<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:47:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E347855" ref_strand="+" ref_description="SGN-E347855 	[cTOF-31-A13]">
      <seq>tcatttccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcaggttgataaagtgcttcaacctatgagtatctttgctgctccggctccggcaatggcaccgactccggcaacgttgaaaccaaagagcaagtctccggcaggattgaaccctacctccggcaacgacgacttgccggcggcggatgaattccggtgttgagaggattgccatgcacggcacaacgggntttgttttttggaatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="24080" stop="21599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23780" g_stop="23234" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23233" i_stop="22105" i_length="1129">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22104" g_stop="21899" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="755" r_length="208" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E347855" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23780" e_stop="23234"/>
          <exon e_start="22104" e_stop="21899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATG-ATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAAC-GGTTTTGTTTTTTGGAATTTCTTT</genome_strand>
        <mrna_strand>TCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGAATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGGNTTTGTTTTTTGGAATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E341604" ref_strand="+" ref_description="SGN-E341604 	[cTOE-23-I9]">
      <seq>aagaactacatcatttccttcttgaattttttttattttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcaggttgataaagtgcttcaacctatgagtatctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="24090" stop="21769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23790" g_stop="23234" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23233" i_stop="22105" i_length="1129">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22104" g_stop="22069" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="594" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E341604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23790" e_stop="23234"/>
          <exon e_start="22104" e_stop="22069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTA-TTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCT</genome_strand>
        <mrna_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E346132" ref_strand="+" ref_description="SGN-E346132 	[cTOF-34-M9]">
      <seq>gaaactacatcatttccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcangttgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="24087" stop="22932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23789" g_stop="23234" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E346132" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23789" e_stop="23234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG</genome_strand>
        <mrna_strand>GAAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E268794" ref_strand="+" ref_description="SGN-E268794 	[cLEM-4-D17]">
      <seq>aatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagatattagcaggtctattgagtccatatgatggtttcttgtatgtggagaggccaaggagctttgtgtatcagaatcctgatcatcaggtcgtgatgccaacagtggaagctgatgtcgcttttggtcttggtaaattgaacttaacaccaaatgagattaagactagggtggcaaaagctttggatgcagttgggatgtatgaatattttaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="30648" stop="27166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30348" g_stop="30206" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30108" g_stop="29934" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="318" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29933" i_stop="29081" i_length="853">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29080" g_stop="28994" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="405" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28993" i_stop="27592" i_length="1402">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27591" g_stop="27466" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E268794" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30348" e_stop="30206"/>
          <exon e_start="30108" e_stop="29934"/>
          <exon e_start="29080" e_stop="28994"/>
          <exon e_start="27591" e_stop="27466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAGGTATATATATCTAGGACCATTGTTTTTTGGTTGTTAGTATGTTAGAATAGATACGAATGTGTGGAGGTCGAGGATTAGCTTAGAAGACTAGTAGTAGGTAATTTCGCCTTTTTTTAAACCAGCAGTTTTAGTATTATTTGGGAAGATGTGATTATACATGACATGTCGCAGTTGAAGGTTATCGAGTATATGACATATGGAGATTGTGGATTACATAGATTAAGTTAGAACTTAGAAGTATAGCTAGTGGTTTAGCTTTTTCTCGCTTATCCTTCCGTACTAGTAGTCGTAGTAATTTTCCTGTAGTTTCTTGTCCTTCGATATATGTTAGTTACTTTCTATTGTCTCTTGTACTTTGATCATCACACTATTTTATTGTAGTTTATTTTTTTTGTTTGTGATGCTTTTTATAGTATCTTCTTCGATATGTTTTTTCATGAGCAGAGGGTCTATTGGATAAAACTTCTCTACCTCCCAAGGTAGAGGTAAGGTCTGCTTACACTCTACCTTCCCGAGCCCCACTTTTGGTATTATATTTGGGTATTTTAATGTATTTTTGTTATTTTATTATTTTCGTATTTCTCATTCTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCTTTGATTTTTTCTTACTATCTTGCTGTTGTTACTACTTATGTTTTCATCAATGTTGTGTTTATATTTTTGTTGCTCCGAGGGTCTATCAGAAACTACCTATTTACCTGCACAAGGTAAGGGTAAGGTTTGCCTACCCTCGCCAAACCCCACTTGTGGAATTACATTGGTATGTTGTTGTAGTTTGTCAGAATTAATGGGTTTTGTTCTTTTTTTGGGTGAAATTGTTTCAGATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAGGTGTACTTACTTGAAGCAATTTTCAGTTTTTTCGTTTTAAGTTGCCTTTAGGCTTTAGAGGGTAATGCTGCCTAATTATCAGTCGTCTTCGGATTTGTGGCCCTCTTTTGTGGGTTAAATTGGATGATTAAGCGAGAATGTTTGGATTCCCGTGTTGTGCTGATGAATGAATTGTAAGATTAATGGTGTAAAATTCGAGATTCAAGATACTTATCACAACAACAACAACAACAACAACTTATACACCTCAATTCCAATCTAGTCTGCCAGCTATATAAATCTTCACTATCCATGTCACTCTATTTAAACTCGTCTCGATCCAATCTTTGAAAAAAAAAGGGATTCCTATCAAACCAATTCAATAACTGAGAATTGGAGTTTAATGGAATCACTGCGAATGCATGTAAAACACTAGGGGAACCTAAAGATGTTGCCTAATGGTCAATTAAGAGGGTGAAAACCACGGAAGATAAGTTCAAAAATGAGCATAGACCAAAAAGAAGGCCTAGGTGATCTTTTTTCCTTTGCTTAAGCCAACGAGTTACTAGGTACCTGTGATGGTGTGAAATAACATGTACCTAGTGAAATAGTCGAGATGCGTATAAGTTGGCTCAGACACTGACATTATCACAAAGAGAATGTAAATCATGAGTGAACTACAAAAGATTGAGTGCTTCATCTTGTATAAGCTTGATTTCATATCAGAGAATCAAGTCCCCTTGATAACTATCCTACTGATGTAATTATGCTTTTGGGTTTTCTTGCTTTTGTTGAACTATATCTCAGTCGAGTTTAGATTTGGAAAGATCATACTTTTGAAGAAATTAGGCAATTTGCCATCATAAGGACTAAAATGTCATTATAGAACTTCTATTGTAGCCCTGTAAGTAGGCAGAATCTGGAAAGTTCTTAACTTTATACATCCGTATTGCTGATTATACTGGTTTGTAACTCTGCATGTCCATTACTTTGGGTTGATAGTGCAGTTTATCCATCTTTGTAAAACCTCCAGAATATGTGGTTGCAAAGTCCTCATCATTTTAGCTTTGCACTCATGAGTCATTTAGTAGCACAAGTGTCTGTCATGATTCCAAACTCTGCATTTACTGATTCGAGAATGCGAATCTATAGAGTTTTTATTACATTGGCCCATTTATTTTTTGTATGGTAATTCTACAAGGCTTCTTATCATAGACTCACATGCTTTTGGCATGATGAGTTCACGAGGTCTCTGCAAAACAGATGTTGTGCTTGGTGCGGCTAAAGCAGAGAGCCACATATGCCGTTATTTGTTATGTTATTTTGCCTGGATCGCTGGATGGTTTTTATGAATTGGACTTTCCATGACCACATATTATTCTGCTCTGAAATGCATGGCCTTCTTTATTTTTTGTGTTTACAGGTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</genome_strand>
        <mrna_strand>AATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGCAGGTCTATTGAGTCCATATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E282312" ref_strand="+" ref_description="SGN-E282312 	[cLER-18-E1]">
      <seq>acatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="30655" stop="29630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30355" g_stop="30206" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30108" g_stop="29934" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="325" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29933" i_stop="29884" i_length="50">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29883" g_stop="29879" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="330" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E282312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30355" e_stop="30206"/>
          <exon e_start="30108" e_stop="29934"/>
          <exon e_start="29883" e_stop="29879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAGGTATATATATCTAGGACCATTGTTTTTTGGTTGTTAGTATGTTAGAATAGATACG</genome_strand>
        <mrna_strand>ACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG..................................................ATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E302237" ref_strand="+" ref_description="SGN-E302237 	[cLEW-19-K6]">
      <seq>gggagagattagcctcatcccctcccctcttattagtattagtagttttttctgatttctacttaacataagcgtgattaaatttaaattcaagctaacaaagtttacatgaattgataaatgctttcgaacatgtgcactttatacggacggaaaatagtagttactaatcactaaactttgctagctacctttactacgatagcaataaagttttttcgtgtttcaatttatttgacactcttattccgaacaccttcacataaaaaacatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="30925" stop="29631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30624" g_stop="30206" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30108" g_stop="29934" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="594" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E302237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30624" e_stop="30206"/>
          <exon e_start="30108" e_stop="29934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG</genome_strand>
        <mrna_strand>GGGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E302314" ref_strand="+" ref_description="SGN-E302314 	[cLEW-19-H24]">
      <seq>gggagagattagcctcatcccctcccctcttattagtattagtagttttttctgatttctacttaacataagcgtgattaaatttaaattcaagctaacaaagtttacatgaattgataaatgctttcgaacatgtgcactttatacggacggaaaatagtagttactaatcactaaactttgctagctacctttactacgatagcaataaagttttttcgtgtttcaatttatttgacactcttattccgaacaccttcacataaaaaacatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="30925" stop="29661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30624" g_stop="30206" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30108" g_stop="29961" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="567" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E302314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30624" e_stop="30206"/>
          <exon e_start="30108" e_stop="29961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAAT</genome_strand>
        <mrna_strand>GGGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E245608" ref_strand="+" ref_description="SGN-E245608 	[cLEF-43-H21]">
      <seq>cttatttgttcatataaggattgggccttatgtttgtgcagaatggaactatggtgggtttcctctttggttgcatttcattcctggaattgaatttcgaaccgacaatgaaccgttcaaggctgaaatgaagcgattcacagctaaaattgttgacatgatcaagcaagaaaatctatatgcatcccagggtgggccggttatcttgtctcagatagaaaatgagtatggcaatggtgatattgagtctcgttatggtcctcgtgccaaaccttacgtgaactgggcagcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaagcggaactttccagaaactattacatgtaccacgggggaactaactttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="39566" stop="41380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39866" g_stop="39919" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39920" i_stop="40009" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40010" g_stop="40076" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="121" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40077" i_stop="40157" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40158" g_stop="40250" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="214" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40251" i_stop="40358" i_length="108">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40359" g_stop="40508" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="364" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40509" i_stop="40654" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40655" g_stop="40743" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="453" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40744" i_stop="40852" i_length="109">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40853" g_stop="40958" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="560" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40959" i_stop="41054" i_length="96">
            <donor d_prob="0.738" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41055" g_stop="41080" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="586" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E245608" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39866" e_stop="39919"/>
          <exon e_start="40010" e_stop="40076"/>
          <exon e_start="40158" e_stop="40250"/>
          <exon e_start="40359" e_stop="40508"/>
          <exon e_start="40655" e_stop="40743"/>
          <exon e_start="40853" e_stop="40958"/>
          <exon e_start="41055" e_stop="41080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGGGTAACTAACTCTTATACTTTTTTTGCTTTTCTCAAATATTAATGTTTTTGCTTTACTGATAATTGATGGTTTTGATCTATTTTGAGACAGTGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAGGTATTCCCATTTGTGCTATTAATTAGTTTTTCCTTGGGATACTGGTTTTGGAGTTCATGACACGAGGGATTTGTGTTGCAGGCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAGGTTAGCATCTTGTAGTGATTCACTACATTCGGAGTACTAAGAAACAAGTTGATATTAGTTGCTCTTTGTTATTGTTTGAGTAGTAAAGATGCTTTGTTGACCAAACAGATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAG-AACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAG</genome_strand>
        <mrna_strand>CTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG..........................................................................................TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG.................................................................................GCTGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG............................................................................................................ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAAGCGGAACTTTCCAGAAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E336421" ref_strand="+" ref_description="SGN-E336421 	[cTOE-4-K9]">
      <seq>agcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaggcggaactttccagaactattacatgtaccacgggggaactaactttgggagaaccagtggtggaccgtttattgcaactagctatgactatgatgctcctttagatgagtacgggcttataaatcaaccaaaatggggtcacttgaaagatctccataaagccataaagctttgtgaggctgcaatggtggcaacagaaccaaacatcacttctctgggctctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="40133" stop="41651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40433" g_stop="40508" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40509" i_stop="40654" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40655" g_stop="40743" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="165" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40744" i_stop="40852" i_length="109">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40853" g_stop="40958" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40959" i_stop="41054" i_length="96">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41055" g_stop="41142" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41143" i_stop="41236" i_length="94">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41237" g_stop="41351" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="474" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E336421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40433" e_stop="40508"/>
          <exon e_start="40655" e_stop="40743"/>
          <exon e_start="40853" e_stop="40958"/>
          <exon e_start="41055" e_stop="41142"/>
          <exon e_start="41237" e_stop="41351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACGGTATGGTTCCTCACCCTCTTGACCAATCTTTATTTTCCTAGCTTGTTGTGGGCTTATCATTTCACTAGGTGAAAATCTCCATTGCGAAATGCAGGGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</genome_strand>
        <mrna_strand>AGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG..............................................................................................GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E343951" ref_strand="+" ref_description="SGN-E343951 	[cTOF-12-I19]">
      <seq>taatatagaggtcagtgtttataaaactgattcacagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggnggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactntacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="41520" stop="43408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41822" g_stop="41983" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="172" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41984" i_stop="42069" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42070" g_stop="42266" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="370" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42267" i_stop="42425" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42426" g_stop="42535" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="480" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42536" i_stop="42812" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42813" g_stop="42922" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="590" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42923" i_stop="43086" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43087" g_stop="43108" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="612" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E343951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41822" e_stop="41983"/>
          <exon e_start="42070" e_stop="42266"/>
          <exon e_start="42426" e_stop="42535"/>
          <exon e_start="42813" e_stop="42922"/>
          <exon e_start="43087" e_stop="43108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGG-GGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATC</genome_strand>
        <mrna_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGNGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTNTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E326382" ref_strand="+" ref_description="SGN-E326382 	[cTOC-14-G1]">
      <seq>tggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggtgaatgaaaatgcattcacgagaatcaggttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="41605" stop="43496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41905" g_stop="41983" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41984" i_stop="42069" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42070" g_stop="42117" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="127" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42118" i_stop="42180" i_length="63">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42181" g_stop="42266" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="210" r_length="83" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42267" i_stop="42425" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42426" g_stop="42535" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="320" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42536" i_stop="42812" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42813" g_stop="42922" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="430" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42923" i_stop="43086" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43087" g_stop="43196" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="540" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E326382" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41905" e_stop="41983"/>
          <exon e_start="42070" e_stop="42117"/>
          <exon e_start="42181" e_stop="42266"/>
          <exon e_start="42426" e_stop="42535"/>
          <exon e_start="42813" e_stop="42922"/>
          <exon e_start="43087" e_stop="43196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</genome_strand>
        <mrna_strand>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGTG...............................................................AATGAAAATGCATTCACGAGAAT-CAG--GTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E267126" ref_strand="+" ref_description="SGN-E267126 	[cLEI-4-F4]">
      <seq>gaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtacgcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaaacagtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="41815" stop="43496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42115" g_stop="42266" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42267" i_stop="42425" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42426" g_stop="42535" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42536" i_stop="42812" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42813" g_stop="42922" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="372" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42923" i_stop="43086" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43087" g_stop="43196" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="482" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E267126" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42115" e_stop="42266"/>
          <exon e_start="42426" e_stop="42535"/>
          <exon e_start="42813" e_stop="42922"/>
          <exon e_start="43087" e_stop="43196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</genome_strand>
        <mrna_strand>GAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTACGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAACAGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E551912" ref_strand="+" ref_description="SGN-E551912 	[cTSB-2-D8]">
      <seq>aaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatatacatcatggagaggaagaccactttggcttccctcaccgatttgatgaaattataataaaagaaaactagcttcnnaaaaaaaaaaaanaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="44094" stop="107465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44260" g_stop="44275" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44276" i_stop="44393" i_length="118">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44730" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="353" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45067" g_stop="45367" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="654" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45368" i_stop="47999" i_length="2632">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48000" g_stop="48036" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="691" r_length="37" r_score="0.622"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48037" i_stop="49004" i_length="968">
            <donor d_prob="0.762" d_score="0.00"/>
            <acceptor a_prob="0.739" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49005" g_stop="49022" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="709" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E551912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44260" e_stop="44275"/>
          <exon e_start="44394" e_stop="44730"/>
          <exon e_start="45067" e_stop="45367"/>
          <exon e_start="48000" e_stop="48036"/>
