_stop="82676" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.360" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120"/>
          </intron>
          <exon e_serial="7" e_score="0.947">
            <gDNA_exon_boundary e_start="82797" e_stop="82986" e_length="190"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83107" e_stop="83195" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83380" e_stop="83494" e_length="115"/>
          </exon>
          <intron i_serial="9" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="84054" e_stop="84347" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77638" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78019" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79597" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82676"/>
              <exon start="82797" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82888" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279822" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83111" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83112" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83155" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217779" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83458" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83459" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218279" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAATTTCATTTTCTTGTGGTCCTCTAGAATTGATATGATACTTAATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCATAAACTATTAGTGCATGCAGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCAGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAATGATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATTGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGGTGATTTCTATATTTTGACACTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG : GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG : ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA : TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG : GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG : GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG : TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</gDNA_template>
            <first_frame> P  R  I  S  F  S  C  G  P  L  E  L  I  *  Y  L  M  F  R  T  Q  K  M  I  C  V  L  R  L  T  L  L  P  *  T  I  S  A  C  S  M  H  L  L  A  V  A  V  T  A  S  L  P  S  V  S  G  S  L  I  T  F  S  C  L  K  I  L  Y  L  I  G  *  A  M  I  V  *  S  G  L  T  D  D  F  M  H  D  L  L  Q  V  L  W  C  I  L  Y  E  C  T  K  R  P  S  K  Y  S  L  S  W  *  F  L  Y  F  D  T  H  F  I  H  F  *  V  R  D  V  R  L  I  M  D  R  N  S  R  R  S  K  G  V  G :   Y  I  E  F  Y  D  A  M  S  V  P  M  A  I  A  L  S  G  R  L  L  F  G  Q  P  V  M  V  K  P  S  E  A  E  K  N  L  V  Q  S  T  A  S  G  G  G  S  G  L  A  G  P  N  A  A  S  E  R  K  L  Y  V  G  N  L  H  F  N  M  T  E  L  Q  L  R  Q  :  I  F  E  A  F  G  P  V  E  L  V  Q  L  P  T  D  P  E  T  G  H  C  K  G  F  G  F  V  Q  :  F  A  Q  L  E  H  A  K  A  A  Q  S  L  N  G  K  L  E  I  A  G  R  T  I  K  :  V  S  S  V  T  E  H  V  G  V  Q  D  A  G  A  K  T  A  D  F  D  D  D  E  G  G  G  L  :  A  L  N  A  Q  S  R  A  M  L  M  A  K  L  D  R  S  G  V  A  S  G :   V  A  G  T  L  G  V  P  A  L  N  G  A  A  Q  P  A  M  S  M  P  M  G  G  A  T  A  F  Q  N  M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  G  A  I  *  N  V  *  R  L  L  I  C  L  L  *  L  Q  *  C  S  *  F  C  N  L  S  W  D  T  K  D  S  L  K  F  L  I  P  G  Q  M  R  L  *  V  V  *  F  *  H  S  I  L  I  L  V  N  C  H  L  W  N  S  F  V  F  F  F  G  N  L  I  D  E  I  *  V  C  L  L  L  E  N </first_frame>
