<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:58:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="C2_At5g60540" ref_strand="+" ref_description="C2_At5g60540">
      <seq>gattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacatagcagttttgaaaagattaggagtgaaaggtgtggaggtgagaaagccagagcagttgctgcatgttagctccctaatcatccctggtggagagagcaccaccatggccaagttggctgagctccacaatttgttccctgctctgcgtgagtttgtacaaatggggaagccagtttgggggacctgtgcagggctcattttcttggcaaatagagccactgggcagaaaactggaggacagaaactaattggaggccttgattgtactgtacaccgaaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagttgtagctgaagaaggcggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaagaaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggagcgcgttcaactgttgattttcccatataccaatagcaggaaaaaaaattgcttgaaagaaatgcagatcatattaaaaggtcaaatggctactcattgacattgttatgtttttatttttgctaattttcatttgcttatcatacattctaaatgttgttcatgctaaacatgaagtgttgaatgccattcattgttgtacataatagtaaagtattttctctcaaaaatacaaaagaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56598" stop="50228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56299" g_stop="56213" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="215" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54675" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="303" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54674" i_stop="52619" i_length="2056">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52618" g_stop="52545" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="377" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52081" g_stop="51890" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="569" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51217" g_stop="51120" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="667" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50844" g_stop="50530" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="981" r_length="314" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="989" polyA_stop="1015"/>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="C2_At5g60540" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>982</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g60540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56299" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54675"/>
          <exon e_start="52618" e_stop="52545"/>
          <exon e_start="52081" e_stop="51890"/>
          <exon e_start="51217" e_stop="51120"/>
          <exon e_start="50844" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</genome_strand>
        <mrna_strand>GATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATAGCAG..................................................................................TTTTGAAAAGATTAGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGCATGTTAGCTCCCTAATCATCCCTGGTGGAGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTCTGCGTGAGTTTGTACAAATGGGGAAGCCAGTTTGGGGGACCTGTGCAGGGCTCATTTTCTTGGCAAATAGAGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACTGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGAAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTTGTAGCTGAAGAAGGCGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGAAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAGCGCGTTCAACTGTTGATTTTCCCATATACCAATAGCAGGAAAAAAAATTGCTTGAAAGAAATGCAGATCATATTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGCTAATTTTCATTTGCTTATCATACATTCTAAATGTTGTTCATGCTAA-ACATGAAGTGTTGAATGCCATTCATTGTTGTACATAATAGTAAAGTATTTTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="cLEF-43-N8" ref_strand="+" ref_description="cLEF-43-N8">
      <seq>gatcctttttttttcgattttcaaggaagtgtgacgcaggtggccgcctgttagccgccaacagatattatcagtgaagcaaaagcaaaacactcaccaaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="-" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="56782" stop="54394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56482" g_stop="56213" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56003" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="397" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54762" g_stop="54694" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="466" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="-" ref_id="cLEF-43-N8" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="-"/>
        <rDNA rDNA_id="cLEF-43-N8" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56482" e_stop="56213"/>
          <exon e_start="56130" e_stop="56003"/>
          <exon e_start="54762" e_stop="54694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATGCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</genome_strand>
        <mrna_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTGTTAGCCGCCAACAGATATTAT-CAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="C2_At5g60570" ref_strand="+" ref_description="C2_At5g60570">
      <seq>attctctctctaaaaattccggtgagatggtcgccgtaagttcgttttccggcgaatatccgggcgttatagttacctgtgatcggatcgaaacttacttcactccagcaatggaataatcaccacactggtttttatctccggcgacgctaatttgcgactggcagaaataagcagctggatttccgataaggagtcattagcggttggtagtgaattactggtttttggccgtgagttatttgattttgctatatggaaatacagtttgattcaaaacaactgggaaaaatgtgaagggatgaatcatcgtcgttgtctgtttggatcgggtagtcttggttcaatttctattgttgcagggggtagtgacaagaatgggaatgtactaaaatctgccgagctttatgattctttgactggtacatgggaaatactgcccaacatgcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgggttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgtaattccaacacattgtttgatttattagcatttctttttatttaacatctttcaggtgtttgagataagcagttgttcttagctaaaatgtcctcttaactggatggttattttcactcactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="68458" stop="71034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68758" g_stop="68945" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68946" i_stop="69783" i_length="838">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69784" g_stop="70743" g_length="960"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="1148" r_length="960" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="C2_At5g60570" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1148</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g60570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68758" e_stop="68945"/>
          <exon e_start="69784" e_stop="70743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCGGTGAGATCCGAATAGGTTTCCTTACCTGGTTTGGATCCGAATCGCTATCTGTTTTTCCTTACTGAATAATTCATTTCTCATTCAATTTGCCTCTTTTCTCAAGTTTAATAAGCTTTGTTCTGTGTATCTTATATTTTCTGCTTCAAAATAAGGGAAAATTTCTGAATAATATGTGAAATTTGAATCTCAGTGGAAAAAACGCGAGGAAGTTTGAATATTTTGGGTAATATTTCGAACTATTTGATTATAGTTGCTAGAGTTTTGACATACTCATGAAGTTGTAGTAGTTAATAAGCGAGCTGGAGTTCATAGCTTTTTGGTGAGAGAGAAATTGATATTTTGATAAAAAAATTTGGGAATTTTGTGTTTTCAGAAATAAATTTTGTGGCTTTTTTCAAGTGTGTGATTGATTGGAAACTGTGGGTTGTGTATGATAGCATGGCTTCTGAAACTAAGAAGTTGAAGAATGGGTATTTATTTAGGAAGGAGGAAGAGGAGAAGGGGAAGAGAATGAGGTTAGAAGAAGAAGAAGATGATGATGGTCATTGCAAATTTAGATCAAGTGAATCACTTCTTCCAGGCCTACATGATGATGTTGCTTTAACATGTCTTGCTCGGGCATCTAGATCAGATTATGCATCGTTGTCGTGCCTGAATGCTAGGTTTAATTCATTAGTCAAGAGTGGTTATTTATATGAATTAAGGAGGCGGATAAGTGTTGTTGAACACTGGGTTTATATGGTTTGTGATCCTCGGGGTTGGGAGGCTTTTGATCCTTTCAGAAAAAAATGGTTGAGATTACCGAAAATTCCCTGTGATGATTGCTTTAATTATGCAGATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</genome_strand>
