<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:51:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_marker_seqs" ref_id="C2_At3g54460" ref_strand="+" ref_description="C2_At3g54460">
      <seq>ctccaaacacccccagtagccagctttctcatctgcaacccttacttaagtacctccatgatgaagcttatggacagaatcagaaagcctgggaagctggtattctcaggccatttgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcccccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtactaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtgacagaggcaggtgatgatattcaagaaactatggatatcttagttgaggatggtctggatcccacttcagaagagtatggtctgataaaatatcacattttatttggtggaaactgcatgaggtgtaaagtatggtgccgtctaccagtgattacaccttgtaaacatctattatgccttgactgtgtttctttagatagcgagaagtgtacaattcctggctgtggtaacttgtatgagatgcaaagtcctgaaacactggcccgtcctgaaaatcctaatccaaagtggccccgttcaaaggatctgattgagttgcaaccatcttataaacaggatgactgggatcccgattggcatcaacatctagcagtaagttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="19527" stop="21141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19827" g_stop="20373" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20374" i_stop="20470" i_length="97">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20471" g_stop="20684" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="761" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20685" i_stop="20792" i_length="108">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20793" g_stop="20841" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="808" r_length="47" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="C2_At3g54460" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g54460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19827" e_stop="20373"/>
          <exon e_start="20471" e_stop="20684"/>
          <exon e_start="20793" e_stop="20841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAGGTTAGTCATAGCCTCTGAGATCATATGTGGGCAATGTTTTCGTTTAGACCAAATGCATCATGATTTTGATTTTGTTTTCTAAAAATAATTTATGTAGGTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAGGTAGGTCTAATCCTCAAGGACATACATATTGGGCAAGACCTAGTTTATAGTTCATTTTTTTTTATCCCGTAACAAACTACTTACTAATATTTGATTATTCTTCTGAAGGATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTT</genome_strand>
        <mrna_strand>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTACTTAAGTACCTCCATGATGAAGCTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAGGCCATTTGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCCCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACTACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTGACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAAGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG.................................................................................................GTGTAAAGTATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTCCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCTAATCCAAAGTGGCCCCGTTCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG............................................................................................................GATGACTGGGATCCCGATTGGC-ATCAACATCTAGCAGT-AAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_marker_seqs" ref_id="C2_At5g09880" ref_strand="+" ref_description="C2_At5g09880">
      <seq>caatatgtactatagtttgtgacataggaaagtgaagggtctgcatgagctctagctggttaatgaagtcatgtttaaaataattccttgctatgatctatgccatacagattctcattatggtctgagtcatttatacaggagattcaaggagaagaaagaaaaaatagaaccagaagctgatccagaaagggaccagagaactgtttttgcttaccagatgcccttgaaggcgactgaaagggatgtgtatgagttcttctcacaagcaggaaaggtgagggatgtgcggttaatcatggaccggaattcaaggcgatctaaaggagttgggtacattgagttttatgatgctatgtccgtgccaatggctattgctttatctggtcgcttgctttttggccaaccagtaatggtaaaaccttctgaagctgaaaagaaccttgttcagtcaaccgcatctggtggtggatcagggttggcggggccaaatgctgcctcagaaagaaaactttatgttggaaatcttcactttaacatgacagaattgcagcttagacagatttttgaagcttttgggccagtggagcttgttcaattacctacagatcctgaaacaggacattgcaaaggatttgggtttgtccaatttgctcaacttgaacatgctaaggcggctcaaagtttgaatggtaagcttgagattgcgggtcggaccatcaaggtttcatccgttactgaacatgttggagtacaagatgctggagctaaaactgcagactttgatgatgatgaagggggtggcctggcattgaatgctcagtcaagggccatgcttatggcaaaattggaccgcagtggtgttgcttcaggtgttgcgggtacactaggagttcctgcacttaatggagcagctcagacagcaatgagcatgccaatgggtggggcaacagcttttccaaatatgctcccaacacaactcattgcttccatggctcccgaacccattggaattcccagcgagtgtttgttattaaaaaacatgtttcgatcctgcaactgagacggagccagaatttgatttggatattaaagatgatgtgaaggaggaatgttcgaagtatggcagggtcaagcatatccacgtggacaagaacacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcagatcgatttcagccatctacttgcaaccatatgaatatgatgccaagttcaaaggtacaggctaaatggtttcagaagggggccatctaaaatgtctgaagactgctgatttgtttattgtaattgcagaactgcagctagctgattttgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="76879" stop="84472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77141" g_stop="77355" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77356" i_stop="77483" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77484" g_stop="77540" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="277" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77541" i_stop="78009" i_length="469">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78010" g_stop="78065" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="333" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79477" g_stop="79705" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="562" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80147" g_stop="80233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="649" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80325" g_stop="80399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="724" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80516" g_stop="80599" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="808" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82612" g_stop="82676" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="873" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120">
            <donor d_prob="0.360" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82797" g_stop="82986" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1064" r_length="191" r_score="0.953"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="83107" g_stop="83195" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1153" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="83380" g_stop="83494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1268" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="84054" g_stop="84099" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1269" r_stop="1314" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="C2_At5g09880" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1308</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g09880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77141" e_stop="77355"/>
          <exon e_start="77484" e_stop="77540"/>
          <exon e_start="78010" e_stop="78065"/>
          <exon e_start="79477" e_stop="79705"/>
          <exon e_start="80147" e_stop="80233"/>
          <exon e_start="80325" e_stop="80399"/>
          <exon e_start="80516" e_stop="80599"/>
          <exon e_start="82612" e_stop="82676"/>
          <exon e_start="82797" e_stop="82986"/>
          <exon e_start="83107" e_stop="83195"/>
          <exon e_start="83380" e_stop="83494"/>
          <exon e_start="84054" e_stop="84099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATGTTCTATAG--TGTGACATAAGAAAGTGAAGGGT---CATGAGCTCTAGCTGGTTAATAAATTCATGTTTAAAACAATTTTTTGCTATGATCTATGCCATACAGATTCTCATCATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAGGTAAATAGTTTCAACATCTTCTTTTCTGCCTTTTTCATCTACATACAACATACATAGTCATTTCTAGCTAGGTGGTTTATCTGGTCAAAAGGTTCATTCTCTGATTTATTTGGTTCGAACTTTTGTAGATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTTTTCTCACAAGCAGGAAAGGTTAGTTCACTTGGTCCTCTATATTGCTTTATTGTAAATGAACTATGCTGCTGGCAAATTTATGGTTTGATGATCAATGTGTGCTGGTTATGCTTGTCCTAGAATTTCATTTTCTTGTGGTCCTCTAGAATTGATATGATACTTAATGTTTAGGACCCAAAAAATGATTTGTGTTCTTCGCTTGACCCTTCTTCCATAAACTATTAGTGCATGCAGTATGCATCTCCTTGCTGTTGCAGTAACTGCTTCTCTGCCTTCAGTATCAGGTAGCTTAATTACATTCTCATGTCTCAAGATTCTATACTTGATTGGATGAGCAATGATAGTCTGATCAGGTTTAACTGATGATTTTATGCATGACCTATTGCAGGTCTTGTGGTGTATATTGTATGAGTGTACCAAAAGGCCCTCTAAATACAGTTTATCCTGGTGATTTCTATATTTTGACACTCATTTTATACATTTCTAGGTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGGGTATGTCTGTGAAACTCAACTCTCTATCTTACAATTTTGCATTTAATTTTTCCTTGATTTCTTTCTCAAGTAAATTAATGTGCATCTTGCTTGTGAAGTACTCCTTAAAGTCCCAAGGATTTATGCAGTGCAGCTTTCTTTTTGGAGGGGGACGCTAATCATATTTGATTGACTGTAGCATTGGGGCATATCATTTTCCTAATTCAAACTGAATTTTTGTTTGTCTACTAATGATGGTTAATAAAATTGCTGTGTTGAAATCAAACTGTATTCTTGATTTGTTCCTCCGACTTCTGTGTCTCTTTTACACTATGCCTTTAGAAAAACTGTGTTTCTCATGGCTGTTTTTGCTTTTTTATAAATCTTCCTTTTGTTTGGTTGTTCTATGACGTCGGACGCCTAAAATATATTTCCAGTCCCAAGTCTGGATAAGGAGAGAAAGGTTGTGGGTTGTAAATAAAATGTGTTCAAGCAGAGGAAATGTAAAGTGATGGTTCTATGCTGACCTAAGTCGAGGATCGTGTAGTTGTCGTTGTAAACATGCATTTTTGATTTCCTTGGAAAAATCATTATGATTGGTGGAGCTAAGGTTATTTGTATTGTACTTACAAAATGAAGAGGTTTATTTGGATTGCCAAGTACTGGATCCCAAGATTGCATCATTTGAAGTTTATAGTTATGAGATGTGGTCTGTAGATAATATAACAATTGCAACCATAGTAAAACAAACAGCAGTAATTGGTCTTGAGAGCATTTAAAGTTCCAGGGATATGGATTAGATGCTAACTGCATGATTTCAAGTGCATTTACCTAAGTACTATTGGTATGCCAGTGGGACCAAGGTCTGTGTATTTACCTCTGTGGAATTCCGAGAAGTTTCTTGTGGCTCTTCTTACTTTTTACTGTTGGGAATTCCAAGCACGGGTTTAATCTGGTTGTTGACATTGATTACTTATTGCTGTTCTAGGGGCTAGTTACTTCCATTGATATTTTAGATGAAGTAAAAATATTACTCCCTCCGTTTTAAAAGTATGACCTCTTTCTTTTTTTGGTAATAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTCGTACATTGACATAATTTTATTTTAGGACCACGTGATCAAAAGTCTTCTTTATTTTCTTAAACTTCGTGTCAAAGTCAAACTATGTCATTTTTTGTTAAACGAAGGGAGTATTAACAACAGGGAGAATCTAACACCGTACTCAAGGTGTAAATCTAGAAGTAGGAAGCTTGCATAATGCATGATTTTCTACAAAAGCCACCCAAGTATCTAAACAACTAGGTATATCTTGGGTGCACCAAAAAAACAAGGGATCCATGCAGGTTCATTGAGTTTCAGTTTCGTTAATGAATTATTGGTATCTATGCAGGTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAGGTAACAAGACTGACTTCTCTTTATCTGTGTATAGCCACTAGAATATTCACTTGTCATGTGCTCTATATAATGGCGGCGCTTAAAGACGCAATATTCTGCAACGCCGATCTACCTTGACTTATAAAATATAACATGTTGCTGAACAAATCTGTGTTTTAGAGGAAATATATAGTTCATGAAAACGCCTATATGTTTATGTATCAAATCCTTCATTTATAGGAAAGAAAAAAATCGTAAGATTTTTCTTTGGGATTTTGTCTTTCTTGTAAATTCAGTACATGATAGACACCCATACATGTGTTTGCCTAAACTTTATTTCTTCTGTAACACTAGTTTTTTTCCAGCATGTGTAATTGACTTTTCCAATGTCTTTGCCACAATAGTCTGACTCAGTGAAGTCTTCTATTTCTAATTGTTTTCTGTTGTATCTGGTGTGGTCAGATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAAGTCAGTATTTAGTGAACTGCAATATTTCTATCCTGTGTTTTCTCTATCATTATTTTATTTCTCTGAGTATCTCCTTTGTGGTTCATCTTAGTTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAGGTATGTAGATAGACGAAACTCGTTGCTGATGTATGGTCTCTGTAGACCTCACCTCTCTGAATACTGTTGTATGACAATATCTACTGATCCTTGACTGGCTTTTTGGTTCAATGCAGGTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTGGTGAGTTTGCTCTTAAATCATTAGAGAAGGACCTTACAAGTCATTTTTTCCTTTTATTTAGGTTTAATACTTCGTAAATTATCAGTATGATGGAGGTGGTAAAAGGTCCATCCATGTTTTGCCAGTGTTATGCATTAATTTTTATTGTTCATCTCTCTGTTACTTTCTTCCTAATTCCCCTTTTCTTTTATGGTGTTTGTTCGGTATTCAAGAAAAAAATGAACCAAACCAACTAAATAATTCATTAATATATAAAGTTTATGATCATAAAAAAATATTTTTATTCAAGACACTTTAAATATCTTTAACCACAAAAAATTGTTTTAGATTTTTTTTTTTTAAAACGTCGTCTTGTGTACTCCAATCTTCTGTATTGAAGTTATTTCAAAGTGATTTATTGTTTTAGCATCGAGGCTAGATAAGTTTGTAAGTTGTCACGTCTCATAGTGAAATTTTGTCTCAGATATATGCTTTCAATAGATAATAGGTTTAATCAAGTTAACTGATTCTCGCTAAACATAGACATATGAGAAATTGTGTCTTAGCTCTAGTAGATATTGAAATGAATTTGTATTTTCATGTGGGAAAAACCAACAAAACCGAAACAAGATAGTGATTCTTTGTTTTGGTTCACAGATGAAAACAGAGAAACAAAACCATGAACGCTAAGCATAAAACCGAAAAAGAGCGTAACACGGAGCCATTATCAAGGCTTAGGAAGTTTCTGCTTTGACTTCATCCATCTGGTTATGTTGTTTTCAACGAGTGATATCTCTTCCTCCGAGGGAAATTCTAATTTTGTGTTGAAGCCACTCAGGCAGAATTCTACCTGATTTTTAGTTCTTGTTTTTACATGTTCTAGAAAATTTACAGCACTTCTTTTTTCCTATTTTGGGATGTTAATAAATGTGAGACTTTAGCACTGCCCCATAAATAATACTATTTTATACAATATCCACATTTTCTCGAGAGTTCAATCCCTAACTATGGGGTTGAGCTAAGCCCAGGTGCATATCTTTACATGGTATTATAGCTAGGCCCATCCCTATTTGGGCTACCGGTCCATGCTCCTGTTGGGCCTAAGCGTGAAGGGTTAGAGTCCTCCATCCTATGTGGAATGGATGGGTGGTTTAATAATCTTGGACGGTTGGACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAACACAAGCTATCTTTTAGATATGAGACATGACTTGGGCGCAAGTGTCATATCTTTGCATAAACATCGATGTTGATGTTTGCAATATCAAGCTAACTTTTCAATCATTATTTTAATATTCCTTTCATTAACTTTAATTTATGTAATTGCTGAAGTTCAACTAATAGTTTATACTCTGTCTAGTTTAATAATCGCATGAAAGTGCAACAGGCGAGTGCTATGTAATTTCATCAACTTTACCATGATATATTTTCTGCAACAAAACTTTGTTGAACTTGTGCAAAAACTTAATGAGTTTACTATAGGGGATCTTGCTTTGTTCTTTCTAATACGCCATGTCAAAGAATAGTTATTTAAGTGCACGCACATCAAATGCCCTTTTTCAGCTAGTTGGTGCACAATTCTCACTTTGACTAAACCAGACCCCACTTGTGTGATTTCAATGAGTATATCGTTGGTGTTATACTTGGCAAGCCATCCTCAAAGCAGCTCAATAGCAGTGGATCTGAGTTCATTCATTCTAGGAAGTATGAAGTATAGGGGATGGAACTTGGTATTTTTTTAATAAAGACTAATCCATTCGTAATATGATGTTTACTGGGAAGACAGAAGTCTTCCTTTTCCTGTAAGTTAACGAAAACGTATGTTTGATCTTTTTTTTCTCTTGGTACCTCTGCATGTGGATGCCTGTTACATTAGAAATCTGATGAATTCATTCTCTATGATATTAACCTTGTGCAAAGATGGGGAAAAACTGCCAAATAGGCTTTTAGTAATTGCTATCTCTGTTATAAAGTGCACATCCATCTGAATCGTTTTTGTGTATTCCAGGCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGGGTATGTCCAGCTTTCTCCCTCTTTTATGCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGAAAAAAGAAAAGGAGTGTTTTTACATGCAAAATCTAATGCTCAAATTTTTCCTCTGCAGTGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTT-GATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGG</genome_strand>
        <mrna_strand>CAATATGTACTATAGTTTGTGACATAGGAAAGTGAAGGGTCTGCATGAGCTCTAGCTGGTTAATGAAGTCATGTTTAAAATAATTCCTTGCTATGATCTATGCCATACAGATTCTCATTATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAG................................................................................................................................ATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTCTTCTCACAAGCAGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTTTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACCGCATCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA...........................................................................................TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG....................................................