            <second_frame>  L  E  F  H  F  L  V  V  L  *  N  *  Y  D  T  *  C  L  G  P  K  K  *  F  V  F  F  A  *  P  F  F  H  K  L  L  V  H  A  V  C  I  S  L  L  L  Q  *  L  L  L  C  L  Q  Y  Q  V  A  *  L  H  S  H  V  S  R  F  Y  T  *  L  D  E  Q  *  *  S  D  Q  V  *  L  M  I  L  C  M  T  Y  C  R  S  C  G  V  Y  C  M  S  V  P  K  G  P  L  N  T  V  Y  P  G  D  F  Y  I  L  T  L  I  L  Y  I  S  R  *  G  M  C  G  *  S  W  T  G  I  Q  G  D  L  K  E  L   : G  T  L  S  F  M  M  L  C  P  C  Q  W  L  L  L  Y  L  V  A  C  S  L  A  N  Q  *  W  *  N  L  L  K  L  K  R  T  L  F  S  Q  L  R  L  V  V  D  Q  G  W  R  G  Q  M  L  P  Q  K  E  N  F  M  L  E  I  F  T  L  T  *  Q  N  C  S  L  D  R :   F  L  K  L  L  G  Q  W  S  L  F  N  Y  L  Q  I  L  K  Q  D  I  A  K  D  L  G  L  S  N :   L  L  N  L  N  M  L  R  R  L  K  V  *  M  V  S  L  R  L  R  V  G  P  S  R :   F  H  P  L  L  N  M  L  E  Y  K  M  L  E  L  K  L  Q  T  L  M  M  M  K  G  V  A  W :   H  *  M  L  S  Q  G  P  C  L  W  Q  N  W  T  A  V  V  L  L  Q   : V  L  R  V  H  *  E  F  L  H  L  M  V  Q  L  S  Q  Q  *  A  C  Q  W  V  E  Q  Q  L  F  R  I  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W  E  P  S  K  M  S  E  D  C  *  F  V  Y  C  N  C  N  S  A  A  D  F  V  I  *  V  G  I  P  K  T  R  *  S  S  L  Y  P  D  R  *  G  Y  R  L  C  N  F  D  T  V  F  S  F  *  S  T  V  T  Y  G  I  H  L  Y  F  F  L  A  T  *  L  M  R  F  K  C  V  C  Y  W  K   </second_frame>
            <third_frame>   *  N  F  I  F  L  W  S  S  R  I  D  M  I  L  N  V  *  D  P  K  N  D  L  C  S  S  L  D  P  S  S  I  N  Y  *  C  M  Q  Y  A  S  P  C  C  C  S  N  C  F  S  A  F  S  I  R  *  L  N  Y  I  L  M  S  Q  D  S  I  L  D  W  M  S  N  D  S  L  I  R  F  N  *  *  F  Y  A  *  P  I  A  G  L  V  V  Y  I  V  *  V  Y  Q  K  A  L  *  I  Q  F  I  L  V  I  S  I  F  *  H  S  F  Y  T  F  L  G  E  G  C  A  V  N  H  G  P  E  F  K  A  I  *  R  S  W  :  V  H  *  V  L  *  C  Y  V  R  A  N  G  Y  C  F  I  W  S  L  A  L  W  P  T  S  N  G  K  T  F  *  S  *  K  E  P  C  S  V  N  C  V  W  W  W  I  R  V  G  G  A  K  C  C  L  R  K  K  T  L  C  W  K  S  S  L  *  H  D  R  I  A  A  *  T   : D  F  *  S  F  W  A  S  G  A  C  S  I  T  Y  R  S  *  N  R  T  L  Q  R  I  W  V  C  P   : I  C  S  T  *  T  C  *  G  G  S  K  F  E  W  *  A  *  D  C  G  S  D  H  Q   : G  F  I  R  Y  *  T  C  W  S  T  R  C  W  S  *  N  C  R  L  *  *  *  *  R  G  W  P   : G  I  E  C  S  V  K  G  H  A  Y  G  K  I  G  P  Q  W  C  C  F  R  :  C  C  G  Y  T  R  S  S  C  T  *  W  C  S  S  A  S  N  E  H  A  N  G  W  S  N  S  F  S  E  Y  A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D  G  S  H  L  K  C  L  K  T  A  D  L  F  I  V  I  A  I  V  Q  L  I  L  *  F  K  L  G  Y  Q  R  L  V  K  V  P  Y  T  R  T  D  E  V  I  G  C  V  I  L  T  Q  Y  S  H  F  S  Q  L  S  L  M  E  F  I  C  I  F  F  W  Q  L  D  *  *  D  L  S  V  F  A  I  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78010" stop="78065"/>
                    <exon start="79477" stop="79705"/>
                    <exon start="80147" stop="80233"/>
                    <exon start="80325" stop="80399"/>
                    <exon start="80516" stop="80599"/>
                    <exon start="82612" stop="82676"/>
                    <exon start="82797" stop="82986"/>
                    <exon start="83107" stop="83195"/>
                    <exon start="83380" stop="83494"/>
                    <exon start="84054" stop="84095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGRLLFGQPVMVKPSEAEKNLVQSTASGGGSGLAGPNAASERKLYVGNLHFNMTELQLRQIFEAFGPVELVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTEHVGVQDAGAKTADFDDDEGGGLALNAQSRAMLMAKLDRSGVASGVAGTLGVPALNGAAQPAMSMPMGGATAFQNMLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80144" e_stop="80233"/>
            <exon e_start="80325" e_stop="80399"/>
            <exon e_start="80516" e_stop="80599"/>
            <exon e_start="82612" e_stop="82676"/>
            <exon e_start="82797" e_stop="82986"/>
            <exon e_start="83107" e_stop="83195"/>
            <exon e_start="83380" e_stop="83494"/>
            <exon e_start="84054" e_stop="84347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80144" e_stop="80233" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80325" e_stop="80399" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80516" e_stop="80599" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82612" e_stop="82676" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.360" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="82797" e_stop="82986" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83107" e_stop="83195" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83380" e_stop="83494" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84054" e_stop="84347" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80144" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82676"/>