          <exon e_start="49005" e_stop="49022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACTTATTGCATGGAACAAGAGTTCATAGGGTTGTTATATATATGTTTAGATATTGGTGTTGGGACTTAAAGTAAGGCTTAAATCATGGGGTTTTTTTTAGCTTCATGCACATGATGAAACTACTAATGTTGCACAATTTGCAATGTGGTATGAGTTTGACCAAATGAATGGTGGATATAGATATAATTAACACAGGGTTAACATAGGCGTATTTAGGATTTAAGCTCTATGAGGTCGTGATTTCAGTAGATTTTTTCATATAAATTTATGTTACGCGTTGAAAGTAATATTAGTTCAGATGAACCCACAGCTAAATGATTGCATCCGCCCATGGTAAGTTATGGTTTTGTTTGGCATTAAATTTTCCATGTCTTATTGGAGATTCAGAAAAGTATTTGAAAACATTCATACACATAATGCGAATTGTTAATTTCTATCCCTGAATTATTGACAGCTTTAAAAATATTCATTTACTTGACTAACTGAATTTAAATACACGCCCGATTTCGCAAGATGAGTGAAATAGACCTCTAAATTCTCGTCAAGTTTAGGAGTGTTTCCAACACTTTTTTCGATTTTTTTATTAAGTGTCACATGCTCCTACAAAAATTTGAGACCACTTGCTATGTCTTGTGGAAGATCGGGGTGTGTCTAAGTTTAGCTAGTCAAGTAGAGGAGTGTTTTTAAGACTGACAATAGTTCGAGGACGAAACTAATAATTTGAGCCAAATTTAGGGGTGTTTTCAATACTTTATCTCTCTTGTAAATATATACTCTGATCTCTCCCATTCATTTTACTTGTCATATTTTTCTTCGACATGTCCCTTAAGAAAAAATTCAACTAAAAGAAAATTAACAATTACGGTAATATTCTTGATCTTTTAGAATGACAATTATTTTAATTTGGATCAGTTAGTTTTAGTAAGCACGATAACTAGAATGGATCCGAGGGAGTATTAGAGGTCAAATGTTATAGATTATAATTATTTATATATTTCAAATAGAACATTGTTTTGAATGTGAAACTTCTATTTTTCTTATGCAAGCATTCAAATAAAACTTTATTGTATAAAGGTTCTAAATTAGAGAAGAAAAATAAGTAACATACAAGAGTTCATTTGAAGACAAATCTTTGACTATGGAAACATTCTAAAAACTTGTTTATGCAATGGCCAGCACTTTGCTTAATGTACAATTGTTCAATAATACCTTTGTGCTTTTAGTGATTGTGACATTGTGATTGAGTGATAAGTATTCATTTATTTTTAATCAGAACTTTTCAGTTTGAATTTTGAGAATGAAGTTATCTGTTAGTGAATAGTTCTAGCATAGGGTTTTAAAGTTCGAAGCTTTGATAACTCGAACTCTAACACAAAATGTGATTGAGTTCGAAAAATTTCATGGAGTTATAAATGTAGTTCAAACTCTTTTTGAAATTTTTGGAGTTAAAATCGCAAAATATTCAAACTTTAGATTTTAAAATGGAGATTTTTCATGTTATAATTACTGTATTTTTGTCTAAAGTTTATTTTCACGTTAACGAACCACTAAATATAGCAAATTTGTGTATTGAATCTAAAATTCTAATCAACGACTCGAAAAGTGAAATTTGCCACCTTTCTTTCTCCTGCCTCACCGATTTAACCAGATTAATAAATTTCAAATATCAAATAATTAAACTAATAAATAAATAAAAATTATTTATTTTTAAGCCGATCACGTATTTTCTAAATGGGAAAAAAATTTAAAGTAAAAAAACAATATTGTGCTCTGATGGAAAATAAAAATTGTTAAAGTAATAATAAATAAATAATTTTCTTGAATGTCAAAAGGAAAAAAAAAAACTTAAA</genome_strand>
        <mrna_strand>AACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCNNAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAANAAANAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E283049" ref_strand="-" ref_description="SGN-E283049 	[cLER-17-P3]">
      <seq>ctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcgagtcatctcatcaatcaaatttccaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttatgctacatatacatcatggagaggaagaccactttggctttcccacaccgttttgatgaaattataataaaagaaaactagcttcaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="44222" stop="45667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44522" g_stop="44730" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45067" g_stop="45372" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="517" r_length="308" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E283049" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283049" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44522" e_stop="44730"/>
          <exon e_start="45067" e_stop="45372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTA-GCTACATATACATCATGGAGAGGAAGACCACTTTGGC-TTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTT</genome_strand>
        <mrna_strand>CTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCGAGTCATCTCATCAATCAAATTTCCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTATGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTTCCCACACCGTTTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E218144" ref_strand="-" ref_description="SGN-E218144 	[cLEL-23-F21]">
      <seq>caagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcggtgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccatttctaagttacagcttcaggaagatagtgcttagctacatagacatcatggggaggaagaccactttggcttccctcaccgatttgatgtaattataataaaagaagtctagcttccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="44320" stop="107465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44620" g_stop="44730" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45067" g_stop="45367" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="412" r_length="301" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45368" i_stop="47159" i_length="1792">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47160" g_stop="47175" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="428" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E218144" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218144" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44620" e_stop="44730"/>
          <exon e_start="45067" e_stop="45367"/>
          <exon e_start="47160" e_stop="47175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACT</genome_strand>
        <mrna_strand>CAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGGTGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTTCTAAGTTACAGCTTCAGGAAGATAGTGCTTAGCTACATAGACATCATGGGGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGTAATTATAATAAAAGAAGTCTAGCTTCCATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E217924" ref_strand="-" ref_description="SGN-E217924 	[cLEL-23-F21]">
      <seq>gctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaacctaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatagacatcatggagaggaagaccactttggcttcccgcaccgatttgatgaaattataataaaagaagactagcttcaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="44378" stop="107465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44678" g_stop="44730" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45067" g_stop="45367" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="354" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45368" i_stop="47159" i_length="1792">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47160" g_stop="47175" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="370" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E217924" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217924" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44678" e_stop="44730"/>
          <exon e_start="45067" e_stop="45367"/>
          <exon e_start="47160" e_stop="47175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACT</genome_strand>
        <mrna_strand>GCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAACCTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATAGACATCATGGAGAGGAAGACCACTTTGGCTTCCCGCACCGATTTGATGAAATTATAATAAAAGAAGACTAGCTTCAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E372757" ref_strand="-" ref_description="SGN-E372757 	[TUS-32-J4]">
      <seq>tcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctttatcagccatagaaacttttaattccaatcctgctattcaaaaggaaaaggaatctaccgagtttggaaaaaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcccagttattttttgaaaatggggcctgaaatcgaaggaggaacttttgatattgggtcaacatccccctcaaatcaaagcttcggaacgggttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaaaaaatgcagatcatgttaaaaggtcaaatgggtactcattgacattgttatgtttttatttttgttaattttcatttgcttatcatacattttaaatggggttcatgttaaaacatgaaatgttgaatgccattcattgttgtacataatattaaaggattttttttccccctcctcatccccaaatacaataataattacgtttcattccccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="52352" stop="50181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52052" g_stop="51890" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51217" g_stop="51120" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="261" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50844" g_stop="50487" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="619" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="656"/>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E372757" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372757" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52052" e_stop="51890"/>
          <exon e_start="51217" e_stop="51120"/>
          <exon e_start="50844" e_stop="50487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</genome_strand>
        <mrna_strand>TCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTTTATCAGCCATAGAAACTTTTAATTCCAATCCTGCTATTCAAAAGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTTTGGAAAAAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCCCAGTTATTTTTTGAAAATGGGGCCTGAAATCGAAGGAGGAACTTTTGATATTGGGTCAACATCCCCCTCAAATCAAAGCTTCGGAACGGGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAAAAATGCAGATCATGTTAAAAGGTCAAATGGGTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTTTAAATGGGGTTCATGTTAAAACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTTTTTCCCCCTCCTCATCCCCAAATACAATAATAATTACGTTTCATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E213578" ref_strand="-" ref_description="SGN-E213578 	[cLEC-71-L6]">
      <seq>aaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttttgatattgtgtcaacatccacctcaaatcaaagtttcggaacgcgttcaattattgattttcccatatcccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttttatttttgttaattttcatttgcttatcatacattctaaatggtgttcatgctaagacatgaaatgttgaatgccattcattgttgtacataatattaaaggattttctctcaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="51500" stop="50228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51200" g_stop="51120" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50844" g_stop="50530" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="396" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="423"/>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E213578" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51200" e_stop="51120"/>
          <exon e_start="50844" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</genome_strand>
        <mrna_strand>AAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTTTGATATTGTGTCAACATCCACCTCAAATCAAAGTTTCGGAACGCGTTCAATTATTGATTTTCCCATATCCCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E317014" ref_strand="-" ref_description="SGN-E317014 	[cTOA-27-G9]">
      <seq>aatgggaagcccagtatgggggacatgtgcaggtctcattttcttggcaaataaggccactgggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggaacgcgttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="55036" stop="50343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54736" g_stop="54675" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54674" i_stop="52619" i_length="2056">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52618" g_stop="52545" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="136" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52081" g_stop="51890" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="328" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51217" g_stop="51120" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50844" g_stop="50643" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="628" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E317014" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54736" e_stop="54675"/>
          <exon e_start="52618" e_stop="52545"/>
          <exon e_start="52081" e_stop="51890"/>
          <exon e_start="51217" e_stop="51120"/>
          <exon e_start="50844" e_stop="50643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</genome_strand>
        <mrna_strand>AATGGGAAGCCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E316019" ref_strand="-" ref_description="SGN-E316019 	[cTOA-23-C8]">
      <seq>gggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggaacgcgttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="52919" stop="50343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52619" g_stop="52545" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52081" g_stop="51890" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="267" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51217" g_stop="51120" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="365" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50844" g_stop="50643" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="567" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E316019" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316019" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52619" e_stop="52545"/>
          <exon e_start="52081" e_stop="51890"/>
          <exon e_start="51217" e_stop="51120"/>
          <exon e_start="50844" e_stop="50643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</genome_strand>
        <mrna_strand>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E372758" ref_strand="+" ref_description="SGN-E372758 	[TUS-32-J4]">
      <seq>gcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttcttggcaaataaggccactgggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56644" stop="50832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56344" g_stop="56213" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="260" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54675" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="348" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54674" i_stop="52619" i_length="2056">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52618" g_stop="52545" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52081" g_stop="51890" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="614" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51217" g_stop="51132" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="700" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E372758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56344" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54675"/>
          <exon e_start="52618" e_stop="52545"/>
          <exon e_start="52081" e_stop="51890"/>
          <exon e_start="51217" e_stop="51132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGC</genome_strand>
        <mrna_strand>GCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E245551" ref_strand="+" ref_description="SGN-E245551 	[cLEF-43-N8]">
      <seq>gatcctttttttttcgattttcaaggaagtgtgacgcaggtggccgcctgttagccgccaacagatattatcagtgaagcaaaagcaaaacactcaccaaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56782" stop="54394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56482" g_stop="56213" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="397" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54694" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="466" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E245551" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56482" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATGCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</genome_strand>
        <mrna_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTGTTAGCCGCCAACAGATATTAT-CAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E294032" ref_strand="+" ref_description="SGN-E294032 	[cLET-13-A3]">
      <seq>gcgcaattgctgtttcaagattgagttttttttagtacccttttgttaattttcattgcttcttgattttgcaacttgaaaaatggatgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcatttgctgaatgttagctccctaatcatccctggaggggagagcaccaccatggccaaggtggctgagctccacaatctgttccctgctttgcgtgagtttgctcaaaagaagaagccagtataggggacatgtgcaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56645" stop="54402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56346" g_stop="56213" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="262" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54702" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="323" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E294032" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56346" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTC</genome_strand>
        <mrna_strand>GCGCAATTGCTGTTTCAAGATTGAGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGCTTCTTGATTTTGCAACTTGAAAAATGGATGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCATTTGCTGAATGTTAGCTCCCTAATCATCCCTGGAGGGGAGAGCACCACCATGGCCAAGGTGGCTGAGCTCCACAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGCTCAAAAGAAGAAGCCAGTATAGGGGACATGTGCAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E283934" ref_strand="+" ref_description="SGN-E283934 	[cLER-13-D7]">
      <seq>aaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56683" stop="54426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56383" g_stop="56213" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="299" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54726" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="336" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E283934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56383" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGC</genome_strand>
        <mrna_strand>AAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E329467" ref_strand="+" ref_description="SGN-E329467 	[cTOD-11-B5]">
      <seq>tgatctttcccaactttaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttattataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcatttcgctgaatggcatccgattgaataacaaagttgaactcgggtggatgcccgaatagcgttttcctctttttaaggatcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgctattttggatgtctgtgatgatgcattctgttgatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="58224" stop="60907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58524" g_stop="58543" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58544" i_stop="59773" i_length="1230">
            <donor d_prob="0.805" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59774" g_stop="60007" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="254" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60008" i_stop="60501" i_length="494">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.707" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60502" g_stop="60607" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="360" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E329467" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58524" e_stop="58543"/>
          <exon e_start="59774" e_stop="60007"/>
          <exon e_start="60502" e_stop="60607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTT</genome_strand>
        <mrna_strand>TGATCTTTCCCAACTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTCGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGCTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E547620" ref_strand="+" ref_description="SGN-E547620 	[TUS-71-J13]">
      <seq>aatcttggaaaaagattgtgtttttaattgattttgattgttgttatgaacaattgttaggagaaagattgaagcttttgatgtttttagatttctttcaaagaatcttggaaaaagattgtatttttatgagcaattgttaggagaatgattgaaccatttcatggttttgatttcgtataaagaatattgatagaagattgttttttattgggtttgattgttttatgaacaattgttaggaggatgattgaacctttgaatggttttgattgtctccaaagaatcttggaaagagattggatttttattggttttgattgtttttatggaaatttgtatggagaatgactgaaccctttgatggttttgatttcctataaagcatcttgggaaatagatggtttttattggttttgatcatttttctgaaaacattgtgatccaaatgatagaacctcctgatgtttttgattttctacaaagaattttgggaaaatattgtatttttgtaggttttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="58269" stop="59392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58569" g_stop="59093" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E547620" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58569" e_stop="59093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</genome_strand>
        <mrna_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTGTTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTCATGGTTTTGATTTCGTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCTCCAAAGAATCTTGGAAAGAGATTGGATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTCCTATAAAGCATCTTGGGAAATAGATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTCCTGATGTTTTTGATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E549557" ref_strand="+" ref_description="SGN-E549557 	[TUS-71-I7]">
      <seq>aactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacccgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggaaattaggcctaataggggatatggaaacagctggtcacatgaaccattgttacaacaagaggctgaagaagtcgaagatgatggctttgatagtggcgatataattgatactggtagtgaggatgatgaagtgtgtcacagcccggttaaacgttatcaagagattctcatggaaagagctcagaatgggttaatttgcagggagatccctgtcaaggaaacacacaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatagaagttgcactgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="59617" stop="62201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59917" g_stop="60007" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60008" i_stop="60501" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60502" g_stop="60910" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="500" r_length="409" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60911" i_stop="61081" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61082" g_stop="61156" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="575" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61157" i_stop="61245" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61246" g_stop="61290" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="620" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61291" i_stop="61832" i_length="542">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61833" g_stop="61901" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="689" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E549557" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59917" e_stop="60007"/>
          <exon e_start="60502" e_stop="60910"/>
          <exon e_start="61082" e_stop="61156"/>
          <exon e_start="61246" e_stop="61290"/>
          <exon e_start="61833" e_stop="61901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTT</genome_strand>
        <mrna_strand>AACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACCCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATAGAAGTTGCACTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E327155" ref_strand="+" ref_description="SGN-E327155 	[cTOC-18-B7]">
      <seq>aaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatcgaagttgcactgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttcttcgtgaggtttcgatcatgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaagtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctggtttcactgctcctgaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="60593" stop="64563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60893" g_stop="60910" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60911" i_stop="61081" i_length="171">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61082" g_stop="61156" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="93" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61157" i_stop="61245" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61246" g_stop="61290" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="138" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61291" i_stop="61832" i_length="542">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61833" g_stop="61909" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="213" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61910" i_stop="62041" i_length="132">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62042" g_stop="62129" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="301" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62130" i_stop="62215" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62216" g_stop="62340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="426" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63783" g_stop="63878" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="522" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64201" g_stop="64263" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="585" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E327155" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60893" e_stop="60910"/>