................................................................GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG........................................................................................................................TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGAGCAGCTCAGACAGCAATGAGCATGCCAATGGGTGGGGCAACAGCTTTTCCAAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGAATTCCCAGCGAGTGTTTGTTATTAAAAAACATGTTTCGATCCTGCAACTGAG........................................................................................................................ACGGAGCCAGAATTTGATTTGGATATTAAAGATGATGTGAAGGAGGAATGTTCGAAGTATGGCAGGGTCAAGCATATCCACGTGGACAA........................................................................................................................................................................................GAACACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGATCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCATATGAATATGATGCCAAGTTCAAAGGTACAGGCTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_marker_seqs" ref_id="T1900" ref_strand="+" ref_description="T1900">
      <seq>tttgtactcttgccaaatttgggagtataaagtggaaacccggtttagggagtctggttttagggtcgggtgattacgatggagtggttatggagtgtgacctagagaaaaaaatgcccgttttcgagcgtgatgagcatggtggtagacgggtttggagcattgactattgtcagtcggatccggttttgggtgcatccggatccgatgacggaaccatgcaaatgtgggacccgcggtgcggtgacagtggcaagtgtttagctatggtacaacctaccaaagggtatagtacacccgtgtgttgcgtcgaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttctttgagcatagatggttgtttaaaaatgtggaatgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="90450" stop="91560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90750" g_stop="91260" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="T1900" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="T1900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90750" e_stop="91260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</genome_strand>
        <mrna_strand>TTTGTACTCTTGCCAAATTTGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCTGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTGTGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTTGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2IgYlx/sgn_marker_seqs" ref_id="T0291" ref_strand="+" ref_description="T0291">
      <seq>ttagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-ZkZ5N/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0168B23.1" temp_strand="+" temp_description="C11HBa0168B23.1  AC212438.1 htgs_phase:1 submitted_to_sgn_as:C11HBa0168B23 sequenced_by:ivf-caas">
        <position start="116775" stop="120163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117075" g_stop="117142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118482" g_stop="118573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="160" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118733" g_stop="118841" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="269" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118924" g_stop="118959" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="305" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119769" g_stop="119855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119936" g_stop="119951" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="408" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.1" gen_strand="+" ref_id="T0291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.1" gen_strand="+"/>
        <rDNA rDNA_id="T0291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117075" e_stop="117142"/>
          <exon e_start="118482" e_stop="118573"/>
          <exon e_start="118733" e_stop="118841"/>
          <exon e_start="118924" e_stop="118959"/>
          <exon e_start="119769" e_stop="119855"/>
          <exon e_start="119936" e_stop="119951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGG</genome_strand>
        <mrna_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19827" PGL_stop="20841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19827" e_stop="20373"/>
            <exon e_start="20471" e_stop="20684"/>
            <exon e_start="20793" e_stop="20841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.345" acc_prob="0.956" e_score="0.982"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="0.972"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="19827" e_stop="20373" e_length="547"/>
          </exon>
          <intron i_serial="1" don_prob="0.345" acc_prob="0.956">