              <exon start="82797" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82888" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279822" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83111" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83112" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83155" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217779" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83458" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83459" stop="83494"/>
              <exon start="84054" stop="84326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218279" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA : TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG : GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG : GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG : TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</gDNA_template>
            <first_frame> Q  I  F  E  A  F  G  P  V  E  L  V  Q  L  P  T  D  P  E  T  G  H  C  K  G  F  G  F  V  Q  :  F  A  Q  L  E  H  A  K  A  A  Q  S  L  N  G  K  L  E  I  A  G  R  T  I  K  :  V  S  S  V  T  E  H  V  G  V  Q  D  A  G  A  K  T  A  D  F  D  D  D  E  G  G  G  L  :  A  L  N  A  Q  S  R  A  M  L  M  A  K  L  D  R  S  G  V  A  S  G :   V  A  G  T  L  G  V  P  A  L  N  G  A  A  Q  P  A  M  S  M  P  M  G  G  A  T  A  F  Q  N  M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  G  A  I  *  N  V  *  R  L  L  I  C  L  L  *  L  Q  *  C  S  *  F  C  N  L  S  W  D  T  K  D  S  L  K  F  L  I  P  G  Q  M  R  L  *  V  V  *  F  *  H  S  I  L  I  L  V  N  C  H  L  W  N  S  F  V  F  F  F  G  N  L  I  D  E  I  *  V  C  L  L  L  E  N </first_frame>
            <second_frame>  R  F  L  K  L  L  G  Q  W  S  L  F  N  Y  L  Q  I  L  K  Q  D  I  A  K  D  L  G  L  S  N :   L  L  N  L  N  M  L  R  R  L  K  V  *  M  V  S  L  R  L  R  V  G  P  S  R :   F  H  P  L  L  N  M  L  E  Y  K  M  L  E  L  K  L  Q  T  L  M  M  M  K  G  V  A  W :   H  *  M  L  S  Q  G  P  C  L  W  Q  N  W  T  A  V  V  L  L  Q   : V  L  R  V  H  *  E  F  L  H  L  M  V  Q  L  S  Q  Q  *  A  C  Q  W  V  E  Q  Q  L  F  R  I  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W  E  P  S  K  M  S  E  D  C  *  F  V  Y  C  N  C  N  S  A  A  D  F  V  I  *  V  G  I  P  K  T  R  *  S  S  L  Y  P  D  R  *  G  Y  R  L  C  N  F  D  T  V  F  S  F  *  S  T  V  T  Y  G  I  H  L  Y  F  F  L  A  T  *  L  M  R  F  K  C  V  C  Y  W  K   </second_frame>
            <third_frame>   D  F  *  S  F  W  A  S  G  A  C  S  I  T  Y  R  S  *  N  R  T  L  Q  R  I  W  V  C  P   : I  C  S  T  *  T  C  *  G  G  S  K  F  E  W  *  A  *  D  C  G  S  D  H  Q   : G  F  I  R  Y  *  T  C  W  S  T  R  C  W  S  *  N  C  R  L  *  *  *  *  R  G  W  P   : G  I  E  C  S  V  K  G  H  A  Y  G  K  I  G  P  Q  W  C  C  F  R  :  C  C  G  Y  T  R  S  S  C  T  *  W  C  S  S  A  S  N  E  H  A  N  G  W  S  N  S  F  S  E  Y  A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D  G  S  H  L  K  C  L  K  T  A  D  L  F  I  V  I  A  I  V  Q  L  I  L  *  F  K  L  G  Y  Q  R  L  V  K  V  P  Y  T  R  T  D  E  V  I  G  C  V  I  L  T  Q  Y  S  H  F  S  Q  L  S  L  M  E  F  I  C  I  F  F  W  Q  L  D  *  *  D  L  S  V  F  A  I  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80144" stop="80233"/>
                    <exon start="80325" stop="80399"/>
                    <exon start="80516" stop="80599"/>
                    <exon start="82612" stop="82676"/>
                    <exon start="82797" stop="82986"/>
                    <exon start="83107" stop="83195"/>
                    <exon start="83380" stop="83494"/>