          <exon e_start="61082" e_stop="61156"/>
          <exon e_start="61246" e_stop="61290"/>
          <exon e_start="61833" e_stop="61909"/>
          <exon e_start="62042" e_stop="62129"/>
          <exon e_start="62216" e_stop="62340"/>
          <exon e_start="63783" e_stop="63878"/>
          <exon e_start="64201" e_stop="64263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGAATGTCCTTTATTTCTTCCCTTGAGTTTCAATCTTCCTTTTGTGGGTTATCCGCAAATTTTATCCTGTAGTATTAGCTATTTGTCCGCTGAATTGTTTATTTGCTGTCCTAAAGTTTGTCAAGTTAATTGCAGGTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGC</genome_strand>
        <mrna_strand>AAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGA-G-....................................................................................................................................GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAAGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGGTTTCACTGCTCCTGAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E325037" ref_strand="+" ref_description="SGN-E325037 	[cTOC-13-B15]">
      <seq>tgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtaccgtggaaggaaaatgggtttgtgaagaattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="61752" stop="64926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62052" g_stop="62129" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62130" i_stop="62215" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62216" g_stop="62340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="205" r_length="127" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63783" g_stop="63878" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="301" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64201" g_stop="64267" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="368" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64404" g_stop="64519" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="484" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64604" g_stop="64626" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="507" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E325037" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62052" e_stop="62129"/>
          <exon e_start="62216" e_stop="62340"/>
          <exon e_start="63783" e_stop="63878"/>
          <exon e_start="64201" e_stop="64267"/>
          <exon e_start="64404" e_stop="64519"/>
          <exon e_start="64604" e_stop="64626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTA-CGTGGAAGGAAAATGGGTTTGTGAAG-ATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCT</genome_strand>
        <mrna_strand>TGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACCGTGGAAGGAAAATGGGTTTGTGAAGAATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E273413" ref_strand="+" ref_description="SGN-E273413 	[cLEN-3-C22]">
      <seq>aaagttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="61912" stop="64941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62212" g_stop="62340" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63783" g_stop="63878" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="225" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64201" g_stop="64267" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="292" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64404" g_stop="64519" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="408" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64604" g_stop="64641" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="446" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E273413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62212" e_stop="62340"/>
          <exon e_start="63783" e_stop="63878"/>
          <exon e_start="64201" e_stop="64267"/>
          <exon e_start="64404" e_stop="64519"/>
          <exon e_start="64604" e_stop="64641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAA</genome_strand>
        <mrna_strand>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E328707" ref_strand="+" ref_description="SGN-E328707 	[cTOC-23-G18]">
      <seq>ccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgttactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaactaactgcagagtgtttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagatacactaggatgtctttttttccccggcaaattgcatcttgcaggagcaatcggatacatgttatgtgaacgatagtagacaatgangtgttcgagtaaattttgtttggtttctgtcatactccgagagtactcgttcagttgtaatggcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="63507" stop="65664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63807" g_stop="63878" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64201" g_stop="64267" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="139" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64404" g_stop="64519" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="255" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64604" g_stop="64682" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="334" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64990" g_stop="65364" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="709" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E328707" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63807" e_stop="63878"/>
          <exon e_start="64201" e_stop="64267"/>
          <exon e_start="64404" e_stop="64519"/>
          <exon e_start="64604" e_stop="64682"/>
          <exon e_start="64990" e_stop="65364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCG</genome_strand>
        <mrna_strand>CCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATACACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGACAATGANGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E547619" ref_strand="-" ref_description="SGN-E547619 	[TUS-71-J13]">
      <seq>agtgactgctgctgtaaggtgaagattagtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccattcattctccccgacgatatgaatccgctactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaattaactgcagagtgttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaaactaggatgtctttttttccccagcaaattgcacttgcaggagcaatcggatacatgttatgtgaacgatagtagaaaatgagacgttcgagtaaattttgtttggtttctgtcatactccgagagtactatttcagttgtaatggcagcgagacatcgcgatatgttttcgttgtttttttgttggtgatgaactgatgatggtacaagttttgtgttttgatacttagaagaaagccacacatatttgtttttgtggatatttgtatgtgttttttttatatgaagaagaattttcatatgatagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="63521" stop="65823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63821" g_stop="63878" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64201" g_stop="64267" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="124" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64404" g_stop="64519" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="240" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64604" g_stop="64682" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="320" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64990" g_stop="65526" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="864" r_length="544" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E547619" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547619" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63821" e_stop="63878"/>
          <exon e_start="64201" e_stop="64267"/>
          <exon e_start="64404" e_stop="64519"/>
          <exon e_start="64604" e_stop="64682"/>
          <exon e_start="64990" e_stop="65526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCA-TCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGAT-AAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTG-TTTTTT-TT-GT--TG--GTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCA-ACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTT</genome_strand>
        <mrna_strand>AGTGACTGCTGCT-GTAAGGTGAAGATTAGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATTCATTCTCCCCGACGATATGAATCCGCTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAATTAACTGCAGAGTG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAAACTAGGATGTCTTTTTTTCCCCAGCAAATTGCA-CTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGACGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTATTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTGTTGGTGATGAACTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGAAGAAAGCCACACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E547568" ref_strand="-" ref_description="SGN-E547568 	[TUS-71-I7]">
      <seq>tttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgctactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaattaactgcagagtgttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaaactaggatgtctttttttccccagcaaattgcacttgcaggagcaatcggatacatgttatgtgaacgatagtagaaaatgagacgttcgagtaaattttgtttggtttctgtcatactccgagagtactatttcagttgtaatggcagcgagacatcgcgatatgttttcgttgtttttttgttggtgatgaactgatgatggtacaagttttgtgttttgatacttagaagaaagccaacatatttgtttttgtggatatttgtatgtgttttttttatatgaagaagaattttcataaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="63942" stop="107472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64242" g_stop="64267" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64404" g_stop="64519" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="142" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64604" g_stop="64682" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="221" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64990" g_stop="65523" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="761" r_length="540" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65524" i_stop="65726" i_length="203">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65727" g_stop="65746" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="780" r_length="19" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E547568" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64242" e_stop="64267"/>
          <exon e_start="64404" e_stop="64519"/>
          <exon e_start="64604" e_stop="64682"/>
          <exon e_start="64990" e_stop="65523"/>
          <exon e_start="65727" e_stop="65746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGAT-AAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTG-TTTTTT-TT-GT--TG--GTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTATTAAGTGAACATCCTTGTTATAGATTTTTAGTATATGTCCCTCTTTTTTTATCGCTTTTCTTGAGCCGAGGATCTATCTAGAACCGTCTCTCTACCTCTCGCATGATAGAGGTAAGGTATGCATAACTAATATGAGAAAATGTTATATTACATTCTATAATTTTGTATATATTATATGATTGTCTAATATCGTCTATAGTATTACAGAGGCGGAGCCAG</genome_strand>
        <mrna_strand>TTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGCTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAATTAACTGCAGAGTG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAAACTAGGATGTCTTTTTTTCCCCAGCAAATTGCA-CTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGACGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTATTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTGTTGGTGATGAACTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................AAAACTCGAGG-GGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E254120" ref_strand="+" ref_description="SGN-E254120 	[cLEG-34-E3]">
      <seq>attctctctctaaaaattccggtgagatggtcgccgtaagttcgttttccggcgaatatccgggcgttatagttacctgtgatcggatcgaaacttacttcactccagcaatggaataatcaccacactggtttttatctccggcgacgctaatttgcgactggcagaaataagcagctggatttccgataaggagtcattagcggttggtagtgaattactggtttttggccgtgagttatttgattttgctatatggaaatacagtttgattcaaaacaactgggaaaaatgtgaagggatgaatcatcgtcgttgtctgtttggatcgggtagtcttggttcaatttctattgttgcagggggtagtgacaagaatgggaatgtactaaaatctgccgagctttatgattctttgactggtacatgggaaatactgcccaacatgcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="68458" stop="70435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68758" g_stop="68945" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68946" i_stop="69783" i_length="838">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69784" g_stop="70135" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="540" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E254120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68758" e_stop="68945"/>
          <exon e_start="69784" e_stop="70135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCGGTGAGATCCGAATAGGTTTCCTTACCTGGTTTGGATCCGAATCGCTATCTGTTTTTCCTTACTGAATAATTCATTTCTCATTCAATTTGCCTCTTTTCTCAAGTTTAATAAGCTTTGTTCTGTGTATCTTATATTTTCTGCTTCAAAATAAGGGAAAATTTCTGAATAATATGTGAAATTTGAATCTCAGTGGAAAAAACGCGAGGAAGTTTGAATATTTTGGGTAATATTTCGAACTATTTGATTATAGTTGCTAGAGTTTTGACATACTCATGAAGTTGTAGTAGTTAATAAGCGAGCTGGAGTTCATAGCTTTTTGGTGAGAGAGAAATTGATATTTTGATAAAAAAATTTGGGAATTTTGTGTTTTCAGAAATAAATTTTGTGGCTTTTTTCAAGTGTGTGATTGATTGGAAACTGTGGGTTGTGTATGATAGCATGGCTTCTGAAACTAAGAAGTTGAAGAATGGGTATTTATTTAGGAAGGAGGAAGAGGAGAAGGGGAAGAGAATGAGGTTAGAAGAAGAAGAAGATGATGATGGTCATTGCAAATTTAGATCAAGTGAATCACTTCTTCCAGGCCTACATGATGATGTTGCTTTAACATGTCTTGCTCGGGCATCTAGATCAGATTATGCATCGTTGTCGTGCCTGAATGCTAGGTTTAATTCATTAGTCAAGAGTGGTTATTTATATGAATTAAGGAGGCGGATAAGTGTTGTTGAACACTGGGTTTATATGGTTTGTGATCCTCGGGGTTGGGAGGCTTTTGATCCTTTCAGAAAAAAATGGTTGAGATTACCGAAAATTCCCTGTGATGATTGCTTTAATTATGCAGATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTG</genome_strand>
        <mrna_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCGGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E283862" ref_strand="+" ref_description="SGN-E283862 	[cLER-13-I11]">
      <seq>gcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgggttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="69743" stop="70911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70043" g_stop="70611" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E283862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70043" e_stop="70611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTA</genome_strand>
        <mrna_strand>GCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E302705" ref_strand="+" ref_description="SGN-E302705 	[cLEY-1-M15]">
      <seq>tggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgagttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgtaattccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="69767" stop="70921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70067" g_stop="70621" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E302705" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70067" e_stop="70621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACAC</genome_strand>
        <mrna_strand>TGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGAGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E302706" ref_strand="+" ref_description="SGN-E302706 	[cLEY-1-M15]">
      <seq>ttttttttttgagtgagtgaaaataaccatccagttaagaggacattttagctaagaacaactgcttatctcaaacacctgaaagatgttaaataaaaagaaatgctaataaatcaaacaatgtgttggaattacgctagaaacaacagttgaaacaaatgacttctttctccatttggttggatgagtctcaacaacccatcacggcacaattgtatacaaagacaccagaatgctcttttaggccgatgaccttccaatccaaggtgccgtctttacaccctgattttggtgcccaagaactcaatataatagcttcaccttctggacccctgttgccacctaccacaagaagttcttcaccacatgctttgaaagcaagaccccaaccattcgaagaatcagccctcacgggaagtcttcccaatacctcccatgagttatttttcttgtcatacttcttaaccatgttggttagatattcaactgcatatagttggttattaacaactgcaacaagaggaggtgcctgagcagctctattgacgtttggaacatgccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="71034" stop="69879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70743" g_stop="70179" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E302706" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70743" e_stop="70179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGAATGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACATTTTAGCTAAGAACAACTGCTTATCTCAAACACCTGAAAGATGTTAAATAAAAAGAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACAAATGACTTCTTTCTCCATTTGGTTGGATGAGTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTGTTGCCACCTACCACAAGAAGTTCTTCACCACATGCTTTGAAAGCAAGACCCCAACCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTATTTTTCTTGTCATACTTCTTAACCATGTTGGTTAGATATTCAACTGCATATAGTTGGTTATTAACAACTGCAACAAGAGGAGGTGCCTGAGCAGCTCTATTGACGTTTGGATACATGCCCTC</genome_strand>
        <mrna_strand>TTTTTTTTTTGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACATTTTAGCTAAGAACAACTGCTTATCTCAAACACCTGAAAGATGTTAAATAAAAAGAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACAAATGACTTCTTTCTCCATTTGGTTGGATGAGTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTGTTGCCACCTACCACAAGAAGTTCTTCACCACATGCTTTGAAAGCAAGACCCCAACCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTATTTTTCTTGTCATACTTCTTAACCATGTTGGTTAGATATTCAACTGCATATAGTTGGTTATTAACAACTGCAACAAGAGGAGGTGCCTGAGCAGCTCTATTGACGTTTGGA-ACATGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E357546" ref_strand="+" ref_description="SGN-E357546 	[cTOS-23-N17]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtgttttaagaactatgctttattgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="74994" stop="73762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74694" g_stop="74061" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E357546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74694" e_stop="74061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E357722" ref_strand="+" ref_description="SGN-E357722 	[cTOS-24-P11]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtgttttaagaactatgctttattgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="74994" stop="73762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74694" g_stop="74061" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E357722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74694" e_stop="74061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E352051" ref_strand="+" ref_description="SGN-E352051 	[cTOS-13-H13]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtggtttaagaactatgctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="74994" stop="73775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74694" g_stop="74075" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E352051" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74694" e_stop="74075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGGTTTAAGAACTATGCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E354154" ref_strand="+" ref_description="SGN-E354154 	[cTOS-16-N16]">
      <seq>aagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagttatataaaaatatgtgttatgtgttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75083" stop="73787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74783" g_stop="74083" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E354154" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74783" e_stop="74083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTAT</genome_strand>
        <mrna_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAAT-AATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAG-TTATATAAAAATATGTGTTATGTGTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E252250" ref_strand="+" ref_description="SGN-E252250 	[cLEG-12-E4]">
      <seq>tttttttttaaaacacataacacatatttttatataaactgaaaaaagaaacttagagacaagcaactcacatacacacatggacacatacacaagacatcaagtgcagttccagaagggagaaagtaagagtacagtatcaactttcaacctacaacctcccctcaatttattcccaacagacactaaagcaaaagttgaacacaagacaacataaaatgcacttaaaactcttgacaaaactctagtctccccaccattgatgagcaaacacaccacttctccttagagttttgaaaaggctcatgcagtctccacaaagagcatttctgcaatctgcagcggagcagcgaaagaacagctcatcgacgtggcatattgatccagtttggaatagttctgctagaatgtttagctctggtgctctagcattcatcatgaggatgacatagtctccgtctttaactgtttcactaaaccaatgaatgaagtcgaatccttcatgatctagtggtgcacccaaatattcgtcagtgtcaacagatgacaaagtagtctctccggcgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="73787" stop="74952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74083" g_stop="74652" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E252250" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74083" e_stop="74652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTCTTAAAACACATAACACATATTTTTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAG</genome_strand>
        <mrna_strand>TTTTTTTTTAAAACACATAACACATATTTTTATATAAACTGAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGAGTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAAGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E272203" ref_strand="-" ref_description="SGN-E272203 	[cLEM-19-G1]">
      <seq>ctttgtcatctgttgacactgacgaatatttgggtgccccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcaaaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttaaataaaaatatgtgttatgtgttttaagaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="74934" stop="73784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74634" g_stop="74085" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="568"/>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E272203" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272203" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74634" e_stop="74085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACT</genome_strand>
        <mrna_strand>CTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCCCCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAAAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTAAATAAAAATATGTGTTATGTGTTTTAAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E266061" ref_strand="+" ref_description="SGN-E266061 	[cLEI-6-M15]">
      <seq>ttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacctttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75046" stop="73825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74746" g_stop="74125" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E266061" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74746" e_stop="74125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTT</genome_strand>
        <mrna_strand>TTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACCTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E350493" ref_strand="+" ref_description="SGN-E350493 	[cTOS-5-I1]">
      <seq>aagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttaatgtctgttgggaataaattgaagggaggttgtaagttgaaagttgatactggaatcttactttctcccttctggaactgcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75083" stop="73881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74783" g_stop="74181" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E350493" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74783" e_stop="74181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGAT</genome_strand>
        <mrna_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAATGTCTGTTGGGAATAAATTGAAGGGAGGTTGTAAGTTGAAAGTTGATACTGGAATCTTACTTTCTCCCTTCTGGAACTGCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E235652" ref_strand="+" ref_description="SGN-E235652 	[cLED-15-C18]">