            <gDNA_intron_boundary i_start="20374" i_stop="20470" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="20471" e_stop="20684" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20685" i_stop="20792" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="20793" e_stop="20841" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19827" stop="20373"/>
              <exon start="20471" stop="20684"/>
              <exon start="20793" stop="20841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g54460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG : GTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG : GATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTT</gDNA_template>
            <first_frame> L  Q  T  P  P  V  A  S  F  L  I  C  N  P  C  L  S  F  S  M  M  K  L  M  D  R  I  R  K  P  G  K  L  V  F  S  S  H  S  K  Q  R  W  K  R  V  G  H  V  C  Y  S  Y  F  T  G  A  *  S  V  P  G  K  K  I  C  R  I  F  L  L  A  S  R  K  *  H  S  *  I  L  L  K  N  M  Q  E  L  I  M  N  W  *  K  P  C  G  E  T  Y  *  W  Q  T  G  M  I  L  L  M  L  R  V  Y  *  T  L  N  N  G  N  S  E  V  Q  P  S  E  M  *  D  F  R  A  V  *  Q  D  I  S  E  *  Q  R  Q  V  M  I  F  K  K  L  W  I  S  *  L  R  M  V  W  I  P  L  Q  R  S  M  V  *  *  N  I  T  F  Y  L  V  E  T  A  *   : G  V  K  H  G  A  V  Y  Q  *  L  H  L  V  N  I  Y  Y  A  L  T  V  F  L  *  I  A  R  S  V  Q  F  L  A  V  V  T  C  M  R  C  K  V  L  K  H  W  P  V  L  K  I  Q  I  Q  S  G  P  F  Q  R  I  *  L  S  C  N  H  L  I  N  R :   M  T  G  I  P  I  G  N  Q  H  L  A  V  K  L  L </first_frame>
            <second_frame>  S  K  H  P  Q  *  P  A  F  S  S  A  T  L  A  *  V  S  P  *  *  N  L  W  T  E  S  E  S  L  G  S  W  Y  S  Q  A  I  R  S  R  D  G  R  G  S  V  T  F  A  T  V  T  S  Q  V  H  D  Q  C  Q  E  K  R  F  A  E  Y  S  S  L  H  Q  E  S  N  T  L  K  F  Y  *  R  T  C  K  N  L  *  *  I  G  R  N  R  A  E  K  H  T  N  G  R  L  E  *  S  F  S  C  *  E  F  T  E  P  *  T  M  E  I  P  K  Y  N  H  Q  K  C  K  T  F  V  L  C  S  R  T  Y  Q  S  N  R  G  R  *  *  Y  S  R  N  Y  G  Y  L  S  *  G  W  S  G  S  H  F  R  G  V  W  S  D  K  I  S  H  F  I  W  W  K  L  H  E  :  V  *  S  M  V  P  S  T  S  D  Y  T  L  *  T  S  I  M  P  *  L  C  F  F  R  *  R  E  V  Y  N  F  W  L  W  *  L  V  *  D  A  K  S  *  N  T  G  P  S  *  K  S  K  S  K  V  A  R  S  K  G  S  D  *  V  A  T  I  L  *  T   : G  *  L  E  S  R  L  A  I  N  I  *  Q  *  S  C   </second_frame>
            <third_frame>   P  N  T  P  S  S  Q  L  S  H  L  Q  P  L  L  K  F  L  H  D  E  T  Y  G  Q  N  Q  K  A  W  E  A  G  I  L  K  P  F  E  A  E  M  E  E  G  R  S  R  L  L  Q  L  L  H  R  C  M  I  S  A  R  K  K  D  L  Q  N  I  P  P  C  I  K  K  V  T  L  L  N  F  T  E  E  H  A  R  T  Y  N  E  L  V  E  T  V  R  R  N  I  L  M  A  D  W  N  D  P  S  H  V  E  S  L  L  N  P  K  Q  W  K  F  R  S  T  T  I  R  N  V  R  L  S  C  C  V  A  G  H  I  R  V  T  E  A  G  D  D  I  Q  E  T  M  D  I  L  V  E  D  G  L  D  P  T  S  E  E  Y  G  L  I  K  Y  H  I  L  F  G  G  N  C  M  R :   C  K  A  W  C  R  L  P  V  I  T  P  C  K  H  L  L  C  L  D  C  V  S  L  D  S  E  K  C  T  I  S  G  C  G  N  L  Y  E  M  Q  S  P  E  T  L  A  R  P  E  N  P  N  P  K  W  P  V  P  K  D  L  I  E  L  Q  P  S  Y  K  Q  :  D  D  W  N  P  D  W  Q  S  T  S  S  S  K  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19829" stop="20373"/>
                    <exon start="20471" stop="20684"/>
                    <exon start="20793" stop="20840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNTPSSQLSHLQPLLKFLHDETYGQNQKAWEAGILKPFEAEMEEGRSRLLQLLHRCMISARKKDLQNIPPCIKKVTLLNFTEEHARTYNELVETVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIRVTEAGDDIQETMDILVEDGLDPTSEEYGLIKYHILFGGNCMRCKAWCRLPVITPCKHLLCLDCVSLDSEKCTISGCGNLYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="77141" PGL_stop="84099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77141" e_stop="77355"/>
            <exon e_start="77484" e_stop="77540"/>
            <exon e_start="78010" e_stop="78065"/>
            <exon e_start="79477" e_stop="79705"/>
            <exon e_start="80147" e_stop="80233"/>
            <exon e_start="80325" e_stop="80399"/>
            <exon e_start="80516" e_stop="80599"/>
            <exon e_start="82612" e_stop="82676"/>
            <exon e_start="82797" e_stop="82986"/>
            <exon e_start="83107" e_stop="83195"/>
            <exon e_start="83380" e_stop="83494"/>
            <exon e_start="84054" e_stop="84099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.916"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.987"/>