                    <exon start="84054" stop="84095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIFEAFGPVELVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTEHVGVQDAGAKTADFDDDEGGGLALNAQSRAMLMAKLDRSGVASGVAGTLGVPALNGAAQPAMSMPMGGATAFQNMLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="90750" PGL_stop="91807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90750" e_stop="91807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="90750" e_stop="91807" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90750" stop="91260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91061" stop="91569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91184" stop="91807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</gDNA_template>
            <first_frame> F  V  L  R  P  N  S  G  V  *  S  G  N  P  V  *  G  V  G  F  *  G  R  V  I  T  M  E  W  L  W  S  M  T  *  R  K  K  C  P  F  S  S  V  M  S  M  V  V  D  G  F  G  A  L  T  I  V  S  R  I  R  F  W  V  H  P  D  P  M  T  E  P  C  K  C  G  T  R  G  A  V  T  V  A  S  V  *  L  W  Y  N  L  P  K  G  I  V  H  P  C  V  A  S  N  L  I  R  S  K  V  Q  S  *  P  L  D  A  L  T  G  G  S  T  R  M  I  *  G  K  C  L  T  H  S  L  S  W  M  D  M  R  K  Q  L  L  T  L  D  L  L  M  N  V  L  L  F  L  R  A  *  M  V  V  *  K  C  G  M  R  R  T  R  R  S  F  A  P  T  R  G  I  V  I  V  G  G  L  *  G  Y  R  Y  G  N  R  V  D  *  F  V  V  A  Q  K  I  I  K  F  L  Y  T  I  K  D  G  V  N  Q  Y  G  C  M  D  A  N  Q  D  M  S  M  G  S  L  V  A  Y  V  G  N  K  R  T  K  I  N  A  H  S  *  L  E  I  Q  M  V  F  Y  E  F  L  M  A  R  G  N  D  Y  I  Y  I  F  T  Q  N  P  V  K  D  E  V  S  A  K  C  V  I  L  F  H  E  K  S  I  V  A  N  T  T  R  *  H  I  F  F  F  L  F  Q  L  F  F  *  L  I  Q  E  L  E  E  L  F  T  I  Y  I  C  L  K  *  I  D  R  G  Y  D  S  I  E  K  Y  L  K  K  F  K  L  Q  M  L  Y  S   </first_frame>
            <second_frame>  L  Y  S  G  Q  T  R  E  Y  K  V  E  T  R  F  R  E  S  G  F  R  V  G  *  L  R  W  S  G  Y  G  V  *  P  R  E  K  N  A  R  F  R  A  *  *  A  W  W  *  T  G  L  E  H  *  L  L  S  V  G  S  G  F  G  C  I  R  I  R  *  R  N  H  A  N  V  G  P  A  V  R  *  Q  W  Q  V  F  S  Y  G  T  T  Y  Q  R  V  *  Y  T  R  V  L  R  R  I  *  S  V  Q  R  S  N  R  S  R  W  M  R  *  P  E  G  L  R  V  *  Y  E  E  N  A  *  P  T  L  C  P  G  W  T  *  E  S  S  Y  L  H  *  I  C  *  *  T  Y  Y  Y  F  F  E  H  R  W  L  F  K  N  V  E  C  G  G  P  E  G  P  S  H  L  Q  G  A  *  *  *  *  E  V  C  R  V  I  G  M  E  T  G  W  I  N  L  L  W  L  R  K  *  S  S  F  C  I  R  *  K  M  G  *  T  N  M  D  V  W  T  R  T  K  T  *  A  W  V  R  *  *  R  M  L  A  T  K  G  R  K  S  M  H  T  R  S  W  R  F  R  W  C  F  T  S  F  *  W  Q  E  E  M  T  I  Y  I  Y  S  L  K  I  Q  *  K  T  K  Y  R  Q  N  V  *  Y  Y  F  M  R  S  Q  S  W  P  I  Q  Q  G  N  T  F  S  F  F  F  F  N  Y  S  S  N  *  Y  R  S  *  R  N  C  S  P  F  T  F  V  *  N  R  *  I  E  D  M  I  R  *  K  N  I  *  R  N  L  N  C  K  C  Y  I  V  </second_frame>
            <third_frame>   C  T  P  A  K  L  G  S  I  K  W  K  P  G  L  G  S  R  V  L  G  S  G  D  Y  D  G  V  V  M  E  Y  D  L  E  K  K  M  P  V  F  E  R  D  E  H  G  G  R  R  V  W  S  I  D  Y  C  Q  S  D  P  V  L  G  A  S  G  S  D  D  G  T  M  Q  M  W  D  P  R  C  G  D  S  G  K  C  L  A  M  V  Q  P  T  K  G  Y  S  T  P  V  C  C  V  E  F  N  P  F  K  G  P  I  V  A  V  G  C  A  D  R  R  V  Y  A  Y  D  M  R  K  M  L  D  P  L  F  V  L  D  G  H  E  K  A  V  T  Y  I  R  F  V  D  E  R  T  I  I  S  S  S  I  D  G  C  L  K  M  W  N  A  E  D  Q  K  V  L  R  T  Y  K  G  H  S  N  S  R  R  F  V  G  L  S  V  W  K  P  G  G  L  I  C  C  G  S  E  N  N  Q  V  F  V  Y  D  K  R  W  G  E  P  I  W  M  Y  G  R  E  P  R  H  E  H  G  F  V  S  S  V  C  W  Q  Q  K  D  E  N  Q  C  T  L  V  A  G  D  S  D  G  V  L  R  V  F  N  G  K  R  K  *  L  Y  I  Y  I  H  S  K  S  S  K  R  R  S  I  G  K  M  C  N  I  I  S  *  E  V  N  R  G  Q  Y  N  K  V  T  H  F  L  F  S  F  S  I  I  L  L  I  N  T  G  V  R  G  I  V  H  H  L  H  L  S  E  I  D  R  *  R  I  *  F  D  R  K  I  S  E  E  I  *  I  A  N  A  I  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90752" stop="91549"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTPAKLGSIKWKPGLGSRVLGSGDYDGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCQSDPVLGASGSDDGTMQMWDPRCGDSGKCLAMVQPTKGYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMLDPLFVLDGHEKAVTYIRFVDERTIISSSIDGCLKMWNAEDQKVLRTYKGHSNSRRFVGLSVWKPGGLICCGSENNQVFVYDKRWGEPIWMYGREPRHEHGFVSSVCWQQKDENQCTLVAGDSDGVLRVFNGKRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="106228" PGL_stop="97751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106228" e_stop="105926"/>