      <seq>atatcaacgttggtgcaggggaattcgtagaatcaactcttgcaagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75126" stop="74029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74826" g_stop="74329" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E235652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74826" e_stop="74329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACT</genome_strand>
        <mrna_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E304730" ref_strand="+" ref_description="SGN-E304730 	[cLEX-11-B4]">
      <seq>tggtgctgacagaattgggactcttgagtgctggtggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaaagatcagagattgttcaatctctcgtgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75669" stop="74679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75369" g_stop="74979" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E304730" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75369" e_stop="74979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTC</genome_strand>
        <mrna_strand>TGGTGCTGACAGAATTGGGACTCTTGAGTGCTGGTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E330877" ref_strand="+" ref_description="SGN-E330877 	[cTOD-10-F4]">
      <seq>ttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75838" stop="74773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75538" g_stop="75073" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E330877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75538" e_stop="75073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGA</genome_strand>
        <mrna_strand>TTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E334880" ref_strand="+" ref_description="SGN-E334880 	[cTOE-3-B4]">
      <seq>ttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75834" stop="74929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75534" g_stop="75229" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E334880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75534" e_stop="75229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATA</genome_strand>
        <mrna_strand>TTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E337968" ref_strand="+" ref_description="SGN-E337968 	[cTOE-14-I3]">
      <seq>ggttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="75840" stop="74955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75540" g_stop="75255" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E337968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75540" e_stop="75255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGA</genome_strand>
        <mrna_strand>GGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E273865" ref_strand="+" ref_description="SGN-E273865 	[cLEN-7-E6]">
      <seq>agctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttttacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="85247" stop="89368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85547" g_stop="85648" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85760" g_stop="85894" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="237" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86991" g_stop="87086" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="333" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87087" i_stop="88899" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88900" g_stop="89068" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="502" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E273865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85547" e_stop="85648"/>
          <exon e_start="85760" e_stop="85894"/>
          <exon e_start="86991" e_stop="87086"/>
          <exon e_start="88900" e_stop="89068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGT</genome_strand>
        <mrna_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTTTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E273741" ref_strand="+" ref_description="SGN-E273741 	[cLEN-7-E10]">
      <seq>ctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttttttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattgggcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="85249" stop="87360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85549" g_stop="85648" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85760" g_stop="85894" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="235" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86991" g_stop="87060" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="305" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E273741" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85549" e_stop="85648"/>
          <exon e_start="85760" e_stop="85894"/>
          <exon e_start="86991" e_stop="87060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAA</genome_strand>
        <mrna_strand>CTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTTTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGGCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E269514" ref_strand="+" ref_description="SGN-E269514 	[cLEM-2-P6]">
      <seq>ttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttctacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatactacacctactgagaatatgtattctacggatagagccgctgaaccggaggaaaaaacaggccttgagtgtaccaatggtaaaagcttgtcagaatcttcagcagatgacactacagaaccagcaacccaacttaagaagtgttcatcagataatttgaccactccagtgcaacatttcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="85457" stop="89590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85640" g_stop="85648" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85760" g_stop="85894" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="144" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86991" g_stop="87086" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="240" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87087" i_stop="88899" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88900" g_stop="89290" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="631" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E269514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85640" e_stop="85648"/>
          <exon e_start="85760" e_stop="85894"/>
          <exon e_start="86991" e_stop="87086"/>
          <exon e_start="88900" e_stop="89290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</genome_strand>
        <mrna_strand>TTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E256140" ref_strand="-" ref_description="SGN-E256140 	[cLEG-37-P2]">
      <seq>catcccactgttatcaaacttttaaggactaactcacgtctaaggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaagggggataataggaacaacagattatggaggaagatgagcagcgctactcttgcacgacataggaccaaatctatgcccaattcagagccttttaaacctgtcaaagccatggctgttgatctttttccacattctcctcattgtgaactggtgatgcttttggagaggtaaatttatctgtttccttaagtgataatcttgagtagccatatttatgtgaggaaatagaaatgttcctttatatttgttctctcaatgtggaaaacaagggatgtgctttcgacaaacagttactagatatctgttactgatggcagttttgaggcaatcttttactcgtggaagatttccataatattgttttgtaactttttccttattttattaccaacttccagttccctgattccctgttcgaaaagaatacctctaatattaatgacagattatgtttatgacctctcatctaatttaagatgctgtaacaatttcaagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="89639" stop="90976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89939" g_stop="89982" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="53" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89983" i_stop="90096" i_length="114">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90683" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="640" r_length="587" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E256140" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89939" e_stop="89982"/>
          <exon e_start="90097" e_stop="90683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</genome_strand>
        <mrna_strand>GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E331267" ref_strand="+" ref_description="SGN-E331267 	[cTOD-6-J17]">
      <seq>ttttattatacaaagtaacaaacattctggttctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="97543" stop="99598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97843" g_stop="98116" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99014" g_stop="99298" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="559" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E331267" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97843" e_stop="98116"/>
          <exon e_start="99014" e_stop="99298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</genome_strand>
        <mrna_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E327559" ref_strand="+" ref_description="SGN-E327559 	[cTOC-20-A14]">
      <seq>agagaactagtctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaattcggatacagagaaggtaactgtcccggatacaggtccagctgctgcagttgtgccacaacaagagaaggtatccatttcaaggtcatggtcacttactaaaatgttcacgcctcgcatcaagaggacctcgtctttgcccgttacnacaatttcacattcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="97569" stop="99766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97862" g_stop="98116" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99014" g_stop="99466" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="706" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E327559" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97862" e_stop="98116"/>
          <exon e_start="99014" e_stop="99466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</genome_strand>
        <mrna_strand>AGAGAA-CTAG-TCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACNACAATTTCACATTCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E308672" ref_strand="+" ref_description="SGN-E308672 	[cLEZ-13-E21]">
      <seq>agtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaattcggatacagagaaggtaactgtcccggatacaggtccagctgctgcagttgtgccacaacaagagaaggtatccatttcaaggtcatggtcacttactaaaatgttcacgcctcgcatcaagaggacctcgtctttgcccgttacaccaatttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="97721" stop="99756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98021" g_stop="98116" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99014" g_stop="99456" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="539" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E308672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98021" e_stop="98116"/>
          <exon e_start="99014" e_stop="99456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACA</genome_strand>
        <mrna_strand>AGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E219059" ref_strand="-" ref_description="SGN-E219059 	[cLEL-11-J14]">
      <seq>cgtctcgtataggtcctcaaaatcatcaacacgatatagaaaatcctgagacgtttagttggagctagattgtgtcttatgttactgttacagccaaaaaaagagttgagtgatttgttcatacagagttgtggagattgatgtttagtacaagttagaaacttattgtgttctactctaagttgtgcggactcttcactttccatgccacacacccgtgttggattctccaaaaatacactattttttggagtatctgacgcgcatcaatagacatttttgaagagtccgaccaacataggttctactatacgaaaaacagaaatagttgctgttgttgtttgtattgctgaaagaatatgtaaaaagtgaaatgcatatataagtagaagagagtatacaaaggtgttttatgaaaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="101510" stop="107464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101810" g_stop="102230" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102231" i_stop="102684" i_length="454">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102685" g_stop="102703" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="440" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E219059" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101810" e_stop="102230"/>
          <exon e_start="102685" e_stop="102703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAATTACGATTTTACGAGTCATCACGAACGATTTTAAGTACAATTTTCATTCCATATGTTTTTAAACTTGTTCACAAGACATGCCGGATGGACAAACTTGCCTTGTTCATCGTTCATCGGATGGGAATGATCAGGTCAATTTGCACCTTGACTAGTTCCACGAGATACCTGTCAGCTTCTACTAGTAACTCTATCCATCAAGAATAAGGCAAATTGGGCGAATGATTCAAAGCACAATTTTTTAGTCTATCTATGTTTAAATTGTTGACAAGTCATATCATATTGACAAAATTCGTTTGCATTATTCAACTTTCCACAAGTCACACATGACTGATAAGACTGAATATATTTTCATTCTACCAATCTCATTAAATTATCGACAAGTCTTATCGTATTGGTCTAATTAGCATGTGTTGTTAAATTATTCTTTAGATGAATTAAAGCATTTTATGTCAAGGTAAAAAAAGAAAAACAAA</genome_strand>
        <mrna_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E229610" ref_strand="+" ref_description="SGN-E229610 	[cLEL-4-H22]">
      <seq>tttttttttcatatttcacctttgtatactctcttctacttatgtatgcatttcactttttacatattctttcagcaatacaaacaacaacagcaactatttctggttttcgtatagtagaacctatgttggtcggactcttcaaaaatgtctattgatgcgcgtcagatactccaaaaaatagtgtatttttggagaatccaacacgggtgtgtggcatggaaagtgaagagtccgcacaacttagagtagaacacaataagtttctaacttgtactaaacatcaatctccacaactctgtatgaacaaatcactcaactctttttttggctgtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="102517" stop="101595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102233" g_stop="101895" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="SGN-E229610" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102233" e_stop="101895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTTCATAAAACACCTTTGTATACTCTCTTCTACTTATATATGCATTTCACTTTTTACATATTCTTTCAGCAATACAAACAACAACAGCAACTATTTCTGTTTTTCGTATAGTAGAACCTATGTTGGTCGGACTCTTCAAAAATGTCTATTGATGCGCGTCAGATACTCCAAAAAATAGTGTATTTTTGGAGAATCCAACACGGGTGTGTGGCATGGAAAGTGAAGAGTCCGCACAACTTAGAGTAGAACACAATAAGTTTCTAACTTGTACTAAACATCAATCTCCACAACTCTGTATGAACAAATCACTCAACTCTTTTTTTGGCTGTAACA</genome_strand>
        <mrna_strand>TTTTTTTTTCATATTTCACCTTTGTATACTCTCTTCTACTTATGTATGCATTTCACTTTTTACATATTCTTTCAGCAATACAAACAACAACAGCAACTATTTCTGGTTTTCGTATAGTAGAACCTATGTTGGTCGGACTCTTCAAAAATGTCTATTGATGCGCGTCAGATACTCCAAAAAATAGTGTATTTTTGGAGAATCCAACACGGGTGTGTGGCATGGAAAGTGAAGAGTCCGCACAACTTAGAGTAGAACACAATAAGTTTCTAACTTGTACTAAACATCAATCTCCACAACTCTGTATGAACAAATCACTCAACTCTTTTTTTGGCTGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E371737" ref_strand="+" ref_description="SGN-E371737 	[TUS-30-G13]">
      <seq>tgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="102924" stop="106979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103224" g_stop="103313" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103926" g_stop="104163" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104164" i_stop="106076" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106077" g_stop="106142" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106384" g_stop="106675" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="686" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E371737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103224" e_stop="103313"/>
          <exon e_start="103926" e_stop="104163"/>
          <exon e_start="106077" e_stop="106142"/>
          <exon e_start="106384" e_stop="106675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG</genome_strand>
        <mrna_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E282999" ref_strand="+" ref_description="SGN-E282999 	[cLER-17-M8]">
      <seq>tgcagcatacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctgtattagagagcataggggttcgagtgccagactgtaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="102924" stop="106761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103224" g_stop="103313" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103926" g_stop="104163" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104164" i_stop="106076" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106077" g_stop="106142" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106384" g_stop="106461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E282999" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103224" e_stop="103313"/>
          <exon e_start="103926" e_stop="104163"/>
          <exon e_start="106077" e_stop="106142"/>
          <exon e_start="106384" e_stop="106461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</genome_strand>
        <mrna_strand>TGCAGCATACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGTATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E303838" ref_strand="+" ref_description="SGN-E303838 	[cLEX-4-N14]">
      <seq>tttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="105690" stop="106964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105990" g_stop="106142" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106384" g_stop="106664" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="434" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E303838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105990" e_stop="106142"/>
          <exon e_start="106384" e_stop="106664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTA</genome_strand>
        <mrna_strand>TTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E344901" ref_strand="+" ref_description="SGN-E344901 	[cTOF-21-P5]">
      <seq>gactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgntgagtttgtaatgggaagtgttccagtcagttactaaataggattcaaggtgtgttttatgatttcccatttgagagccatttacaatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="105800" stop="108009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106100" g_stop="106142" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106384" g_stop="106675" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="335" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107373" g_stop="107710" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="673" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E344901" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106100" e_stop="106142"/>
          <exon e_start="106384" e_stop="106675"/>
          <exon e_start="107373" e_stop="107710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAA</genome_strand>
        <mrna_strand>GACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGNTGAGTTTGTAATGGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAGGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E371736" ref_strand="-" ref_description="SGN-E371736 	[TUS-30-G13]">
      <seq>agtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttatttctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="106105" stop="108125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106405" g_stop="106675" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107373" g_stop="107833" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="732" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E371736" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371736" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106405" e_stop="106675"/>
          <exon e_start="107373" e_stop="107833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</genome_strand>
        <mrna_strand>AGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E354147" ref_strand="+" ref_description="SGN-E354147 	[cTOS-16-L10]">
      <seq>tggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaaagtgttcagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccattttacatgtaatgaatcatggtgtaacacgaaaatatcatattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="106118" stop="108047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106418" g_stop="106675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107373" g_stop="107747" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="633" r_length="375" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E354147" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106418" e_stop="106675"/>
          <exon e_start="107373" e_stop="107747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGG-AAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTT</genome_strand>
        <mrna_strand>TGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAAGTGTT-CAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTTACATGTAATGAATCATGGTGTAACACGAAAATATCATATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_ests_tomato" ref_id="SGN-E303494" ref_strand="+" ref_description="SGN-E303494 	[cLEX-2-M16]">
      <seq>aagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="106356" stop="108114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106656" g_stop="106675" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107373" g_stop="107823" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="471" r_length="451" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="SGN-E303494" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106656" e_stop="106675"/>
          <exon e_start="107373" e_stop="107823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAA</genome_strand>
        <mrna_strand>AAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>66</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="23790" PGL_stop="21899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23790" e_stop="23234"/>
            <exon e_start="22104" e_stop="21899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23790" e_stop="23234" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23233" i_stop="22105" i_length="1129"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="22104" e_stop="21899" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23790" stop="23234"/>
              <exon start="22104" stop="22069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23789" stop="23234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23780" stop="23234"/>
              <exon start="22104" stop="21899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG : GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGTTTTGTTTTTTGGAATTTCTTT</gDNA_template>
            <first_frame> K  N  Y  I  I  S  F  L  N  F  F  Y  F  F  L  K  K  *  N  T  K  L  F  F  *  L  L  S  S  S  N  F  Q  P  *  H  Y  L  K  H  P  L  L  V  Q  Q  T  S  H  K  S  *  K  K  Q  A  N  S  Q  H  *  L  D  *  *  K  Y  H  K  L  V  I  K  S  T  H  N  *  T  I  Q  I  K  G  M  G  *  L  F  L  H  Q  Q  I  M  H  F  L  A  *  N  Q  A  Q  *  I  H  *  V  H  N  N  K  F  N  W  C  N  F  M  F  Y  Q  I  S  F  Q  C  H  N  F  K  L  L  V  T  L  *  E  H  K  L  V  I  L  L  P  E  T  S  R  *  T  *  R  R  P  V  I  K  S  M  S  L  P  E  L  M  M  L  L  L  L  T  Q  F  I  L  M  V  S  L  L  F  I  R :   L  I  K  C  F  N  L  *  V  S  L  L  L  R  L  R  Q  W  H  R  L  R  Q  R  *  N  Q  R  A  S  L  R  Q  D  *  T  L  P  P  A  T  T  T  C  R  R  R  M  I  P  V  L  R  G  L  P  C  T  A  Q  R  F  C  F  L  E  F  L  </first_frame>
            <second_frame>  R  T  T  S  F  P  S  *  I  F  F  I  F  F  *  K  N  E  T  P  N  Y  F  F  N  Y  Y  H  P  P  I  F  N  L  N  T  I  S  N  T  P  F  W  S  N  K  H  H  T  N  P  R  K  S  R  P  I  H  N  I  N  *  T  N  E  S  I  T  S  *  *  S  N  Q  H  T  I  K  Q  F  K  S  R  E  W  D  D  Y  F  C  T  N  R  *  C  I  F  *  P  K  I  R  H  N  K  Y  T  K  C  T  T  T  S  S  I  G  A  I  S  C  F  T  K  F  H  F  N  V  T  I  S  N  Y  *  *  P  F  E  N  T  S  W  *  F  Y  S  R  R  L  P  V  K  R  N  D  V  R  *  S  S  Q  C  L  Y  R  S  *  *  C  Y  Y  C  *  H  N  L  Y  *  W  S  A  C  C  L  S   : G  *  *  S  A  S  T  Y  E  Y  L  C  C  S  G  S  G  N  G  T  D  S  G  N  V  E  T  K  E  Q  V  S  G  R  I  E  P  Y  L  R  Q  R  R  L  A  G  G  G  *  F  R  C  *  E  D  C  H  A  R  H  N  G  F  V  F  W  N  F  F </second_frame>