        <mrna_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCGGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="C2_At3g53400" ref_strand="-" ref_description="C2_At3g53400">
      <seq>caaactacaaagtggctttcacaataaagcatagtttttaaaacacataacacatatttcttccataaacttacaagagaaacttacagacaagcaactcacatacacacatggacacatacacaagacatcaagtgcagttccagaagggagaaagtaagattacagtatcaactttcaacctacaacctcccctctatttattcccaacatacaataaaagcaaaagttgaagaaaagacgacataaaatgcaccaaactcttgacaaaactctagtctccccaccattgatgagcaaacacaccacttctccttagagttttgaaaatgctcatgcagtccccacaaagagcatttttgcagtctacagccgagcagcgaaggaacagctcatcaacatggcatattgatccagttttgaatagttctgctagaatatttagctctgctgctctagcattcatcatgaggacgacatagtctccatcttcaactgtttcactaaaccaacgaatgaagtcgaatccttcatgatctagcggtgcacccaaatattcgtcagtgtcaacaaatggcaaagtagcctctccggcgacagcgagtcctggatgatacacaaagttaataccaggattcttcacatataaagacagtgcggaggtgttatgatcaatgacgaaaacattgaacaagtggtgaggtatcggataatgaggcttgaatgttcatgaacttgggcaagtatgagatttgtgtctcaaactgtccaagcttcttttccacaagtggctcaaggtgcttcaagtacggcttgttgttcacattggaaggacaattagcaggcagcacagaatgcacgagagattcaacaatctctgatcgtttcttgaacatcactagagtatacgtgccaaccccacatacgtgcacaacatcagaactcttcaagaacaacgaaactggggtggcagaccttatcaagttgccttttatcaagttacccgcgtagaaactactagaacccacgagcataacaccagtgccccctggacgtaagacacgctcaatctcaagcaccataagagctggaacagtaaccttatcaagatcccttgagaacacaaaatcgaaagaattattctcatgatcaagctcatacataaatcttctccatacaagagagaaatacgggtgtgcatcaacaccaacagcactcaagagtcccagttctcgcagcaccaaagctgcatacaacgatttcttcccaacacacaatgcattagcattcaaatccaagaaattattttccattagctccttaaacacattcttggtcaatttttcatcgtcgcgcttcatcaaagacgccccaaacagtggaatcctcaatccataaacgggtttaaagaacccggtcacattcatatactcattagacccaaagttcaaagggcatacaccaaaattcaacattataggttcagatttctgaatcatatgtgtcatttgaacaaatgacacaacaatcataacagtaacaaacaagaaccctttcagaatcaaacgtttcactaatgagccatgaagaaattgccatttcaaaaccttcatatccatttttttttcttttaagatttctaaactttaaagctcaaaactttcaagatctataacagcaaagtgaagttttcacagaagctaaaaagctaaaaacaggagatttaagtctaaaaacaacaaaatcaaacagattaacgagtacaaaacctggatgaagtgtgatttccacccatcattaataccattgtcatttgagatctaagccatacccttttcggaacccttttccccatttcttcaaacggattcagacccatctcaaaaccccaattcatcacccaaaattgagctcgacccacatcatattttcacataaaaatcaaaatctacataataaattagtcaaaaaaattcactcattaactgaaaaggggatcaagatttgtgaaaaaagattgaaactttgggatctgtgaatgaaaaagagtgagtgtgaagtgaaaggatgacagtaggaagatgctataagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="73768" stop="76477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74071" g_stop="74775" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="723" r_length="705" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74776" i_stop="74849" i_length="74">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74850" g_stop="76151" g_length="1302"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="2048" r_length="1325" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="C2_At3g53400" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>2007</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g53400" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74071" e_stop="74775"/>
          <exon e_start="74850" e_stop="76151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAATAAAGCATAGTTCTTAAAACACATAACACATATTT-TTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACT-AAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACAGTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATGAGGCTTGAATGTTCTTGCAAGAGTTGATTCTACGAATTCCCCTGCACCAACGTTGATATACACCAGTTTGTTCCTAGATGAGATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACGAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAGTGCACGAGAGATTGAACAATCTCTGATCTTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACGACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTACCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCGGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGTACAGTGACCTTATCCAGATCCCTCGAGAACACAAAATCGAAAGAATTGTTCTCATGATCGAGCTCGTACATAAATCTTCTCCATACAAGAGAGAAATACGGGTGTGCATCAACACCAACAGCACTCAAGAGTCCCAATTCTCGCAGCACCAAAGCTGCAAACGACGATTTCTTCCCAACACACAATGCATTAGCATTCAAATCCAAGAAATCCTTTTCCATTAGCTCCTTAAACACATCCTTGGTCAATTTTTCGTCGTCCCGCTTCATCAAAGAAGCTCCAAACAGCGAAATCCCCAATCCAGAAACAGGTTTAACGAACCCGGTCACATTCATATACTCATTAGACCCAAAGTTCAAAGGGCATACACCAAAATTCAACATTATAGGTTCAGATTTCTGAATCATATGTGTCATTTGAACAAATGACACAAGAATCATAACAGTAACAAACAAGAACCCTTTCACAATCAAACGTTTCACCAACGACCCATGAATAAATTGCCATTTCAAAACCTTCATATCCA-TTTTTTTTC-TTTAAGA-TT-T---C--T-----T--AAACTTTCAAGATCTATAACAGC-AAGTGAAGTTCTCAC---AG-----AAGCTAAAAACAGTAGATTTAAGCCTAAAAACAACAAATTCAAACAGATTAACGAGTACAAAACCTGGATGAAGTGTGATTTCCACCCACCATTAATACCATTGTCATTTGAGATCTAAGCCACACCCTTTTCGGAACCCTTTTCCCCATTTCTTCAAACGGATTCATACCCATCTCAAAACCCCAATTCATCACCCATTATTGAGCTCGACCCACCTCATATTTTCACATAAAAATCAAAATCTACATACTAAATTAGTCAAAAAAAAAATCACTCAAATACTGAAAAGGGTATCAAGATTTGGGAAAAAAGATTGAAACTTTGGGATCTGTGAATGATAAAGA</genome_strand>
        <mrna_strand>TCACAATAAAGCATAGTTTTTAAAACACATAACACATATTTCTTCCATAAACTTACAAGAGAAACTTACAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCTATTTATTCCCAACATACAATAAAAGCAAAAGTTGAAGAAAAGACGACATAAAATGCAC--CAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAATGCTCATGCAGTCCCCACAAAGAGCATTTTTGCAGTCTACAGCCGAGCAGCGAAGGAACAGCTCATCAACATGGCATATTGATCCAGTTTTGAATAGTTCTGCTAGAATATTTAGCTCTGCTGCTCTAGCATTCATCATGAGGACGACATAGTCTCCATCTTCAACTGTTTCACTAAACCAACGAATGAAGTCGAATCCTTCATGATCTAGCGGTGCACCCAAATATTCGTCAGTGTCAACAAATGGCAAAGTAGCCTCTCCGGCGACAGCGAGTCCTGGATGATACACAAAGTTAATACCAGGATTCTTCACATATAAAGACAGTGCGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGTATCGGATAATGAGGCTTGA..........................................................................ATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACAAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAATGCACGAGAGATTCAACAATCTCTGATCGTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACAACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTATCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCAGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGAACAGTAACCTTATCAAGATCCCTTGAGAACACAAAATCGAAAGAATTATTCTCATGATCAAGCTCATACATAAATCTTCTCCATACAAGAGAGAAATACGGGTGTGCATCAACACCAACAGCACTCAAGAGTCCCAGTTCTCGCAGCACCAAAGCTGCATACAACGATTTCTTCCCAACACACAATGCATTAGCATTCAAATCCAAGAAATTATTTTCCATTAGCTCCTTAAACACATTCTTGGTCAATTTTTCATCGTCGCGCTTCATCAAAGACGCCCCAAACAGTGGAATCCTCAATCCATAAACGGGTTTAAAGAACCCGGTCACATTCATATACTCATTAGACCCAAAGTTCAAAGGGCATACACCAAAATTCAACATTATAGGTTCAGATTTCTGAATCATATGTGTCATTTGAACAAATGACACAACAATCATAACAGTAACAAACAAGAACCCTTTCAGAATCAAACGTTTCACTAATGAGCCATGAAGAAATTGCCATTTCAAAACCTTCATATCCATTTTTTTTTCTTTTAAGATTTCTAAACTTTAAAGCTCAAAACTTTCAAGATCTATAACAGCAAAGTGAAGTTTTCACAGAAGCTAAAAAGCTAAAAACAGGAGATTTAAGTCTAAAAACAACAAAATCAAACAGATTAACGAGTACAAAACCTGGATGAAGTGTGATTTCCACCCATCATTAATACCATTGTCATTTGAGATCTAAGCCATACCCTTTTCGGAACCCTTTTCCCCATTTCTTCAAACGGATTCAGACCCATCTCAAAACCCCAATTCATCACCCAAAATTGAGCTCGACCCACATCATATTTTCACATAAAAATCAAAATCTACATAATAAATTAGTC--AAAAAAATTCACTCATTAACTGAAAAGGGGATCAAGATTTGTGAAAAAAGATTGAAACTTTGGGATCTGTGAATGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="C2_At2g28450" ref_strand="+" ref_description="C2_At2g28450">