          <exon-intron don_prob="0.963" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.953"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="0.955"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="0.983"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="77141" e_stop="77355" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77356" i_stop="77483" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="77484" e_stop="77540" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77541" i_stop="78009" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78010" e_stop="78065" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78066" i_stop="79476" i_length="1411"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="79477" e_stop="79705" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79706" i_stop="80146" i_length="441"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80147" e_stop="80233" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80234" i_stop="80324" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80325" e_stop="80399" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80400" i_stop="80515" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80516" e_stop="80599" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80600" i_stop="82611" i_length="2012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82612" e_stop="82676" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.360" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82677" i_stop="82796" i_length="120"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="82797" e_stop="82986" e_length="190"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82987" i_stop="83106" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="0.955">
            <gDNA_exon_boundary e_start="83107" e_stop="83195" e_length="89"/>
          </exon>
          <intron i_serial="10" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="83196" i_stop="83379" i_length="184"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="83380" e_stop="83494" e_length="115"/>
          </exon>
          <intron i_serial="11" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83495" i_stop="84053" i_length="559"/>
          </intron>
          <exon e_serial="12" e_score="0.957">
            <gDNA_exon_boundary e_start="84054" e_stop="84099" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77141" stop="77355"/>
              <exon start="77484" stop="77540"/>
              <exon start="78010" stop="78065"/>
              <exon start="79477" stop="79705"/>
              <exon start="80147" stop="80233"/>
              <exon start="80325" stop="80399"/>
              <exon start="80516" stop="80599"/>
              <exon start="82612" stop="82676"/>
              <exon start="82797" stop="82986"/>
              <exon start="83107" stop="83195"/>
              <exon start="83380" stop="83494"/>
              <exon start="84054" stop="84099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g09880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATATGTTCTATAGTGTGACATAAGAAAGTGAAGGGTCATGAGCTCTAGCTGGTTAATAAATTCATGTTTAAAACAATTTTTTGCTATGATCTATGCCATACAGATTCTCATCATGGTCTGAGTCATTTATACAGGAGATTCAAGGAGAAGAAAGAAAAAATAGAACCAGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCTTACCAG : ATGCCCTTGAAGGCGACTGAAAGGGATGTGTATGAGTTTTTCTCACAAGCAGGAAAG : GTGAGGGATGTGCGGTTAATCATGGACCGGAATTCAAGGCGATCTAAAGGAGTTGG : GTACATTGAGTTTTATGATGCTATGTCCGTGCCAATGGCTATTGCTTTATCTGGTCGCTTGCTCTTTGGCCAACCAGTAATGGTAAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCAACTGCGTCTGGTGGTGGATCAGGGTTGGCGGGGCCAAATGCTGCCTCAGAAAGAAAACTTTATGTTGGAAATCTTCACTTTAACATGACAGAATTGCAGCTTAGACAG : ATTTTTGAAGCTTTTGGGCCAGTGGAGCTTGTTCAATTACCTACAGATCCTGAAACAGGACATTGCAAAGGATTTGGGTTTGTCCAA : TTTGCTCAACTTGAACATGCTAAGGCGGCTCAAAGTTTGAATGGTAAGCTTGAGATTGCGGGTCGGACCATCAAG : GTTTCATCCGTTACTGAACATGTTGGAGTACAAGATGCTGGAGCTAAAACTGCAGACTTTGATGATGATGAAGGGGGTGGCCTG : GCATTGAATGCTCAGTCAAGGGCCATGCTTATGGCAAAATTGGACCGCAGTGGTGTTGCTTCAGG : TGTTGCGGGTACACTAGGAGTTCCTGCACTTAATGGTGCAGCTCAGCCAGCAATGAGCATGCCAATGGGTGGAGCAACAGCTTTTCAGAATATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGG</gDNA_template>