            <third_frame>   E  L  H  H  F  L  L  E  F  F  L  F  F  F  K  K  M  K  H  Q  I  I  F  L  I  I  I  I  L  Q  F  S  T  L  T  L  S  Q  T  P  P  S  G  P  T  N  I  T  Q  I  L  E  K  A  G  Q  F  T  T  L  I  R  L  M  K  V  S  Q  V  S  D  Q  I  N  T  Q  L  N  N  S  N  Q  G  N  G  M  T  I  F  A  P  T  D  N  A  F  S  S  L  K  S  G  T  I  N  T  L  S  A  Q  Q  Q  V  Q  L  V  Q  F  H  V  L  P  N  F  I  S  M  S  Q  F  Q  T  I  S  N  P  L  R  T  Q  A  G  D  S  T  P  G  D  F  P  L  N  V  T  T  S  G  N  Q  V  N  V  S  T  G  V  D  D  A  T  I  A  N  T  I  Y  T  D  G  Q  L  A  V  Y  Q  :  V  D  K  V  L  Q  P  M  S  I  F  A  A  P  A  P  A  M  A  P  T  P  A  T  L  K  P  K  S  K  S  P  A  G  L  N  P  T  S  G  N  D  D  L  P  A  A  D  D  S  G  V  E  R  I  A  M  H  G  T  T  V  L  F  F  G  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23788" stop="23234"/>
                    <exon start="22104" stop="21901"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELHHFLLEFFLFFFKKMKHQIIFLIIIILQFSTLTLSQTPPSGPTNITQILEKAGQFTTLIRLMKVSQVSDQINTQLNNSNQGNGMTIFAPTDNAFSSLKSGTINTLSAQQQVQLVQFHVLPNFISMSQFQTISNPLRTQAGDSTPGDFPLNVTTSGNQVNVSTGVDDATIANTIYTDGQLAVYQVDKVLQPMSIFAAPAPAMAPTPATLKPKSKSPAGLNPTSGNDDLPAADDSGVERIAMHGTTVLFFGIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30624" PGL_stop="27466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30624" e_stop="30206"/>
            <exon e_start="30108" e_stop="29934"/>
            <exon e_start="29883" e_stop="29879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.928" acc_prob="0.706" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30624" e_stop="30206" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30108" e_stop="29934" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.706">
            <gDNA_intron_boundary i_start="29933" i_stop="29884" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="29883" e_stop="29879" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30624" stop="30206"/>
              <exon start="30108" stop="29934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30624" stop="30206"/>
              <exon start="30108" stop="29961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30355" stop="30206"/>
              <exon start="30108" stop="29934"/>
              <exon start="29883" stop="29879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG : AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG : ATACG</gDNA_template>
            <first_frame> A  R  D  *  P  H  P  L  P  S  Y  *  Y  *  *  F  F  L  I  S  T  *  H  K  R  D  *  I  *  I  Q  A  N  K  V  Y  M  N  *  *  M  L  S  N  M  C  T  L  Y  G  R  K  I  V  V  T  N  H  *  T  L  L  A  T  F  T  T  I  A  I  K  F  F  R  V  S  I  Y  L  T  L  L  F  R  T  P  S  H  K  K  H  H  N  L  L  *  F  S  L  K  I  V  Q  K  R  S  H  R  Q  A  W  S  Q  V  F  C  W  V  K  M  I  Q  S  V  C  V  R  A  S  A  L  P  L  P  P  I  D  S  H  R :   N  A  A  M  A  N  S  F  A  I  D  A  Q  N  L  S  Y  S  V  V  S  K  Q  G  K  I  L  P  I  L  K  D  C  S  L  Q  V  P  S  G  Q  F  W  M  L  L  G  P  N  G  C  G  K  S  T  L  L  K  :  I   </first_frame>
            <second_frame>  R  E  I  S  L  I  P  S  P  L  I  S  I  S  S  F  F  *  F  L  L  N  I  S  V  I  K  F  K  F  K  L  T  K  F  T  *  I  D  K  C  F  R  T  C  A  L  Y  T  D  G  K  *  *  L  L  I  T  K  L  C  *  L  P  L  L  R  *  Q  *  S  F  F  V  F  Q  F  I  *  H  S  Y  S  E  H  L  H  I  K  N  I  I  I  Y  Y  N  F  L  *  K  L  F  K  K  E  A  I  D  K  L  G  V  K  F  F  V  G  *  K  *  Y  N  L  F  V  F  E  L  Q  L  C  H  C  H  P  L  I  L  T   : E  M  P  Q  W  Q  T  V  L  Q  L  M  L  K  I  L  A  I  Q  L  S  Q  N  K  E  K  Y  F  Q  F  L  K  I  V  H  Y  K  F  L  L  D  N  S  G  C  F  W  D  L  M  V  V  E  N  Q  P  F  *  R :   Y  </second_frame>
            <third_frame>   E  R  L  A  S  S  P  P  L  L  L  V  L  V  V  F  S  D  F  Y  L  T  *  A  *  L  N  L  N  S  S  *  Q  S  L  H  E  L  I  N  A  F  E  H  V  H  F  I  R  T  E  N  S  S  Y  *  S  L  N  F  A  S  Y  L  Y  Y  D  S  N  K  V  F  S  C  F  N  L  F  D  T  L  I  P  N  T  F  T  *  K  T  S  *  F  T  I  I  F  F  K  N  C  S  K  K  K  P  *  T  S  L  E  S  S  F  L  L  G  K  N  D  T  I  C  L  C  S  S  F  S  S  A  I  A  T  H  *  F  S  Q  :  K  C  R  N  G  K  Q  F  C  N  *  C  S  K  S  *  L  F  S  C  L  K  T  R  K  N  T  S  N  S  *  R  L  F  T  T  S  S  F  W  T  I  L  D  A  F  G  T  *  W  L  W  K  I  N  P  F  K   : D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30336" stop="30206"/>
                    <exon start="30108" stop="29934"/>
                    <exon start="29883" stop="29881"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKIVQKRSHRQAWSQVFCWVKMIQSVCVRASALPLPPIDSHRNAAMANSFAIDAQNLSYSVVSKQGKILPILKDCSLQVPSGQFWMLLGPNGCGKSTLLKI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30263" stop="30206"/>
                    <exon start="30108" stop="29936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNLFVFELQLCHCHPLILTEMPQWQTVLQLMLKILAIQLSQNKEKYFQFLKIVHYKFLLDNSGCFWDLMVVENQPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30624" e_stop="30206"/>
            <exon e_start="30108" e_stop="29934"/>
            <exon e_start="29080" e_stop="28994"/>
            <exon e_start="27591" e_stop="27466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30624" e_stop="30206" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30205" i_stop="30109" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30108" e_stop="29934" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29933" i_stop="29081" i_length="853"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="29080" e_stop="28994" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28993" i_stop="27592" i_length="1402"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="27591" e_stop="27466" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30624" stop="30206"/>
              <exon start="30108" stop="29934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30624" stop="30206"/>
              <exon start="30108" stop="29961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30348" stop="30206"/>
              <exon start="30108" stop="29934"/>
              <exon start="29080" stop="28994"/>
              <exon start="27591" stop="27466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG : AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG : ATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG : GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</gDNA_template>
            <first_frame> A  R  D  *  P  H  P  L  P  S  Y  *  Y  *  *  F  F  L  I  S  T  *  H  K  R  D  *  I  *  I  Q  A  N  K  V  Y  M  N  *  *  M  L  S  N  M  C  T  L  Y  G  R  K  I  V  V  T  N  H  *  T  L  L  A  T  F  T  T  I  A  I  K  F  F  R  V  S  I  Y  L  T  L  L  F  R  T  P  S  H  K  K  H  H  N  L  L  *  F  S  L  K  I  V  Q  K  R  S  H  R  Q  A  W  S  Q  V  F  C  W  V  K  M  I  Q  S  V  C  V  R  A  S  A  L  P  L  P  P  I  D  S  H  R :   N  A  A  M  A  N  S  F  A  I  D  A  Q  N  L  S  Y  S  V  V  S  K  Q  G  K  I  L  P  I  L  K  D  C  S  L  Q  V  P  S  G  Q  F  W  M  L  L  G  P  N  G  C  G  K  S  T  L  L  K  :  I  L  A  G  L  L  S  P  D  D  G  F  L  Y  V  E  R  P  R  S  F  V  Y  Q  N  P  D  H  Q  :  V  V  M  P  T  V  E  A  D  V  A  F  G  L  G  K  L  N  L  T  P  N  E  I  K  T  R  V  A  K  A  L  D  A  V  G  M  Y  E  Y  L  K </first_frame>
            <second_frame>  R  E  I  S  L  I  P  S  P  L  I  S  I  S  S  F  F  *  F  L  L  N  I  S  V  I  K  F  K  F  K  L  T  K  F  T  *  I  D  K  C  F  R  T  C  A  L  Y  T  D  G  K  *  *  L  L  I  T  K  L  C  *  L  P  L  L  R  *  Q  *  S  F  F  V  F  Q  F  I  *  H  S  Y  S  E  H  L  H  I  K  N  I  I  I  Y  Y  N  F  L  *  K  L  F  K  K  E  A  I  D  K  L  G  V  K  F  F  V  G  *  K  *  Y  N  L  F  V  F  E  L  Q  L  C  H  C  H  P  L  I  L  T   : E  M  P  Q  W  Q  T  V  L  Q  L  M  L  K  I  L  A  I  Q  L  S  Q  N  K  E  K  Y  F  Q  F  L  K  I  V  H  Y  K  F  L  L  D  N  S  G  C  F  W  D  L  M  V  V  E  N  Q  P  F  *  R :   Y  *  Q  V  Y  *  V  Q  M  M  V  S  C  M  W  R  G  Q  G  A  L  C  I  R  I  L  I  I  R :   S  *  C  Q  Q  W  K  L  M  S  L  L  V  L  V  N  *  T  *  H  Q  M  R  L  R  L  G  W  Q  K  L  W  M  Q  L  G  C  M  N  I  *   </second_frame>
            <third_frame>   E  R  L  A  S  S  P  P  L  L  L  V  L  V  V  F  S  D  F  Y  L  T  *  A  *  L  N  L  N  S  S  *  Q  S  L  H  E  L  I  N  A  F  E  H  V  H  F  I  R  T  E  N  S  S  Y  *  S  L  N  F  A  S  Y  L  Y  Y  D  S  N  K  V  F  S  C  F  N  L  F  D  T  L  I  P  N  T  F  T  *  K  T  S  *  F  T  I  I  F  F  K  N  C  S  K  K  K  P  *  T  S  L  E  S  S  F  L  L  G  K  N  D  T  I  C  L  C  S  S  F  S  S  A  I  A  T  H  *  F  S  Q  :  K  C  R  N  G  K  Q  F  C  N  *  C  S  K  S  *  L  F  S  C  L  K  T  R  K  N  T  S  N  S  *  R  L  F  T  T  S  S  F  W  T  I  L  D  A  F  G  T  *  W  L  W  K  I  N  P  F  K   : D  I  S  R  S  I  E  S  R  *  W  F  L  V  C  G  E  A  K  E  L  C  V  S  E  S  *  S  S   : G  R  D  A  N  S  G  S  *  C  R  F  W  S  W  *  I  E  L  N  T  K  *  D  *  D  *  G  G  K  S  F  G  C  S  W  D  V  *  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30336" stop="30206"/>
                    <exon start="30108" stop="29934"/>
                    <exon start="29080" stop="28994"/>
                    <exon start="27591" stop="27466"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKIVQKRSHRQAWSQVFCWVKMIQSVCVRASALPLPPIDSHRNAAMANSFAIDAQNLSYSVVSKQGKILPILKDCSLQVPSGQFWMLLGPNGCGKSTLLKILAGLLSPDDGFLYVERPRSFVYQNPDHQVVMPTVEADVAFGLGKLNLTPNEIKTRVAKALDAVGMYEYLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39866" PGL_stop="41351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39866" e_stop="39919"/>
            <exon e_start="40010" e_stop="40076"/>
            <exon e_start="40158" e_stop="40250"/>
            <exon e_start="40359" e_stop="40508"/>
            <exon e_start="40655" e_stop="40743"/>
            <exon e_start="40853" e_stop="40958"/>
            <exon e_start="41055" e_stop="41142"/>
            <exon e_start="41237" e_stop="41351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.972" e_score="0.989"/>
          <exon-intron don_prob="0.968" acc_prob="0.002" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39866" e_stop="39919" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.924">
            <gDNA_intron_boundary i_start="39920" i_stop="40009" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40010" e_stop="40076" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40077" i_stop="40157" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="40158" e_stop="40250" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40251" i_stop="40358" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40359" e_stop="40508" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.002">
            <gDNA_intron_boundary i_start="40509" i_stop="40654" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40655" e_stop="40743" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.869" acc_prob="0.989">
            <gDNA_intron_boundary i_start="40744" i_stop="40852" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40853" e_stop="40958" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.738" acc_prob="0.950">
            <gDNA_intron_boundary i_start="40959" i_stop="41054" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41055" e_stop="41142" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.862" acc_prob="0.983">
            <gDNA_intron_boundary i_start="41143" i_stop="41236" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41237" e_stop="41351" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39866" stop="39919"/>
              <exon start="40010" stop="40076"/>
              <exon start="40158" stop="40250"/>
              <exon start="40359" stop="40508"/>
              <exon start="40655" stop="40743"/>
              <exon start="40853" stop="40958"/>
              <exon start="41055" stop="41080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40433" stop="40508"/>
              <exon start="40655" stop="40743"/>
              <exon start="40853" stop="40958"/>
              <exon start="41055" stop="41142"/>
              <exon start="41237" stop="41351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG : TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG : GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG : ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT : ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG : GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG : TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG : GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</gDNA_template>
            <first_frame> L  I  C  S  Y  K  D  W  A  L  C  L  C  R  M  E  L  W  :  W  V  S  S  L  V  A  F  H  S  W  N  *  I  S  N  R  Q  *  T  V  Q   : G  R  N  E  A  I  H  S  *  N  C  *  H  D  Q  A  R  K  S  I  C  I  P  G  W  A  G  Y  L  V  S   : D  R  K  *  V  W  Q  W  *  Y  *  V  S  L  W  S  S  C  Q  T  L  R  E  L  G  S  I  N  G  Y  V  F  K  Y  G  S  A  M  G  Y  V  S  A  T  R  C  P  S  F  R   : Y  *  H  L  Q  W  I  L  L  *  P  I  Q  A  K  F  R  *  N  T  Q  D  V  D  *  E  L  D  R  M  :  V  S  V  V  W  W  S  C  P  L  Q  T  S  G  R  H  R  F  R  C  G  S  I  F  P  A  R  R  N  F  P  E  L  L  H   : V  P  R  G  N  *  L  W  E  N  Q  W  W  T  V  Y  C  N  *  L  *  L  *  C  S  F  R  *  V  R :   A  Y  K  S  T  K  M  G  S  L  E  R  S  P  *  S  H  K  A  L  *  G  C  N  G  G  N  R  T  K  H  H  F  S  G  L  *  Y </first_frame>
            <second_frame>  L  F  V  H  I  R  I  G  P  Y  V  C  A  E  W  N  Y  G :   G  F  P  L  W  L  H  F  I  P  G  I  E  F  R  T  D  N  E  P  F  K  :  A  E  M  K  R  F  T  A  K  I  V  D  M  I  K  Q  E  N  L  Y  A  S  Q  G  G  P  V  I  L  S  Q  :  I  E  N  E  Y  G  N  G  D  I  E  S  R  Y  G  P  R  A  K  P  Y  V  N  W  A  A  S  M  A  T  S  L  N  T  G  V  P  W  V  M  C  Q  Q  P  D  A  P  P  S  V  :  I  N  T  C  N  G  F  Y  C  D  Q  F  K  Q  N  S  D  K  T  P  K  M  W  T  E  N  W  T  G  W :   F  L  S  F  G  G  P  V  P  Y  R  P  V  E  D  I  A  F  A  V  A  R  F  F  Q  R  G  G  T  F  Q  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  S  G  G  P  F  I  A  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  I  N  Q  P  K  W  G  H  L  K  D  L  H  K  A  I  K  L  C  E  A  A  M  V  A  T  E  P  N  I  T  S  L  G  S  N   </second_frame>
            <third_frame>   Y  L  F  I  *  G  L  G  L  M  F  V  Q  N  G  T  M   : V  G  F  L  F  G  C  I  S  F  L  E  L  N  F  E  P  T  M  N  R  S  R :   Q  K  *  S  D  S  Q  L  K  L  L  T  *  S  S  K  K  I  Y  M  H  P  R  V  G  R  L  S  C  L  R :   *  K  M  S  M  A  M  V  I  L  S  L  V  M  V  L  V  P  N  L  T  *  T  G  Q  H  Q  W  L  R  L  *  I  R  E  C  H  G  L  C  V  S  N  Q  M  P  L  L  P  L :   L  T  L  A  M  D  F  I  V  T  N  S  S  K  I  P  I  K  H  P  R  C  G  L  R  I  G  P  D   : G  F  C  R  L  V  V  L  S  L  T  D  Q  W  K  T  S  L  S  L  W  L  D  F  S  S  E  A  E  L  S  R  T  I  T  C :   T  T  G  E  L  T  L  G  E  P  V  V  D  R  L  L  Q  L  A  M  T  M  M  L  L  *  M  S  T  :  G  L  *  I  N  Q  N  G  V  T  *  K  I  S  I  K  P  *  S  F  V  R  L  Q  W  W  Q  Q  N  Q  T  S  L  L  W  A  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39867" stop="39919"/>
                    <exon start="40010" stop="40076"/>
                    <exon start="40158" stop="40250"/>
                    <exon start="40359" stop="40508"/>
                    <exon start="40655" stop="40743"/>
                    <exon start="40853" stop="40958"/>
                    <exon start="41055" stop="41142"/>
                    <exon start="41237" stop="41349"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFVHIRIGPYVCAEWNYGGFPLWLHFIPGIEFRTDNEPFKAEMKRFTAKIVDMIKQENLYASQGGPVILSQIENEYGNGDIESRYGPRAKPYVNWAASMATSLNTGVPWVMCQQPDAPPSVINTCNGFYCDQFKQNSDKTPKMWTENWTGWFLSFGGPVPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFIATSYDYDAPLDEYGLINQPKWGHLKDLHKAIKLCEAAMVATEPNITSLGSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41822" PGL_stop="43196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41822" e_stop="41983"/>
            <exon e_start="42070" e_stop="42266"/>
            <exon e_start="42426" e_stop="42535"/>
            <exon e_start="42813" e_stop="42922"/>
            <exon e_start="43087" e_stop="43196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="0.990"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41822" e_stop="41983" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41984" i_stop="42069" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="42070" e_stop="42266" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42267" i_stop="42425" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42426" e_stop="42535" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42536" i_stop="42812" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42813" e_stop="42922" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="42923" i_stop="43086" i_length="164"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="43087" e_stop="43196" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41822" stop="41983"/>
              <exon start="42070" stop="42266"/>
              <exon start="42426" stop="42535"/>
              <exon start="42813" stop="42922"/>
              <exon start="43087" stop="43108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42115" stop="42266"/>
              <exon start="42426" stop="42535"/>
              <exon start="42813" stop="42922"/>
              <exon start="43087" stop="43196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</gDNA_template>
            <first_frame> V  S  V  Y  K  T  D  S  Q  C  A  A  F  L  A  N  T  A  T  Q  S  D  A  A  V  S  F  N  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  A  D  A  S  G  G  S  L  S  G  W  T  S  V  N  E  P  V  G  I  S  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T   </first_frame>
            <second_frame>  S  V  F  I  K  L  I  H  S  V  L  H  F  S  P  I  L  L  R  N  L  M  R  L  *  A  S  M  E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K  L  M  H  L  V  D  P  Y  Q  V  G  L  R  *  M  S  L  *  A  S  Q  M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  </second_frame>
            <third_frame>   Q  C  L  *  N  *  F  T  V  C  C  I  S  R  Q  Y  C  Y  A  I  *  C  G  C  E  L  Q  W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G  S  *  C  I  W  W  I  P  I  R  L  D  F  G  E  *  A  C  R  H  L  K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41822" stop="41983"/>
                    <exon start="42070" stop="42266"/>
                    <exon start="42426" stop="42535"/>
                    <exon start="42813" stop="42922"/>
                    <exon start="43087" stop="43194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSVYKTDSQCAAFLANTATQSDAAVSFNGNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSEADASGGSLSGWTSVNEPVGISNENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41905" e_stop="41983"/>
            <exon e_start="42070" e_stop="42117"/>
            <exon e_start="42181" e_stop="42266"/>
            <exon e_start="42426" e_stop="42535"/>
            <exon e_start="42813" e_stop="42922"/>
            <exon e_start="43087" e_stop="43196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.958"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="0.942"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41905" e_stop="41983" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41984" i_stop="42069" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="42070" e_stop="42117" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42118" i_stop="42180" i_length="63"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="42181" e_stop="42266" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42267" i_stop="42425" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42426" e_stop="42535" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42536" i_stop="42812" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42813" e_stop="42922" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="42923" i_stop="43086" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43087" e_stop="43196" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41905" stop="41983"/>
              <exon start="42070" stop="42117"/>
              <exon start="42181" stop="42266"/>
              <exon start="42426" stop="42535"/>
              <exon start="42813" stop="42922"/>
              <exon start="43087" stop="43196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAA : AATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</gDNA_template>
            <first_frame> W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G   : K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I </first_frame>
            <second_frame>  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  :  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T   </second_frame>
            <third_frame>   E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K :   M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41906" stop="41983"/>
                    <exon start="42070" stop="42117"/>
                    <exon start="42181" stop="42266"/>
                    <exon start="42426" stop="42535"/>
                    <exon start="42813" stop="42922"/>
                    <exon start="43087" stop="43194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSENENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="44260" PGL_stop="49022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44620" e_stop="44730"/>
            <exon e_start="45067" e_stop="45367"/>
            <exon e_start="47160" e_stop="47175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="0.987"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="44620" e_stop="44730" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="45067" e_stop="45367" e_length="301"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="45368" i_stop="47159" i_length="1792"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="47160" e_stop="47175" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44620" stop="44730"/>
              <exon start="45067" stop="45367"/>
              <exon start="47160" stop="47175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218144" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44678" stop="44730"/>
              <exon start="45067" stop="45367"/>
              <exon start="47160" stop="47175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217924" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : ACAGAAAATAAACACT</gDNA_template>
            <first_frame> Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : N  R  K  *  T   </first_frame>