      <seq>agctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttctacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatactacacctactgagaatatgtattctacggatagagccgctgaaccggaggaaaaaacaggccttgagtgtaccaatggtaaaagcttgtcagaatcttcagcagatgacactacagaaccagcaacccaacttaagaagtgttcatcagataatttgaccactccagtgcaacatttcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="85247" stop="89590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85547" g_stop="85648" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85760" g_stop="85894" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="237" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86991" g_stop="87086" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="333" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87087" i_stop="88899" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88900" g_stop="89290" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="724" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="C2_At2g28450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At2g28450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85547" e_stop="85648"/>
          <exon e_start="85760" e_stop="85894"/>
          <exon e_start="86991" e_stop="87086"/>
          <exon e_start="88900" e_stop="89290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</genome_strand>
        <mrna_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="T1205" ref_strand="-" ref_description="T1205">
      <seq>ctccagtgcaacatttcaagaatgttgttgcaattgtagatcctccacgtgctggacttcatcccactgttatcaaacttttaaggactaactcacgtctaaggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaagggggataataggaacaacagattatggaggaagatgagcagcgctactcttgcacgacataggaccaaatctatgcccaattcagagccttttaaacctgtcaaagccatggctgttgatctttttccacattctcctcattgtgaactggtgatgcttctggagaggtaaatttatctatttccttaagtgataatcttgagtagccatatttatgtgaggaaatagaaatgttcctttagatttgttctctcaatgtggaaaacaagggatgcgctttcgacaaacagttacttgatatctgttactgatggcagttttgagtcaatcttttactcgtggaagatttccataattttgttttgtaactttttccttattttattaccaatttccagtttcctgattccctgttcggaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="88967" stop="90899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89267" g_stop="89334" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89335" i_stop="89938" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89939" g_stop="89982" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="112" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89983" i_stop="90096" i_length="114">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90097" g_stop="90602" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="618" r_length="506" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="T1205" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="T1205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89267" e_stop="89334"/>
          <exon e_start="89939" e_stop="89982"/>
          <exon e_start="90097" e_stop="90602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACTGTAAGTGATTTCTCTGCTTTCGTCCTTGTTTGTTATCTGGTTTAGTACTTTGTATGCTGGTGCTCTCTAATGTCTGATTGCTCTGTTAGCTACATCGTAAGGCATATGCAACTTGGGAAATCTTCCTTCTGGCGGCCATTGAGAAGATCTGCTTTCCATTTAGGACTCACTTGTTAGACGAGTTTAGTGTAATGTTATTATGACTTTTTATTGTTCAGATAACACCGGAGAATTTTGTATAACATTTCCTCAACTTCTAGTTGCTGCATGCATCAAGTTCTGCATGGAGGCCAGAATCTTGGTGTTACGAGTAAAAGATTACGCTGGAAATGGGAGGATATAGTGTAATAAACAGAAATTCGTGCCATATGTGGATGACAGAAAATTTGGTTCCTTATGATGCTGGTCACCAGTCTCTAAGCTATATGCACGGATGAAGAGTTCATCTTATCGTTGATCTAATCCCTGTTTTATCTGACCCTCAGGATAGATATTACAATGTGATTCCTACATTCTTTGTGCTACTATGTGCTTCCTACGTTTTTGAAATGTTGAGACTTGAAATGAGCTACTTTGTGCTAATTTTTGGTCTCTATGCTTGTAGGTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATAC</genome_strand>
        <mrna_strand>CTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTCTGGAGAGGTAAATTTATCTATTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTAGATTTGTTCTCTCAATGTGGAAAACAAGGGATGCGCTTTCGACAAACAGTTACTTGATATCTGTTACTGATGGCAGTTTTGAGTCAATCTTTTACTCGTGGAAGATTTCCATAATTTTGTTTTGTAACTTTTTCCTTATTTTATTACCAATTTCCAGTTTCCTGATTCCCTGTTCGGAAAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="cTOD-6-J17" ref_strand="+" ref_description="cTOD-6-J17">
      <seq>ttttattatacaaagtaacaaacattctggttctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="97543" stop="99598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97843" g_stop="98116" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99014" g_stop="99298" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="559" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="cTOD-6-J17" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="cTOD-6-J17" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97843" e_stop="98116"/>
          <exon e_start="99014" e_stop="99298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</genome_strand>
        <mrna_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="cSTB-32-G8" ref_strand="+" ref_description="cSTB-32-G8">
      <seq>gtagactgcactttcttgagatatatatataaacagaggaaagttgcagaagggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatataccctcgaggtgctctttcatattcactcatcgtgtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactgtatggctntgcttgtgatgcttgttctgctgaggcagtgaatcgtatatatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="102875" stop="106352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103153" g_stop="103313" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103926" g_stop="104163" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="392" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104164" i_stop="105966" i_length="1803">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105967" g_stop="106052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="cSTB-32-G8" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="cSTB-32-G8" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103153" e_stop="103313"/>
          <exon e_start="103926" e_stop="104163"/>
          <exon e_start="105967" e_stop="106052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTACACTTTCTTGAGATATATATCTAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATG</genome_strand>
        <mrna_strand>GTAGACTGCACTTTCTTGAGATATATA--T--ATAAACAGAGGAAAGTTGCAGAAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATA-CC--CTCGAGGTGCTCTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTGTATGGCTNTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATATATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-rgNUMM/sgn_marker_seqs" ref_id="cLER-17-M8" ref_strand="+" ref_description="cLER-17-M8">
