<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:51:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321802" ref_strand="+" ref_description="SGN-U321802        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | XS domain-containing protein, contains Pfam profile PF03468: XS domain | chr3:7956255-7957891 FORWARD | Aliases: None(evalue: 3e-19, score=92.8) genbank/nr: gi|45935149|gb|AAS79607.1| hypothetical protein [Ipomoea trifida] (evalue: 1e-74, score=282)">
      <seq>tcaaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaactaaagaaccattgacagacaaagtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgatttcgaaacgaagaaacgaagttctgtgaggagcaagaagcagatcaaggttattgcagttgcaccatgagaaggaaagaccaagttttagtttggcagggcaaaaatatatgttctgaatgatagctagacactttggctttgggttttgcttttgcttgcagctaattatattttgctatctaacttgatgaaagtagatacacccaaatatcatcatatatatatatatattattatatatatcatcatatcatatattattataaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="11116" stop="69100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="11549" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16162" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="442" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16578" g_stop="17124" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="989" r_length="547" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18365" g_stop="18383" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="990" r_stop="1008" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U321802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1008</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="11549"/>
          <exon e_start="15855" e_stop="16162"/>
          <exon e_start="16578" e_stop="17124"/>
          <exon e_start="18365" e_stop="18383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAGTTGGAAGATTTTAAGTTCAAAGTTAGCTTATTAAAATGCCCTTCACTTATTTATTAAATTAGAAAATGTCATTTACAAAATTTGAAAATTAAATAAATAATGATAGCAAAACAGTTATTTTTTAATCTTTAATTATTGATCCTTTGAGTTTCTGCAGTTAAACTCATTCCAGCCGAACTTAATGCGTTACACTAAATTCAATACTTAAGATTGAAGATAGATAGTCATAATCTCTTTGATTACAATTCAAAAACGTTTCATGTCATATTTTTCTTAGTTATTGTTGATCAATGTTCATATAATTTTCTCCACCTTTTCATATTCTTTACATTACAAAACTAGTTTTCTATCTCTCATTTTCCATTCATTCTCATTCTGCTAGAGATTATTTTTTTCCAGGTATATTTATCCTTTTTATATATGTATGTGTGGTTTAAGCCTCAATCTTAATATGTTTAGTGATATAGTGTTTGATATGAAAAGGGAATGATTATTTTTAAATTAGAACTATTTATCCCAATTTTTTAAATTAATCTTTTGATTCGTATAATTAATTTTCATCTTATGAAAACAAAGATCAAAAGATCTTCGAAAATGAAAATAATGTTCGTCAATTTTTTTATTTTCATTTAAAAAATACTATTGTATATTTTTTTAAAAAAAGAATGTAATTCATATAAGCACAAAAGAAAAAGATTTTTATATTTGTGATTTCAGCAATAACTAGAATTGCATTTATTTCTTCTTCATGTCTTTGCTACTTTCGTCAAAGACTTTTATATCTGTTTAATATTTTTTTCGAGTAGAAATTCATTGTAAACTACTTCAATAAATAAGTTGTTTGATCTGGAAAAACAATTAGCTATTCATAGACATATTCATACCATAAGAGATTAAATCATAACTAAAATTGTTAATTTCTGCATTTCTTATTATATAACTGAACTTTATAACGAAATATTTAAAATAAAATATTAAGGAACAAACGTACAACGCACATTTCAGATACTAGTATTATTATAAGTGGGAAGATTTTGAGTTTAAAGTTACATTACGAAACTGTCCTTCACCAAATTAAAATATTATAACACGTCAAATTATTTAGATATTAAATGCACATACAAAATTCATTAACTATTTTTTATCTTGAGAAAAATTGAAAAAGAAATTAAATGTGGAATTAGAGAGTTCATGTATCTATTTCATTTGTACTACATTATCAAAAATCATGGAATTTTAGAAGAAAAAAAAGATGAAAC</genome_strand>
        <mrna_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337456" ref_strand="+" ref_description="SGN-U337456        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | XS domain-containing protein, contains Pfam profile PF03468: XS domain | chr3:7956255-7957891 FORWARD | Aliases: None(evalue: 1e-05, score=47.8) genbank/nr: gi|45935149|gb|AAS79607.1| hypothetical protein [Ipomoea trifida] (evalue: 4e-71, score=262)">
      <seq>gaaggtattactactacagcaaaacctgaacctcctgagaactctaaggattttaagcagctggtccaaaatgccttcttcaggttcgtgaggcacttgaatgagactccagctaaaagaagaaaattcagtgagcaagctggtagtttaaagtgcctcgtgtgtggcagagattcagaagagtttgtagactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="13996" stop="16423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14296" g_stop="14465" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14466" i_stop="15854" i_length="1389">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16123" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="439" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U337456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14296" e_stop="14465"/>
          <exon e_start="15855" e_stop="16123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</genome_strand>
        <mrna_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330177" ref_strand="+" ref_description="SGN-U330177        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aaggagactagctgggctcccatgaggcgttttcattccatgctgcttcaacccatgaagtctgttggagtaaaaaaaaaaatcctgcacggatggaatgaaatgtgcctgaatacagtcgttatataaggattttttttatatatttggctctaagtagtgtggtttcaaggattactttattgatgcatggaaactccggagttggagaaaaagttcaattatgtaggtcggaagtcttattgttcaggaaattatataacccaaagcttagggcatttcctctcgatctggctagttagcaccatctcatataaggtgcttattatgaagagcaaatgtattttttgagttagtacatttgcccttatcttaaaatggtgcttacaaagaagatcaaataccttggttgttcaaacaaccatgactttgaggaaatgaaaagggaagatgttgaatgagttgctaaagaaacctcttctgctgttcccttaagtatttgacactaacctggatttgacacaccagatgttcaagtggtgtgattgcttgggaaaggggctgtagctgaagcagtttgtttgataattgggtttaaaatagagctataacagtttgcatatttcttattttaagtctgatgattagtagcgtctccacttaaccatagtcaatgttgatcctactgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="14320" stop="15613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14620" g_stop="15313" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U330177" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14620" e_stop="15313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTT-AAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</genome_strand>
        <mrna_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCT-TCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAAATAG-AGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322177" ref_strand="+" ref_description="SGN-U322177        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | G10 family protein, contains Pfam profile: PF01125 G10 protein | chr4:11267196-11268968 FORWARD | Aliases: F7J7.50, F7J7_50(evalue: 3e-76, score=281) genbank/nr: gi|15233517|ref|NP_193843.1| G10 - like protein [Arabidopsis thaliana] gi|7484968|pir||T04942 G10 protein homolog F7J7.50 - Arabidopsis thaliana gi|2911068|emb|CAA17530.1| G10-like protein [Arabidopsis thaliana] gi|7268908|emb|CAB79111.1| G10-like protein [Arabidopsis thaliana] gi|15294272|gb|AAK95313.1| AT4g21110/F7J7_50 [Arabidopsis thaliana] gi|23308281|gb|AAN18110.1| At4g21110/F7J7_50 [Arabidopsis thaliana](evalue: 2e-74, score=281)">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35737" stop="30538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35437" g_stop="35353" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30838" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="657" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="668"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U322177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35437" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332965" ref_strand="+" ref_description="SGN-U332965        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01171: PP-loop family | chr3:8963777-8966968 FORWARD | Aliases: None(evalue: 2e-51, score=184) genbank/nr: gi|42572523|ref|NP_974357.1| expressed protein [Arabidopsis thaliana] (evalue: 1e-49, score=184)">
      <seq>tcaatggcgcgaggcttcttgatttctacacaaaccaaaaattcttcacattttcttctaaactccatttctgaaacttcaagattaactaaattaccctattacccttcttcatcatctctccgtttctctctttcacctcctccttctccacctcggtttctgtgcagttgttgcagtcacttccaagaaaatggcacaattgacatgtcagtacactcagaggcatttgcaaagcgtatggctatggtgggtctcaaaccccatcatcgtattggttttgcagttataaaatatcaaatccaattctgggcgtttctggtggccctgatagcatggccctctgtgtcttaactgctgcatggaaaaccaataaccttggtaatgctgctcaaaagaatgagtttgttgacgggcttttagcagtggtagttgatcatggacttcgtgctgagagtaaagatgaagctcaccttgttcatcgtcgagtcacaagcatgggaatcaaatgtgagattgtttgctgtgaatggtcagaaggcaagccaaagcagggtcacttgcaagaagctgctcgccagaagaggtatgaaattctccaaagtgcttgcatccggcatcagattggtgtgttgatgactgcacaccatgcagatgaccaggcagaactattcattcttaggttatctcgcagtagtggcgtgcttggactcgctggaatggcatctgtttcagagctgttttttacatgtccagatttaagtgctgaagtgagtagcaatggacttttattggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="54817" stop="51863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54517" g_stop="54241" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54240" i_stop="53261" i_length="980">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53260" g_stop="53232" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="306" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53231" i_stop="53124" i_length="108">
            <donor d_prob="0.064" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53123" g_stop="52929" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="501" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52928" i_stop="52836" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52835" g_stop="52751" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="586" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52750" i_stop="52591" i_length="160">
            <donor d_prob="0.405" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52590" g_stop="52515" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="662" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52514" i_stop="52300" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52299" g_stop="52163" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="799" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U332965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54517" e_stop="54241"/>
          <exon e_start="53260" e_stop="53232"/>
          <exon e_start="53123" e_stop="52929"/>
          <exon e_start="52835" e_stop="52751"/>
          <exon e_start="52590" e_stop="52515"/>