            <exon e_start="104277" e_stop="104230"/>
            <exon e_start="102643" e_stop="102578"/>
            <exon e_start="102145" e_stop="102093"/>
            <exon e_start="101201" e_stop="101136"/>
            <exon e_start="100129" e_stop="100055"/>
            <exon e_start="98419" e_stop="98345"/>
            <exon e_start="98073" e_stop="97995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106228" e_stop="105926" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105925" i_stop="104278" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104277" e_stop="104230" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102643" e_stop="102578" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102145" e_stop="102093" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101201" e_stop="101136" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="101135" i_stop="100130" i_length="1006"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100129" e_stop="100055" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="100054" i_stop="98420" i_length="1635"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98419" e_stop="98345" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="98073" e_stop="97995" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106228" stop="105926"/>
              <exon start="104277" stop="104261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106227" stop="105926"/>
              <exon start="104277" stop="104230"/>
              <exon start="102643" stop="102578"/>
              <exon start="102145" stop="102093"/>
              <exon start="101201" stop="101136"/>
              <exon start="100129" stop="100055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106021" stop="105926"/>
              <exon start="104277" stop="104230"/>
              <exon start="102643" stop="102578"/>
              <exon start="102145" stop="102093"/>
              <exon start="101201" stop="101136"/>
              <exon start="100129" stop="100055"/>
              <exon start="98419" stop="98345"/>
              <exon start="98073" stop="97995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTAT</gDNA_template>
            <first_frame> *  S  Q  I  Y  G  L  Q  K  L  T  Y  K  H  Q  C  T  M  Y  N  I  S  V  L  K  N  C  K  T  S  L  L  V  L  P  F  L  H  F  T  N  T  P  K  T  V  Q  S  T  I  F  *  N  Q  N  *  K  P  K  Q  L  I  S  L  F  F  S  S  D  F  Y  G  S  G  N  F  C  I  K  R  W  G  Q  R  *  E  L  F  S  G  C  L  H  L  S  P  V  E  *  F  S  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   N  V  I  I  L  D  R  L  P  F  L  A  F  M  F  P  L  L  *  M  Q  K  L  G  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *  G  M  Y </first_frame>
            <second_frame>  R  A  K  S  M  D  Y  K  S  *  R  T  N  I  N  A  Q  C  T  I  Y  L  Y  *  K  I  A  K  R  L  S  W  F  Y  H  F  F  T  L  Q  I  L  P  K  Q  S  N  R  Q  F  S  K  I  K  I  E  N  Q  N  N  *  F  L  Y  F  S  V  Q  I  S  T  E  V  E  I  F  A  L  K  D  G  D  N  D  E  N  C  F  R  A  A  Y  T  C  H  L  W  N  D  S  R :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  M  *  L  S  *  I  D  C  H  S  S  P  S  C  F  H  C  C  R  C  K  N  W  E   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  V  C   </second_frame>
            <third_frame>   E  P  N  L  W  T  T  K  V  D  V  Q  T  S  M  H  N  V  Q  Y  I  C  I  E  K  L  Q  N  V  S  L  G  S  T  I  S  S  L  Y  K  Y  S  Q  N  S  P  I  D  N  F  L  K  S  K  L  K  T  K  T  T  N  F  S  I  F  Q  F  R  F  L  R  K  W  K  F  L  H  *  K  M  G  T  T  M  R  I  V  F  G  L  L  T  L  V  T  C  G  M  I  L   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  E  C  D  Y  L  R  S  I  A  I  P  R  L  H  V  S  T  V  V  D  A  K  T  G  K  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105992" stop="105926"/>