            <first_frame> Q  Y  V  L  *  C  D  I  R  K  *  R  V  M  S  S  S  W  L  I  N  S  C  L  K  Q  F  F  A  M  I  Y  A  I  Q  I  L  I  M  V  *  V  I  Y  T  G  D  S  R  R  R  K  K  K  *  N  Q  K  L  I  Q  K  G  T  R  E  L  F  L  L  T  R :   C  P  *  R  R  L  K  G  M  C  M  S  F  S  H  K  Q  E  R :   *  G  M  C  G  *  S  W  T  G  I  Q  G  D  L  K  E  L   : G  T  L  S  F  M  M  L  C  P  C  Q  W  L  L  L  Y  L  V  A  C  S  L  A  N  Q  *  W  *  N  L  L  K  L  K  R  T  L  F  S  Q  L  R  L  V  V  D  Q  G  W  R  G  Q  M  L  P  Q  K  E  N  F  M  L  E  I  F  T  L  T  *  Q  N  C  S  L  D  R :   F  L  K  L  L  G  Q  W  S  L  F  N  Y  L  Q  I  L  K  Q  D  I  A  K  D  L  G  L  S  N :   L  L  N  L  N  M  L  R  R  L  K  V  *  M  V  S  L  R  L  R  V  G  P  S  R :   F  H  P  L  L  N  M  L  E  Y  K  M  L  E  L  K  L  Q  T  L  M  M  M  K  G  V  A  W :   H  *  M  L  S  Q  G  P  C  L  W  Q  N  W  T  A  V  V  L  L  Q   : V  L  R  V  H  *  E  F  L  H  L  M  V  Q  L  S  Q  Q  *  A  C  Q  W  V  E  Q  Q  L  F  R  I  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W </first_frame>
            <second_frame>  N  M  F  Y  S  V  T  *  E  S  E  G  S  *  A  L  A  G  *  *  I  H  V  *  N  N  F  L  L  *  S  M  P  Y  R  F  S  S  W  S  E  S  F  I  Q  E  I  Q  G  E  E  R  K  N  R  T  R  S  *  S  R  K  G  P  E  N  C  F  C  L  P   : D  A  L  E  G  D  *  K  G  C  V  *  V  F  L  T  S  R  K   : G  E  G  C  A  V  N  H  G  P  E  F  K  A  I  *  R  S  W  :  V  H  *  V  L  *  C  Y  V  R  A  N  G  Y  C  F  I  W  S  L  A  L  W  P  T  S  N  G  K  T  F  *  S  *  K  E  P  C  S  V  N  C  V  W  W  W  I  R  V  G  G  A  K  C  C  L  R  K  K  T  L  C  W  K  S  S  L  *  H  D  R  I  A  A  *  T   : D  F  *  S  F  W  A  S  G  A  C  S  I  T  Y  R  S  *  N  R  T  L  Q  R  I  W  V  C  P   : I  C  S  T  *  T  C  *  G  G  S  K  F  E  W  *  A  *  D  C  G  S  D  H  Q   : G  F  I  R  Y  *  T  C  W  S  T  R  C  W  S  *  N  C  R  L  *  *  *  *  R  G  W  P   : G  I  E  C  S  V  K  G  H  A  Y  G  K  I  G  P  Q  W  C  C  F  R  :  C  C  G  Y  T  R  S  S  C  T  *  W  C  S  S  A  S  N  E  H  A  N  G  W  S  N  S  F  S  E  Y  A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D   </second_frame>
            <third_frame>   I  C  S  I  V  *  H  K  K  V  K  G  H  E  L  *  L  V  N  K  F  M  F  K  T  I  F  C  Y  D  L  C  H  T  D  S  H  H  G  L  S  H  L  Y  R  R  F  K  E  K  K  E  K  I  E  P  E  A  D  P  E  R  D  Q  R  T  V  F  A  Y  Q  :  M  P  L  K  A  T  E  R  D  V  Y  E  F  F  S  Q  A  G  K  :  V  R  D  V  R  L  I  M  D  R  N  S  R  R  S  K  G  V  G :   Y  I  E  F  Y  D  A  M  S  V  P  M  A  I  A  L  S  G  R  L  L  F  G  Q  P  V  M  V  K  P  S  E  A  E  K  N  L  V  Q  S  T  A  S  G  G  G  S  G  L  A  G  P  N  A  A  S  E  R  K  L  Y  V  G  N  L  H  F  N  M  T  E  L  Q  L  R  Q  :  I  F  E  A  F  G  P  V  E  L  V  Q  L  P  T  D  P  E  T  G  H  C  K  G  F  G  F  V  Q  :  F  A  Q  L  E  H  A  K  A  A  Q  S  L  N  G  K  L  E  I  A  G  R  T  I  K  :  V  S  S  V  T  E  H  V  G  V  Q  D  A  G  A  K  T  A  D  F  D  D  D  E  G  G  G  L  :  A  L  N  A  Q  S  R  A  M  L  M  A  K  L  D  R  S  G  V  A  S  G :   V  A  G  T  L  G  V  P  A  L  N  G  A  A  Q  P  A  M  S  M  P  M  G  G  A  T  A  F  Q  N  M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77191" stop="77355"/>
                    <exon start="77484" stop="77540"/>
                    <exon start="78010" stop="78065"/>
                    <exon start="79477" stop="79705"/>
                    <exon start="80147" stop="80233"/>
                    <exon start="80325" stop="80399"/>
                    <exon start="80516" stop="80599"/>
                    <exon start="82612" stop="82676"/>
                    <exon start="82797" stop="82986"/>
                    <exon start="83107" stop="83195"/>
                    <exon start="83380" stop="83494"/>
                    <exon start="84054" stop="84095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVNKFMFKTIFCYDLCHTDSHHGLSHLYRRFKEKKEKIEPEADPERDQRTVFAYQMPLKATERDVYEFFSQAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGRLLFGQPVMVKPSEAEKNLVQSTASGGGSGLAGPNAASERKLYVGNLHFNMTELQLRQIFEAFGPVELVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTEHVGVQDAGAKTADFDDDEGGGLALNAQSRAMLMAKLDRSGVASGVAGTLGVPALNGAAQPAMSMPMGGATAFQNMLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="90750" PGL_stop="91260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90750" e_stop="91260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="90750" e_stop="91260" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90750" stop="91260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</gDNA_template>
            <first_frame> F  V  L  R  P  N  S  G  V  *  S  G  N  P  V  *  G  V  G  F  *  G  R  V  I  T  M  E  W  L  W  S  M  T  *  R  K  K  C  P  F  S  S  V  M  S  M  V  V  D  G  F  G  A  L  T  I  V  S  R  I  R  F  W  V  H  P  D  P  M  T  E  P  C  K  C  G  T  R  G  A  V  T  V  A  S  V  *  L  W  Y  N  L  P  K  G  I  V  H  P  C  V  A  S  N  L  I  R  S  K  V  Q  S  *  P  L  D  A  L  T  G  G  S  T  R  M  I  *  G  K  C  L  T  H  S  L  S  W  M  D  M  R  K  Q  L  L  T  L  D  L  L  M  N  V  L  L  F  L  R  A  *  M  V  V  *  K  C  G  M  R  </first_frame>