          <exon e_start="52299" e_stop="52163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTGGTAAGTTTTACCCCTCCATTGTATTTTTATTTTTATTTTACTTTGTGGATACAAAGAAAGAAGAGCTGAAAGTGAGAAAAAGATTGCAGTTTTATAGTATAGTCGTTTATTCTTTTTGTTATAGTGAAATGCTGATACTTGCATCTTCATGGAGGATTCAATTTTACCAGGTCCATGTTGGAGATATTGTATAAGATGAAAAAATTGGTTTAGATATGTGTTACAGGAGTTGAGGGTCTATTGGAAACAGTCCTTTTAACTTCATTACTAAGTCTCTGTACGGACCACCCTTCTCAGACTCCACTTGTGGGAGGGATTACACCGGGAATGCTGTTGTTGAAAATATTTGTTTAGAAAAAGACTTGGTGTTATAATGAAATGTTGTTATAGATGATGATGTGGAGGTCTCAGTGTACCTTTTTTCATTGGTTTGAAAAGTGGTTTGCATGAGTTAAAAATCTTAATATCATGAGAAGCTATTTTACATGTTTCATGGGATGATTAGTACTACCCCATTCCTAATCAGAAGTTTCTGATTTGAGTTTGGGGAATGGAGCTGTGTTTAACAGGGAGCTTTTTAGCCCAAGTGGATAAAAGATTGCAACTTTGTATAGTACCCTTTACCGTCCATTTGTATATTGGTTTGCTTTACTTAAAAATCTCAATATCATGAGAAAATGTTTCATGTGTTCCATGGGATGATAGGTACCCATCCATCTTTAGCCAGAGGCTTTAGGTTTGATATTTGTTAATGGAGTCCCCTTAAAGAGGGATCTCTTTATCCGAAAGTGGATAAAAGGTAGCAGCTTTATAGTGCCTTTTCGTCCATTTTGTTATTGATTTGCCTGACTTAAAAATCTGAAAAGCATGAGTTTTTGTTTTATGGATTTTCAATTTTCTTGTTATGTAATATAGCTTACAAAGAATTGCCCAAGGAAGAAAATTACAGCTCATGATTTATTTTTCTCTTTGATTGGTAGGTTTTGCAGTTATAAAATATCAAATCCAAGTAAATTTTCATGTTTGGCTATTCTCTCTTTAACGACTATTAGATTAAAATTTCAAATTCCAAGTGTGGTTTTGTGGTGACCATGATTCTTCTTGACCTTTTTTGTAGTTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGGGTATATATGTTCCTTTTAACTTCTTCTTTATCATGAATGTAGCAACATTGCTTAATACCTTTTTAATAGAGATATAATGTAGGCCTTGTATAGGAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAGGTCATTACCAGAGTTTCAAATCATCTTCAGTGAAATGCTATTTCAGAGCCTTGTCATATCTGGTTATGCTGGTTTTTTGACTGACTATGTTATACATTCATCCTGATGTTAATATGTCGTCATTATTGTGAGTAAATAAGTTGTCCCTCGTCTTGTTCAGGTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAGGTATTAATAGCATTTACTCTCTGGATTTTTGTATTTTGTCTCTAAAAACTTAGCACTTATAGATGGCAATCTGTTTAGTTTTGTCAATACATTAAAAAGAGCTAATGGTATTTGAATACAATTGATGTTGCGCTCATGCAAATGTAAGTTGAACATTATTGCTTTTGACAACATTGTTGATAGTTTTAGCAATTGCTAATCGGATTACTCTACAGGCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</genome_strand>
        <mrna_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCAGTTATAAAATATCAAATCCAA............................................................................................................TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG.............................................................................................GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG................................................................................................................................................................GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG.......................................................................................................................................................................................................................GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329682" ref_strand="+" ref_description="SGN-U329682        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant neutral invertase | chr5:7474813-7477922 REVERSE | Aliases: MQJ16.5, MQJ16_5(evalue: 4e-38, score=154) genbank/nr: gi|45935151|gb|AAS79609.1| putative neutral invertase [Ipomoea trifida] (evalue: 1e-47, score=191)">
      <seq>tgtcattcacagaaatgttctaacatagagtagaatcgaacatgtaaagagatacattgacagcagaaaagatgagttgattattgtaaacatgaactgttttcagctgactgtggcatgcataaaaatgaagaggcctgaaatagctgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaacttctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcatactgtgttgttacctaaagcttttgtatagttactatatatctgcgcgatatacatactagtgttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="58252" stop="59478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58552" g_stop="59186" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U329682" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58552" e_stop="59186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATTCTGTAG</genome_strand>
        <mrna_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330019" ref_strand="+" ref_description="SGN-U330019        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to protein tyrosine phosphatase-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72543.1); contains InterPro domain Low molecular weight phosphotyrosine protein phosphatase (InterPro:IPR000106) | chr3:16204816-16206820 FORWARD | Aliases: T18B22.20(evalue: 4e-75, score=278) genbank/nr: Low(evalue: 9e-74, score=279)">
      <seq>gttgcattaccagaaccaaccaccattgaagttttgagtgatgaggtccttactctttagtacagtgacaattctagccccttcaaaattaccaaactgccatcattctcactatgctgctcctcactctctcaaattcccatttctcacttctcttcttcctactaaatccccatttcttcttaaagaaagctataaaagtgtaaaaatcaaagctttaatggaatcaggaatggactcaagtacaaaacctttttctgttctctttgtgtgtcttggaaacatatgcagaagtccagctgctgaaggtgtttttacagatttggttaagaaaagggggcttgattcaaagtttaagattgattctgctggtactattaattatcatgagggaaatgaagctgatccaagaatgagggctgctgctaaaaggcgtggaattgcgataacgtctatatctaggccaattagggcttctgatttcaaagattttgatctcattcttgctatggatgagcaaaacaaatctgatattcttggggctctggagaggtggatccatagagagccattgccagctgatgcagcggaaaaggtccgcttgatgtgttcctactgtaagaagcatcaggaaactgaagttccagacccttactatggtggagctcaaggttttgagaaggtactagatatgcttgaagatgcttgtgattcactgttggaaagcattgtgacagaacaaaatttaggttcatagatgtactttaatcaccagtattcttactgccaataaggcaattggttattcaaagcatataccatgtactctactgctcattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="62488" stop="59314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62188" g_stop="61798" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61797" i_stop="61410" i_length="388">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61409" g_stop="61274" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="527" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61273" i_stop="60941" i_length="333">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60940" g_stop="60846" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="618" r_length="91" r_score="0.842"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60845" i_stop="60034" i_length="812">
            <donor d_prob="0.947" d_score="0.74"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60033" g_stop="59960" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="682" r_length="64" r_score="0.568"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59959" i_stop="59775" i_length="185">
            <donor d_prob="0.769" d_score="0.58"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59774" g_stop="59614" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="843" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U330019" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62188" e_stop="61798"/>
          <exon e_start="61409" e_stop="61274"/>
          <exon e_start="60940" e_stop="60846"/>
          <exon e_start="60033" e_stop="59960"/>
          <exon e_start="59774" e_stop="59614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAGGTATTTTCAATTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGGTCTGTAAAATTTGTAACTTTTTGATTGATTCTGCTGGTAGCATTGATTATCATGAGGTATTTCCATTTGGGGGTCTGTAAAATTTGTATTCAAGATTGGTGCTGTTGGTATTATTGATTATCATGAGGTATTCTCACTTGGGGGTCTGTAAAATTTGTTAGTTATGATTGATTCTGCTGGTATTTTTAATTATCATGATGTATTTTCAATGATAATTAAATGTAATTTTTTATGGTTTTGAATATTTCTTGGAGTTGATCATGTTATAATGTTGCTTTTGTTTTTGTTTGTCTTAAAGGGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAATGTGGGTTATTGCAAAATCCCGTGTCATATTCTGGGTTATGTTTTTTTAGCTTTTCTTTTTATTAGGCCCATTTCATTTTTTATAACCGTGGTGTCGTGTCAGTTTGTGCATACCCGGACTAATTCCATAGGTACCTGTTACCTTCCACCAACACATATATCTGGTAACTCTGCTCACCAAGTTTTGCTTCTACTGAAATTTGAACTAGAGACCTCATGGTTAAGGGTCTATCTTGATTTTCCTACTTTATGTTCATCTCCACATCTTCTTGGTAGAATCATGATGGTTGGAACATATGTACCGTATCAAGAACTGATTTGTTTTATAACACAGCTGATATTCTTGGGGCTCTGGAGAGGTGGATGCATACAGAGCCATTGCCAGCTGATGCAGCGGAAAAAGTTGTTGAATTAATAAGTCTTATACTGGTACTGGTTATCAACTGCATTTCTTACGTCTGTTATCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCATGCCTGCAGGTCTGAAATACTAGTGCCATTTGAAAAGTGCACACAATAGTCACCTTACTCATGCTTACATGCAGTAAAGCCCTACTCAATAGAAAATTATCCAGCTTCTCACCTCATATTTCCTTCCCTCTGGCTGCACGGAGAGAAAAAGGAATGGTGTCTTGAGCTATAGCCCTGATAGCTAATTCTCCCTTCACTTCTTACCTTCTCGTTTAACCATTCTTCTAACTCCCTAAGACCCTAACAGCCTAACCCTTTCCAGTCCCTCAATCTCCCTGAAGTCATTAATTAACTCTGTTATCCTGACCTCAACCCTCCCCAAGTCCTACATATGAATCCTGATGCTTGTCTTTCATCAGCCATAGTTATAGTCTTATCGGTATCTTCAAGAAAGTACATAGGACAAAAATAGTCCTAAAATTTAGGCTATCGACAAGGATCGTTTGGAATATTTGGTTTGGAAAAATCCAAGGAGGTATTTTGGAGAACTTTTACCAAGTCCTTGTATGTTGTAAGAGGACTTCATATCTAGAAGAAAATTTTATAATTTGATGTTTCATTAAGTGCATGGAAATTTGGATACCTTTGTAGTTTCCCAAGGTCTTCTCAATAAGCCAAGCACATATTATCTTTTAATTCCTGTTGAATGATTTTCACAGAAAATGCTAGAAAAGCCCCATCTTAAAAAAGCAAAAGCTCTTTACAATGAGAAGAGTTTCTGCAAGAGGTCATTTCTGAAGGTCTTAAAAGACCTTATTAATTTACTAAGATGGTGTGTTGCTGCTACAATATATATATATTATGTGTAAACACTGTTCATTTGGATGAGTCAGTTCGCTTTTGTTTGCTGTTAAACTTGCAGTTGATGCTTACTGCCAGTGCCAGCAACATGCATCTAATTCTCAACTCTACATCTTGCTCACAGGTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</genome_strand>
        <mrna_strand>GTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG....................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT.............................................................................................................................................................................................................................................................................................................................................CTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGG-AAAAG--GTCCGCTTGATGTGT-TCCTACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATG-GTGGAG---CT-C-A-AGGT--TTTGAGAAG.........................................................................................................................................................................................GTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342324" ref_strand="+" ref_description="SGN-U342324        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G36350.1 | Symbol: None | protein kinase, putative, similar to protein kinase KIPK (KCBP-interacting protein kinase) (Arabidopsis thaliana) gi:7716430:gb:AAF68383 | chr2:15245195-15249002 FORWARD | Aliases: F2H17.4, F2H17_4 (evalue: 2e-36, score=147) genbank/nr: protein(evalue: 3e-63, score=243)">
      <seq>gactttaagccagagaacgtactagtgagagaagacggtcatatcatgctgtctgattttgatttatctcttaggtgtgctgttaatcctaccttggtgaaatcgtcttctcccatcattgagcttccaaaaaagtctagtccgtgctcagctagctgcatagatcccttctgcctacatccgtcgtggcaagtatcttgctttggccccaggtttctatctacagaagcaaagacacgtaaaataaaggctgacctagctgcacaagtctcacctttaacacagcttgttgtggagccaaccaacgctcgatccaactcatttgtaggaacccacgaatacttagctccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="64422" stop="63469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64122" g_stop="63769" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U342324" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64122" e_stop="63769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTAAAACCTGAGAATGTGTTGGTCCGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAGTATCTAGCTCCGGAG</genome_strand>