                    <exon start="104277" stop="104230"/>
                    <exon start="102643" stop="102578"/>
                    <exon start="102145" stop="102093"/>
                    <exon start="101201" stop="101136"/>
                    <exon start="100129" stop="100055"/>
                    <exon start="98419" stop="98345"/>
                    <exon start="98073" stop="97996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGTTMRIVFGLLTLVTCGMILGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEECDYLRSIAIPRLHVSTVVDAKTGKGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106226" stop="105993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPNLWTTKVDVQTSMHNVQYICIEKLQNVSLGSTISSLYKYSQNSPIDNFLKSKLKTKTTNFSIFQFRFLRKWKFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105938" e_stop="105926"/>
            <exon e_start="105869" e_stop="105594"/>
            <exon e_start="104277" e_stop="104230"/>
            <exon e_start="102643" e_stop="102578"/>
            <exon e_start="102145" e_stop="102093"/>
            <exon e_start="101201" e_stop="101136"/>
            <exon e_start="98419" e_stop="98345"/>
            <exon e_start="98073" e_stop="98003"/>
            <exon e_start="97909" e_stop="97858"/>
            <exon e_start="97756" e_stop="97751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="0.692"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.692">
            <gDNA_exon_boundary e_start="105938" e_stop="105926" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105925" i_stop="105870" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="105869" e_stop="105594" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105593" i_stop="104278" i_length="1316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104277" e_stop="104230" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104229" i_stop="102644" i_length="1586"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102643" e_stop="102578" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102577" i_stop="102146" i_length="432"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102145" e_stop="102093" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102092" i_stop="101202" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101201" e_stop="101136" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.985">
            <gDNA_intron_boundary i_start="101135" i_stop="98420" i_length="2716"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98419" e_stop="98345" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98344" i_stop="98074" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="98073" e_stop="98003" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98002" i_stop="97910" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97909" e_stop="97858" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97857" i_stop="97757" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97756" e_stop="97751" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105938" stop="105926"/>
              <exon start="105869" stop="105594"/>
              <exon start="104277" stop="104230"/>
              <exon start="102643" stop="102578"/>
              <exon start="102145" stop="102093"/>
              <exon start="101201" stop="101136"/>
              <exon start="98419" stop="98345"/>
              <exon start="98073" stop="98003"/>
              <exon start="97909" stop="97858"/>
              <exon start="97756" stop="97751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGATTCTCG : CGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTACGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTCGTGATGATCATTCTTGATTAGGATG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG : GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT : TTTAAT</gDNA_template>
            <first_frame> G  M  I  L   : A  F  F  F  L  I  F  *  F  V  S  S  G  I  C  R  F  D  H  S  N  H  Q  W  C  *  L  L  D  W  I  G  V  N  L  D  *  L  K  T  P  C  G  K  K  G  K  K  F  K  W  *  Y  I  C  V  F  V  L  E  M  E  V  *  T  L  K  I  E  S  L  R  V  G  W  W  R  G  Y  M  G  F  D  L  V  M  I  I  L  D  *  D   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R :   Y  E  K  N  Q  F  Y  R  A  H  H  D  Y  F  S  D  S  :  F  N </first_frame>