      <seq>tgcagcatacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctgtattagagagcataggggttcgagtgccagactgtaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-z77iU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0161D01.1" temp_strand="+" temp_description="C11HBa0161D01.1  AC212437.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0161D01 sequenced_by:ivf-caas">
        <position start="102924" stop="106761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103224" g_stop="103313" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103926" g_stop="104163" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104164" i_stop="106076" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106077" g_stop="106142" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106384" g_stop="106461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.1" gen_strand="+" ref_id="cLER-17-M8" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.1" gen_strand="+"/>
        <rDNA rDNA_id="cLER-17-M8" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103224" e_stop="103313"/>
          <exon e_start="103926" e_stop="104163"/>
          <exon e_start="106077" e_stop="106142"/>
          <exon e_start="106384" e_stop="106461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</genome_strand>
        <mrna_strand>TGCAGCATACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGTATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="56482" PGL_stop="50530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56482" e_stop="56213"/>
            <exon e_start="56130" e_stop="56003"/>
            <exon e_start="54762" e_stop="54675"/>
            <exon e_start="52618" e_stop="52545"/>
            <exon e_start="52081" e_stop="51890"/>
            <exon e_start="51217" e_stop="51120"/>
            <exon e_start="50844" e_stop="50530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="0.973"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="0.964"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="0.990"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="56482" e_stop="56213" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56212" i_stop="56131" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56130" e_stop="56003" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56002" i_stop="54763" i_length="1240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54762" e_stop="54675" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="54674" i_stop="52619" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="52618" e_stop="52545" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52544" i_stop="52082" i_length="463"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="52081" e_stop="51890" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51889" i_stop="51218" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="51217" e_stop="51120" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51119" i_stop="50845" i_length="275"/>
          </intron>
          <exon e_serial="7" e_score="0.956">
            <gDNA_exon_boundary e_start="50844" e_stop="50530" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56482" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLEF-43-N8" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56299" stop="56213"/>
              <exon start="56130" stop="56003"/>
              <exon start="54762" stop="54675"/>
              <exon start="52618" stop="52545"/>
              <exon start="52081" stop="51890"/>
              <exon start="51217" stop="51120"/>
              <exon start="50844" stop="50530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g60540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATGCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG : TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG : TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG : GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</gDNA_template>
            <first_frame> D  P  F  F  F  D  F  Q  G  S  V  T  Q  V  A  A  S  *  P  P  T  D  I  M  Q  *  S  K  S  K  T  L  T  K  F  T  L  F  S  I  P  L  N  S  L  A  A  I  A  V  S  R  L  C  F  F  *  Y  P  F  V  N  F  H  C  F  L  I  L  Q  L  E  K  W  L  W  V  F  L  L  Y  R  D  L  S  M  N  T  L  Q  :  F  *  K  D  W  E  *  K  V  W  R  *  E  S  Q  S  S  C  *  M  L  A  P  *  S  S  L  V  G  R  A  P  P  W  P  S  W  L  S  S  T  I  C :   S  L  L  C  V  S  L  F  K  W  G  S  Q  Y  G  G  H  V  Q  V  S  F  S  W  Q  I  R  P  L  :  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  </first_frame>
            <second_frame>  I  L  F  F  S  I  F  K  E  V  *  R  R  W  P  P  L  S  R  Q  Q  I  L  C  S  E  A  K  A  K  H  S  P  N  S  P  F  F  L  Y  P  *  T  P  *  P  Q  L  L  F  Q  D  C  V  F  F  S  T  L  L  L  I  F  I  V  S  *  F  C  N  L  K  N  G  C  G  C  S  C  F  T  G  I  F  Q  *  T  H  C  S :   F  E  K  I  G  S  E  R  C  G  G  E  K  A  R  A  V  A  E  C  *  L  P  N  H  P  W  W  G  E  H  H  H  G  Q  V  G  *  A  P  Q  F   : V  P  C  F  A  *  V  C  S  N  G  E  A  S  M  G  D  M  C  R  S  H  F  L  G  K  *  G  H  W :   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S </second_frame>
            <third_frame>   S  F  F  F  R  F  S  R  K  C  D  A  G  G  R  L  L  A  A  N  R  Y  Y  A  V  K  Q  K  Q  N  T  H  Q  I  H  P  F  F  Y  T  L  K  L  L  S  R  N  C  C  F  K  I  V  F  F  L  V  P  F  C  *  F  S  L  F  L  D  F  A  T  *  K  M  V  V  G  V  L  A  L  Q  G  S  F  N  E  H  I  A   : V  L  K  R  L  G  V  K  G  V  E  V  R  K  P  E  Q  L  L  N  V  S  S  L  I  I  P  G  G  E  S  T  T  M  A  K  L  A  E  L  H  N  L  :  F  P  A  L  R  E  F  V  Q  M  G  K  P  V  W  G  T  C  A  G  L  I  F  L  A  N  K  A  T   : G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56267" stop="56213"/>
                    <exon start="56130" stop="56003"/>
                    <exon start="54762" stop="54675"/>
                    <exon start="52618" stop="52545"/>
                    <exon start="52081" stop="51890"/>
                    <exon start="51217" stop="51120"/>
                    <exon start="50844" stop="50721"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQLLNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="68758" PGL_stop="70743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68758" e_stop="68945"/>
            <exon e_start="69784" e_stop="70743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.995"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68758" e_stop="68945" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68946" i_stop="69783" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="69784" e_stop="70743" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68758" stop="68945"/>
              <exon start="69784" stop="70743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g60570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG : ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</gDNA_template>