        <mrna_strand>GACTTTAAGCCAGAGAACGTACTAGTGAGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAATACTTAGCTCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345838" ref_strand="+" ref_description="SGN-U345838        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G44610.1 | Symbol: None | protein kinase family protein, similar to viroid symptom modulation protein (protein kinase)(Lycopersicon esculentum) gi:7672777:gb:AAF66637; contains protein kinase domain, Pfam:PF00069 | chr3:16199116-16203162 REVERSE | Aliases: T18B22.10 (evalue: 2e-98, score=356) genbank/nr: protein(evalue: 1e-96, score=356)">
      <seq>caaaagaaaaaaactcgagccaaaaatggagccatggctcgacgacttagtcgacgatcttcaaagcatcagcttcaactctactaccactaccgcaactgatattaaccggtcgactagctccggctccgaagccacatggacggctacggcttcttctatctcatccagctctcttcaccaccatatcactaagccacgcgccgctactccttccggtgatccttactgggacgccattacacggggtatttcaacttctacttcgtcggcaatttctctaactgatctccgatttctccatcgattaggatccggcgatataggttccgtttttctcgcggaaatcaaagctgctccggtaacggagatttcgaaatcgacggcggtatcggcgtactttgcagcgaaagttatggataagaaggaacttgcgagccgtaataaggaaggaagagcgaggactgaacgggaaatacttgaaatgttagatcatcctttccttcccacgctttatgcttctattgattcaccgaaatggtcgtgtttattaacggagttttgccccggcggtgatttacacgtactccggcaacgtcaaccggcgaaacgcttccctgaatccgctgtcaggttctatgtgtcggaggtggtggtggcgttggagtacattcacatgatgggaatagtttaccgcgacttgaaacctgaaaatgttttggtccgatcagatggtcatatcatgctcacggactttgatctctcgttaaaatgtgacacctctacatcaacaccagctcaagtgatttcaagccaaaatacacctaatggtggacctcaacaaaatgagtacaaaattgaaccaccaaagttcacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="74268" stop="79599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74568" g_stop="75201" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75202" i_stop="79052" i_length="3851">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79053" g_stop="79299" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="880" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U345838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74568" e_stop="75201"/>
          <exon e_start="79053" e_stop="79299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAGGTACATTATTCTCTACTCTCATAGTACATATGAACTATACACATCAACTTCAATCAATACTAATTTTGTTATTCGTGTTATCAAATTAGCTACAAAGTTCATAACTAATTTACTTTTTTTGATATTGATGTTGATAGTGACAAAACTAAACATTTTCACTAACCAATTCAAAAAAATACTACTCTCTCTTTCCATTTTATGTCATACTTTTTTCTTTAATCGAGTATTTGCGTATGAAATTTTTAAATTTTTTAAAATAAGCACAATAATTGATTAATCAAAATGTATAAAAAGACTTAAGTCTACGAATAAATTTATTTGAATCTCAAAAATGCAAAAAAGCAATACATGAAAAATGAAACAAAAGAAATAGTTATGTATAAGTTTTGATTAAATTCGAATGAATTTTTCGATCCTACCTTTATCGTTTTGCTCCTGTGGGGTCCACCAGGTGGTGTTGGAGCTGATAATTTGTCAGTATTATGGTTCCATCTAAGTTGGTCAGTGTCATTTTCTTCTTCTTTTCACTTTGGCCACACTGGATCTATGGTGGACTTGTGCACACTGGATCATTGATTAAAATGGTAATTAATTAGGAAAGATAATTAGAAAATTATGATTAGTCTAATTTATTATTATAAGTTGTGATCCACACGTGCTTAGTATTATGACTTCTATACTTAAAAGTCAAAGTTTAACTTACGCGCCATATGAAATTAAGTTGTTCGAATCTTTAAAAATGTTATTATTTTTATGATAAATTATAAAAAAAAAAATGTGAATTTGAATTAATCAATTTTAAAAGCATAATGATTTTTTAGGAAAAAAGAACTTGTGTGTTATAATTGTTTTGGGATTTATTTATTATGGTTTAGTTGGAGTGATAGAGCTTTTAATGATCATGATAGGAGTGGGCTATATTACTATTTACTAATCAATCAATACATATTTCATTAATTTTTTTAATAGTTGACTTGATGAGGTGCATGTGAAAAAGGAAGGAGCTAATCACCTCTCTAGTCCTTTTTTTAAAAGAATATATTTCATACTAAAATTTTATAATATCAAAGTGAGTTATAAATATGCGATGAGATAAATAAGAATATTTATAAATAAAATATCTCGCCTTTTATATGGATACCATATAGTATTCTCATTATTTTATTTTAATATAAATAGTGAAATAAAATGATTTTGAAATTAACCAACACTTCAAATCAAATTTTTAAATTTGAAAAATATTAATTGATGATATATTTCACTACAAGTATATTTGATTTGGAGTATTTTTTTTTCTGTTTTAAACTCTACCTTCACTCTGTTACTAATATGTTTTTAGAGACTTTCACGAAATAGAGATAAAATCTTTATATACTTTACTTTCTTATCATTTATCAATTAAATTTGTGATTATTATTTGTTATCACACTCGAAAAGAATGAACATGGAGTCACTAAAGTTTTGAGTTGTGTAGATTTTAGGTTTTTTGATTGATGTTTATGTGTTTATATTGAGATTTAATTAAATTTTAGATTATAATAGTAATAATTATATTTTTCTAAAAAAAAAGGTTTTTAACAAAAATAATTATTTTCAATTAAAGATCACTCTAGACTAATCTTCGTTGATATTATGTGGAATCGAATTCGAAAAGATTTTTACCTTCTTTCTTAAGAAAGATAGTCTTGGAAGATTCTATATAAATTTATTAATGAAATCAAGATAGTTAATTCTTCAAATATTTAAATTCTATTTTTGGTAATTGAGTCCAAAGTTAATTTGTCAAACAAACTTTTTAAAATGTAATACTTTTCCAGTTATCATTCCCAAAATTAAGGGGAATAGTCTTGCCTTGTAACTTTTCCTTAATATAAGGAATTTGGAATTTTAATTTTGAAAACTATTTTTTTCTTATTAATATATATTCTTTACCAAAGTGGTCCCTTATTATATTGCAATAAATTGATCTATATGGGAGGCCCCTGTATATATATATAAACTATTCCTATAATTGACAAATATGCCATGTTGGTACACAAGTTATACAGATAATCACAACCTATCTAGACCAAAAATAATAATATGGCTAGAAGGAAACTAGTAGAAATGATTCAAATTTAATTTCTCTAGCTTTTACTTTAGAAGTAGTTTTTGATTGAGCAGAAAATCCTGTTCTCAAGATTATTACTTTTTTTGACTTGACATTTCACTGCCTACATTTGGATTTTTATGATTTGGATGGACCTCTCTTTTGATTATACGATCCCTTGTGACACATGAAACAAAAAAAAAGAAAAATCAGATAATTTTTTATATTTTTATAAATCATTATGTTTAGACAGTTTATACGTATTTTAATTAATTATATAGAATATTTGTTACCTTATATCGATTAGATAGTTAGTAAGTAGTCGAGTAATTTCTCCCTTGTCAGTGGTAGAGCATGGTCATAGTCTGGAGTAACATCATCACTACAGTTCTTCCTTTTCTTTTTTTTTTGGTTATCAATATGATTTCTACTCTTTTTCTTAAACACAATTTTTCTTAAAGTTGAGGGCTTCTGAGAAATAATCTTTCTACCTCCACAAAGGTTAGGATAAGGGCAACGTACTTCCCATCCTCCCAAGACCCACTTATGAGATCATAGTATATTATACCAAATAACTTTGTCGGTCAAACTTGTACTAACCAAAAGATCAACAATTCACACCTAAAATAGTAGACGTAAAATAATGTCTCATAATAATTTAATTCTTTGTCAAAATGCAATACTACCTACTGAACTAATCAGAATTATTGGGGGTACATAGTCTTTCCCTTCTTGTTTCCCATGTTCATTGTTTTGCCTACAAAGTACAAGGATATATTTTGCATATAAAGATATGCCCTGTTTGTGTAGGCCATACTTTTCAACTAATATGTGGGTGAGTTTATTCTAATATACTTGCATTATCTTTTCAATTTGCTCATTGTCTACCTAGATAGTCGATATCCTATCCTAGTGGGAGATAACATATACCTCGTGGAATTAGTTGATGTTTGTGCTCATGTTAATTCGGACAGCTGTTATTATACTTGATTCATTTACTTTGTTCGTCTTCCTATTTTGTTATCGTTATTTTCCTTGTGTCTATCAAAAACAACCCTCCCTATCCCATAAAGGTAAGGTTAAGGTATGCGAAGAAAACCTTTCTCAGAGATAGCACTTGTGAAAATCCTTGGTATTTTCTTCTTTTATGGATATCCCACAAACTTTTTTTTTTCTCATTTTAATTAATCTAGTACAAAATGTAATGATGTTGCACTTGTGGAAAGCAACCAAACGAAGAGCACAAAAAGGAGAAGAGGACAGTAAAGTTGCGCCATGATATAGGGACAATGTTTCAAGGACCTACTTTTTTAATCTTGCTACGTTGCATGGGGAAACAATTAGGGGGGCCAGCATATATTCCACAAACTAAAGTATAGAGTAGTTTTGCTATCTTTAAAGAAGCATATTGGTCCCCCTCCCCATATGATAAGAGTTGAAACAAACTTCTTTGTGCAGCCGTGAGGTCTTGGATCCTCCTTGGTTTCGAACCTTAGCATGAAAAAAATCTTGCTCGGGAGCACTTTCCTATTTAATCATTCTCGTGTGTCTCAGAATCAATACAAATATCGAATACTAGATAAAAAAGTGGGCGTTAAAAAGTTTTGAGTCATAAAGTTCTTGCTTCATTTACTATGGTTCTTTTCTTTGTTCCCTCAGATGCTTCCATTAGTCTTATCTTCTTGTGTTTAACTTTTTACATTTCGAATCTCCTTAGTGAAAATCCTCATGTTACCACTTGCTAATCTCATGGTATCTACAGGTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</genome_strand>
        <mrna_strand>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTC-AACCGGCGAAACGCTTCCCTGAATCCGCTGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322337" ref_strand="+" ref_description="SGN-U322337        Tomato 200607 #1 [8 ESTs aligned]">
      <seq>gatcccccgggctgcaggtcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatattttccacataaataattatcatggtatttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79496" stop="97172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79800" g_stop="80477" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="700" r_length="678" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80478" i_stop="83321" i_length="2844">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.233" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83322" g_stop="83352" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="731" r_length="31" r_score="0.613"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83353" i_stop="83929" i_length="577">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.158" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83930" g_stop="83945" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="747" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U322337" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79800" e_stop="80477"/>
          <exon e_start="83322" e_stop="83352"/>
          <exon e_start="83930" e_stop="83945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTAGACCTTTTTTCCGTAGATTATTCTGATTGAATTTCAAATATCATCCTACACACTCAAGAGTGTTGGACGTGTTCTCTACAATAACATCCGCGATGCATCTATTTCATGTTTGTGTTGTTATTTTTTGTAGACATAATACATAAATAACTTGATTTCAGCGGATAACTATGTTCTTCAATTTTGATTACGCACAAGTAGGTATTTAAACTTCTATAAAATTGAACAAGTATACACACGTCCTTCCTGGTATAATCCACGTAGGACAAATGAGTCAATTTGCTCAATTTTAAAGGAAGTTTTAAGTGCCTACTTGTGCAAACCTAAAGTTAAAAATCATAGTTGTCAACTAACGGTAAGTTAAAGACCATGGTTCTGTATTATGCATTCATTTTATGTTGTTGGTGTTCATGTTAGTTTACGAGCACTATTATACCGCGATAGATCGAAAGAAATCACTTACTATTATTTTTTAGACTGTGGCAATTATTTTGGTAGGATTAGTTTTGTTTATTGATGGTGGTTGATGTGCTTTCTTGATTTGATTTGGTAAATTGGTTTTGTCTGATGATTATGATAATTATATCGACTGTCATGAAGAAAGAGTTAATTATGGAGAAAAGTGTAATTATAATACTTAATAAAGTAAGGAGATAAAGCTCCTTTTAGACTAATTATGATCATTGTAGAATTCATTAGAGAACAAACAAAACATAATTTTGTAGCTTCTAATTGGAATCTTGAGCAATGTGATTAGAAATTATTATGGCCAATAACTTTTGATAGCTTCTATAGGAATTGATTTTTTCGTTTCGAAACAAATATCGTTTTAACTTATTTTATATTTGCTGAGAAAATTAATATGGTATGATATTTCCATTAAATATAGTTAAAGTCGATTATTATTTTTTGTTTGAAATTTTTAAAACAATTTTAATTTTAATTTTTTTTTTACTATTACTAACTTGATATTTATTTTGAATCGAATCGAATAATTAGAATTTAAAAATGACCTACTACAATTAACCAAGTTGGGTCCATGCATAGGGGTTATTGTTTCCTACAAAAGGAATAAGACAAAATTATTGGAGAAGGGGATGAGTTTTCAACCACTCTCAAATAGTTTCCGCACCAAATTCTTTCTTAGTAGGATAAGTATCGATAATTTTATCCATCAAAATTTAAAAGATACAAAAAAGTTATTAAATGTTTTTTTATTACGATATTTGGTTATCAAATATTTTTATTTTTACTATAATAATAATGTTTGAATCAACTTATATATATTTCAATTGTTTTTGAGAAATATTCGAATTCATTCAGTATAATTATTTTCTCTTTTTTTATAGAAAAATGTCCTTTTCATATTTGATTATTTTTCAGAATTTAGTTTTGACATATCTTTCACACGATACCATCTTATATAGTCACTAAAAGAGTTTCGTTAAAGAGGAGATTATACTCTCAATAATTTTATGTATTTTATATTAGTTTTCTCTATGTAGATTAATTAATCAAATCTTATTAAAGATTATGTTTCTTTTCGTATATTTTCTTTGTTTACGATTTATTATCGTTCAAGACTTATTTTGTTAGTTTTCACACTATGTTATGTCATTGTGATCCCAATGCCGACTACCTTCCATCAATATAGTAATATAGAGAATTGAATAGCTTTATTCATCTAAATTTGAACAATAAAGCGAAATCACCTAATACTTCTGTTTGATTTGATATTAAGTTAAAAGTAATTGAATATAGAGATTGGTTTTAATATTTTAATATCTAAAATTTGATTTTCAACAAACGAATTGATTCTTGTTTGAATTAGCTATGAAAATTTCTCAAACAATTTTTTTGGGATAAATGACAGAAATCTCACCTTTAAACTCTCTTATTATCATTATCTCCTATTAGTTTTACAAATTTCCAAAATCCCTTATTTTCACACATCAAATTAATGTATCTGCGCATCAAATTAACGTATCTCACGCATCAAATTAATGTATCATGTATAAAATGTACATCAAATTAGTGTATCATATATATAAGATGTATTATATCTTACTTAATAATTAATGTATCTCGTGCATCAGATTAATATATCAGCGCTTATATTATTGTATCATTTGAGGGAATTTTGTCATTATAAACTTATAAGGGACAAATAGTAATCTTGTCGTAAAAGTATGTGATTTCTGTCTTTTGCCCTTTTGTTATTATTATTTTGGCCTATTGTACGTTTTTGGATCTTATATGTCATATCAACAGTTATATACCTTAAAAATTTAAAATAAGAAAAAGAAAATCTTATCGAAACTTTTAATTAACATTATCGTATTTTTCTTTCTATTTTTTTTCTCAAACATGATCTAATTTTATCGTCATTTTCCTGAGATATATTTGTATTTCTATTATATAGAAGAGTGAAGTAGTAGGACAACAATGATAATTTTGCAATTTTAAACATTATTATGAGCAAAGTTCTAAATTTATGATTTTATAATTAATTGTCAAAATAGTTTTCTACAAGAATCCAATTTTTCTTTTCAAGAGTCACAAAAAGTTTTGTTTCATGTGTGGCCCACAAACTCATTTTATTTTATTTTTAAAATCAATTTGTATTTATTTGATTATAATAGTAATGTGAAAAATATTTTTACTTTATACTCGTGACAATTAAAATCGTTCATATATAATTATTACTACTACAACATATTCAGTGTAATCCTACAATCTTTCATGTATGTAATTTCTTTTTTAATTATATATAATGTTTTTAAACATAAGTATTCATATAGTTTAATTTAACTTATGTTATCTCCAAAATAATATTTATTTATCTTTAGAAATTGTGACTTAAATAAGAAAACAAAAATAGCTCAATTCTAAATAGATAAAAAAAAAATAGAGAGTTGATAATGTAAGAATTGATAAATAATGACCGCATAACTGTAGTTTAAGAAAATACATAACCAATTAACGGGATAAATTTTGAAAAGTATAAATATATGGGATCAAAAATTAATTTGTCATAGAATTTTATATCATATACTTGGATACTTCCACAAAAATTGTACTAGGCCCTTCATAACTCTAGAGATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTGCTGCTGCAGGTCTCTAAAACAAACCATAGATGTTCATATGACTATAAAGCTTCTTACTAAAAATAATATGTATATTATAAAGTCAAAATGTTATTAATATATTAATACATCATTCTTTTGAAATTGACTTAAGAGAAAAATATGTCACATTAATTAAGTTAAAATAACATAAATTTTCACAGTTTTAAGAGTTAATTACATTATATCTCTATTTATTTTTTCAAATTACAAAAAAATTCTTAGAATTAAAAAAAAAAAA</genome_strand>