            <second_frame>  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  T  E  N  K  H  </second_frame>
            <third_frame>   S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   Q  K  I  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44620" stop="44730"/>
                    <exon start="45067" stop="45174"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44522" e_stop="44730"/>
            <exon e_start="45067" e_stop="45372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="0.990"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="44522" e_stop="44730" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="45067" e_stop="45372" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44522" stop="44730"/>
              <exon start="45067" stop="45372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283049" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTT</gDNA_template>
            <first_frame> L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  L   </first_frame>
            <second_frame>  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  Y  F  </second_frame>
            <third_frame>   D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44524" stop="44730"/>
                    <exon start="45067" stop="45174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44260" e_stop="44275"/>
            <exon e_start="44394" e_stop="44730"/>
            <exon e_start="45067" e_stop="45367"/>
            <exon e_start="48000" e_stop="48036"/>
            <exon e_start="49005" e_stop="49022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.762" acc_prob="0.739" e_score="0.622"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44260" e_stop="44275" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="0.961">
            <gDNA_intron_boundary i_start="44276" i_stop="44393" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44730" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44731" i_stop="45066" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="45067" e_stop="45367" e_length="301"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45368" i_stop="47999" i_length="2632"/>
          </intron>
          <exon e_serial="4" e_score="0.622">
            <gDNA_exon_boundary e_start="48000" e_stop="48036" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.762" acc_prob="0.739">
            <gDNA_intron_boundary i_start="48037" i_stop="49004" i_length="968"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="49005" e_stop="49022" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44260" stop="44275"/>
              <exon start="44394" stop="44730"/>
              <exon start="45067" stop="45367"/>
              <exon start="48000" stop="48036"/>
              <exon start="49005" stop="49022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : AAGAAAAAATTCAACTAAAAGAAAATTAACAATTACG : GAAAAAAAAAAACTTAAA</gDNA_template>
            <first_frame> N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  K  K  K  F  N  *  K  K  I  N  N  Y   : G  K  K  K  T  *  </first_frame>
            <second_frame>  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   R  K  N  S  T  K  R  K  L  T  I  T  :  E  K  K  K  L  K </second_frame>
            <third_frame>   P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : K  E  K  I  Q  L  K  E  N  *  Q  L  R :   K  K  K  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44262" stop="44275"/>
                    <exon start="44394" stop="44730"/>
                    <exon start="45067" stop="45174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56482" PGL_stop="50487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56482" e_stop="56213"/>
            <exon e_start="56130" e_stop="56003"/>
            <exon e_start="54762" e_stop="54675"/>
            <exon e_start="52618" e_stop="52545"/>
            <exon e_start="52081" e_stop="51890"/>
            <exon e_start="51217" e_stop="51120"/>
            <exon e_start="50844" e_stop="50487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="56482" e_stop="56213" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56130" e_stop="56003" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54762" e_stop="54675" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="54674" i_stop="52619" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52618" e_stop="52545" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52081" e_stop="51890" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51217" e_stop="51120" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275"/>
          </intron>
          <exon e_serial="7" e_score="0.944">
            <gDNA_exon_boundary e_start="50844" e_stop="50487" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56482" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56383" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56346" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56344" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54675"/>
              <exon start="52618" stop="52545"/>
              <exon start="52081" stop="51890"/>
              <exon start="51217" stop="51132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54736" stop="54675"/>
              <exon start="52618" stop="52545"/>
              <exon start="52081" stop="51890"/>
              <exon start="51217" stop="51120"/>
              <exon start="50844" stop="50643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52052" stop="51890"/>
              <exon start="51217" stop="51120"/>
              <exon start="50844" stop="50487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372757" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51200" stop="51120"/>
              <exon start="50844" stop="50530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213578" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATGCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG : TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG : TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG : GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</gDNA_template>
            <first_frame> D  P  F  F  F  D  F  Q  G  S  V  T  Q  V  A  A  S  *  P  P  T  D  I  M  Q  *  S  K  S  K  T  L  T  K  F  T  L  F  S  I  P  L  N  S  L  A  A  I  A  V  S  R  L  C  F  F  *  Y  P  F  V  N  F  H  C  F  L  I  L  Q  L  E  K  W  L  W  V  F  L  L  Y  R  D  L  S  M  N  T  L  Q  :  F  *  K  D  W  E  *  K  V  W  R  *  E  S  Q  S  S  C  *  M  L  A  P  *  S  S  L  V  G  R  A  P  P  W  P  S  W  L  S  S  T  I  C :   S  L  L  C  V  S  L  F  K  W  G  S  Q  Y  G  G  H  V  Q  V  S  F  S  W  Q  I  R  P  L  :  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  T  L  L  I  H  K  Y  N  N  N  Y  V  S  F   </first_frame>
            <second_frame>  I  L  F  F  S  I  F  K  E  V  *  R  R  W  P  P  L  S  R  Q  Q  I  L  C  S  E  A  K  A  K  H  S  P  N  S  P  F  F  L  Y  P  *  T  P  *  P  Q  L  L  F  Q  D  C  V  F  F  S  T  L  L  L  I  F  I  V  S  *  F  C  N  L  K  N  G  C  G  C  S  C  F  T  G  I  F  Q  *  T  H  C  S :   F  E  K  I  G  S  E  R  C  G  G  E  K  A  R  A  V  A  E  C  *  L  P  N  H  P  W  W  G  E  H  H  H  G  Q  V  G  *  A  P  Q  F   : V  P  C  F  A  *  V  C  S  N  G  E  A  S  M  G  D  M  C  R  S  H  F  L  G  K  *  G  H  W :   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S  H  S  S  S  T  N  T  I  I  I  T  S  H  S  </second_frame>
            <third_frame>   S  F  F  F  R  F  S  R  K  C  D  A  G  G  R  L  L  A  A  N  R  Y  Y  A  V  K  Q  K  Q  N  T  H  Q  I  H  P  F  F  Y  T  L  K  L  L  S  R  N  C  C  F  K  I  V  F  F  L  V  P  F  C  *  F  S  L  F  L  D  F  A  T  *  K  M  V  V  G  V  L  A  L  Q  G  S  F  N  E  H  I  A   : V  L  K  R  L  G  V  K  G  V  E  V  R  K  P  E  Q  L  L  N  V  S  S  L  I  I  P  G  G  E  S  T  T  M  A  K  L  A  E  L  H  N  L  :  F  P  A  L  R  E  F  V  Q  M  G  K  P  V  W  G  T  C  A  G  L  I  F  L  A  N  K  A  T   : G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S  H  T  P  H  P  Q  I  Q  *  *  L  R  L  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56267" stop="56213"/>
                    <exon start="56130" stop="56003"/>
                    <exon start="54762" stop="54675"/>
                    <exon start="52618" stop="52545"/>
                    <exon start="52081" stop="51890"/>
                    <exon start="51217" stop="51120"/>
                    <exon start="50844" stop="50721"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQLLNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52619" e_stop="52545"/>
            <exon e_start="52081" e_stop="51890"/>
            <exon e_start="51217" e_stop="51120"/>
            <exon e_start="50844" e_stop="50487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52619" e_stop="52545" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52081" e_stop="51890" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51217" e_stop="51120" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="50844" e_stop="50487" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52619" stop="52545"/>
              <exon start="52081" stop="51890"/>
              <exon start="51217" stop="51120"/>
              <exon start="50844" stop="50643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316019" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52052" stop="51890"/>
              <exon start="51217" stop="51120"/>
              <exon start="50844" stop="50487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372757" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51200" stop="51120"/>
              <exon start="50844" stop="50530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213578" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</gDNA_template>
            <first_frame> G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S  H  T  P  H  P  Q  I  Q  *  *  L  R  L  I  P </first_frame>
            <second_frame>  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  T  L  L  I  H  K  Y  N  N  N  Y  V  S  F   </second_frame>
            <third_frame>   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S  H  S  S  S  T  N  T  I  I  I  T  S  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52619" stop="52545"/>
                    <exon start="52081" stop="51890"/>
                    <exon start="51217" stop="51120"/>
                    <exon start="50844" stop="50721"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58524" PGL_stop="65746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58524" e_stop="58543"/>
            <exon e_start="59774" e_stop="60007"/>
            <exon e_start="60502" e_stop="60910"/>
            <exon e_start="61082" e_stop="61156"/>
            <exon e_start="61246" e_stop="61290"/>
            <exon e_start="61833" e_stop="61909"/>
            <exon e_start="62042" e_stop="62129"/>
            <exon e_start="62216" e_stop="62340"/>
            <exon e_start="63783" e_stop="63878"/>
            <exon e_start="64201" e_stop="64267"/>
            <exon e_start="64404" e_stop="64519"/>
            <exon e_start="64604" e_stop="64682"/>
            <exon e_start="64990" e_stop="65526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.707" e_score="0.996"/>
          <exon-intron don_prob="0.958" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58524" e_stop="58543" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58544" i_stop="59773" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59774" e_stop="60007" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.707">
            <gDNA_intron_boundary i_start="60008" i_stop="60501" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60502" e_stop="60910" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60911" i_stop="61081" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61082" e_stop="61156" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.775">
            <gDNA_intron_boundary i_start="61157" i_stop="61245" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61246" e_stop="61290" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61291" i_stop="61832" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61833" e_stop="61909" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61910" i_stop="62041" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62042" e_stop="62129" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.382">
            <gDNA_intron_boundary i_start="62130" i_stop="62215" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62216" e_stop="62340" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63783" e_stop="63878" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64201" e_stop="64267" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64404" e_stop="64519" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64604" e_stop="64682" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307"/>
          </intron>
          <exon e_serial="13" e_score="0.935">
            <gDNA_exon_boundary e_start="64990" e_stop="65526" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58524" stop="58543"/>
              <exon start="59774" stop="60007"/>
              <exon start="60502" stop="60607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59917" stop="60007"/>
              <exon start="60502" stop="60910"/>
              <exon start="61082" stop="61156"/>
              <exon start="61246" stop="61290"/>
              <exon start="61833" stop="61901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60893" stop="60910"/>
              <exon start="61082" stop="61156"/>
              <exon start="61246" stop="61290"/>
              <exon start="61833" stop="61909"/>
              <exon start="62042" stop="62129"/>
              <exon start="62216" stop="62340"/>
              <exon start="63783" stop="63878"/>
              <exon start="64201" stop="64263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62052" stop="62129"/>
              <exon start="62216" stop="62340"/>
              <exon start="63783" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547619" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTTTCCCAACTTTAAG : AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG : GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG : GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG : GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG : GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGA : GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG : TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTT</gDNA_template>
            <first_frame> *  S  F  P  T  L  R :   G  V  I  H  L  C  D  E  A  P  T  L  V  T  N  G  R  F  W  P  D  I  D  L  L  S  V  V  I  I  N  W  N  S  H  D  V  V  V  Q  S  H  R  N  Q  F  D  *  L  L  L  S  F  C  *  M  A  S  D  *  I  T  K  L  N  S  G  G  C  P  N  S  V  F  L  F  L  R :   F  L  N  Q  I  V  R  L  C  C  I  L  V  Y  S  T  G  T  Y  F  L  L  F  W  M  S  V  M  M  H  S  V  D  E  V  T  E  M  G  C  C  G  C  F  G  F  S  F  A  R  K  P  K  K  E  I  R  P  N  R  G  Y  G  N  S  W  S  H  E  P  L  L  Q  Q  E  A  E  E  V  E  D  D  G  F  D  S  G  D  I  I  D  T  G  S  E  D  D  E  V  C  H  S  P  V  K  R  Y  Q  E  I  L  M  E  R  A  Q  N  G  L  I  C  R  E  I  P  V  K  E  T  H  K  V  V  R  T  E  :  D  E  D  G  N  K  M  V  N  E  Y  V  R  E  H  K  I  G  A  G  S  Y  G  K  V  :  V  L  Y  R  S  C  T  D  G  K  H  Y  A  I  K  :  A  F  H  K  S  H  L  S  K  M  R  V  A  P  S  E  T  A  M  G  D  V  L  R  E  E :   F  R  S  *  K  C  C  A  I  P  I  *  L  I  L  L  R  *  L  M  I  Q  K  Q  I  T  S  T  W  :  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  V </first_frame>
            <second_frame>  D  L  S  Q  L  *   : E  V  *  S  I  C  V  M  R  L  Q  L  W  *  R  M  E  D  S  G  L  T  L  I  S  C  L  L  L  L  *  I  G  T  L  M  M  S  W  F  N  R  T  G  I  N  L  I  N  C  F  F  H  F  A  E  W  H  P  I  E  *  Q  S  *  T  R  V  D  A  R  I  A  F  S  S  F  *   : G  S  *  I  K  L  F  D  C  A  V  Y  *  C  T  P  L  G  R  I  F  C  Y  F  G  C  L  *  *  C  I  L  L  M  K  L  Q  K  W  G  A  V  D  V  L  D  S  L  L  Q  E  N  Q  K  R  K  L  G  L  I  G  D  M  E  T  A  G  H  M  N  H  C  Y  N  K  R  L  K  K  S  K  M  M  A  L  I  V  A  I  *  L  I  L  A  V  R  M  M  K  C  V  T  A  R  L  N  V  I  K  R  F  S  W  K  E  L  R  M  G  *  F  A  G  R  S  L  S  R  K  H  T  K  L  C  A  Q  R :   M  K  M  G  T  R  W  L  T  N  M  S  V  N  T  K  L  V  L  V  A  T  V  K  W :   Y  F  I  E  V  A  L  M  E  N  I  M  P  L  R :   P  F  T  S  L  T  Y  Q  R  C  G  W  R  L  Q  K  L  L  W  V  M  F  F  V  R   : S  F  D  H  E  N  A  V  P  S  Q  Y  S  *  S  C  *  G  D  *  *  S  R  N  R  *  L  L  H  G :   S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  K   </second_frame>
            <third_frame>   I  F  P  N  F  K  :  R  C  N  P  F  V  *  *  G  S  N  S  G  D  E  W  K  I  L  A  *  H  *  S  L  V  C  C  Y  Y  K  L  E  L  S  *  C  R  G  S  I  A  Q  E  S  I  *  L  T  A  S  F  I  L  L  N  G  I  R  L  N  N  K  V  E  L  G  W  M  P  E  *  R  F  P  L  F  K  :  V  L  E  S  N  C  S  I  V  L  Y  I  S  V  L  H  W  D  V  F  S  V  I  L  D  V  C  D  D  A  F  C  *  *  S  Y  R  N  G  V  L  W  M  F  W  I  L  F  C  K  K  T  K  K  G  N  *  A  *  *  G  I  W  K  Q  L  V  T  *  T  I  V  T  T  R  G  *  R  S  R  R  *  W  L  *  *  W  R  Y  N  *  Y  W  Q  *  G  *  *  S  V  S  Q  P  G  *  T  L  S  R  D  S  H  G  K  S  S  E  W  V  N  L  Q  G  D  P  C  Q  G  N  T  Q  S  C  A  H  R   : G  *  R  W  E  Q  D  G  *  R  I  C  P  *  T  Q  N  W  C  W  *  L  R  *  S   : G  T  L  S  K  L  H  *  W  K  T  L  C  H  *   : G  L  S  Q  V  S  L  I  K  D  A  G  G  A  F  R  N  C  Y  G  *  C  S  S  *  G  :  V  S  I  M  K  M  L  C  H  P  N  I  V  N  L  V  E  V  I  D  D  P  E  T  D  N  F  Y  M   : V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61907" stop="61909"/>
                    <exon start="62042" stop="62129"/>
                    <exon start="62216" stop="62340"/>
                    <exon start="63783" stop="63878"/>
                    <exon start="64201" stop="64267"/>
                    <exon start="64404" stop="64519"/>
                    <exon start="64604" stop="64682"/>
                    <exon start="64990" stop="65141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSIMKMLCHPNIVNLVEVIDDPETDNFYMVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59955" stop="60007"/>
                    <exon start="60502" stop="60910"/>
                    <exon start="61082" stop="61156"/>
                    <exon start="61246" stop="61290"/>
                    <exon start="61833" stop="61909"/>
                    <exon start="62042" stop="62054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKLNSGGCPNSVFLFLRFLNQIVRLCCILVYSTGTYFLLFWMSVMMHSVDEVTEMGCCGCFGFSFARKPKKEIRPNRGYGNSWSHEPLLQQEAEEVEDDGFDSGDIIDTGSEDDEVCHSPVKRYQEILMERAQNGLICREIPVKETHKVVRTEDEDGNKMVNEYVREHKIGAGSYGKVVLYRSCTDGKHYAIKAFHKSHLSKMRVAPSETAMGDVLREEFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58524" e_stop="58543"/>
            <exon e_start="59774" e_stop="60007"/>
            <exon e_start="60502" e_stop="60910"/>
            <exon e_start="61082" e_stop="61156"/>
            <exon e_start="61246" e_stop="61290"/>
            <exon e_start="61833" e_stop="61909"/>
            <exon e_start="62042" e_stop="62129"/>
            <exon e_start="62216" e_stop="62340"/>
            <exon e_start="63783" e_stop="63878"/>
            <exon e_start="64201" e_stop="64267"/>
            <exon e_start="64404" e_stop="64519"/>
            <exon e_start="64604" e_stop="64682"/>
            <exon e_start="64990" e_stop="65523"/>
            <exon e_start="65727" e_stop="65746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.707" e_score="0.996"/>
          <exon-intron don_prob="0.958" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.933"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58524" e_stop="58543" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58544" i_stop="59773" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59774" e_stop="60007" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.707">
            <gDNA_intron_boundary i_start="60008" i_stop="60501" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60502" e_stop="60910" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60911" i_stop="61081" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61082" e_stop="61156" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.775">
            <gDNA_intron_boundary i_start="61157" i_stop="61245" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61246" e_stop="61290" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61291" i_stop="61832" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61833" e_stop="61909" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61910" i_stop="62041" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62042" e_stop="62129" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.382">
            <gDNA_intron_boundary i_start="62130" i_stop="62215" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62216" e_stop="62340" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63783" e_stop="63878" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64201" e_stop="64267" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64404" e_stop="64519" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64604" e_stop="64682" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307"/>
          </intron>
          <exon e_serial="13" e_score="0.933">
            <gDNA_exon_boundary e_start="64990" e_stop="65523" e_length="534"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="65524" i_stop="65726" i_length="203"/>
          </intron>
          <exon e_serial="14" e_score="0.550">
            <gDNA_exon_boundary e_start="65727" e_stop="65746" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58524" stop="58543"/>
              <exon start="59774" stop="60007"/>
              <exon start="60502" stop="60607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59917" stop="60007"/>
              <exon start="60502" stop="60910"/>
              <exon start="61082" stop="61156"/>
              <exon start="61246" stop="61290"/>
              <exon start="61833" stop="61901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60893" stop="60910"/>
              <exon start="61082" stop="61156"/>
              <exon start="61246" stop="61290"/>
              <exon start="61833" stop="61909"/>
              <exon start="62042" stop="62129"/>
              <exon start="62216" stop="62340"/>
              <exon start="63783" stop="63878"/>
              <exon start="64201" stop="64263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62052" stop="62129"/>
              <exon start="62216" stop="62340"/>