            <first_frame> I  L  S  L  K  I  P  V  R  W  S  P  *  V  R  F  P  A  N  I  P  A  L  *  L  P  V  I  G  S  K  L  T  S  L  Q  Q  W  N  N  H  H  T  G  F  Y  L  R  R  R  *  F  A  T  G  R  N  K  Q  L  D  F  R :   *  G  V  I  S  G  W  *  *  I  T  G  F  W  P  *  V  I  *  F  C  Y  M  E  I  Q  F  D  S  K  Q  L  G  K  M  *  R  D  E  S  S  S  L  S  V  W  I  G  *  S  W  F  N  F  Y  C  C  R  G  *  *  Q  E  W  E  C  T  K  I  C  R  A  L  *  F  F  D  W  Y  M  G  N  T  A  Q  H  A  F  S  P  Q  I  M  L  W  L  F  H  G  W  K  I  L  C  D  R  W  D  D  *  S  Y  R  F  F  D  L  W  G  R  V  *  S  T  N  K  E  V  E  E  N  *  G  H  V  S  K  R  Q  *  S  C  S  G  T  S  S  C  C  S  C  *  *  P  T  I  C  S  *  I  S  N  Q  H  G  *  E  V  *  Q  E  K  *  L  M  G  G  I  G  K  T  S  R  E  G  *  F  F  E  W  L  G  S  C  F  Q  S  M  W  *  R  T  S  C  G  R  W  Q  Q  G  S  R  R  *  S  Y  Y  I  E  F  L  G  T  K  I  R  V  *  R  R  H  L  G  L  E  G  H  R  P  K  R  A  F  W  C  L  C  I  Q  L  C  R  D  G  L  L  R  L  I  Q  P  N  G  E  R  S  H  L  F  Q  L  L  F  L  A  *  F  Q  H  I  V  *  F  I  S  I  S  F  Y  L  T  S  F  R  C  L  R  *  A  V  V  L  S  *  N  V  L  L  T  G  W  L  F  S  L  T  H  S  A   </first_frame>
            <second_frame>  F  S  L  *  K  F  R  *  D  G  R  R  K  F  V  F  R  R  I  S  R  R  Y  S  Y  L  *  S  D  R  N  L  L  H  S  S  N  G  I  I  T  T  L  V  F  I  S  G  D  A  N  L  R  L  A  E  I  S  S  W  I  S   : D  K  E  S  L  A  V  G  S  E  L  L  V  F  G  R  E  L  F  D  F  A  I  W  K  Y  S  L  I  Q  N  N  W  E  K  C  E  G  M  N  H  R  R  C  L  F  G  S  G  S  L  G  S  I  S  I  V  A  G  G  S  D  K  N  G  N  V  L  K  S  A  E  L  Y  D  S  L  T  G  T  W  E  I  L  P  N  M  H  S  P  R  R  L  C  S  G  F  F  M  D  G  K  F  Y  V  I  G  G  M  T  N  P  T  D  S  L  T  C  G  E  E  F  D  L  Q  T  R  K  W  R  K  I  E  G  M  Y  P  N  V  N  R  A  A  Q  A  P  P  L  V  A  V  V  N  N  Q  L  Y  A  V  E  Y  L  T  N  M  V  K  K  Y  D  K  K  N  N  S  W  E  V  L  G  R  L  P  V  R  A  D  S  S  N  G  W  G  L  A  F  K  A  C  G  E  E  L  L  V  V  G  G  N  R  G  P  E  G  E  A  I  I  L  S  S  W  A  P  K  S  G  C  K  D  G  T  L  D  W  K  V  I  G  L  K  E  H  S  G  V  F  V  Y  N  C  A  V  M  G  C  *  D  S  S  N  Q  M  E  K  E  V  I  C  F  N  C  C  F  *  R  N  S  N  T  L  F  D  L  L  A  F  L  F  I  *  H  L  S  G  V  *  D  K  Q  L  F  L  A  K  M  S  S  *  L  D  G  Y  F  H  S  L  I  L  Q  </second_frame>
            <third_frame>   S  L  S  K  N  S  G  E  M  V  A  V  S  S  F  S  G  E  Y  P  G  V  I  V  T  C  D  R  I  E  T  Y  F  T  P  A  M  E  *  S  P  H  W  F  L  S  P  A  T  L  I  C  D  W  Q  K  *  A  A  G  F  P  :  I  R  S  H  *  R  L  V  V  N  Y  W  F  L  A  V  S  Y  L  I  L  L  Y  G  N  T  V  *  F  K  T  T  G  K  N  V  K  G  *  I  I  V  V  V  C  L  D  R  V  V  L  V  Q  F  L  L  L  Q  G  V  V  T  R  M  G  M  Y  *  N  L  P  S  F  M  I  L  *  L  V  H  G  K  Y  C  P  T  C  I  L  P  A  D  Y  A  L  A  F  S  W  M  E  N  F  M  *  *  V  G  *  L  I  L  P  I  L  *  L  V  G  K  S  L  I  Y  K  Q  G  S  G  G  K  L  R  A  C  I  Q  T  S  I  E  L  L  R  H  L  L  L  L  Q  L  L  I  T  N  Y  M  Q  L  N  I  *  P  T  W  L  R  S  M  T  R  K  I  T  H  G  R  Y  W  E  D  F  P  *  G  L  I  L  R  M  V  G  V  L  L  S  K  H  V  V  K  N  F  L  W  *  V  A  T  G  V  Q  K  V  K  L  L  Y  *  V  L  G  H  Q  N  Q  G  V  K  T  A  P  W  I  G  R  S  S  A  *  K  S  I  L  V  S  L  Y  T  I  V  P  *  W  V  V  E  T  H  P  T  K  W  R  K  K  S  F  V  S  T  V  V  S  S  V  I  P  T  H  C  L  I  Y  *  H  F  F  L  F  N  I  F  Q  V  F  E  I  S  S  C  S  *  L  K  C  P  L  N  W  M  V  I  F  T  H  S  F  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68840" stop="68945"/>
                    <exon start="69784" stop="70553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDRNLLHSSNGIITTLVFISGDANLRLAEISSWISDKESLAVGSELLVFGRELFDFAIWKYSLIQNNWEKCEGMNHRRCLFGSGSLGSISIVAGGSDKNGNVLKSAELYDSLTGTWEILPNMHSPRRLCSGFFMDGKFYVIGGMTNPTDSLTCGEEFDLQTRKWRKIEGMYPNVNRAAQAPPLVAVVNNQLYAVEYLTNMVKKYDKKNNSWEVLGRLPVRADSSNGWGLAFKACGEELLVVGGNRGPEGEAIILSSWAPKSGCKDGTLDWKVIGLKEHSGVFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="74071" PGL_stop="76151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74071" e_stop="74775"/>
            <exon e_start="74850" e_stop="76151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="74071" e_stop="74775" e_length="705"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74776" i_stop="74849" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="74850" e_stop="76151" e_length="1302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74071" stop="74775"/>
              <exon start="74850" stop="76151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g53400" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAATAAAGCATAGTTCTTAAAACACATAACACATATTTTTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACAGTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATGAGGCTTGA : ATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACGAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAGTGCACGAGAGATTGAACAATCTCTGATCTTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACGACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTACCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCGGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGTACAGTGACCTTATCCAGATCCCTCGAGAACACAAAATCGAAAGAATTGTTCTCATGATCGAGCTCGTACATAAATCTTCTCCATACAAGAGAGAAATACGGGTGTGCATCAACACCAACAGCACTCAAGAGTCCCAATTCTCGCAGCACCAAAGCTGCAAACGACGATTTCTTCCCAACACACAATGCATTAGCATTCAAATCCAAGAAATCCTTTTCCATTAGCTCCTTAAACACATCCTTGGTCAATTTTTCGTCGTCCCGCTTCATCAAAGAAGCTCCAAACAGCGAAATCCCCAATCCAGAAACAGGTTTAACGAACCCGGTCACATTCATATACTCATTAGACCCAAAGTTCAAAGGGCATACACCAAAATTCAACATTATAGGTTCAGATTTCTGAATCATATGTGTCATTTGAACAAATGACACAAGAATCATAACAGTAACAAACAAGAACCCTTTCACAATCAAACGTTTCACCAACGACCCATGAATAAATTGCCATTTCAAAACCTTCATATCCATTTTTTTTCTTTAAGATTTCTTAAACTTTCAAGATCTATAACAGCAAGTGAAGTTCTCACAGAAGCTAAAAACAGTAGATTTAAGCCTAAAAACAACAAATTCAAACAGATTAACGAGTACAAAACCTGGATGAAGTGTGATTTCCACCCACCATTAATACCATTGTCATTTGAGATCTAAGCCACACCCTTTTCGGAACCCTTTTCCCCATTTCTTCAAACGGATTCATACCCATCTCAAAACCCCAATTCATCACCCATTATTGAGCTCGACCCACCTCATATTTTCACATAAAAATCAAAATCTACATACTAAATTAGTCAAAAAAAAAATCACTCAAATACTGAAAAGGGTATCAAGATTTGGGAAAAAAGATTGAAACTTTGGGATCTGTGAATGATAAAGA</gDNA_template>