        <mrna_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320246" ref_strand="+" ref_description="SGN-U320246        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT3G44600.1 | Symbol: None | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, similar to SP:P87051 Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8) (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains Pfam profiles PF00160: peptidyl-prolyl cis-trans isomerase cyclophilin-type, PF00400: WD domain G-beta repeat | chr3:16175922-16180249 REVERSE | Aliases: F14L2.150 (evalue: 0, score=1004) genbank/nr: gi|22331588|ref|NP_190046.2| expressed protein [Arabidopsis thaliana] gi|17065154|gb|AAL32731.1| putative protein [Arabidopsis thaliana] gi|30725438|gb|AAP37741.1| At3g44600 [Arabidopsis thaliana](evalue: 0, score=1004)">
      <seq>tcactgagaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcagatcagaatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcgtgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggtatataaacaaagggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggggcatatatatgatgcaagagctggaacaaatgatcctataatatctaaagaggtacaggtgtgccccatcaaagtcatgaaatacaatcatgtctttgatactgtgatatcagcagatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctctcaattcttcataacaactgttgccactccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="86916" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87216" g_stop="87443" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88817" g_stop="88902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89160" g_stop="89399" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="643" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89400" i_stop="89537" i_length="138">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.777" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89538" g_stop="89659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="765" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90158" g_stop="90233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="841" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90424" g_stop="90531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="949" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1126" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90961" g_stop="91178" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1344" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="91650" g_stop="91782" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1477" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="92667" g_stop="92890" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1478" r_stop="1701" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="92891" i_stop="93944" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93945" g_stop="94098" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1702" r_stop="1855" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="94354" g_stop="94358" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1856" r_stop="1860" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U320246" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87216" e_stop="87443"/>
          <exon e_start="88817" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89399"/>
          <exon e_start="89538" e_stop="89659"/>
          <exon e_start="90158" e_stop="90233"/>
          <exon e_start="90424" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91178"/>
          <exon e_start="91650" e_stop="91782"/>
          <exon e_start="92667" e_stop="92890"/>
          <exon e_start="93945" e_stop="94098"/>
          <exon e_start="94354" e_stop="94358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAGGTATTCTCATTGACTTGACTCAATACTAAGGTTGATATGTCGTTTGTGCAGTTCATTGGTCTTCTTTGTTATGTTAATATGAAGTTTCTACCAGCAGTCACACTAATCAAATTGCTAACTTAGTTTCCTTGTAATCAGGTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTT</genome_strand>
        <mrna_strand>TCACTGAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAAGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGGGCATATATATGATGCAAGAGCTGGAACAAATGATCCTATAATATCTAAAGAG..........................................................................................................................................GTACAGGTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324805" ref_strand="+" ref_description="SGN-U324805        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT3G44600.1 | Symbol: None | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, similar to SP:P87051 Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8) (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains Pfam profiles PF00160: peptidyl-prolyl cis-trans isomerase cyclophilin-type, PF00400: WD domain G-beta repeat | chr3:16175922-16180249 REVERSE | Aliases: F14L2.150 (evalue: 4e-21, score=98.2) genbank/nr: gi|22331588|ref|NP_190046.2| expressed protein [Arabidopsis thaliana] gi|17065154|gb|AAL32731.1| putative protein [Arabidopsis thaliana] gi|30725438|gb|AAP37741.1| At3g44600 [Arabidopsis thaliana](evalue: 3e-19, score=98.2)">
      <seq>actccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtctttagagaaagtgaagaccgacaaaggtgacaagccataccaggatgtaaaaatattgaatgtgactgttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttcacttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="93733" stop="95318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94033" g_stop="94098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94354" g_stop="95019" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="732" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-U324805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94033" e_stop="94098"/>
          <exon e_start="94354" e_stop="95019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAC</genome_strand>
        <mrna_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334525" ref_strand="+" ref_description="SGN-U334525        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 2e-13, score=79.3)">
      <seq>cacaaaataagaaaatgaagtatcgcttcttacttgtagctggttgggtggcaacacctcccatctgctgcaattgaaaaatccttgctttgtggagctgaagctgatgatgataggattgaactcctcttgtccaagtaagggcaaggacatcactgagctgattgctgctggcagggagaagttgngcttagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97261" stop="94924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97075" g_stop="97070" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="92" r_length="86" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="316" r_length="224" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95224" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="515" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U334525" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97075" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTG-GCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</genome_strand>
        <mrna_strand>CACAAA..............................................................................................................ATAAGAAAATGAA-GT-ATCGCTTCTTACTTG-TAGCTG-GTTGGGTGGCAACACCT-CCCATCTGCTGCA-A-TTGAA-AA-ATCCTTGCTT-TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGT-CCAAGT-AAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGNGCTT-AGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334526" ref_strand="+" ref_description="SGN-U334526        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S acidic ribosomal protein P2 (RPP2B) | chr2:11823868-11824944 FORWARD | Aliases: None(evalue: 2e-18, score=89.7) genbank/nr: gi|76160941|gb|ABA40434.1| 60s acidic ribosomal protein-like protein [Solanum tuberosum] (evalue: 9e-25, score=117)">
      <seq>ccctacgccattaaagcttacaaatctcacacaaattttgtgtgtatttgtagataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctgggggcggggggggaggtgcaggagctgtatctggtggggggggggcgtggacacccgctggcgaggggaagaaagagggaaagaagggggaagaaaaaggaggatctggtggagacctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97404" stop="95227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97104" g_stop="97070" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96978" i_length="92">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.246" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96864" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="376" r_length="227" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95415" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="384" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-U334526" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97104" e_stop="97070"/>
          <exon e_start="96977" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGG</genome_strand>
        <mrna_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA............................................................................................TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGGGGCGGGGGGGGAGGTGCAGGAGCTGTATCTGGTGGGGGGGGGGCGTGGACACCCGCTGGCGAGGGGAAGAAAGAGGGAAAGAAGGGGGAAGAAAAAGGAGGATCTGGTGGA......................................................................................................GACCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11416" PGL_stop="18383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11416" e_stop="11549"/>
            <exon e_start="15855" e_stop="16162"/>
            <exon e_start="16578" e_stop="17124"/>
            <exon e_start="18365" e_stop="18383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.786" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11416" e_stop="11549" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.786" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="15855" e_stop="16162" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="16578" e_stop="17124" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="18365" e_stop="18383" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="11549"/>
              <exon start="15855" stop="16162"/>
              <exon start="16578" stop="17124"/>