              <exon start="63783" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64242" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65523"/>
              <exon start="65727" stop="65746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547568" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTTTCCCAACTTTAAG : AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG : GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG : GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG : GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG : GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGA : GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG : TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAA : TATTACAGAGGCGGAGCCAG</gDNA_template>
            <first_frame> *  S  F  P  T  L  R :   G  V  I  H  L  C  D  E  A  P  T  L  V  T  N  G  R  F  W  P  D  I  D  L  L  S  V  V  I  I  N  W  N  S  H  D  V  V  V  Q  S  H  R  N  Q  F  D  *  L  L  L  S  F  C  *  M  A  S  D  *  I  T  K  L  N  S  G  G  C  P  N  S  V  F  L  F  L  R :   F  L  N  Q  I  V  R  L  C  C  I  L  V  Y  S  T  G  T  Y  F  L  L  F  W  M  S  V  M  M  H  S  V  D  E  V  T  E  M  G  C  C  G  C  F  G  F  S  F  A  R  K  P  K  K  E  I  R  P  N  R  G  Y  G  N  S  W  S  H  E  P  L  L  Q  Q  E  A  E  E  V  E  D  D  G  F  D  S  G  D  I  I  D  T  G  S  E  D  D  E  V  C  H  S  P  V  K  R  Y  Q  E  I  L  M  E  R  A  Q  N  G  L  I  C  R  E  I  P  V  K  E  T  H  K  V  V  R  T  E  :  D  E  D  G  N  K  M  V  N  E  Y  V  R  E  H  K  I  G  A  G  S  Y  G  K  V  :  V  L  Y  R  S  C  T  D  G  K  H  Y  A  I  K  :  A  F  H  K  S  H  L  S  K  M  R  V  A  P  S  E  T  A  M  G  D  V  L  R  E  E :   F  R  S  *  K  C  C  A  I  P  I  *  L  I  L  L  R  *  L  M  I  Q  K  Q  I  T  S  T  W  :  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  :  Y  Y  R  G  G  A   </first_frame>
            <second_frame>  D  L  S  Q  L  *   : E  V  *  S  I  C  V  M  R  L  Q  L  W  *  R  M  E  D  S  G  L  T  L  I  S  C  L  L  L  L  *  I  G  T  L  M  M  S  W  F  N  R  T  G  I  N  L  I  N  C  F  F  H  F  A  E  W  H  P  I  E  *  Q  S  *  T  R  V  D  A  R  I  A  F  S  S  F  *   : G  S  *  I  K  L  F  D  C  A  V  Y  *  C  T  P  L  G  R  I  F  C  Y  F  G  C  L  *  *  C  I  L  L  M  K  L  Q  K  W  G  A  V  D  V  L  D  S  L  L  Q  E  N  Q  K  R  K  L  G  L  I  G  D  M  E  T  A  G  H  M  N  H  C  Y  N  K  R  L  K  K  S  K  M  M  A  L  I  V  A  I  *  L  I  L  A  V  R  M  M  K  C  V  T  A  R  L  N  V  I  K  R  F  S  W  K  E  L  R  M  G  *  F  A  G  R  S  L  S  R  K  H  T  K  L  C  A  Q  R :   M  K  M  G  T  R  W  L  T  N  M  S  V  N  T  K  L  V  L  V  A  T  V  K  W :   Y  F  I  E  V  A  L  M  E  N  I  M  P  L  R :   P  F  T  S  L  T  Y  Q  R  C  G  W  R  L  Q  K  L  L  W  V  M  F  F  V  R   : S  F  D  H  E  N  A  V  P  S  Q  Y  S  *  S  C  *  G  D  *  *  S  R  N  R  *  L  L  H  G :   S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  N :   I  T  E  A  E  P  </second_frame>
            <third_frame>   I  F  P  N  F  K  :  R  C  N  P  F  V  *  *  G  S  N  S  G  D  E  W  K  I  L  A  *  H  *  S  L  V  C  C  Y  Y  K  L  E  L  S  *  C  R  G  S  I  A  Q  E  S  I  *  L  T  A  S  F  I  L  L  N  G  I  R  L  N  N  K  V  E  L  G  W  M  P  E  *  R  F  P  L  F  K  :  V  L  E  S  N  C  S  I  V  L  Y  I  S  V  L  H  W  D  V  F  S  V  I  L  D  V  C  D  D  A  F  C  *  *  S  Y  R  N  G  V  L  W  M  F  W  I  L  F  C  K  K  T  K  K  G  N  *  A  *  *  G  I  W  K  Q  L  V  T  *  T  I  V  T  T  R  G  *  R  S  R  R  *  W  L  *  *  W  R  Y  N  *  Y  W  Q  *  G  *  *  S  V  S  Q  P  G  *  T  L  S  R  D  S  H  G  K  S  S  E  W  V  N  L  Q  G  D  P  C  Q  G  N  T  Q  S  C  A  H  R   : G  *  R  W  E  Q  D  G  *  R  I  C  P  *  T  Q  N  W  C  W  *  L  R  *  S   : G  T  L  S  K  L  H  *  W  K  T  L  C  H  *   : G  L  S  Q  V  S  L  I  K  D  A  G  G  A  F  R  N  C  Y  G  *  C  S  S  *  G  :  V  S  I  M  K  M  L  C  H  P  N  I  V  N  L  V  E  V  I  D  D  P  E  T  D  N  F  Y  M   : V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *   : I  L  Q  R  R  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61907" stop="61909"/>
                    <exon start="62042" stop="62129"/>
                    <exon start="62216" stop="62340"/>
                    <exon start="63783" stop="63878"/>
                    <exon start="64201" stop="64267"/>
                    <exon start="64404" stop="64519"/>
                    <exon start="64604" stop="64682"/>
                    <exon start="64990" stop="65141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSIMKMLCHPNIVNLVEVIDDPETDNFYMVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59955" stop="60007"/>
                    <exon start="60502" stop="60910"/>
                    <exon start="61082" stop="61156"/>
                    <exon start="61246" stop="61290"/>
                    <exon start="61833" stop="61909"/>
                    <exon start="62042" stop="62054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKLNSGGCPNSVFLFLRFLNQIVRLCCILVYSTGTYFLLFWMSVMMHSVDEVTEMGCCGCFGFSFARKPKKEIRPNRGYGNSWSHEPLLQQEAEEVEDDGFDSGDIIDTGSEDDEVCHSPVKRYQEILMERAQNGLICREIPVKETHKVVRTEDEDGNKMVNEYVREHKIGAGSYGKVVLYRSCTDGKHYAIKAFHKSHLSKMRVAPSETAMGDVLREEFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62212" e_stop="62340"/>
            <exon e_start="63783" e_stop="63878"/>
            <exon e_start="64201" e_stop="64267"/>
            <exon e_start="64404" e_stop="64519"/>
            <exon e_start="64604" e_stop="64682"/>
            <exon e_start="64990" e_stop="65526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62212" e_stop="62340" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62341" i_stop="63782" i_length="1442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63783" e_stop="63878" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63879" i_stop="64200" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64201" e_stop="64267" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64268" i_stop="64403" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64404" e_stop="64519" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64520" i_stop="64603" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64604" e_stop="64682" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64683" i_stop="64989" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="0.935">
            <gDNA_exon_boundary e_start="64990" e_stop="65526" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62212" stop="62340"/>
              <exon start="63783" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63807" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63821" stop="63878"/>
              <exon start="64201" stop="64267"/>
              <exon start="64404" stop="64519"/>
              <exon start="64604" stop="64682"/>
              <exon start="64990" stop="65526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547619" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTT</gDNA_template>
            <first_frame> K  V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *  S  </first_frame>
            <second_frame>  K  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  V </second_frame>
            <third_frame>   S  S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62212" stop="62340"/>
                    <exon start="63783" stop="63878"/>
                    <exon start="64201" stop="64267"/>
                    <exon start="64404" stop="64519"/>
                    <exon start="64604" stop="64682"/>
                    <exon start="64990" stop="65141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="58569" e_stop="59093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="58569" e_stop="59093" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58569" stop="59093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</gDNA_template>
            <first_frame> N  L  G  K  R  L  C  F  *  L  I  L  I  V  V  M  N  N  Y  *  E  K  D  *  S  F  *  C  F  *  I  S  F  K  E  S  W  K  K  I  V  F  L  *  A  I  V  R  R  M  I  E  P  F  D  G  F  D  F  L  *  R  I  L  I  E  D  C  F  L  L  G  L  I  V  L  *  T  I  V  R  R  M  I  E  P  L  N  G  F  D  C  P  Q  R  I  L  E  R  D  C  I  F  I  G  F  D  C  F  Y  G  N  L  Y  G  E  *  L  N  P  L  M  V  L  I  Y  Y  K  V  S  W  E  I  Y  G  F  Y  W  F  *  S  F  F  *  K  H  C  D  P  N  D  R  T  F  *  C  F  *  F  S  T  K  N  F  G  K  I  L  Y  F  C  R  F  *  L </first_frame>
            <second_frame>  I  L  E  K  D  C  V  F  N  *  F  *  L  L  L  *  T  I  I  R  R  K  I  E  A  F  D  V  F  R  F  L  S  K  N  L  G  K  R  L  Y  F  Y  E  Q  L  L  G  E  *  L  N  H  L  M  V  L  I  S  Y  K  E  Y  *  *  K  I  V  F  Y  W  V  *  L  F  Y  E  Q  L  L  G  G  *  L  N  L  *  M  V  L  I  V  P  K  E  S  W  K  E  I  V  F  L  L  V  L  I  V  F  M  E  I  C  M  E  N  D  *  T  L  *  W  F  *  F  T  I  K  C  L  G  K  Y  M  V  F  I  G  F  D  H  F  S  E  N  I  V  I  Q  M  I  E  P  F  D  V  F  N  F  L  Q  R  I  L  G  K  Y  C  I  F  V  G  F  D   </second_frame>
            <third_frame>   S  W  K  K  I  V  F  L  I  D  F  D  C  C  Y  E  Q  L  L  G  E  R  L  K  L  L  M  F  L  D  F  F  Q  R  I  L  E  K  D  C  I  F  M  S  N  C  *  E  N  D  *  T  I  *  W  F  *  F  P  I  K  N  I  D  R  R  L  F  F  I  G  F  D  C  F  M  N  N  C  *  E  D  D  *  T  F  E  W  F  *  L  S  P  K  N  L  G  K  R  L  Y  F  Y  W  F  *  L  F  L  W  K  F  V  W  R  M  T  E  P  F  D  G  F  D  L  L  *  S  V  L  G  N  I  W  F  L  L  V  L  I  I  F  L  K  T  L  *  S  K  *  *  N  L  L  M  F  L  I  F  Y  K  E  F  W  E  N  I  V  F  L  *  V  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68758" PGL_stop="70621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68758" e_stop="68945"/>
            <exon e_start="69784" e_stop="70621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68758" e_stop="68945" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68946" i_stop="69783" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69784" e_stop="70621" e_length="838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68758" stop="68945"/>
              <exon start="69784" stop="70135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70043" stop="70611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70067" stop="70621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG : ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACAC</gDNA_template>
            <first_frame> I  L  S  L  K  I  P  V  R  W  S  P  *  V  R  F  P  A  N  I  P  A  L  *  L  P  V  I  G  S  K  L  T  S  L  Q  Q  W  N  N  H  H  T  G  F  Y  L  R  R  R  *  F  A  T  G  R  N  K  Q  L  D  F  R :   *  G  V  I  S  G  W  *  *  I  T  G  F  W  P  *  V  I  *  F  C  Y  M  E  I  Q  F  D  S  K  Q  L  G  K  M  *  R  D  E  S  S  S  L  S  V  W  I  G  *  S  W  F  N  F  Y  C  C  R  G  *  *  Q  E  W  E  C  T  K  I  C  R  A  L  *  F  F  D  W  Y  M  G  N  T  A  Q  H  A  F  S  P  Q  I  M  L  W  L  F  H  G  W  K  I  L  C  D  R  W  D  D  *  S  Y  R  F  F  D  L  W  G  R  V  *  S  T  N  K  E  V  E  E  N  *  G  H  V  S  K  R  Q  *  S  C  S  G  T  S  S  C  C  S  C  *  *  P  T  I  C  S  *  I  S  N  Q  H  G  *  E  V  *  Q  E  K  *  L  M  G  G  I  G  K  T  S  R  E  G  *  F  F  E  W  L  G  S  C  F  Q  S  M  W  *  R  T  S  C  G  R  W  Q  Q  G  S  R  R  *  S  Y  Y  I  E  F  L  G  T  K  I  R  V  *  R  R  H  L  G  L  E  G  H  R  P  K  R  A  F  W  C  L  C  I  Q  L  C  R  D  G  L  L  R  L  I  Q  P  N  G  E  R  S  H  L  F  Q  L  L  F  L  A  *  F  Q  H </first_frame>
            <second_frame>  F  S  L  *  K  F  R  *  D  G  R  R  K  F  V  F  R  R  I  S  R  R  Y  S  Y  L  *  S  D  R  N  L  L  H  S  S  N  G  I  I  T  T  L  V  F  I  S  G  D  A  N  L  R  L  A  E  I  S  S  W  I  S   : D  K  E  S  L  A  V  G  S  E  L  L  V  F  G  R  E  L  F  D  F  A  I  W  K  Y  S  L  I  Q  N  N  W  E  K  C  E  G  M  N  H  R  R  C  L  F  G  S  G  S  L  G  S  I  S  I  V  A  G  G  S  D  K  N  G  N  V  L  K  S  A  E  L  Y  D  S  L  T  G  T  W  E  I  L  P  N  M  H  S  P  R  R  L  C  S  G  F  F  M  D  G  K  F  Y  V  I  G  G  M  T  N  P  T  D  S  L  T  C  G  E  E  F  D  L  Q  T  R  K  W  R  K  I  E  G  M  Y  P  N  V  N  R  A  A  Q  A  P  P  L  V  A  V  V  N  N  Q  L  Y  A  V  E  Y  L  T  N  M  V  K  K  Y  D  K  K  N  N  S  W  E  V  L  G  R  L  P  V  R  A  D  S  S  N  G  W  G  L  A  F  K  A  C  G  E  E  L  L  V  V  G  G  N  R  G  P  E  G  E  A  I  I  L  S  S  W  A  P  K  S  G  C  K  D  G  T  L  D  W  K  V  I  G  L  K  E  H  S  G  V  F  V  Y  N  C  A  V  M  G  C  *  D  S  S  N  Q  M  E  K  E  V  I  C  F  N  C  C  F  *  R  N  S  N   </second_frame>
            <third_frame>   S  L  S  K  N  S  G  E  M  V  A  V  S  S  F  S  G  E  Y  P  G  V  I  V  T  C  D  R  I  E  T  Y  F  T  P  A  M  E  *  S  P  H  W  F  L  S  P  A  T  L  I  C  D  W  Q  K  *  A  A  G  F  P  :  I  R  S  H  *  R  L  V  V  N  Y  W  F  L  A  V  S  Y  L  I  L  L  Y  G  N  T  V  *  F  K  T  T  G  K  N  V  K  G  *  I  I  V  V  V  C  L  D  R  V  V  L  V  Q  F  L  L  L  Q  G  V  V  T  R  M  G  M  Y  *  N  L  P  S  F  M  I  L  *  L  V  H  G  K  Y  C  P  T  C  I  L  P  A  D  Y  A  L  A  F  S  W  M  E  N  F  M  *  *  V  G  *  L  I  L  P  I  L  *  L  V  G  K  S  L  I  Y  K  Q  G  S  G  G  K  L  R  A  C  I  Q  T  S  I  E  L  L  R  H  L  L  L  L  Q  L  L  I  T  N  Y  M  Q  L  N  I  *  P  T  W  L  R  S  M  T  R  K  I  T  H  G  R  Y  W  E  D  F  P  *  G  L  I  L  R  M  V  G  V  L  L  S  K  H  V  V  K  N  F  L  W  *  V  A  T  G  V  Q  K  V  K  L  L  Y  *  V  L  G  H  Q  N  Q  G  V  K  T  A  P  W  I  G  R  S  S  A  *  K  S  I  L  V  S  L  Y  T  I  V  P  *  W  V  V  E  T  H  P  T  K  W  R  K  K  S  F  V  S  T  V  V  S  S  V  I  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68840" stop="68945"/>
                    <exon start="69784" stop="70553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDRNLLHSSNGIITTLVFISGDANLRLAEISSWISDKESLAVGSELLVFGRELFDFAIWKYSLIQNNWEKCEGMNHRRCLFGSGSLGSISIVAGGSDKNGNVLKSAELYDSLTGTWEILPNMHSPRRLCSGFFMDGKFYVIGGMTNPTDSLTCGEEFDLQTRKWRKIEGMYPNVNRAAQAPPLVAVVNNQLYAVEYLTNMVKKYDKKNNSWEVLGRLPVRADSSNGWGLAFKACGEELLVVGGNRGPEGEAIILSSWAPKSGCKDGTLDWKVIGLKEHSGVFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70743" PGL_stop="70179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70743" e_stop="70179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="70743" e_stop="70179" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70743" stop="70179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGCAGAATGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACATTTTAGCTAAGAACAACTGCTTATCTCAAACACCTGAAAGATGTTAAATAAAAAGAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACAAATGACTTCTTTCTCCATTTGGTTGGATGAGTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTGTTGCCACCTACCACAAGAAGTTCTTCACCACATGCTTTGAAAGCAAGACCCCAACCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTATTTTTCTTGTCATACTTCTTAACCATGTTGGTTAGATATTCAACTGCATATAGTTGGTTATTAACAACTGCAACAAGAGGAGGTGCCTGAGCAGCTCTATTGACGTTTGGATACATGCCCTC</gDNA_template>
            <first_frame> S  A  E  *  V  S  E  N  N  H  P  V  K  R  T  F  *  L  R  T  T  A  Y  L  K  H  L  K  D  V  K  *  K  E  M  L  I  N  Q  T  M  C  W  N  Y  A  R  N  N  S  *  N  K  *  L  L  S  P  F  G  W  M  S  L  N  N  P  S  R  H  N  C  I  Q  R  H  Q  N  A  L  L  G  R  *  P  S  N  P  R  C  R  L  Y  T  L  I  L  V  P  K  N  S  I  *  *  L  H  L  L  D  P  C  C  H  L  P  Q  E  V  L  H  H  M  L  *  K  Q  D  P  N  H  S  K  N  Q  P  S  R  E  V  F  P  I  P  P  M  S  Y  F  S  C  H  T  S  *  P  C  W  L  D  I  Q  L  H  I  V  G  Y  *  Q  L  Q  Q  E  E  V  P  E  Q  L  Y  *  R  L  D  T  C  P  </first_frame>
            <second_frame>  L  Q  N  E  *  V  K  I  T  I  Q  L  R  G  H  F  S  *  E  Q  L  L  I  S  N  T  *  K  M  L  N  K  K  K  C  *  *  I  K  Q  C  V  G  I  T  L  E  T  T  V  E  T  N  D  F  F  L  H  L  V  G  *  V  S  T  T  H  H  G  T  I  V  Y  K  D  T  R  M  L  F  *  A  D  D  L  P  I  Q  G  A  V  F  T  P  *  F  W  C  P  R  T  Q  Y  N  S  F  T  F  W  T  P  V  A  T  Y  H  K  K  F  F  T  T  C  F  E  S  K  T  P  T  I  R  R  I  S  P  H  G  K  S  S  Q  Y  L  P  *  V  I  F  L  V  I  L  L  N  H  V  G  *  I  F  N  C  I  *  L  V  I  N  N  C  N  K  R  R  C  L  S  S  S  I  D  V  W  I  H  A  L </second_frame>
            <third_frame>   C  R  M  S  E  *  K  *  P  S  S  *  E  D  I  L  A  K  N  N  C  L  S  Q  T  P  E  R  C  *  I  K  R  N  A  N  K  S  N  N  V  L  E  L  R  *  K  Q  Q  L  K  Q  M  T  S  F  S  I  W  L  D  E  S  Q  Q  P  I  T  A  Q  L  Y  T  K  T  P  E  C  S  F  R  P  M  T  F  Q  S  K  V  P  S  L  H  P  D  F  G  A  Q  E  L  N  I  I  A  S  P  S  G  P  L  L  P  P  T  T  R  S  S  S  P  H  A  L  K  A  R  P  Q  P  F  E  E  S  A  L  T  G  S  L  P  N  T  S  H  E  L  F  F  L  S  Y  F  L  T  M  L  V  R  Y  S  T  A  Y  S  W  L  L  T  T  A  T  R  G  G  A  *  A  A  L  L  T  F  G  Y  M  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70603" stop="70211"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQLKQMTSFSIWLDESQQPITAQLYTKTPECSFRPMTFQSKVPSLHPDFGAQELNIIASPSGPLLPPTTRSSSPHALKARPQPFEESALTGSLPNTSHELFFLSYFLTMLVRYSTAYSWLLTTATRGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="74826" PGL_stop="74061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74826" e_stop="74061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="74826" e_stop="74061" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74826" stop="74329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74783" stop="74083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74783" stop="74181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74746" stop="74125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74694" stop="74061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74694" stop="74061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74694" stop="74075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74634" stop="74085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272203" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</gDNA_template>
            <first_frame> I  S  T  L  V  Q  G  N  S  *  N  Q  L  L  Q  E  H  S  S  L  I  I  Q  S  L  T  T  C  S  M  F  S  S  L  I  I  T  P  P  H  C  P  Y  M  *  R  I  L  V  L  T  L  C  T  I  Q  D  L  L  S  P  E  R  L  L  C  H  L  L  T  L  T  N  I  W  V  H  H  *  I  M  K  D  S  T  S  F  I  G  L  V  K  Q  L  K  T  E  T  M  S  S  S  *  *  M  L  E  H  Q  S  *  T  F  *  Q  N  Y  S  K  L  D  Q  Y  A  T  S  M  S  C  S  F  A  A  P  L  Q  I  A  E  M  L  F  V  E  T  A  *  A  F  S  K  L  *  G  E  V  V  C  L  L  I  N  G  G  E  T  R  V  L  S  R  V  L  S  A  F  Y  V  V  L  C  S  T  F  A  L  V  S  V  G  N  K  L  R  G  G  C  R  L  K  V  D  T  V  I  L  L  S  P  F  W  N  C  T  *  C  L  V  Y  V  S  M  C  V  C  E  L  L  V  S  K  F  L  F  *  V  Y  I  K  I  C  V  M  C  F  K  N  Y  A  L  L  *  *  L  T  </first_frame>
            <second_frame>  Y  Q  R  W  C  R  G  I  R  R  I  N  S  C  K  N  I  Q  A  S  L  S  N  P  S  P  L  V  Q  C  F  R  H  *  S  *  H  L  H  T  V  L  I  C  E  E  S  W  Y  *  L  C  V  P  S  R  T  C  C  R  R  R  D  Y  F  V  I  C  *  H  *  R  I  F  G  C  T  T  R  S  *  R  I  R  L  H  S  L  V  *  *  N  S  *  R  R  R  L  C  H  P  H  D  E  C  *  S  T  R  A  K  H  S  S  R  T  I  P  N  W  I  N  M  P  R  R  *  A  V  P  S  L  L  R  C  R  L  Q  K  C  S  L  W  R  L  H  E  P  F  Q  N  S  K  E  K  W  C  V  C  S  S  M  V  G  R  L  E  F  C  Q  E  F  *  V  H  F  M  L  S  C  V  Q  L  L  L  *  C  L  L  G  I  N  *  G  E  V  V  G  *  K  L  I  L  *  S  Y  F  L  P  S  G  T  A  L  D  V  L  C  M  C  P  C  V  Y  V  S  C  L  S  L  S  F  F  F  E  F  I  *  K  Y  V  L  C  V  L  R  T  M  L  Y  C  D  N  *  H </second_frame>
            <third_frame>   I  N  V  G  A  G  E  F  V  E  S  T  L  A  R  T  F  K  P  H  Y  P  I  P  H  H  L  F  N  V  F  V  I  D  H  N  T  S  T  L  S  L  Y  V  K  N  P  G  I  N  F  V  Y  H  P  G  L  A  V  A  G  E  T  T  L  S  S  V  D  T  D  E  Y  L  G  A  P  L  D  H  E  G  F  D  F  I  H  W  F  S  E  T  V  K  D  G  D  Y  V  I  L  M  M  N  A  R  A  P  E  L  N  I  L  A  E  L  F  Q  T  G  S  I  C  H  V  D  E  L  F  L  R  C  S  A  A  D  C  R  N  A  L  C  G  D  C  M  S  L  F  K  T  L  R  R  S  G  V  F  A  H  Q  W  W  G  D  *  S  F  V  K  S  F  K  C  I  L  C  C  L  V  F  N  F  C  F  S  V  C  W  E  *  I  E  G  R  L  *  V  E  S  *  Y  C  N  L  T  F  S  L  L  E  L  H  L  M  S  C  V  C  V  H  V  C  M  *  V  A  C  L  *  V  S  F  L  S  L  Y  K  N  M  C  Y  V  F  *  E  L  C  F  I  V  I  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74824" stop="74327"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INVGAGEFVESTLARTFKPHYPIPHHLFNVFVIDHNTSTLSLYVKNPGINFVYHPGLAVAGETTLSSVDTDEYLGAPLDHEGFDFIHWFSETVKDGDYVILMMNARAPELNILAELFQTGSICHVDELFLRCSAADCRNALCGDCMSLFKTLRRSGVFAHQWWGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74083" PGL_stop="74652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74083" e_stop="74652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="74083" e_stop="74652" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74083" stop="74652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGTTCTTAAAACACATAACACATATTTTTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAG</gDNA_template>
            <first_frame> I  V  L  K  T  H  N  T  Y  F  Y  I  N  S  K  K  K  L  R  D  K  Q  L  T  Y  T  H  G  H  I  H  K  T  S  S  A  V  P  E  G  R  K  *  D  Y  S  I  N  F  Q  P  T  T  S  P  Q  F  I  P  N  R  H  *  S  K  S  *  T  Q  D  N  I  K  C  T  *  N  S  *  Q  N  S  S  L  P  T  I  D  E  Q  T  H  H  F  S  L  E  F  *  K  G  S  C  S  L  H  K  E  H  F  C  N  L  Q  R  S  S  E  G  T  A  H  R  R  G  I  L  I  Q  F  G  I  V  L  L  E  C  L  A  L  V  L  *  H  S  S  *  G  *  H  S  L  R  L  *  L  F  H  *  T  N  E  *  S  R  I  L  H  D  L  V  V  H  P  N  I  R  Q  C  Q  Q  M  T  K  *  S  L  R  R  Q </first_frame>
            <second_frame>  *  F  L  K  H  I  T  H  I  F  I  *  T  Q  K  R  N  L  E  T  S  N  S  H  T  H  M  D  T  Y  T  R  H  Q  V  Q  F  Q  K  G  E  S  K  I  T  V  S  T  F  N  L  Q  P  P  L  N  L  F  P  T  D  T  K  A  K  V  E  H  K  T  T  *  N  A  L  K  T  L  D  K  T  L  V  S  P  P  L  M  S  K  H  T  T  S  P  *  S  F  E  K  A  H  A  V  S  T  K  S  I  S  A  I  C  S  G  A  A  K  E  Q  L  I  D  V  A  Y  *  S  S  L  E  *  F  C  *  N  V  *  L  W  C  S  S  I  H  H  E  D  D  I  V  S  V  F  N  C  F  T  K  P  M  N  E  V  E  S  F  M  I  *  W  C  T  Q  I  F  V  S  V  N  R  *  Q  S  S  L  S  G  D   </second_frame>
            <third_frame>   S  S  *  N  T  *  H  I  F  L  Y  K  L  K  K  E  T  *  R  Q  A  T  H  I  H  T  W  T  H  T  Q  D  I  K  C  S  S  R  R  E  K  V  R  L  Q  Y  Q  L  S  T  Y  N  L  P  S  I  Y  S  Q  Q  T  L  K  Q  K  L  N  T  R  Q  H  K  M  H  L  K  L  L  T  K  L  *  S  P  H  H  *  *  A  N  T  P  L  L  L  R  V  L  K  R  L  M  Q  S  P  Q  R  A  F  L  Q  S  A  A  E  Q  R  R  N  S  S  S  T  W  H  I  D  P  V  W  N  S  S  A  R  M  F  S  S  G  A  L  A  F  I  M  R  M  T  *  S  P  S  L  T  V  S  L  N  Q  *  M  K  S  N  P  S  *  S  S  G  A  P  K  Y  S  S  V  S  T  D  D  K  V  V  S  P  A  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="75540" PGL_stop="74979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75540" e_stop="74979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75540" e_stop="74979" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75540" stop="75255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75538" stop="75073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75534" stop="75229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75369" stop="74979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTC</gDNA_template>