            <first_frame> S  Q  *  S  I  V  L  K  T  H  N  T  Y  F  Y  I  N  S  K  K  K  L  R  D  K  Q  L  T  Y  T  H  G  H  I  H  K  T  S  S  A  V  P  E  G  R  K  *  D  Y  S  I  N  F  Q  P  T  T  S  P  Q  F  I  P  N  R  H  *  S  K  S  *  T  Q  D  N  I  K  C  T  *  N  S  *  Q  N  S  S  L  P  T  I  D  E  Q  T  H  H  F  S  L  E  F  *  K  G  S  C  S  L  H  K  E  H  F  C  N  L  Q  R  S  S  E  G  T  A  H  R  R  G  I  L  I  Q  F  G  I  V  L  L  E  C  L  A  L  V  L  *  H  S  S  *  G  *  H  S  L  R  L  *  L  F  H  *  T  N  E  *  S  R  I  L  H  D  L  V  V  H  P  N  I  R  Q  C  Q  Q  M  T  K  *  S  L  R  R  Q  Q  V  L  D  G  T  Q  S  *  Y  Q  D  S  S  H  I  R  T  V  W  R  C  Y  D  Q  *  R  K  H  *  T  S  G  E  G  L  D  N  E  A  *  :  M  F  M  N  L  G  K  Y  E  I  C  V  S  N  C  P  S  F  F  S  T  S  G  S  R  C  F  K  Y  G  L  L  F  T  L  E  G  Q  L  A  G  S  T  E  C  T  R  D  *  T  I  S  D  L  F  L  N  I  T  R  V  Y  V  P  T  P  H  T  C  T  T  S  E  L  F  K  N  D  E  T  G  V  A  D  L  I  K  L  P  F  T  K  L  P  A  *  K  L  L  E  P  T  S  I  T  P  V  P  P  G  R  K  T  R  S  I  S  S  T  I  R  A  G  T  V  T  L  S  R  S  L  E  N  T  K  S  K  E  L  F  S  *  S  S  S  Y  I  N  L  L  H  T  R  E  K  Y  G  C  A  S  T  P  T  A  L  K  S  P  N  S  R  S  T  K  A  A  N  D  D  F  F  P  T  H  N  A  L  A  F  K  S  K  K  S  F  S  I  S  S  L  N  T  S  L  V  N  F  S  S  S  R  F  I  K  E  A  P  N  S  E  I  P  N  P  E  T  G  L  T  N  P  V  T  F  I  Y  S  L  D  P  K  F  K  G  H  T  P  K  F  N  I  I  G  S  D  F  *  I  I  C  V  I  *  T  N  D  T  R  I  I  T  V  T  N  K  N  P  F  T  I  K  R  F  T  N  D  P  *  I  N  C  H  F  K  T  F  I  S  I  F  F  L  *  D  F  L  N  F  Q  D  L  *  Q  Q  V  K  F  S  Q  K  L  K  T  V  D  L  S  L  K  T  T  N  S  N  R  L  T  S  T  K  P  G  *  S  V  I  S  T  H  H  *  Y  H  C  H  L  R  S  K  P  H  P  F  R  N  P  F  P  H  F  F  K  R  I  H  T  H  L  K  T  P  I  H  H  P  L  L  S  S  T  H  L  I  F  S  H  K  N  Q  N  L  H  T  K  L  V  K  K  K  I  T  Q  I  L  K  R  V  S  R  F  G  K  K  D  *  N  F  G  I  C  E  *  *  R </first_frame>
            <second_frame>  H  N  K  A  *  F  L  K  H  I  T  H  I  F  I  *  T  Q  K  R  N  L  E  T  S  N  S  H  T  H  M  D  T  Y  T  R  H  Q  V  Q  F  Q  K  G  E  S  K  I  T  V  S  T  F  N  L  Q  P  P  L  N  L  F  P  T  D  T  K  A  K  V  E  H  K  T  T  *  N  A  L  K  T  L  D  K  T  L  V  S  P  P  L  M  S  K  H  T  T  S  P  *  S  F  E  K  A  H  A  V  S  T  K  S  I  S  A  I  C  S  G  A  A  K  E  Q  L  I  D  V  A  Y  *  S  S  L  E  *  F  C  *  N  V  *  L  W  C  S  S  I  H  H  E  D  D  I  V  S  V  F  N  C  F  T  K  P  M  N  E  V  E  S  F  M  I  *  W  C  T  Q  I  F  V  S  V  N  R  *  Q  S  S  L  S  G  D  S  K  S  W  M  V  H  K  V  N  T  R  I  L  H  I  *  G  Q  C  G  G  V  M  I  N  D  E  N  I  E  Q  V  V  R  D  W  I  M  R  L  E :   C  S  *  T  W  A  S  M  R  F  V  S  Q  T  V  Q  A  S  F  P  R  V  A  Q  G  A  S  S  T  A  C  C  S  H  W  K  D  N  *  Q  A  A  Q  S  A  R  E  I  E  Q  S  L  I  F  S  *  T  S  L  E  Y  T  C  Q  P  H  I  R  A  Q  H  Q  N  S  S  R  T  T  K  L  G  W  Q  T  L  S  S  C  L  L  P  S  Y  P  R  R  N  Y  *  N  P  R  A  *  H  R  C  P  L  D  V  R  H  A  Q  S  Q  A  P  *  E  L  V  Q  *  P  Y  P  D  P  S  R  T  Q  N  R  K  N  C  S  H  D  R  A  R  T  *  I  F  S  I  Q  E  R  N  T  G  V  H  Q  H  Q  Q  H  S  R  V  P  I  L  A  A  P  K  L  Q  T  T  I  S  S  Q  H  T  M  H  *  H  S  N  P  R  N  P  F  P  L  A  P  *  T  H  P  W  S  I  F  R  R  P  A  S  S  K  K  L  Q  T  A  K  S  P  I  Q  K  Q  V  *  R  T  R  S  H  S  Y  T  H  *  T  Q  S  S  K  G  I  H  Q  N  S  T  L  *  V  Q  I  S  E  S  Y  V  S  F  E  Q  M  T  Q  E  S  *  Q  *  Q  T  R  T  L  S  Q  S  N  V  S  P  T  T  H  E  *  I  A  I  S  K  P  S  Y  P  F  F  F  F  K  I  S  *  T  F  K  I  Y  N  S  K  *  S  S  H  R  S  *  K  Q  *  I  *  A  *  K  Q  Q  I  Q  T  D  *  R  V  Q  N  L  D  E  V  *  F  P  P  T  I  N  T  I  V  I  *  D  L  S  H  T  L  F  G  T  L  F  P  I  S  S  N  G  F  I  P  I  S  K  P  Q  F  I  T  H  Y  *  A  R  P  T  S  Y  F  H  I  K  I  K  I  Y  I  L  N  *  S  K  K  K  S  L  K  Y  *  K  G  Y  Q  D  L  G  K  K  I  E  T  L  G  S  V  N  D  K   </second_frame>
            <third_frame>   T  I  K  H  S  S  *  N  T  *  H  I  F  L  Y  K  L  K  K  E  T  *  R  Q  A  T  H  I  H  T  W  T  H  T  Q  D  I  K  C  S  S  R  R  E  K  V  R  L  Q  Y  Q  L  S  T  Y  N  L  P  S  I  Y  S  Q  Q  T  L  K  Q  K  L  N  T  R  Q  H  K  M  H  L  K  L  L  T  K  L  *  S  P  H  H  *  *  A  N  T  P  L  L  L  R  V  L  K  R  L  M  Q  S  P  Q  R  A  F  L  Q  S  A  A  E  Q  R  R  N  S  S  S  T  W  H  I  D  P  V  W  N  S  S  A  R  M  F  S  S  G  A  L  A  F  I  M  R  M  T  *  S  P  S  L  T  V  S  L  N  Q  *  M  K  S  N  P  S  *  S  S  G  A  P  K  Y  S  S  V  S  T  D  D  K  V  V  S  P  A  T  A  S  P  G  W  Y  T  K  L  I  P  G  F  F  T  Y  K  D  S  V  E  V  L  *  S  M  T  K  T  L  N  K  W  *  G  I  G  *  *  G  L   : N  V  H  E  L  G  Q  V  *  D  L  C  L  K  L  S  K  L  L  F  H  E  W  L  K  V  L  Q  V  R  L  V  V  H  I  G  R  T  I  S  R  Q  H  R  V  H  E  R  L  N  N  L  *  S  F  L  E  H  H  *  S  I  R  A  N  P  T  Y  V  H  N  I  R  T  L  Q  E  R  R  N  W  G  G  R  P  Y  Q  V  A  F  Y  Q  V  T  R  V  E  T  T  R  T  H  E  H  N  T  G  A  P  W  T  *  D  T  L  N  L  K  H  H  K  S  W  Y  S  D  L  I  Q  I  P  R  E  H  K  I  E  R  I  V  L  M  I  E  L  V  H  K  S  S  P  Y  K  R  E  I  R  V  C  I  N  T  N  S  T  Q  E  S  Q  F  S  Q  H  Q  S  C  K  R  R  F  L  P  N  T  Q  C  I  S  I  Q  I  Q  E  I  L  F  H  *  L  L  K  H  I  L  G  Q  F  F  V  V  P  L  H  Q  R  S  S  K  Q  R  N  P  Q  S  R  N  R  F  N  E  P  G  H  I  H  I  L  I  R  P  K  V  Q  R  A  Y  T  K  I  Q  H  Y  R  F  R  F  L  N  H  M  C  H  L  N  K  *  H  K  N  H  N  S  N  K  Q  E  P  F  H  N  Q  T  F  H  Q  R  P  M  N  K  L  P  F  Q  N  L  H  I  H  F  F  S  L  R  F  L  K  L  S  R  S  I  T  A  S  E  V  L  T  E  A  K  N  S  R  F  K  P  K  N  N  K  F  K  Q  I  N  E  Y  K  T  W  M  K  C  D  F  H  P  P  L  I  P  L  S  F  E  I  *  A  T  P  F  S  E  P  F  S  P  F  L  Q  T  D  S  Y  P  S  Q  N  P  N  S  S  P  I  I  E  L  D  P  P  H  I  F  T  *  K  S  K  S  T  Y  *  I  S  Q  K  K  N  H  S  N  T  E  K  G  I  K  I  W  E  K  R  L  K  L  W  D  L  *  M  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75276" stop="75620"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSYINLLHTREKYGCASTPTALKSPNSRSTKAANDDFFPTHNALAFKSKKSFSISSLNTSLVNFSSSRFIKEAPNSEIPNPETGLTNPVTFIYSLDPKFKGHTPKFNIIGSDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75647" stop="75925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKNHNSNKQEPFHNQTFHQRPMNKLPFQNLHIHFFSLRFLKLSRSITASEVLTEAKNSRFKPKNNKFKQINEYKTWMKCDFHPPLIPLSFEI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75185" stop="75442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTLNLKHHKSWYSDLIQIPREHKIERIVLMIELVHKSSPYKREIRVCINTNSTQESQFSQHQSCKRRFLPNTQCISIQIQEILFH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75903" stop="76124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHCHLRSKPHPFRNPFPHFFKRIHTHLKTPIHHPLLSSTHLIFSHKNQNLHTKLVKKKITQILKRVSRFGKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="85547" PGL_stop="90602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85547" e_stop="85648"/>
            <exon e_start="85760" e_stop="85894"/>
            <exon e_start="86991" e_stop="87086"/>
            <exon e_start="88900" e_stop="89334"/>
            <exon e_start="89939" e_stop="89982"/>
            <exon e_start="90097" e_stop="90602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85547" e_stop="85648" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85649" i_stop="85759" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85760" e_stop="85894" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.891">