              <exon start="18365" stop="18383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> S  N  L  P  I  *  R  H  Y  R  R  I  T  V  L  H  L  R  N  F  A  P  I  A  S  S  P  S  *  L  E  E  K  Q  W  N  F  L  H  I  L  I  L  K  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  Q  I  F  Q  F  D  A  I  T  D  A  S  Q  F  S  I  F  V  T  L  H  Q  S  H  H  H  H  H  D  *  R  R  N  S  G  I  S  F  I  F  S  S  *  K   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   K  S  S  N  L  T  P  L  Q  T  H  H  S  S  P  S  S  *  L  C  T  N  R  I  I  T  I  M  I  R  G  E  T  V  E  F  P  S  Y  S  H  L  K  K  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11503" stop="11549"/>
                    <exon start="15855" stop="16162"/>
                    <exon start="16578" stop="16924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEEKQWNFLHILILKRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14620" e_stop="15313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="14620" e_stop="15313" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14620" stop="15313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</gDNA_template>
            <first_frame> K  E  T  S  W  A  P  M  R  R  F  H  S  M  L  L  Q  P  M  K  S  V  G  V  K  K  K  I  L  H  G  W  N  E  M  C  L  N  T  V  V  I  *  G  F  F  L  Y  I  W  L  *  V  V  W  F  Q  G  L  L  Y  *  C  M  E  T  P  E  L  E  K  K  F  N  Y  V  G  R  K  S  Y  C  S  G  N  Y  I  T  Q  S  L  G  H  F  L  S  I  W  L  V  S  T  I  S  Y  K  V  L  I  M  K  S  K  C  I  F  *  V  S  T  F  A  L  I  L  K  W  C  L  Q  R  R  S  N  T  L  V  V  Q  T  T  M  T  L  R  K  *  K  G  K  M  L  N  E  L  L  K  K  P  L  S  A  V  P  L  S  I  *  H  *  P  G  F  D  T  P  D  V  Q  V  V  *  L  L  G  K  G  A  V  A  E  A  V  C  L  I  I  G  F  K  *  K  L  *  Q  F  A  Y  F  L  F  *  V  *  *  L  V  A  S  P  L  N  H  S  Q  C  *  S  Y  C  M  </first_frame>
            <second_frame>  R  R  L  A  G  L  P  *  G  V  F  I  P  C  C  F  N  P  *  S  L  L  E  *  K  K  K  S  C  T  D  G  M  K  C  A  *  I  Q  S  L  Y  K  D  F  F  Y  I  F  G  S  K  *  C  G  F  K  D  Y  F  I  D  A  W  K  L  R  S  W  R  K  S  S  I  M  *  V  G  S  L  I  V  Q  E  I  I  *  P  K  A  *  G  I  S  S  R  S  G  *  L  A  P  S  H  I  R  C  L  L  *  R  A  N  V  F  F  E  L  V  H  L  P  L  S  *  N  G  A  Y  K  E  D  Q  I  P  W  L  F  K  Q  P  *  L  *  G  N  E  K  G  R  C  *  M  S  C  *  R  N  L  S  L  L  F  P  *  V  F  D  T  N  L  D  L  T  H  Q  M  F  K  W  C  D  C  L  G  K  G  L  *  L  K  Q  F  V  *  *  L  G  L  N  R  S  Y  N  S  L  H  I  S  Y  F  K  S  D  D  *  *  R  L  H  L  T  I  V  N  V  D  P  T  A  * </second_frame>
            <third_frame>   G  D  *  L  G  S  H  E  A  F  S  F  H  A  A  S  T  H  E  V  C  W  S  K  K  K  N  P  A  R  M  E  *  N  V  P  E  Y  S  R  Y  I  R  I  F  F  I  Y  L  A  L  S  S  V  V  S  R  I  T  L  L  M  H  G  N  S  G  V  G  E  K  V  Q  L  C  R  S  E  V  L  L  F  R  K  L  Y  N  P  K  L  R  A  F  P  L  D  L  A  S  *  H  H  L  I  *  G  A  Y  Y  E  E  Q  M  Y  F  L  S  *  Y  I  C  P  Y  L  K  M  V  L  T  K  K  I  K  Y  L  G  C  S  N  N  H  D  F  E  E  M  K  R  E  D  V  E  *  V  A  K  E  T  S  L  C  C  S  L  K  Y  L  T  L  T  W  I  *  H  T  R  C  S  S  G  V  I  A  W  E  R  G  C  S  *  S  S  L  F  D  N  W  V  *  I  E  A  I  T  V  C  I  F  L  I  L  S  L  M  I  S  S  V  S  T  *  P  *  S  M  L  I  L  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14721" stop="14921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPEYSRYIRIFFIYLALSSVVSRITLLMHGNSGVGEKVQLCRSEVLLFRKLYNPKLRAFPLDLAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14296" e_stop="14465"/>
            <exon e_start="15855" e_stop="16123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14296" e_stop="14465" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14466" i_stop="15854" i_length="1389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15855" e_stop="16123" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14296" stop="14465"/>
              <exon start="15855" stop="16123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</gDNA_template>
            <first_frame> E  G  I  T  T  T  A  K  P  E  P  P  E  N  S  K  D  F  K  Q  L  V  Q  N  A  F  F  R  F  V  R  H  L  N  E  T  P  A  K  R  R  K  F  S  E  Q  A  G  S  L  K  C  L  V  C  G  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  </first_frame>
            <second_frame>  K  V  L  L  L  Q  Q  N  L  N  L  L  R  T  L  R  I  L  S  S  W  S  K  M  P  S  S  G  S  *  G  T  *  M  R  L  Q  L  K  E  E  N  S  V  S  K  L  V  V  *  S  A  S  C  V  A   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V </second_frame>
            <third_frame>   R  Y  Y  Y  Y  S  K  T  *  T  S  *  E  L  *  G  F  *  A  A  G  P  K  C  L  L  Q  V  R  E  A  L  E  *  D  S  S  *  K  K  K  I  Q  *  A  S  W  *  F  K  V  P  R  V  W  Q  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14296" stop="14465"/>
                    <exon start="15855" stop="16122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGITTTAKPEPPENSKDFKQLVQNAFFRFVRHLNETPAKRRKFSEQAGSLKCLVCGRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35437" PGL_stop="30838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35437" e_stop="35353"/>
            <exon e_start="32268" e_stop="32169"/>
            <exon e_start="32069" e_stop="31882"/>
            <exon e_start="31121" e_stop="30838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35437" e_stop="35353" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32268" e_stop="32169" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32069" e_stop="31882" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31121" e_stop="30838" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35437" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG : CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</gDNA_template>
            <first_frame> R  K  R  R  S  I  L  P  V  V  V  A  V  A  C  R  S  R  R  S  E  I  L  P  S  I  A  E   : A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M  S  R  L  C  K  W  *  L  I  C  F  S  N  S  C  M  L  *  D  Q  M  F  L  L  A  F  Q  S  I  R  N  L  L  S  V  M  T  K  D  S  D  G  L  F  S  L  *  P  F  I  L </first_frame>
            <second_frame>  E  N  G  E  A  Y  F  P  *  L  *  Q  *  L  A  G  A  G  D  R  R  Y  F  R  P  *  P  K  :  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  Q  G  C  A  S  G  D  *  F  A  F  P  I  A  V  C  Y  E  I  R  C  S  Y  W  L  F  K  A  L  E  T  F  C  L  *  *  P  R  I  V  M  D  Y  S  V  F  N  L  L  S   </second_frame>
            <third_frame>   K  T  E  K  H  T  S  R  S  C  S  S  S  L  P  E  P  A  I  G  D  T  S  V  H  S  R  S :   *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V  K  V  V  Q  V  V  T  N  L  L  F  Q  *  L  Y  V  M  R  S  D  V  L  T  G  F  S  K  H  *  K  P  F  V  C  N  D  Q  G  *  *  W  I  I  Q  S  L  T  F  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35358" stop="35353"/>
                    <exon start="32268" stop="32169"/>
                    <exon start="32069" stop="31882"/>
                    <exon start="31121" stop="30966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGCQGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="54517" PGL_stop="52163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54517" e_stop="54241"/>
            <exon e_start="53260" e_stop="53232"/>
            <exon e_start="53123" e_stop="52929"/>
            <exon e_start="52835" e_stop="52751"/>
            <exon e_start="52590" e_stop="52515"/>
            <exon e_start="52299" e_stop="52163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.064" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.405" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.787" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54517" e_stop="54241" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54240" i_stop="53261" i_length="980"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53260" e_stop="53232" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.064" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53231" i_stop="53124" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53123" e_stop="52929" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.690">
            <gDNA_intron_boundary i_start="52928" i_stop="52836" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52835" e_stop="52751" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.405" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52750" i_stop="52591" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52590" e_stop="52515" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.787">
            <gDNA_intron_boundary i_start="52514" i_stop="52300" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52299" e_stop="52163" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54517" stop="54241"/>
              <exon start="53260" stop="53232"/>
              <exon start="53123" stop="52929"/>
              <exon start="52835" stop="52751"/>
              <exon start="52590" stop="52515"/>
              <exon start="52299" stop="52163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG : GTTTTGCAGTTATAAAATATCAAATCCAA : TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG : GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG : GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG : GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</gDNA_template>
            <first_frame> S  M  A  R  G  F  L  I  S  T  Q  T  K  N  S  S  H  F  L  L  N  S  I  S  E  T  S  R  L  T  K  L  P  Y  Y  P  S  S  S  S  L  R  F  S  L  S  P  P  P  S  P  P  R  F  L  C  S  C  C  S  H  F  Q  E  N  G  T  I  D  M  S  V  H  S  E  A  F  A  K  R  M  A  M  V  G  L  K  P  H  H  R  I   : G  F  A  V  I  K  Y  Q  I  Q  :  F  W  A  F  L  V  A  L  I  A  W  P  S  V  S  *  L  L  H  G  K  P  I  T  L  V  M  L  L  K  R  M  S  L  L  T  G  F  *  Q  W  *  L  I  M  D  F  V  L  R  V  K  M  K  L  T  L  F  I  V  E  S  Q  A  W  :  E  S  N  V  R  L  F  A  V  N  G  Q  K  A  S  Q  S  R  V  T  C  K  K  L  L  A  R  R   : G  M  K  F  S  K  V  L  A  S  G  I  R  L  V  C  *  *  L  H  T  M  Q  M  T  R :   Q  N  Y  S  F  L  G  Y  L  A  V  V  A  C  L  D  S  L  E  W  H  L  F  Q  S  C  F  L  H  V  Q  I  *  V  L  K  *  V  A  M  D  F  Y  W  *  </first_frame>