            <second_frame>  E  *  F  S  :  R  F  F  F  *  F  F  D  L  S  P  P  A  F  A  V  S  I  I  V  I  I  S  G  V  D  Y  L  I  G  L  E  L  I  W  T  N  *  K  P  H  V  E  K  K  G  K  N  L  N  G  D  T  Y  V  C  L  F  W  K  W  R  F  K  L  *  R  L  N  L  Y  G  W  G  G  G  G  G  T  W  G  L  I  S  *  *  S  F  L  I  R  M  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *   : G  M  K  R  I  S  S  I  E  P  I  M  T  I  S  L  I  V :   L   </second_frame>
            <third_frame>   N  D  S  R :   V  F  F  F  N  F  L  I  C  L  L  R  H  L  P  F  R  S  *  *  S  S  V  V  L  I  T  *  L  D  W  S  *  S  G  L  I  K  N  P  M  W  K  K  R  E  K  I  *  M  V  I  H  M  C  V  C  F  G  N  G  G  L  N  F  K  D  *  I  F  T  G  G  V  V  E  G  V  H  G  V  *  S  R  D  D  H  S  *  L  G  W :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  :  V  *  K  E  S  V  L  *  S  P  S  *  L  F  L  *  *   : F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105597" stop="105594"/>
                    <exon start="104277" stop="104230"/>
                    <exon start="102643" stop="102578"/>
                    <exon start="102145" stop="102093"/>
                    <exon start="101201" stop="101136"/>
                    <exon start="98419" stop="98345"/>
                    <exon start="98073" stop="98003"/>
                    <exon start="97909" stop="97858"/>
                    <exon start="97756" stop="97751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYEKNQFYRAHHDYFSDSFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="115443" PGL_stop="120244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115443" e_stop="115560"/>
            <exon e_start="117056" e_stop="117142"/>
            <exon e_start="118482" e_stop="118573"/>
            <exon e_start="118733" e_stop="118841"/>
            <exon e_start="118924" e_stop="118959"/>
            <exon e_start="119769" e_stop="119855"/>
            <exon e_start="119936" e_stop="120244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115443" e_stop="115560" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.934">
            <gDNA_intron_boundary i_start="115561" i_stop="117055" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117056" e_stop="117142" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118482" e_stop="118573" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118841" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.945">
            <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118924" e_stop="118959" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119769" e_stop="119855" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="119936" e_stop="120244" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115443" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115476" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115492" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115496" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115497" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115518" stop="115560"/>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117075" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117093" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118745" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118828" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="120244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG : ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATC</gDNA_template>
            <first_frame> K  Y  K  T  V  Q  K  I  E  Y  I  E  I  I  G  I  G  T  K  N  P  P  T  P  K  K  K  K  E  E  L  F  V  P  W  I  S  S  H   : D  S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  M  *  A  R  L  N  F  Q  F  S  Q   : G  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G  *  G  C  Q  R  R  G  K  F  S  *  *  H  H  C  T  G  Y  *  M  R  V  C  R  Q  R  S  S  V  L  S  A  F  M  F  F  S  C  N  P  N  I  I  S  S  F  N  V  F  V  *  L  C  S  Y  K  *  E  F  L  C  S  N  E  F  S  S  Q  P  K  R  G  V  Y  F  T  L  L  P  K  N  C  W  S  Y  I  *  Y  L  F  L  W  W  S  *  L  I  T  H  </first_frame>