            <gDNA_intron_boundary i_start="85895" i_stop="86990" i_length="1096"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86991" e_stop="87086" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.752" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87087" i_stop="88899" i_length="1813"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88900" e_stop="89334" e_length="435"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="89335" i_stop="89938" i_length="604"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89939" e_stop="89982" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.273" acc_prob="0.980">
            <gDNA_intron_boundary i_start="89983" i_stop="90096" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="90097" e_stop="90602" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85547" stop="85648"/>
              <exon start="85760" stop="85894"/>
              <exon start="86991" stop="87086"/>
              <exon start="88900" stop="89290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g28450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89267" stop="89334"/>
              <exon start="89939" stop="89982"/>
              <exon start="90097" stop="90602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1205" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG : GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG : GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG : GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT : GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT : TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATAC</gDNA_template>
            <first_frame> S  Y  S  E  L  H  A  D  N  A  V  A  E  A  K  I  H  D  F  I  N  G  L  K  F  C  I  S  P  T  A  F  F  Q  :  V  N  T  L  A  A  E  K  L  Y  S  L  A  G  D  W  A  S  L  G  P  D  T  L  L  F  D  V  C  C  G  T  G  T  I  G  L  T  L  A  N  R  V  G  M  :  V  V  G  I  E  M  N  A  S  A  V  S  D  A  Q  R  N  A  E  I  N  G  I  K  N  C  R  F  I  C  G  K  :  A  E  D  V  M  G  S  V  L  K  E  Y  L  A  S  P  A  K  V  D  G  L  L  D  I  E  E  K  K  N  Q  E  N  T  T  S  T  E  K  T  D  S  I  V  N  A  S  K  T  D  G  E  S  S  T  G  S  E  N  G  K  S  M  C  I  D  Q  D  T  T  P  T  E  N  M  Y  S  T  D  R  A  A  E  P  E  E  K  T  G  L  E  C  T  N  G  K  S  L  S  E  S  S  A  D  D  T  T  E  P  A  T  Q  L  K  K  C  S  S  D  N  L  T  T  P  V  Q  H  F  K  N  V  V  A  I  V  D  P  P  R  A  G  L  H  P  T  :  V  I  K  L  L  R  T  N  S  R  L  R  R  L  V :   Y  I  S  C  N  P  E  S  L  V  A  N  A  I  E  L  C  T  P  S  P  D  E  S  E  K  G  D  N  R  N  N  R  L  W  R  K  M  S  S  A  T  L  A  R  H  R  T  K  S  M  P  N  S  E  P  F  K  P  V  K  A  M  A  V  D  L  F  P  H  S  P  H  C  E  L  V  M  L  L  E  R  *  I  Y  L  F  P  *  V  I  I  L  S  S  H  I  Y  V  R  K  *  K  C  S  F  I  F  V  L  S  M  W  K  T  R  D  V  L  S  T  N  S  Y  *  I  S  V  T  D  G  S  F  E  A  I  F  Y  S  W  K  I  S  I  I  L  F  C  N  F  F  L  I  L  L  P  T  S  S  S  L  I  P  C  S  K  R  I  </first_frame>
            <second_frame>  A  I  L  N  C  M  Q  I  M  Q  L  L  K  Q  K  F  T  I  L  L  M  D  L  S  F  V  F  R  R  R  P  S  F  R :   *  T  P  L  L  Q  R  S  Y  T  L  L  Q  G  T  G  P  A  W  V  L  I  P  Y  F  L  T  F  A  V  E  L  E  Q  L  V  L  L  W  Q  I  E  L  V  W :   L  L  A  L  K  *  M  L  L  L  F  L  M  L  K  E  M  L  K  S  M  G  *  R  T  V  D  L  F  V  E  R :   Q  R  M  S  W  D  L  Y  *  K  N  I  L  L  H  L  R  K  *  M  D  F  *  I  *  K  K  R  K  T  K  K  I  L  L  L  Q  R  R  L  I  L  *  L  T  H  R  K  Q  M  G  S  Q  V  L  G  L  K  M  V  K  A  C  A  L  I  K  I  L  H  L  L  R  I  C  I  L  R  I  E  P  L  N  R  R  K  K  Q  A  L  S  V  P  M  V  K  A  C  Q  N  L  Q  Q  M  T  L  Q  N  Q  Q  P  N  L  R  S  V  H  Q  I  I  *  P  L  Q  C  N  I  S  R  M  L  L  Q  L  *  I  L  H  V  L  D  F  I  P  L :   L  S  N  F  *  G  L  T  H  V  *  G  G  L   : F  T  F  P  V  I  L  K  A  W  L  Q  T  L  L  S  S  A  H  L  L  Q  T  N  R  K  R  G  I  I  G  T  T  D  Y  G  G  R  *  A  A  L  L  L  H  D  I  G  P  N  L  C  P  I  Q  S  L  L  N  L  S  K  P  W  L  L  I  F  F  H  I  L  L  I  V  N  W  *  C  F  W  R  G  K  F  I  C  F  L  K  *  *  S  *  V  A  I  F  M  *  G  N  R  N  V  P  L  Y  L  F  S  Q  C  G  K  Q  G  M  C  F  R  Q  T  V  T  R  Y  L  L  L  M  A  V  L  R  Q  S  F  T  R  G  R  F  P  *  Y  C  F  V  T  F  S  L  F  Y  Y  Q  L  P  V  P  *  F  P  V  R  K  E  Y </second_frame>
            <third_frame>   L  F  *  T  A  C  R  *  C  S  C  *  S  K  N  S  R  F  Y  *  W  T  *  V  L  Y  F  A  D  G  L  L  S   : G  E  H  P  C  C  R  E  V  I  L  S  C  R  G  L  G  Q  L  G  S  *  Y  L  T  F  *  R  L  L  W  N  W  N  N  W  S  Y  S  G  K  S  S  W  Y   : G  C  W  H  *  N  E  C  F  C  C  F  *  C  S  K  K  C  *  N  Q  W  D  K  E  L  *  I  Y  L  W  K   : G  R  G  C  H  G  I  C  T  E  R  I  S  C  F  T  C  E  S  R  W  T  S  R  Y  R  R  K  E  K  P  R  K  Y  Y  F  Y  R  E  D  *  F  Y  S  *  R  I  E  N  R  W  G  V  K  Y  W  V  *  K  W  *  K  H  V  H  *  S  R  Y  Y  T  Y  *  E  Y  V  F  Y  G  *  S  R  *  T  G  G  K  N  R  P  *  V  Y  Q  W  *  K  L  V  R  I  F  S  R  *  H  Y  R  T  S  N  P  T  *  E  V  F  I  R  *  F  D  H  S  S  A  T  F  Q  E  C  C  C  N  C  R  S  S  T  C  W  T  S  S  H   : C  Y  Q  T  F  K  D  *  L  T  S  K  E  A  C  :  L  H  F  L  *  S  *  K  L  G  C  K  R  Y  *  A  L  H  T  F  S  R  R  I  G  K  G  G  *  *  E  Q  Q  I  M  E  E  D  E  Q  R  Y  S  C  T  T  *  D  Q  I  Y  A  Q  F  R  A  F  *  T  C  Q  S  H  G  C  *  S  F  S  T  F  S  S  L  *  T  G  D  A  F  G  E  V  N  L  S  V  S  L  S  D  N  L  E  *  P  Y  L  C  E  E  I  E  M  F  L  Y  I  C  S  L  N  V  E  N  K  G  C  A  F  D  K  Q  L  L  D  I  C  Y  *  W  Q  F  *  G  N  L  L  L  V  E  D  F  H  N  I  V  L  *  L  F  P  Y  F  I  T  N  F  Q  F  P  D  S  L  F  E  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85547" stop="85648"/>
                    <exon start="85760" stop="85894"/>
                    <exon start="86991" stop="87086"/>
                    <exon start="88900" stop="89334"/>
                    <exon start="89939" stop="89982"/>
                    <exon start="90097" stop="90346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSELHADNAVAEAKIHDFINGLKFCISPTAFFQVNTLAAEKLYSLAGDWASLGPDTLLFDVCCGTGTIGLTLANRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFICGKAEDVMGSVLKEYLASPAKVDGLLDIEEKKNQENTTSTEKTDSIVNASKTDGESSTGSENGKSMCIDQDTTPTENMYSTDRAAEPEEKTGLECTNGKSLSESSADDTTEPATQLKKCSSDNLTTPVQHFKNVVAIVDPPRAGLHPTVIKLLRTNSRLRRLVYISCNPESLVANAIELCTPSPDESEKGDNRNNRLWRKMSSATLARHRTKSMPNSEPFKPVKAMAVDLFPHSPHCELVMLLER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="97843" PGL_stop="99298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97843" e_stop="98116"/>