            <second_frame>  Q  W  R  E  A  S  *  F  L  H  K  P  K  I  L  H  I  F  F  *  T  P  F  L  K  L  Q  D  *  L  N  Y  P  I  T  L  L  H  H  L  S  V  S  L  F  H  L  L  L  L  H  L  G  F  C  A  V  V  A  V  T  S  K  K  M  A  Q  L  T  C  Q  Y  T  Q  R  H  L  Q  S  V  W  L  W  W  V  S  N  P  I  I  V  L  :  V  L  Q  L  *  N  I  K  S  N :   S  G  R  F  W  W  P  *  *  H  G  P  L  C  L  N  C  C  M  E  N  Q  *  P  W  *  C  C  S  K  E  *  V  C  *  R  A  F  S  S  G  S  *  S  W  T  S  C  *  E  *  R  *  S  S  P  C  S  S  S  S  H  K  H  G :   N  Q  M  *  D  C  L  L  *  M  V  R  R  Q  A  K  A  G  S  L  A  R  S  C  S  P  E  E  :  V  *  N  S  P  K  C  L  H  P  A  S  D  W  C  V  D  D  C  T  P  C  R  *  P   : G  R  T  I  H  S  *  V  I  S  Q  *  W  R  A  W  T  R  W  N  G  I  C  F  R  A  V  F  Y  M  S  R  F  K  C  *  S  E  *  Q  W  T  F  I  G  E </second_frame>
            <third_frame>   N  G  A  R  L  L  D  F  Y  T  N  Q  K  F  F  T  F  S  S  K  L  H  F  *  N  F  K  I  N  *  I  T  L  L  P  F  F  I  I  S  P  F  L  S  F  T  S  S  F  S  T  S  V  S  V  Q  L  L  Q  S  L  P  R  K  W  H  N  *  H  V  S  T  L  R  G  I  C  K  A  Y  G  Y  G  G  S  Q  T  P  S  S  Y  W :   F  C  S  Y  K  I  S  N  P   : I  L  G  V  S  G  G  P  D  S  M  A  L  C  V  L  T  A  A  W  K  T  N  N  L  G  N  A  A  Q  K  N  E  F  V  D  G  L  L  A  V  V  V  D  H  G  L  R  A  E  S  K  D  E  A  H  L  V  H  R  R  V  T  S  M   : G  I  K  C  E  I  V  C  C  E  W  S  E  G  K  P  K  Q  G  H  L  Q  E  A  A  R  Q  K  R :   Y  E  I  L  Q  S  A  C  I  R  H  Q  I  G  V  L  M  T  A  H  H  A  D  D  Q  :  A  E  L  F  I  L  R  L  S  R  S  S  G  V  L  G  L  A  G  M  A  S  V  S  E  L  F  F  T  C  P  D  L  S  A  E  V  S  S  N  G  L  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54311" stop="54241"/>
                    <exon start="53260" stop="53232"/>
                    <exon start="53123" stop="52929"/>
                    <exon start="52835" stop="52751"/>
                    <exon start="52590" stop="52515"/>
                    <exon start="52299" stop="52165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVSTLRGICKAYGYGGSQTPSSYWFCSYKISNPILGVSGGPDSMALCVLTAAWKTNNLGNAAQKNEFVDGLLAVVVDHGLRAESKDEAHLVHRRVTSMGIKCEIVCCEWSEGKPKQGHLQEAARQKRYEILQSACIRHQIGVLMTAHHADDQAELFILRLSRSSGVLGLAGMASVSELFFTCPDLSAEVSSNGLLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="58552" PGL_stop="59186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58552" e_stop="59186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="58552" e_stop="59186" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58552" stop="59186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATTCTGTAG</gDNA_template>
            <first_frame> C  H  S  Q  K  C  S  N  I  E  *  N  R  T  C  K  E  I  H  *  Q  Q  K  R  *  V  D  Y  C  K  H  E  L  F  S  A  D  C  G  M  H  K  N  E  E  A  *  N  S  *  K  S  N  *  D  C  G  K  T  L  I  Q  R  *  V  A  *  V  L  R  Y  K  A  R  R  V  H  W  E  T  S  T  S  V  S  D  M  D  Y  C  R  I  S  S  G  K  A  A  Y  C  Q  S  R  G  C  K  D  G  N  Q  C  G  G  Y  R  T  S  K  C  F  F  K  H  S  E  F  K  P  K  A  K  T  I  T  K  R  S  *  T  V  L  H  H  M  K  V  L  F  L  L  L  K  P  *  V  C  T  I  D  L  R  *  T  Q  M  E  *  *  L  S  V  E  I  H  I  V  D  P  Q  S  A  R  D  *  S  I  L  C  C  Y  L  K  L  L  Y  S  Y  Y  I  S  A  R  Y  T  Y  *  C  *  K  F  C   </first_frame>
            <second_frame>  V  I  H  R  N  V  L  T  *  S  R  I  E  H  V  K  R  Y  I  D  S  R  K  D  E  L  I  I  V  N  M  N  C  F  Q  L  T  V  A  C  I  K  M  K  R  P  E  I  A  E  K  A  I  K  I  A  E  R  R  L  S  R  D  R  W  P  E  Y  Y  D  T  R  R  G  G  F  I  G  K  Q  A  R  L  F  Q  T  W  T  I  A  G  Y  L  V  A  K  L  L  I  A  N  P  E  A  A  K  M  V  I  N  V  E  D  T  E  L  L  S  A  F  S  S  I  L  S  S  N  P  R  R  K  R  S  R  K  G  V  K  Q  S  F  I  I  *  K  F  Y  F  C  Y  L  S  L  K  C  V  L  L  T  *  D  E  L  K  W  N  D  N  C  Q  W  R  F  I  *  S  T  P  K  V  L  E  I  E  A  Y  C  V  V  T  *  S  F  C  I  V  T  I  Y  L  R  D  I  H  T  S  V  E  N  S  V  </second_frame>
            <third_frame>   S  F  T  E  M  F  *  H  R  V  E  S  N  M  *  R  D  T  L  T  A  E  K  M  S  *  L  L  *  T  *  T  V  F  S  *  L  W  H  A  *  K  *  R  G  L  K  *  L  K  K  Q  L  R  L  R  K  D  A  Y  P  E  I  G  G  L  S  T  T  I  Q  G  E  E  G  S  L  G  N  K  H  V  C  F  R  H  G  L  L  Q  D  I  *  W  Q  S  C  L  L  P  I  Q  R  L  Q  R  W  *  S  M  W  R  I  Q  N  F  *  V  L  F  Q  A  F  *  V  Q  T  Q  G  E  N  D  H  E  K  E  L  N  S  P  S  S  Y  E  S  F  I  F  V  T  *  A  L  S  V  Y  Y  *  P  E  M  N  S  N  G  M  I  I  V  S  G  D  S  Y  S  R  P  P  K  C  S  R  L  K  H  T  V  L  L  P  K  A  F  V  *  L  L  Y  I  C  A  I  Y  I  L  V  L  K  I  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58580" stop="58984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIEHVKRYIDSRKDELIIVNMNCFQLTVACIKMKRPEIAEKAIKIAERRLSRDRWPEYYDTRRGGFIGKQARLFQTWTIAGYLVAKLLIANPEAAKMVINVEDTELLSAFSSILSSNPRRKRSRKGVKQSFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="62188" PGL_stop="59614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62188" e_stop="61798"/>
            <exon e_start="61409" e_stop="61274"/>
            <exon e_start="60940" e_stop="60846"/>
            <exon e_start="60033" e_stop="59960"/>
            <exon e_start="59774" e_stop="59614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="0.842"/>
          <exon-intron don_prob="0.769" acc_prob="0.917" e_score="0.568"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62188" e_stop="61798" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61797" i_stop="61410" i_length="388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61409" e_stop="61274" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61273" i_stop="60941" i_length="333"/>
          </intron>
          <exon e_serial="3" e_score="0.842">
            <gDNA_exon_boundary e_start="60940" e_stop="60846" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60845" i_stop="60034" i_length="812"/>
          </intron>
          <exon e_serial="4" e_score="0.568">
            <gDNA_exon_boundary e_start="60033" e_stop="59960" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.769" acc_prob="0.917">
            <gDNA_intron_boundary i_start="59959" i_stop="59775" i_length="185"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59774" e_stop="59614" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62188" stop="61798"/>
              <exon start="61409" stop="61274"/>
              <exon start="60940" stop="60846"/>
              <exon start="60033" stop="59960"/>
              <exon start="59774" stop="59614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG : GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT : CTGATATTCTTGGGGCTCTGGAGAGGTGGATGCATACAGAGCCATTGCCAGCTGATGCAGCGGAAAAAGTTGTTGAATTAATAAGTCTTATACTG : TAGAAAAGCCCCATCTTAAAAAAGCAAAAGCTCTTTACAATGAGAAGAGTTTCTGCAAGAGGTCATTTCTGAAG : GTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</gDNA_template>
            <first_frame> V  A  L  P  E  P  T  T  I  E  V  L  S  D  E  V  L  T  L  *  Y  S  D  N  S  S  P  F  K  I  T  K  L  P  S  F  S  L  C  C  S  S  L  S  Q  I  P  I  S  H  F  S  S  S  Y  *  I  P  I  S  S  *  R  K  L  *  K  C  K  N  Q  S  F  N  G  I  R  N  G  L  K  Y  K  T  F  F  C  S  L  C  V  S  W  K  H  M  Q  K  S  S  C  *  R  C  F  Y  R  F  G  *  E  K  G  A  *  F  K  V  *  D  *  F  C  W  Y  Y  *  L  S  *   : G  K  *  S  *  S  K  N  E  G  C  C  *  K  A  W  N  C  D  N  V  Y  I  *  A  N  *  G  F  *  F  Q  R  F  *  S  H  S  C  Y  G  *  A  K  Q  I :   *  Y  S  W  G  S  G  E  V  D  A  Y  R  A  I  A  S  *  C  S  G  K  S  C  *  I  N  K  S  Y  T   : V  E  K  P  H  L  K  K  A  K  A  L  Y  N  E  K  S  F  C  K  R  S  F  L  K  :  V  L  D  M  L  E  D  A  C  D  S  L  L  E  S  I  V  T  E  Q  N  L  G  S  *  M  Y  F  N  H  Q  Y  S  Y  C  Q  *  G  N  W  L  F  K  A  Y  T  M  Y  S  T  A  H  C   </first_frame>
            <second_frame>  L  H  Y  Q  N  Q  P  P  L  K  F  *  V  M  R  S  L  L  F  S  T  V  T  I  L  A  P  S  K  L  P  N  C  H  H  S  H  Y  A  A  P  H  S  L  K  F  P  F  L  T  S  L  L  P  T  K  S  P  F  L  L  K  E  S  Y  K  S  V  K  I  K  A  L  M  E  S  G  M  D  S  S  T  K  P  F  S  V  L  F  V  C  L  G  N  I  C  R  S  P  A  A  E  G  V  F  T  D  L  V  K  K  R  G  L  D  S  K  F  K  I  D  S  A  G  T  I  N  Y  H  E  :  G  N  E  A  D  P  R  M  R  A  A  A  K  R  R  G  I  A  I  T  S  I  S  R  P  I  R  A  S  D  F  K  D  F  D  L  I  L  A  M  D  E  Q  N  K   : S  D  I  L  G  A  L  E  R  W  M  H  T  E  P  L  P  A  D  A  A  E  K  V  V  E  L  I  S  L  I  L  :  *  K  S  P  I  L  K  K  Q  K  L  F  T  M  R  R  V  S  A  R  G  H  F  *  R :   Y  *  I  C  L  K  M  L  V  I  H  C  W  K  A  L  *  Q  N  K  I  *  V  H  R  C  T  L  I  T  S  I  L  T  A  N  K  A  I  G  Y  S  K  H  I  P  C  T  L  L  L  I  V  </second_frame>
            <third_frame>   C  I  T  R  T  N  H  H  *  S  F  E  *  *  G  P  Y  S  L  V  Q  *  Q  F  *  P  L  Q  N  Y  Q  T  A  I  I  L  T  M  L  L  L  T  L  S  N  S  H  F  S  L  L  F  F  L  L  N  P  H  F  F  L  K  K  A  I  K  V  *  K  S  K  L  *  W  N  Q  E  W  T  Q  V  Q  N  L  F  L  F  S  L  C  V  L  E  T  Y  A  E  V  Q  L  L  K  V  F  L  Q  I  W  L  R  K  G  G  L  I  Q  S  L  R  L  I  L  L  V  L  L  I  I  M  R :   E  M  K  L  I  Q  E  *  G  L  L  L  K  G  V  E  L  R  *  R  L  Y  L  G  Q  L  G  L  L  I  S  K  I  L  I  S  F  L  L  W  M  S  K  T  N  :  L  I  F  L  G  L  W  R  G  G  C  I  Q  S  H  C  Q  L  M  Q  R  K  K  L  L  N  *  *  V  L  Y  C :   R  K  A  P  S  *  K  S  K  S  S  L  Q  *  E  E  F  L  Q  E  V  I  S  E   : G  T  R  Y  A  *  R  C  L  *  F  T  V  G  K  H  C  D  R  T  K  F  R  F  I  D  V  L  *  S  P  V  F  L  L  P  I  R  Q  L  V  I  Q  S  I  Y  H  V  L  Y  C  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62151" stop="61798"/>
                    <exon start="61409" stop="61274"/>
                    <exon start="60940" stop="60846"/>
                    <exon start="60033" stop="60031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMRSLLFSTVTILAPSKLPNCHHSHYAAPHSLKFPFLTSLLPTKSPFLLKESYKSVKIKALMESGMDSSTKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGLDSKFKIDSAGTINYHEGNEADPRMRAAAKRRGIAITSISRPIRASDFKDFDLILAMDEQNKSDILGALERWMHTEPLPADAAEKVVELISLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="64122" PGL_stop="63769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64122" e_stop="63769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="64122" e_stop="63769" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64122" stop="63769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTTAAAACCTGAGAATGTGTTGGTCCGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAGTATCTAGCTCCGGAG</gDNA_template>
            <first_frame> D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  N  P  T  L  V  K  S  S  S  P  I  I  E  L  P  K  K  S  S  P  C  S  A  S  C  I  D  P  F  C  L  H  P  S  W  Q  V  S  C  F  G  P  R  F  L  S  T  E  A  K  T  R  K  I  K  A  D  L  A  A  Q  V  S  P  L  T  Q  L  V  V  E  P  T  N  A  R  S  N  S  F  V  G  T  H  E  Y  L  A  P  E </first_frame>