            <second_frame>  N  T  R  L  Y  R  K  *  S  I  *  K  *  *  E  *  E  Q  K  I  P  Q  L  Q  R  R  R  R  R  S  C  L  Y  L  G  S  P  A  M  :  I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  V  C  E  L  D  L  I  F  N  F  H  K  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  E  A  A  K  E  E  A  S  S  L  S  N  I  I  A  Q  A  T  K  *  E  Y  A  G  S  V  Q  V  F  *  V  H  L  C  F  S  A  V  I  Q  T  L  F  L  L  S  M  F  S  F  N  F  V  V  I  N  R  N  F  F  V  V  M  S  F  L  L  N  L  S  V  V  F  T  S  L  C  C  L  K  T  A  G  H  I  Y  S  T  C  S  S  G  G  A  S  L  *  R  I </second_frame>
            <third_frame>   I  Q  D  C  T  E  N  R  V  Y  R  N  N  R  N  R  N  K  K  S  P  N  S  K  E  E  E  G  G  V  V  C  T  L  D  L  Q  P  * :   F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   Y  V  S  *  T  *  F  S  I  F  T  R :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L  R  L  P  K  K  R  Q  V  L  L  V  T  S  L  H  R  L  L  N  E  S  M  Q  A  A  F  K  C  F  E  C  I  Y  V  F  Q  L  *  S  K  H  Y  F  F  F  Q  C  F  R  L  T  L  *  L  *  I  G  I  S  L  *  *  *  V  F  F  S  T  *  A  W  C  L  L  H  S  V  A  *  K  L  L  V  I  Y  I  V  L  V  P  L  V  E  L  A  Y  N  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115492" stop="115560"/>
                    <exon start="117056" stop="117142"/>
                    <exon start="118482" stop="118573"/>
                    <exon start="118733" stop="118841"/>
                    <exon start="118924" stop="118959"/>
                    <exon start="119769" stop="119855"/>
                    <exon start="119936" stop="120007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKIPQLQRRRRRSCLYLGSPAMIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELVIAGELQESSKKTVARLIAAQDSLVEAAKEEASSLSNIIAQATK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120038" stop="120238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHLCFSAVIQTLFLLSMFSFNFVVINRNFFVVMSFLLNLSVVFTSLCCLKTAGHIYSTCSSGGASL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117056" e_stop="117142"/>
            <exon e_start="118482" e_stop="118573"/>
            <exon e_start="118733" e_stop="118841"/>
            <exon e_start="119769" e_stop="119855"/>
            <exon e_start="119936" e_stop="119948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="0.989"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117056" e_stop="117142" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="118482" e_stop="118573" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118841" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118842" i_stop="119768" i_length="927"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119769" e_stop="119855" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119936" e_stop="119948" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117056" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTG</gDNA_template>
            <first_frame> I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  </first_frame>
            <second_frame>  F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L </second_frame>
            <third_frame>   S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117056" stop="117142"/>
                    <exon start="118482" stop="118573"/>
                    <exon start="118733" stop="118841"/>
                    <exon start="119769" stop="119855"/>
                    <exon start="119936" stop="119947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSAYYILDELVIAGELQESSKKTVARLIAAQDSLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 171 chains have been computed
$ 
$ memory statistics:
$ 228752 bytes spliced alignments in total
$ 86 spliced alignments have been stored
$ 2659 bytes was the average size of a spliced alignment
$ 36600 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1464 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 205 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:51:02
-->