            <exon e_start="99014" e_stop="99298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="97843" e_stop="98116" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98117" i_stop="99013" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99014" e_stop="99298" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97843" stop="98116"/>
              <exon start="99014" stop="99298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cTOD-6-J17" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG : ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</gDNA_template>
            <first_frame> F  Y  Y  T  K  *  Q  T  F  W  F  S  I  F  F  F  K  K  K  L  P  L  H  L  F  F  L  K  K  I  F  C  Y  F  H  S  F  Q  D  F  F  K  F  *  V  N  K  V  Y  Y  *  *  I  V  E  Y  L  D  H  E  *  R  T  *  G  E  N  H  G  *  G  C  *  *  *  *  K  N  W  C  L  *  K  *  F  C  H  F  N  T  *   : D  R  E  V  I  H  D  Y  *  R  N  N  T  C  *  T  L  E  E  T  K  P  I  L  R  H  T  F  K  N  V  R  R  V  S  S  R  V  S  S  D  *  K  T  I  H  A  Y  T  E  E  G  E  F  P  F  D  T  Q  Y  L  *  F  K  N  N  Y  F  I  T  R  S  L  P  V  S  W  K  I  N  H  *  K  S  F  P  *  T  E  L  E  I  T  Y  E  </first_frame>
            <second_frame>  F  I  I  Q  S  N  K  H  S  G  S  L  F  F  F  L  K  K  N  S  H  C  T  F  F  F  *  K  K  S  F  V  I  F  T  L  F  K  I  F  S  N  F  K  *  T  K  C  I  I  S  R  L  W  N  I  W  I  M  S  E  E  H  K  E  K  I  M  A  E  V  V  D  N  D  E  K  I  G  V  C  E  N  D  F  V  I  S  T  P  K  :  I  E  R  S  S  T  I  T  E  E  T  T  H  A  K  H  W  R  K  P  N  L  S  L  D  I  P  S  R  T  L  D  A  S  P  Q  E  L  V  Q  I  K  R  P  F  T  P  T  P  K  R  V  N  F  L  L  T  P  S  T  C  D  S  R  I  T  T  S  S  P  G  P  S  P  C  R  G  K  S  T  I  R  N  L  F  P  K  L  S  L  K  S  R  M  N </second_frame>
            <third_frame>   L  L  Y  K  V  T  N  I  L  V  L  Y  F  F  F  *  K  K  T  P  I  A  P  F  F  F  K  K  N  L  L  L  F  S  L  F  S  R  F  F  Q  I  L  S  K  Q  S  V  L  L  V  D  C  G  I  F  G  S  *  V  K  N  I  R  R  K  S  W  L  R  L  L  I  M  M  K  K  L  V  F  V  K  M  I  L  S  F  Q  H  L  R :   S  R  G  H  P  R  L  L  K  K  Q  H  M  L  N  I  G  G  N  Q  T  Y  P  *  T  Y  L  Q  E  R  *  T  R  L  L  K  S  *  F  R  L  K  D  H  S  R  L  H  R  R  G  *  I  S  F  *  H  P  V  L  V  I  Q  E  *  L  L  H  H  Q  V  P  P  R  V  V  E  N  Q  P  L  E  I  F  S  L  N  *  A  *  N  H  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97979" stop="98116"/>
                    <exon start="99014" stop="99298"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCIISRLWNIWIMSEEHKEKIMAEVVDNDEKIGVCENDFVISTPKIERSSTITEETTHAKHWRKPNLSLDIPSRTLDASPQELVQIKRPFTPTPKRVNFLLTPSTCDSRITTSSPGPSPCRGKSTIRNLFPKLSLKSRMN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="103153" PGL_stop="106461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103153" e_stop="103313"/>
            <exon e_start="103926" e_stop="104163"/>
            <exon e_start="105967" e_stop="106052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.919"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.975"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="103153" e_stop="103313" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="103926" e_stop="104163" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="104164" i_stop="105966" i_length="1803"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="105967" e_stop="106052" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103153" stop="103313"/>
              <exon start="103926" stop="104163"/>
              <exon start="105967" stop="106052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cSTB-32-G8" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAACTACACTTTCTTGAGATATATATCTAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATG</gDNA_template>
            <first_frame> V  N  Y  T  F  L  R  Y  I  S  K  K  T  E  Q  S  C  S  R  A  A  *  *  I  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  F  C  *  G  S  E  S  Y  L  *  D  Q  R  T  *  A  Y  K  S  S  G  Y  L  C  W  R  C  S   </first_frame>
            <second_frame>  *  T  T  L  S  *  D  I  Y  L  K  K  Q  S  K  V  A  A  G  Q  L  D  E  L  Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  C :   S  A  E  A  V  N  R  I  Y  E  I  K  G  R  K  H  T  S  P  L  A  I  C  V  G  D  V  H  </second_frame>
            <third_frame>   K  L  H  F  L  E  I  Y  I  *  K  N  R  A  K  L  Q  Q  G  S  L  M  N  C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : V  L  L  R  Q  *  I  V  F  M  R  S  K  D  V  S  I  Q  V  L  W  L  F  V  L  A  M  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103172" stop="103313"/>
                    <exon start="103926" stop="104163"/>
                    <exon start="105967" stop="106051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIYLKKQSKVAAGQLDELQQTHKNSPNSAYFQLFHIPFSRCCFIFTHRVEKIGFLNLWARSRKGLSAVSVKKMGWSLENPDGDVETKKATVSPAAEDYGQEAIEAIRAGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRKHTSPLAICVGDVH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103224" e_stop="103313"/>
            <exon e_start="103926" e_stop="104163"/>
            <exon e_start="106077" e_stop="106142"/>
            <exon e_start="106384" e_stop="106461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="103224" e_stop="103313" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103314" i_stop="103925" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103926" e_stop="104163" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.720">
            <gDNA_intron_boundary i_start="104164" i_stop="106076" i_length="1913"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106077" e_stop="106142" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106143" i_stop="106383" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="106384" e_stop="106461" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103224" stop="103313"/>
              <exon start="103926" stop="104163"/>
              <exon start="106077" stop="106142"/>
              <exon start="106384" stop="106461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLER-17-M8" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</gDNA_template>
            <first_frame> C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  </first_frame>
            <second_frame>  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S </second_frame>
            <third_frame>   Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  * :   S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103226" stop="103313"/>
                    <exon start="103926" stop="106077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQTHKNSPNSAYFQLFHIPFSRCCFIFTHRVEKIGFLNLWARSRKGLSAVSVKKMGWSLENPDGDVETKKATVSPAAEDYGQEAIEAIRAGKVIAVPTDTLYGFACDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 19752 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2194 bytes was the average size of a spliced alignment
$ 12104 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2017 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:58:19
-->