            <second_frame>  T  *  N  L  R  M  C  W  S  E  K  T  V  I  S  C  C  L  I  L  I  Y  L  L  G  V  L  L  I  L  P  W  *  N  R  L  L  P  S  L  S  F  Q  K  S  L  V  R  A  Q  L  A  A  *  I  P  S  A  Y  I  R  R  G  K  Y  L  A  L  A  P  G  F  Y  L  Q  K  Q  R  H  V  K  *  R  L  T  *  L  H  K  S  H  L  *  H  S  L  L  W  S  Q  P  T  L  D  P  T  H  L  *  E  P  T  S  I  *  L  R   </second_frame>
            <third_frame>   L  K  T  *  E  C  V  G  P  R  R  R  S  Y  H  A  V  *  F  *  F  I  S  *  V  C  C  *  S  Y  L  G  E  I  V  F  S  H  H  *  A  S  K  K  V  *  S  V  L  S  *  L  H  R  S  L  L  P  T  S  V  V  A  S  I  L  L  W  P  Q  V  S  I  Y  R  S  K  D  T  *  N  K  G  *  P  S  C  T  S  L  T  F  N  T  A  C  C  G  A  N  Q  R  S  I  Q  L  I  C  R  N  P  R  V  S  S  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64122" stop="63769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKSSSPIIELPKKSSPCSASCIDPFCLHPSWQVSCFGPRFLSTEAKTRKIKADLAAQVSPLTQLVVEPTNARSNSFVGTHEYLAPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="74568" PGL_stop="79299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74568" e_stop="75201"/>
            <exon e_start="79053" e_stop="79299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="74568" e_stop="75201" e_length="634"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75202" i_stop="79052" i_length="3851"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79053" e_stop="79299" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74568" stop="75201"/>
              <exon start="79053" stop="79299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAG : GTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</gDNA_template>
            <first_frame> Q  K  K  K  T  R  A  K  N  G  A  M  A  R  R  L  S  R  R  S  S  K  H  Q  L  Q  L  Y  Y  H  Y  R  N  *  Y  *  P  V  D  *  L  R  L  R  S  H  M  D  G  Y  G  F  F  Y  L  I  Q  L  S  S  P  P  Y  H  *  A  T  R  R  Y  S  F  R  *  S  L  L  G  R  H  Y  T  G  Y  F  N  F  Y  F  V  G  N  F  S  N  *  S  P  I  S  P  S  I  R  I  R  R  Y  R  F  R  F  S  R  G  N  Q  S  C  S  G  N  G  D  F  E  I  D  G  G  I  G  V  L  C  S  E  S  Y  G  *  E  G  T  C  E  P  *  *  G  R  K  S  E  D  *  T  G  N  T  *  N  V  R  S  S  F  P  S  H  A  L  C  F  Y  *  F  T  E  M  V  V  F  I  N  G  V  L  P  R  R  *  F  T  R  T  P  A  T  S  N  R  R  N  A  S  M  N  P  L  S   : G  S  M  C  R  R  W  W  W  R  W  S  T  F  T  *  W  E  *  F  T  A  T  *  N  L  K  M  F  W  S  D  Q  M  V  I  S  C  S  R  T  L  I  S  R  *  N  V  T  P  L  H  Q  H  Q  L  K  *  F  Q  A  K  I  H  L  M  V  D  L  N  K  M  S  T  K  L  N  H  Q  S  S  Q   </first_frame>
            <second_frame>  K  R  K  K  L  E  P  K  M  E  P  W  L  D  D  L  V  D  D  L  Q  S  I  S  F  N  S  T  T  T  T  A  T  D  I  N  R  S  T  S  S  G  S  E  A  T  W  T  A  T  A  S  S  I  S  S  S  S  L  H  H  H  I  T  K  P  R  A  A  T  P  S  G  D  P  Y  W  D  A  I  T  R  G  I  S  T  S  T  S  S  A  I  S  L  T  D  L  R  F  L  H  R  L  G  S  G  D  I  G  S  V  F  L  A  E  I  K  A  A  P  V  T  E  I  S  K  S  T  A  V  S  A  Y  F  A  A  K  V  M  D  K  K  E  L  A  S  R  N  K  E  G  R  A  R  T  E  R  E  I  L  E  M  L  D  H  P  F  L  P  T  L  Y  A  S  I  D  S  P  K  W  S  C  L  L  T  E  F  C  P  G  G  D  L  H  V  L  R  Q  R  Q  T  G  E  T  L  P  *  I  R  C  Q  :  V  L  C  V  G  G  G  G  G  V  G  V  H  S  H  D  G  N  S  L  P  R  L  E  T  *  K  C  F  G  P  I  R  W  S  Y  H  A  H  G  L  *  S  L  V  K  M  *  H  L  Y  I  N  T  S  S  S  D  F  K  P  K  Y  T  *  W  W  T  S  T  K  *  V  Q  N  *  T  T  K  V  H  S  </second_frame>
            <third_frame>   K  E  K  N  S  S  Q  K  W  S  H  G  S  T  T  *  S  T  I  F  K  A  S  A  S  T  L  L  P  L  P  Q  L  I  L  T  G  R  L  A  P  A  P  K  P  H  G  R  L  R  L  L  L  S  H  P  A  L  F  T  T  I  S  L  S  H  A  P  L  L  L  P  V  I  L  T  G  T  P  L  H  G  V  F  Q  L  L  L  R  R  Q  F  L  *  L  I  S  D  F  S  I  D  *  D  P  A  I  *  V  P  F  F  S  R  K  S  K  L  L  R  *  R  R  F  R  N  R  R  R  Y  R  R  T  L  Q  R  K  L  W  I  R  R  N  L  R  A  V  I  R  K  E  E  R  G  L  N  G  K  Y  L  K  C  *  I  I  L  S  F  P  R  F  M  L  L  L  I  H  R  N  G  R  V  Y  *  R  S  F  A  P  A  V  I  Y  T  Y  S  G  N  V  K  P  A  K  R  F  H  E  S  A  V  R :   F  Y  V  S  E  V  V  V  A  L  E  Y  I  H  M  M  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  S  D  G  H  I  M  L  T  D  F  D  L  S  L  K  C  D  T  S  T  S  T  P  A  Q  V  I  S  S  Q  N  T  P  N  G  G  P  Q  Q  N  E  Y  K  I  E  P  P  K  F  T  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74569" stop="75189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKKLEPKMEPWLDDLVDDLQSISFNSTTTTATDINRSTSSGSEATWTATASSISSSSLHHHITKPRAATPSGDPYWDAITRGISTSTSSAISLTDLRFLHRLGSGDIGSVFLAEIKAAPVTEISKSTAVSAYFAAKVMDKKELASRNKEGRARTEREILEMLDHPFLPTLYASIDSPKWSCLLTEFCPGGDLHVLRQRQTGETLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="79800" PGL_stop="83945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79800" e_stop="80477"/>
            <exon e_start="83322" e_stop="83352"/>
            <exon e_start="83930" e_stop="83945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.233" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.158" e_score="0.613"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79800" e_stop="80477" e_length="678"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.233">
            <gDNA_intron_boundary i_start="80478" i_stop="83321" i_length="2844"/>
          </intron>
          <exon e_serial="2" e_score="0.613">
            <gDNA_exon_boundary e_start="83322" e_stop="83352" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.158">
            <gDNA_intron_boundary i_start="83353" i_stop="83929" i_length="577"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="83930" e_stop="83945" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79800" stop="80477"/>
              <exon start="83322" stop="83352"/>
              <exon start="83930" stop="83945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTAGA : AAATTGTGACTTAAATAAGAAAACAAAAATA : AATTAAAAAAAAAAAA</gDNA_template>
            <first_frame> *  R  I  S  L  *  W  K  L  P  *  Y  L  S  *  I  L  L  A  Y  I  P  Q  T  L  Q  K  Y  C  C  T  R  I  R  S  Y  Y  *  L  V  *  I  K  T  Q  K  K  S  K  I  L  D  Q  K  R  M  E  E  E  E  R  S  D  L  W  W  T  F  V  G  S  *  *  I  L  T  H  Q  Y  E  Y  E  A  I  *  I  Q  Q  R  H  *  F  L  L  L  F  A  S  Q  C  S  I  V  H  C  Y  Y  Y  R  W  T  K  K  G  R  F  I  F  *  I  F  Y  K  S  M  P  L  S  K  T  L  D  P  D  K  I  H  V  D  N  C  Y  T  S  K  G  P  G  C  V  K  D  L  V  G  W  W  K  V  K  N  M  G  Q  H  H  V  F  A  N  L  V  L  F  L  V  E  K  H  D  V  S  M  *  F  V  *  L  L  G  S  C  K  V  V  G  *  *  L  V  M  G  G  C  L  V  N  F  I  N  Y  I  K  I  F  S  T  *  I  I  I  M  V  F  I  R  :  K  L  *  L  K  *  E  N  K  N   : K  L  K  K  K   </first_frame>
            <second_frame>  K  E  F  L  S  D  G  S  C  P  D  T  S  V  E  Y  Y  *  P  I  S  L  R  L  F  R  N  I  V  A  L  V  S  D  P  T  T  N  *  C  E  *  R  L  K  K  S  Q  K  F  W  T  R  K  E  W  K  K  K  K  E  V  I  C  G  G  L  L  L  D  L  N  E  Y  *  P  T  N  M  N  M  R  L  Y  E  Y  N  K  D  I  S  F  C  C  C  L  L  A  N  A  L  L  Y  I  A  I  I  I  G  G  Q  R  K  E  G  S  F  S  K  S  F  I  S  Q  C  L  C  L  K  H  W  I  L  T  K  Y  M  *  T  I  V  T  Q  A  K  G  L  V  V  *  R  I  W  L  G  G  G  R  S  R  I  W  V  S  I  M  F  L  L  I  L  F  F  S  L  W  K  S  M  M  F  P  C  D  L  F  N  Y  *  D  L  V  R  L  *  G  S  S  *  S  W  V  G  A  L  *  I  S  *  I  T  *  K  Y  F  P  H  K  *  L  S  W  Y  L  L  E :   N  C  D  L  N  K  K  T  K  I  :  N  *  K  K  K  </second_frame>
            <third_frame>   K  N  F  S  L  M  E  V  A  L  I  P  Q  L  N  T  T  S  L  Y  P  S  D  S  S  E  I  L  L  H  S  Y  Q  I  L  L  L  T  S  V  N  K  D  S  K  K  V  K  N  F  G  P  E  K  N  G  R  R  R  K  K  *  F  V  V  D  F  C  W  I  L  M  N  I  D  P  P  I  *  I  *  G  Y  M  N  T  T  K  T  L  V  F  V  V  V  C  *  P  M  L  Y  C  T  L  L  L  L  *  V  D  K  E  R  K  V  H  F  L  N  L  L  *  V  N  A  F  V  *  N  I  G  S  *  Q  N  T  C  R  Q  L  L  H  K  Q  R  A  W  L  C  E  G  F  G  W  V  V  E  G  Q  E  Y  G  S  A  S  C  F  C  *  S  C  S  F  P  C  G  K  A  *  C  F  H  V  I  C  L  I  I  R  I  L  *  G  C  R  V  V  A  S  H  G  W  V  P  C  E  F  H  K  L  H  K  N  I  F  H  I  N  N  Y  H  G  I  Y  *   : K  I  V  T  *  I  R  K  Q  K  * :   I  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80157" stop="80351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYKSMPLSKTLDPDKIHVDNCYTSKGPGCVKDLVGWWKVKNMGQHHVFANLVLFLVEKHDVSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="87216" PGL_stop="95019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87216" e_stop="87443"/>
            <exon e_start="88817" e_stop="88902"/>
            <exon e_start="88969" e_stop="89057"/>
            <exon e_start="89160" e_stop="89399"/>
            <exon e_start="89538" e_stop="89659"/>
            <exon e_start="90158" e_stop="90233"/>
            <exon e_start="90424" e_stop="90531"/>
            <exon e_start="90646" e_stop="90822"/>
            <exon e_start="90961" e_stop="91178"/>
            <exon e_start="91650" e_stop="91782"/>
            <exon e_start="92667" e_stop="92890"/>
            <exon e_start="93945" e_stop="94098"/>
            <exon e_start="94354" e_stop="95019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.777" e_score="0.988"/>
          <exon-intron don_prob="0.979" acc_prob="0.974" e_score="0.992"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87216" e_stop="87443" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88817" e_stop="88902" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88969" e_stop="89057" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.926">
            <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="89160" e_stop="89399" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.777">
            <gDNA_intron_boundary i_start="89400" i_stop="89537" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="89538" e_stop="89659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.974">
            <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90158" e_stop="90233" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90424" e_stop="90531" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90646" e_stop="90822" e_length="177"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="0.976">