            <first_frame> G  S  L  N  L  F  L  D  W  G  F  R  C  L  E  L  L  *  *  S  G  T  T  K  N  *  P  R  M  C  L  R  S  *  W  K  R  I  S  W  I  *  M  L  M  H  C  V  L  G  R  N  R  R  L  Q  L  W  C  C  E  N  W  D  S  *  V  L  L  V  L  M  H  T  R  I  S  L  L  Y  G  E  D  L  C  T  S  S  I  M  R  T  I  L  S  I  L  C  S  R  G  I  W  I  R  S  L  Y  Q  L  L  W  C  L  R  L  S  V  S  Y  V  Q  G  A  P  V  L  C  S  W  V  L  V  V  S  T  R  V  T  W  *  K  A  T  *  *  G  L  P  P  Q  F  R  R  S  *  R  V  L  M  L  C  T  Y  V  G  L  A  R  I  L  *  *  C  S  R  K  D  Q  R  L  F  N  L  S  C  T  </first_frame>
            <second_frame>  V  R  *  T  C  F  W  I  G  D  F  A  V  W  S  F  F  D  E  A  G  R  R  K  I  D  Q  G  C  V  *  G  A  N  G  K  G  F  L  G  F  E  C  *  C  I  V  C  W  E  E  I  V  V  C  S  F  G  A  A  R  I  G  T  L  E  C  C  W  C  *  C  T  P  V  F  L  S  C  M  E  K  I  Y  V  R  A  R  S  *  E  Q  F  F  R  F  C  V  L  E  G  S  G  *  G  H  C  T  S  S  Y  G  A  *  D  *  A  C  L  T  S  R  G  H  R  C  Y  A  R  G  F  *  *  F  L  R  G  *  L  G  K  R  Q  L  D  K  V  C  H  P  S  F  V  V  L  E  E  F  *  C  C  A  R  M  W  G  W  H  V  Y  S  S  D  V  Q  E  K  I  R  D  C  S  I  S  R  A  L </second_frame>
            <third_frame>   F  V  K  P  V  S  G  L  G  I  S  L  F  G  A  S  L  M  K  R  D  D  E  K  L  T  K  D  V  F  K  E  L  M  E  K  D  F  L  D  L  N  A  N  A  L  C  V  G  K  K  S  S  F  A  A  L  V  L  R  E  L  G  L  L  S  A  V  G  V  D  A  H  P  Y  F  S  L  V  W  R  R  F  M  Y  E  L  D  H  E  N  N  S  F  D  F  V  F  S  R  D  L  D  K  V  T  V  P  A  L  M  V  L  E  I  E  R  V  L  R  P  G  G  T  G  V  M  L  V  G  S  S  S  F  Y  A  G  N  L  V  K  G  N  L  I  R  S  A  T  P  V  S  S  F  L  K  S  S  D  V  V  H  V  C  G  V  G  T  Y  T  L  V  M  F  K  K  R  S  E  I  V  Q  S  L  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75538" stop="74981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVKPVSGLGISLFGASLMKRDDEKLTKDVFKELMEKDFLDLNANALCVGKKSSFAALVLRELGLLSAVGVDAHPYFSLVWRRFMYELDHENNSFDFVFSRDLDKVTVPALMVLEIERVLRPGGTGVMLVGSSSFYAGNLVKGNLIRSATPVSSFLKSSDVVHVCGVGTYTLVMFKKRSEIVQSLVH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="85547" PGL_stop="89290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85547" e_stop="85648"/>
            <exon e_start="85760" e_stop="85894"/>
            <exon e_start="86991" e_stop="87086"/>
            <exon e_start="88900" e_stop="89290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85547" e_stop="85648" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85760" e_stop="85894" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.891">
            <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86991" e_stop="87086" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.752" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87087" i_stop="88899" i_length="1813"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88900" e_stop="89290" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85547" stop="85648"/>
              <exon start="85760" stop="85894"/>
              <exon start="86991" stop="87086"/>
              <exon start="88900" stop="89068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85549" stop="85648"/>
              <exon start="85760" stop="85894"/>
              <exon start="86991" stop="87060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85640" stop="85648"/>
              <exon start="85760" stop="85894"/>
              <exon start="86991" stop="87086"/>
              <exon start="88900" stop="89290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG : GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG : GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG : GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</gDNA_template>
            <first_frame> S  Y  S  E  L  H  A  D  N  A  V  A  E  A  K  I  H  D  F  I  N  G  L  K  F  C  I  S  P  T  A  F  F  Q  :  V  N  T  L  A  A  E  K  L  Y  S  L  A  G  D  W  A  S  L  G  P  D  T  L  L  F  D  V  C  C  G  T  G  T  I  G  L  T  L  A  N  R  V  G  M  :  V  V  G  I  E  M  N  A  S  A  V  S  D  A  Q  R  N  A  E  I  N  G  I  K  N  C  R  F  I  C  G  K  :  A  E  D  V  M  G  S  V  L  K  E  Y  L  A  S  P  A  K  V  D  G  L  L  D  I  E  E  K  K  N  Q  E  N  T  T  S  T  E  K  T  D  S  I  V  N  A  S  K  T  D  G  E  S  S  T  G  S  E  N  G  K  S  M  C  I  D  Q  D  T  T  P  T  E  N  M  Y  S  T  D  R  A  A  E  P  E  E  K  T  G  L  E  C  T  N  G  K  S  L  S  E  S  S  A  D  D  T  T  E  P  A  T  Q  L  K  K  C  S  S  D  N  L  T  T  P  V  Q  H  F  K  N  </first_frame>
            <second_frame>  A  I  L  N  C  M  Q  I  M  Q  L  L  K  Q  K  F  T  I  L  L  M  D  L  S  F  V  F  R  R  R  P  S  F  R :   *  T  P  L  L  Q  R  S  Y  T  L  L  Q  G  T  G  P  A  W  V  L  I  P  Y  F  L  T  F  A  V  E  L  E  Q  L  V  L  L  W  Q  I  E  L  V  W :   L  L  A  L  K  *  M  L  L  L  F  L  M  L  K  E  M  L  K  S  M  G  *  R  T  V  D  L  F  V  E  R :   Q  R  M  S  W  D  L  Y  *  K  N  I  L  L  H  L  R  K  *  M  D  F  *  I  *  K  K  R  K  T  K  K  I  L  L  L  Q  R  R  L  I  L  *  L  T  H  R  K  Q  M  G  S  Q  V  L  G  L  K  M  V  K  A  C  A  L  I  K  I  L  H  L  L  R  I  C  I  L  R  I  E  P  L  N  R  R  K  K  Q  A  L  S  V  P  M  V  K  A  C  Q  N  L  Q  Q  M  T  L  Q  N  Q  Q  P  N  L  R  S  V  H  Q  I  I  *  P  L  Q  C  N  I  S  R  M </second_frame>
            <third_frame>   L  F  *  T  A  C  R  *  C  S  C  *  S  K  N  S  R  F  Y  *  W  T  *  V  L  Y  F  A  D  G  L  L  S   : G  E  H  P  C  C  R  E  V  I  L  S  C  R  G  L  G  Q  L  G  S  *  Y  L  T  F  *  R  L  L  W  N  W  N  N  W  S  Y  S  G  K  S  S  W  Y   : G  C  W  H  *  N  E  C  F  C  C  F  *  C  S  K  K  C  *  N  Q  W  D  K  E  L  *  I  Y  L  W  K   : G  R  G  C  H  G  I  C  T  E  R  I  S  C  F  T  C  E  S  R  W  T  S  R  Y  R  R  K  E  K  P  R  K  Y  Y  F  Y  R  E  D  *  F  Y  S  *  R  I  E  N  R  W  G  V  K  Y  W  V  *  K  W  *  K  H  V  H  *  S  R  Y  Y  T  Y  *  E  Y  V  F  Y  G  *  S  R  *  T  G  G  K  N  R  P  *  V  Y  Q  W  *  K  L  V  R  I  F  S  R  *  H  Y  R  T  S  N  P  T  *  E  V  F  I  R  *  F  D  H  S  S  A  T  F  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85547" stop="85648"/>
                    <exon start="85760" stop="85894"/>
                    <exon start="86991" stop="87086"/>
                    <exon start="88900" stop="89289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSELHADNAVAEAKIHDFINGLKFCISPTAFFQVNTLAAEKLYSLAGDWASLGPDTLLFDVCCGTGTIGLTLANRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFICGKAEDVMGSVLKEYLASPAKVDGLLDIEEKKNQENTTSTEKTDSIVNASKTDGESSTGSENGKSMCIDQDTTPTENMYSTDRAAEPEEKTGLECTNGKSLSESSADDTTEPATQLKKCSSDNLTTPVQHFKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="89939" PGL_stop="90683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89939" e_stop="89982"/>
            <exon e_start="90097" e_stop="90683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.273" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89939" e_stop="89982" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.273" acc_prob="0.980">
            <gDNA_intron_boundary i_start="89983" i_stop="90096" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="90097" e_stop="90683" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89939" stop="89982"/>
              <exon start="90097" stop="90683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256140" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT : TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</gDNA_template>
            <first_frame> V  I  K  L  L  R  T  N  S  R  L  R  R  L  V :   Y  I  S  C  N  P  E  S  L  V  A  N  A  I  E  L  C  T  P  S  P  D  E  S  E  K  G  D  N  R  N  N  R  L  W  R  K  M  S  S  A  T  L  A  R  H  R  T  K  S  M  P  N  S  E  P  F  K  P  V  K  A  M  A  V  D  L  F  P  H  S  P  H  C  E  L  V  M  L  L  E  R  *  I  Y  L  F  P  *  V  I  I  L  S  S  H  I  Y  V  R  K  *  K  C  S  F  I  F  V  L  S  M  W  K  T  R  D  V  L  S  T  N  S  Y  *  I  S  V  T  D  G  S  F  E  A  I  F  Y  S  W  K  I  S  I  I  L  F  C  N  F  F  L  I  L  L  P  T  S  S  S  L  I  P  C  S  K  R  I  P  L  I  L  M  T  D  Y  V  Y  D  L  S  S  N  L  R  C  C  N  N  F  K  *  K  V  F  </first_frame>
            <second_frame>  L  S  N  F  *  G  L  T  H  V  *  G  G  L   : F  T  F  P  V  I  L  K  A  W  L  Q  T  L  L  S  S  A  H  L  L  Q  T  N  R  K  R  G  I  I  G  T  T  D  Y  G  G  R  *  A  A  L  L  L  H  D  I  G  P  N  L  C  P  I  Q  S  L  L  N  L  S  K  P  W  L  L  I  F  F  H  I  L  L  I  V  N  W  *  C  F  W  R  G  K  F  I  C  F  L  K  *  *  S  *  V  A  I  F  M  *  G  N  R  N  V  P  L  Y  L  F  S  Q  C  G  K  Q  G  M  C  F  R  Q  T  V  T  R  Y  L  L  L  M  A  V  L  R  Q  S  F  T  R  G  R  F  P  *  Y  C  F  V  T  F  S  L  F  Y  Y  Q  L  P  V  P  *  F  P  V  R  K  E  Y  L  *  Y  *  *  Q  I  M  F  M  T  S  H  L  I  *  D  A  V  T  I  S  S  E  K  Y  S </second_frame>
            <third_frame>   Y  Q  T  F  K  D  *  L  T  S  K  E  A  C  :  L  H  F  L  *  S  *  K  L  G  C  K  R  Y  *  A  L  H  T  F  S  R  R  I  G  K  G  G  *  *  E  Q  Q  I  M  E  E  D  E  Q  R  Y  S  C  T  T  *  D  Q  I  Y  A  Q  F  R  A  F  *  T  C  Q  S  H  G  C  *  S  F  S  T  F  S  S  L  *  T  G  D  A  F  G  E  V  N  L  S  V  S  L  S  D  N  L  E  *  P  Y  L  C  E  E  I  E  M  F  L  Y  I  C  S  L  N  V  E  N  K  G  C  A  F  D  K  Q  L  L  D  I  C  Y  *  W  Q  F  *  G  N  L  L  L  V  E  D  F  H  N  I  V  L  *  L  F  P  Y  F  I  T  N  F  Q  F  P  D  S  L  F  E  K  N  T  S  N  I  N  D  R  L  C  L  *  P  L  I  *  F  K  M  L  *  Q  F  Q  V  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89939" stop="89982"/>
                    <exon start="90097" stop="90346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKLLRTNSRLRRLVYISCNPESLVANAIELCTPSPDESEKGDNRNNRLWRKMSSATLARHRTKSMPNSEPFKPVKAMAVDLFPHSPHCELVMLLER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90473" stop="90673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISVTDGSFEAIFYSWKISIILFCNFFLILLPTSSSLIPCSKRIPLILMTDYVYDLSSNLRCCNNFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97843" PGL_stop="99466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97843" e_stop="98116"/>
            <exon e_start="99014" e_stop="99466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="97843" e_stop="98116" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99014" e_stop="99466" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97843" stop="98116"/>
              <exon start="99014" stop="99298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97862" stop="98116"/>
              <exon start="99014" stop="99466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98021" stop="98116"/>
              <exon start="99014" stop="99456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG : ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</gDNA_template>
            <first_frame> F  Y  Y  T  K  *  Q  T  F  W  F  S  I  F  F  F  K  K  K  L  P  L  H  L  F  F  L  K  K  I  F  C  Y  F  H  S  F  Q  D  F  F  K  F  *  V  N  K  V  Y  Y  *  *  I  V  E  Y  L  D  H  E  *  R  T  *  G  E  N  H  G  *  G  C  *  *  *  *  K  N  W  C  L  *  K  *  F  C  H  F  N  T  *   : D  R  E  V  I  H  D  Y  *  R  N  N  T  C  *  T  L  E  E  T  K  P  I  L  R  H  T  F  K  N  V  R  R  V  S  S  R  V  S  S  D  *  K  T  I  H  A  Y  T  E  E  G  E  F  P  F  D  T  Q  Y  L  *  F  K  N  N  Y  F  I  T  R  S  L  P  V  S  W  K  I  N  H  *  K  S  F  P  *  T  E  L  E  I  T  Y  E  F  G  Y  R  E  G  N  C  P  G  Y  R  S  S  C  C  S  C  A  T  T  R  E  G  I  H  F  K  V  M  V  T  Y  *  N  V  H  A  S  H  Q  E  D  L  V  F  A  R  Y  T  N  F  T  F  K  S  </first_frame>
            <second_frame>  F  I  I  Q  S  N  K  H  S  G  S  L  F  F  F  L  K  K  N  S  H  C  T  F  F  F  *  K  K  S  F  V  I  F  T  L  F  K  I  F  S  N  F  K  *  T  K  C  I  I  S  R  L  W  N  I  W  I  M  S  E  E  H  K  E  K  I  M  A  E  V  V  D  N  D  E  K  I  G  V  C  E  N  D  F  V  I  S  T  P  K  :  I  E  R  S  S  T  I  T  E  E  T  T  H  A  K  H  W  R  K  P  N  L  S  L  D  I  P  S  R  T  L  D  A  S  P  Q  E  L  V  Q  I  K  R  P  F  T  P  T  P  K  R  V  N  F  L  L  T  P  S  T  C  D  S  R  I  T  T  S  S  P  G  P  S  P  C  R  G  K  S  T  I  R  N  L  F  P  K  L  S  L  K  S  R  M  N  S  D  T  E  K  V  T  V  P  D  T  G  P  A  A  A  V  V  P  Q  Q  E  K  V  S  I  S  R  S  W  S  L  T  K  M  F  T  P  R  I  K  R  T  S  S  L  P  V  T  P  I  S  H  S  N  P </second_frame>
            <third_frame>   L  L  Y  K  V  T  N  I  L  V  L  Y  F  F  F  *  K  K  T  P  I  A  P  F  F  F  K  K  N  L  L  L  F  S  L  F  S  R  F  F  Q  I  L  S  K  Q  S  V  L  L  V  D  C  G  I  F  G  S  *  V  K  N  I  R  R  K  S  W  L  R  L  L  I  M  M  K  K  L  V  F  V  K  M  I  L  S  F  Q  H  L  R :   S  R  G  H  P  R  L  L  K  K  Q  H  M  L  N  I  G  G  N  Q  T  Y  P  *  T  Y  L  Q  E  R  *  T  R  L  L  K  S  *  F  R  L  K  D  H  S  R  L  H  R  R  G  *  I  S  F  *  H  P  V  L  V  I  Q  E  *  L  L  H  H  Q  V  P  P  R  V  V  E  N  Q  P  L  E  I  F  S  L  N  *  A  *  N  H  V  *  I  R  I  Q  R  R  *  L  S  R  I  Q  V  Q  L  L  Q  L  C  H  N  K  R  R  Y  P  F  Q  G  H  G  H  L  L  K  C  S  R  L  A  S  R  G  P  R  L  C  P  L  H  Q  F  H  I  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97979" stop="98116"/>
                    <exon start="99014" stop="99466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCIISRLWNIWIMSEEHKEKIMAEVVDNDEKIGVCENDFVISTPKIERSSTITEETTHAKHWRKPNLSLDIPSRTLDASPQELVQIKRPFTPTPKRVNFLLTPSTCDSRITTSSPGPSPCRGKSTIRNLFPKLSLKSRMNSDTEKVTVPDTGPAAAVVPQQEKVSISRSWSLTKMFTPRIKRTSSLPVTPISHSNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101810" PGL_stop="102703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101810" e_stop="102230"/>
            <exon e_start="102685" e_stop="102703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101810" e_stop="102230" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102231" i_stop="102684" i_length="454"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="102685" e_stop="102703" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101810" stop="102230"/>
              <exon start="102685" stop="102703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219059" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA : GTAAAAAAAGAAAAACAAA</gDNA_template>
            <first_frame> R  L  V  *  V  L  K  I  I  N  T  I  *  K  I  L  R  R  L  V  G  A  R  L  C  L  M  L  L  L  Q  P  K  K  E  L  S  D  L  F  I  Q  S  C  G  D  *  C  L  V  Q  V  R  N  L  L  C  S  T  L  S  C  A  D  S  S  L  S  M  P  H  T  R  V  G  F  S  K  N  T  L  F  F  G  V  S  D  A  H  Q  *  T  F  L  K  S  P  T  N  I  G  S  T  I  R  K  T  E  I  V  A  V  V  V  C  I  A  E  R  I  C  K  K  *  N  A  Y  I  S  R  R  E  Y  T  K  V  F  Y  E  K   : S  K  K  R  K  T   </first_frame>
            <second_frame>  V  S  Y  R  S  S  K  S  S  T  R  Y  R  K  S  *  D  V  *  L  E  L  D  C  V  L  C  Y  C  Y  S  Q  K  K  S  *  V  I  C  S  Y  R  V  V  E  I  D  V  *  Y  K  L  E  T  Y  C  V  L  L  *  V  V  R  T  L  H  F  P  C  H  T  P  V  L  D  S  P  K  I  H  Y  F  L  E  Y  L  T  R  I  N  R  H  F  *  R  V  R  P  T  *  V  L  L  Y  E  K  Q  K  *  L  L  L  L  F  V  L  L  K  E  Y  V  K  S  E  M  H  I  *  V  E  E  S  I  Q  R  C  F  M  K  K  :  V  K  K  E  K  Q  </second_frame>
            <third_frame>   S  R  I  G  P  Q  N  H  Q  H  D  I  E  N  P  E  T  F  S  W  S  *  I  V  S  Y  V  T  V  T  A  K  K  R  V  E  *  F  V  H  T  E  L  W  R  L  M  F  S  T  S  *  K  L  I  V  F  Y  S  K  L  C  G  L  F  T  F  H  A  T  H  P  C  W  I  L  Q  K  Y  T  I  F  W  S  I  *  R  A  S  I  D  I  F  E  E  S  D  Q  H  R  F  Y  Y  T  K  N  R  N  S  C  C  C  C  L  Y  C  *  K  N  M  *  K  V  K  C  I  Y  K  *  K  R  V  Y  K  G  V  L  *  K  K :   *  K  K  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="102233" PGL_stop="101895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102233" e_stop="101895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="102233" e_stop="101895" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102233" stop="101895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTTTTTCATAAAACACCTTTGTATACTCTCTTCTACTTATATATGCATTTCACTTTTTACATATTCTTTCAGCAATACAAACAACAACAGCAACTATTTCTGTTTTTCGTATAGTAGAACCTATGTTGGTCGGACTCTTCAAAAATGTCTATTGATGCGCGTCAGATACTCCAAAAAATAGTGTATTTTTGGAGAATCCAACACGGGTGTGTGGCATGGAAAGTGAAGAGTCCGCACAACTTAGAGTAGAACACAATAAGTTTCTAACTTGTACTAAACATCAATCTCCACAACTCTGTATGAACAAATCACTCAACTCTTTTTTTGGCTGTAACA</gDNA_template>
            <first_frame> *  F  F  H  K  T  P  L  Y  T  L  F  Y  L  Y  M  H  F  T  F  Y  I  F  F  Q  Q  Y  K  Q  Q  Q  Q  L  F  L  F  F  V  *  *  N  L  C  W  S  D  S  S  K  M  S  I  D  A  R  Q  I  L  Q  K  I  V  Y  F  W  R  I  Q  H  G  C  V  A  W  K  V  K  S  P  H  N  L  E  *  N  T  I  S  F  *  L  V  L  N  I  N  L  H  N  S  V  *  T  N  H  S  T  L  F  L  A  V  T </first_frame>
            <second_frame>  N  F  F  I  K  H  L  C  I  L  S  S  T  Y  I  C  I  S  L  F  T  Y  S  F  S  N  T  N  N  N  S  N  Y  F  C  F  S  Y  S  R  T  Y  V  G  R  T  L  Q  K  C  L  L  M  R  V  R  Y  S  K  K  *  C  I  F  G  E  S  N  T  G  V  W  H  G  K  *  R  V  R  T  T  *  S  R  T  Q  *  V  S  N  L  Y  *  T  S  I  S  T  T  L  Y  E  Q  I  T  Q  L  F  F  W  L  *   </second_frame>
            <third_frame>   I  F  S  *  N  T  F  V  Y  S  L  L  L  I  Y  A  F  H  F  L  H  I  L  S  A  I  Q  T  T  T  A  T  I  S  V  F  R  I  V  E  P  M  L  V  G  L  F  K  N  V  Y  *  C  A  S  D  T  P  K  N  S  V  F  L  E  N  P  T  R  V  C  G  M  E  S  E  E  S  A  Q  L  R  V  E  H  N  K  F  L  T  C  T  K  H  Q  S  P  Q  L  C  M  N  K  S  L  N  S  F  F  G  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="103224" PGL_stop="107833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103224" e_stop="103313"/>
            <exon e_start="103926" e_stop="104163"/>
            <exon e_start="106077" e_stop="106142"/>
            <exon e_start="106384" e_stop="106675"/>
            <exon e_start="107373" e_stop="107833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103224" e_stop="103313" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103926" e_stop="104163" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.720">
            <gDNA_intron_boundary i_start="104164" i_stop="106076" i_length="1913"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106077" e_stop="106142" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106384" e_stop="106675" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="107373" e_stop="107833" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103224" stop="103313"/>
              <exon start="103926" stop="104163"/>
              <exon start="106077" stop="106142"/>
              <exon start="106384" stop="106675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103224" stop="103313"/>
              <exon start="103926" stop="104163"/>
              <exon start="106077" stop="106142"/>
              <exon start="106384" stop="106461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106100" stop="106142"/>
              <exon start="106384" stop="106675"/>
              <exon start="107373" stop="107710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106405" stop="106675"/>
              <exon start="107373" stop="107833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106418" stop="106675"/>
              <exon start="107373" stop="107747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106656" stop="106675"/>
              <exon start="107373" stop="107823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </first_frame>
            <second_frame>  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </second_frame>
            <third_frame>   Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  * :   S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104121" stop="104163"/>
                    <exon start="106077" stop="106142"/>
                    <exon start="106384" stop="106675"/>
                    <exon start="107373" stop="107439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPLTHYMALLVMLDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105990" e_stop="106142"/>
            <exon e_start="106384" e_stop="106675"/>
            <exon e_start="107373" e_stop="107833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105990" e_stop="106142" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106384" e_stop="106675" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106676" i_stop="107372" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="107373" e_stop="107833" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105990" stop="106142"/>
              <exon start="106384" stop="106664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106100" stop="106142"/>
              <exon start="106384" stop="106675"/>
              <exon start="107373" stop="107710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106405" stop="106675"/>
              <exon start="107373" stop="107833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106418" stop="106675"/>
              <exon start="107373" stop="107747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106656" stop="106675"/>
              <exon start="107373" stop="107823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> F  M  R  S  K  D  V  S  I  Q  V  L  W  L  F  V  L  A  M  F  M  T  *  N  I  M  L  *  Q  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </first_frame>
            <second_frame>  L  *  D  Q  R  T  *  A  Y  K  S  S  G  Y  L  C  W  R  C  S  *  H  K  T  L  C  C  D  R  S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </second_frame>
            <third_frame>   Y  E  I  K  G  R  K  H  T  S  P  L  A  I  C  V  G  D  V  H  D  I  K  H  Y  A  V  T  D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105992" stop="106142"/>
                    <exon start="106384" stop="106675"/>
                    <exon start="107373" stop="107439"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEIKGRKHTSPLAICVGDVHDIKHYAVTDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 110 chains have been computed
$ 
$ memory statistics:
$ 590848 bytes spliced alignments in total
$ 66 spliced alignments have been stored
$ 8952 bytes was the average size of a spliced alignment
$ 28904 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1605 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 135 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:50:10
-->