            <second_frame>  L  Y  S  G  Q  T  R  E  Y  K  V  E  T  R  F  R  E  S  G  F  R  V  G  *  L  R  W  S  G  Y  G  V  *  P  R  E  K  N  A  R  F  R  A  *  *  A  W  W  *  T  G  L  E  H  *  L  L  S  V  G  S  G  F  G  C  I  R  I  R  *  R  N  H  A  N  V  G  P  A  V  R  *  Q  W  Q  V  F  S  Y  G  T  T  Y  Q  R  V  *  Y  T  R  V  L  R  R  I  *  S  V  Q  R  S  N  R  S  R  W  M  R  *  P  E  G  L  R  V  *  Y  E  E  N  A  *  P  T  L  C  P  G  W  T  *  E  S  S  Y  L  H  *  I  C  *  *  T  Y  Y  Y  F  F  E  H  R  W  L  F  K  N  V  E  C  G </second_frame>
            <third_frame>   C  T  P  A  K  L  G  S  I  K  W  K  P  G  L  G  S  R  V  L  G  S  G  D  Y  D  G  V  V  M  E  Y  D  L  E  K  K  M  P  V  F  E  R  D  E  H  G  G  R  R  V  W  S  I  D  Y  C  Q  S  D  P  V  L  G  A  S  G  S  D  D  G  T  M  Q  M  W  D  P  R  C  G  D  S  G  K  C  L  A  M  V  Q  P  T  K  G  Y  S  T  P  V  C  C  V  E  F  N  P  F  K  G  P  I  V  A  V  G  C  A  D  R  R  V  Y  A  Y  D  M  R  K  M  L  D  P  L  F  V  L  D  G  H  E  K  A  V  T  Y  I  R  F  V  D  E  R  T  I  I  S  S  S  I  D  G  C  L  K  M  W  N  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90752" stop="91258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTPAKLGSIKWKPGLGSRVLGSGDYDGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCQSDPVLGASGSDDGTMQMWDPRCGDSGKCLAMVQPTKGYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMLDPLFVLDGHEKAVTYIRFVDERTIISSSIDGCLKMWNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="117075" PGL_stop="119951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117075" e_stop="117142"/>
            <exon e_start="118482" e_stop="118573"/>
            <exon e_start="118733" e_stop="118841"/>
            <exon e_start="118924" e_stop="118959"/>
            <exon e_start="119769" e_stop="119855"/>
            <exon e_start="119936" e_stop="119951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117075" e_stop="117142" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="117143" i_stop="118481" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118482" e_stop="118573" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="118574" i_stop="118732" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118733" e_stop="118841" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.945">
            <gDNA_intron_boundary i_start="118842" i_stop="118923" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118924" e_stop="118959" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118960" i_stop="119768" i_length="809"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119769" e_stop="119855" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="119856" i_stop="119935" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119936" e_stop="119951" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117075" stop="117142"/>
              <exon start="118482" stop="118573"/>
              <exon start="118733" stop="118841"/>
              <exon start="118924" stop="118959"/>
              <exon start="119769" stop="119855"/>
              <exon start="119936" stop="119951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTGAGG</gDNA_template>
            <first_frame> L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   Y  V  S  *  T  *  F  S  I  F  T  R :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L  R </first_frame>
            <second_frame>  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  M  *  A  R  L  N  F  Q  F  S  Q   : G  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G  *   </second_frame>
            <third_frame>   S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  V  C  E  L  D  L  I  F  N  F  H  K  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117077" stop="117142"/>
                    <exon start="118482" stop="118573"/>
                    <exon start="118733" stop="118841"/>
                    <exon start="118924" stop="118959"/>
                    <exon start="119769" stop="119855"/>
                    <exon start="119936" stop="119950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELVIAGELQESSKKTVARLIAAQDSLVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 9520 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2380 bytes was the average size of a spliced alignment
$ 9632 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2408 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:51:37
-->