            <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90961" e_stop="91178" e_length="218"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="91650" e_stop="91782" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="92667" e_stop="92890" e_length="224"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="92891" i_stop="93944" i_length="1054"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93945" e_stop="94098" e_length="154"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="94354" e_stop="95019" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87216" stop="87443"/>
              <exon start="88817" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89399"/>
              <exon start="89538" stop="89659"/>
              <exon start="90158" stop="90233"/>
              <exon start="90424" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91178"/>
              <exon start="91650" stop="91782"/>
              <exon start="92667" stop="92890"/>
              <exon start="93945" stop="94098"/>
              <exon start="94354" stop="94358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94033" stop="94098"/>
              <exon start="94354" stop="95019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT : GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG : GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA : GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAG : GTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT : GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG : GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG : GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA : ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG : TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG : ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG : TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG : TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAC</gDNA_template>
            <first_frame> S  L  R  K  Q  I  S  A  A  N  R  K  *  D  W  K  S  G  D  G  D  G  R  D  G  G  S  R  S  E  *  E  R  K  S  G  G  G  G  G  G  G  N  R  N  G  Y  W  T  G  S  S  S  S  C  S  C  *  T  S  S  S  I  *  A  S  L  S  R  F  T  S  V  C  *  L  :  V  *  K  K  L  H  A  P  R  R  G  Y  S  C  C  C  F  S  S  R  F  F  H  *  W  E  Y  *  W :   S  P  E  I  L  E  E  K  A  Y  W  Y  R  V  C  K  T  F  *  I  S  S  W  T  N  *  R  P  C   : S  *  H  *  W  Y  A  L  L  Y  N  F  K  *  *  V  S  E  N  I  *  R  S  E  L  *  H  D  V  H  D  S  S  S  L  H  T  W  M  C  *  M  G  I  *  T  R  G  C  Q  G  *  T  C  R  *  *  S  *  L  L  I  G  A  Y  I  *  C  K  S  W  Y  K  *  S  Y  N  I  *  R   : G  T  V  V  P  H  Q  S  H  E  I  Q  S  C  L  *  Y  C  D  I  S  R  *  Q  R  D  H  *  V  L  E  S  C  H  T  *  V  P  R  E  S  :  G  E  F  *  I  E  E  *  Y  *  S  L  *  N  C  E  M  Q  N  C  C  F  F  Y  R   : G  K  P  *  W  *  T  V  L  G  N  F  T  R  S  Q  D  S  Y  I  L  V  Q  D  R  *  T  K  T  C  V  *  *  I  S  *   : G  G  T  R  S  P  E  E  *  C  S  F  I  P  T  *  S  Y  *  L  W  T  K  N  G  C  G  K  R  N  *  E  N  R  M  C  T  T  T  *  C  C  F  *  *  K  F  Q  F  H  Y  I  C  N  S  P  R  N  *   : N  Y  K  S  T  H  *  Q  G  I  S  Y  P  G  E  G  G  E  Q  *  *  I  F  E  N  C  F  V  S  R  *  *  K  *  *  K  S  K  K  N  P  C  C  G  S  K  C  K  *  K  Q  G  A  L  D  R  S  Q  S  T  L  L  C  F  Q  E  T  *  N  L  F  V  Q  :  S  E  R  T  *  G  T  *  *  S  Y  Q  G  K  R  C  L  Q  *  K  A  T  S  *  *  T  F  G  R  I  *  H  W  E  V  R  Y  Y  I  P  S  R  *  C   : D  H  A  Y  Q  Y  G  *  H  S  Y  E  A  I  P  *  R  V  S  K  N  S  G  E  L  Y  N  T  L  Q  E  W  I  L  *  *  F  D  I  S  S  G  H  Q  R  L  Y  G  S  D  R  R  S  I  R  R  W  H  G  W  P  I  Y  L  G  K  G  V  *  R  *  V  P  *  K  :  S  A  T  *  *  T  L  H  C  L  D  G  *  C  W  A  K  H  K  W  L  S  I  L  H  N  N  C  C  H  S  M  V  G  Q  *  A  H  S  F  W  Q  S  G  E  R  N  G  C  C  T   : V  F  R  E  S  E  D  R  Q  R  *  Q  A  I  P  G  C  K  N  I  E  C  D  C  S  K  V  L  N  G  F  L  L  W  L  C  S  L  L  D  S  L  H  L  L  Y  S  G  E  L  E  G  V  L  R  L  Y  V  G  K  Y  C  Y  P  R  W  T  L  I  *  H  V  S  V  *  S  M  T  S  G  T  F  L  K  T  C  Y  T  T  *  I  P  S  V  L  R  N  F  S  C  L  R  E  V  E  F  H  L  L  H  S  S  *  K  D  I  S  E  W  E  L  L  A  D  L  V  L  G  L  A  H  C  H  K  E  C  T  I  S  V  F  H  S  R  F  I  S  E  T  E  R  P  S  L  L  S  M  F  M  L  W  T  V  I  Y  R  V  R  D  L  D  V  V  F  A  V  S  N  E  L  Q  Q  V  *  T  F  L  T  S  F  *  V  L  A  S  Y  I  *  I  V  A  A  V  T  V  Q  D  P  I  M  N  S  N  Y  Q  *  A  S  F  H  F  S  </first_frame>
            <second_frame>  H  L  E  S  K  F  L  Q  Q  I  G  S  E  I  G  N  P  A  T  A  T  G  E  M  E  E  A  D  Q  N  E  N  G  N  P  A  A  A  V  V  E  E  T  E  T  V  I  G  P  G  P  A  P  R  A  R  A  K  R  P  L  Q  F  E  Q  A  Y  L  D  S  L  P  S  A  N  L :   Y  E  K  S  Y  M  H  R  D  V  V  T  H  V  A  V  S  A  A  D  F  F  I  S  G  S  T  D   : G  H  L  K  F  W  K  K  K  P  T  G  I  E  F  A  K  H  F  R  S  H  L  G  P  I  E  G  L  A  :  V  S  I  D  G  M  L  C  C  T  I  S  S  D  K  S  L  K  I  Y  D  V  V  N  Y  D  M  M  S  M  I  R  L  P  F  I  P  G  C  V  E  W  V  Y  K  Q  G  D  V  K  A  K  L  A  V  S  D  R  N  S  S  L  V  H  I  Y  D  A  R  A  G  T  N  D  P  I  I  S  K  E  :  V  Q  L  C  P  I  K  V  M  K  Y  N  H  V  F  D  T  V  I  S  A  D  D  K  G  I  I  E  Y  W  S  P  A  T  L  K  F  P  E  N  L :   V  N  F  R  L  K  S  D  T  D  L  F  E  I  V  K  C  K  T  A  V  S  S  I  E  :  V  S  P  D  G  K  Q  F  S  V  T  S  P  D  R  R  I  R  I  F  W  F  K  T  G  K  L  R  R  V  Y  D  E  S  L  E  :  V  A  Q  D  L  Q  R  S  D  V  P  L  Y  R  L  E  A  I  D  F  G  R  R  M  A  V  E  K  E  I  E  K  T  E  C  V  P  Q  P  N  A  V  F  D  E  S  S  N  F  I  I  Y  A  T  L  L  G  I  K  :  I  I  N  L  H  T  N  K  V  S  R  I  L  G  K  V  E  S  N  D  R  F  L  R  I  A  L  Y  Q  G  D  R  S  S  K  K  V  R  K  I  P  A  A  A  A  N  A  N  E  S  K  E  P  L  I  D  P  N  L  L  C  C  A  F  K  K  H  R  I  Y  L  F  S :   Q  R  E  P  E  E  P  D  D  P  T  K  G  R  D  V  F  N  E  K  P  P  P  D  E  L  L  A  V  S  D  I  G  K  S  V  T  T  S  L  P  D  N  V  :  I  M  H  T  S  M  G  D  I  H  M  K  L  Y  P  E  E  C  P  K  T  V  E  N  F  T  T  H  C  R  N  G  Y  Y  D  N  L  I  F  H  R  V  I  R  G  F  M  V  Q  T  G  D  P  L  G  D  G  T  G  G  Q  S  I  W  G  R  E  F  E  D  E  F  H  K  S :   L  R  H  D  R  P  F  T  V  S  M  A  N  A  G  P  N  T  N  G  S  Q  F  F  I  T  T  V  A  T  P  W  L  D  N  K  H  T  V  F  G  R  V  V  K  G  M  D  V  V  Q  :  S  L  E  K  V  K  T  D  K  G  D  K  P  Y  Q  D  V  K  I  L  N  V  T  V  P  K  S  *  M  G  S  C  C  G  Y  A  P  Y  W  I  V  Y  I  C  F  I  L  E  N  W  K  E  Y  Y  D  F  T  L  E  S  I  A  I  L  V  G  P  *  S  D  M  Y  L  C  N  L  *  L  L  V  L  F  S  K  P  A  I  Q  H  R  F  L  Q  F  *  E  T  F  R  A  S  G  K  *  N  S  T  C  F  T  Q  V  E  R  I  L  V  N  G  S  C  W  L  I  W  Y  *  D  *  L  I  A  T  R  S  V  R  S  A  F  S  T  Q  D  S  L  V  R  Q  N  G  L  A  Y  Y  Q  C  S  C  C  G  Q  *  F  I  E  L  E  T  *  M  L  F  S  R  F  Q  M  N  Y  N  K  C  R  P  F  *  H  L  F  K  S  *  L  H  I  F  E  L  *  L  Q  L  L  Y  K  T  L  L  *  I  Q  I  I  S  K  L  H  F  T  S  H </second_frame>
            <third_frame>   T  *  K  A  N  F  C  S  K  S  E  V  R  L  E  I  R  R  R  R  R  E  R  W  R  K  Q  I  R  M  R  T  E  I  R  R  R  R  W  W  R  K  P  K  R  L  L  D  R  V  Q  L  L  V  L  V  L  N  V  L  F  N  L  S  K  L  I  S  I  H  F  R  L  L  T   : C  M  K  K  V  T  C  T  E  T  W  L  L  M  L  L  F  Q  Q  Q  I  F  S  L  V  G  V  L  M  :  V  T  *  N  F  G  R  K  S  L  L  V  S  S  L  Q  N  I  L  D  L  I  L  D  Q  L  K  A  L  Q :   L  A  L  M  V  C  F  A  V  Q  F  Q  V  I  S  L  *  K  Y  M  T  *  *  I  M  T  *  C  P  *  F  V  F  P  S  Y  L  D  V  L  N  G  Y  I  N  K  G  M  S  R  L  N  L  P  L  V  I  V  T  P  H  W  C  I  Y  M  M  Q  E  L  V  Q  M  I  L  *  Y  L  K  R :   Y  S  C  A  P  S  K  S  *  N  T  I  M  S  L  I  L  *  Y  Q  Q  M  T  K  G  S  L  S  T  G  V  L  P  H  L  S  S  Q  R  I   : W  *  I  L  D  *  R  V  I  L  I  S  L  K  L  *  N  A  K  L  L  F  L  L  *  R :   *  A  L  M  V  N  S  S  R  *  L  H  Q  I  A  G  F  V  Y  F  G  S  R  Q  V  N  *  D  V  C  M  M  N  L  L  R :   W  H  K  I  S  R  G  V  M  F  L  Y  T  D  L  K  L  L  T  L  D  E  E  W  L  W  K  K  K  L  R  K  Q  N  V  Y  H  N  L  M  L  F  L  M  K  V  P  I  S  L  Y  M  Q  L  S  *  E  L  K :   L  *  I  Y  T  L  T  R  Y  L  V  S  W  G  R  W  R  A  M  I  D  F  *  E  L  L  C  I  K  V  I  E  V  V  K  K  *  E  K  S  L  L  R  Q  Q  M  Q  M  K  A  R  S  P  *  *  I  P  I  Y  F  A  V  L  S  R  N  I  E  S  I  C  S   : V  R  E  N  L  R  N  L  M  I  L  P  R  E  E  M  S  S  M  K  S  H  L  L  M  N  F  W  P  Y  L  T  L  G  S  P  L  L  H  P  F  Q  I  M  * :   S  C  I  P  V  W  V  T  F  I  *  S  Y  T  L  K  S  V  Q  K  Q  W  R  T  L  Q  H  T  A  G  M  D  T  M  I  I  *  Y  F  I  G  S  S  E  A  L  W  F  R  Q  E  I  H  *  E  M  A  R  V  A  N  L  F  G  E  G  S  L  K  M  S  S  I  K   : V  C  D  M  I  D  P  S  L  S  R  W  L  M  L  G  Q  T  Q  M  A  L  N  S  S  *  Q  L  L  P  L  H  G  W  T  I  S  T  Q  F  L  A  E  W  *  K  E  W  M  L  Y  S :   L  *  R  K  *  R  P  T  K  V  T  S  H  T  R  M  *  K  Y  *  M  *  L  F  Q  S  L  K  W  V  L  V  V  A  M  L  L  I  G  *  F  T  S  A  L  F  W  R  T  G  R  S  T  T  T  L  R  W  K  V  L  L  S  S  L  D  P  D  L  T  C  I  C  V  I  Y  D  F  W  Y  F  S  Q  N  L  L  Y  N  I  D  S  F  S  F  K  K  L  F  V  P  P  G  S  R  I  P  L  A  S  L  K  L  K  G  Y  *  *  M  G  V  A  G  *  S  G  I  R  I  S  S  L  P  Q  G  V  Y  D  Q  R  F  P  L  K  I  H  *  *  D  R  T  A  *  L  I  I  N  V  H  V  V  D  S  N  L  *  S  *  R  P  R  C  C  F  R  G  F  K  *  T  T  T  S  V  D  L  F  D  I  F  L  S  P  S  F  I  Y  L  N  C  S  C  S  Y  C  T  R  P  Y  Y  E  F  K  L  S  V  S  F  I  S  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87217" stop="87443"/>
                    <exon start="88817" stop="88902"/>
                    <exon start="88969" stop="89057"/>
                    <exon start="89160" stop="89399"/>
                    <exon start="89538" stop="89659"/>
                    <exon start="90158" stop="90233"/>
                    <exon start="90424" stop="90531"/>
                    <exon start="90646" stop="90822"/>
                    <exon start="90961" stop="91178"/>
                    <exon start="91650" stop="91782"/>
                    <exon start="92667" stop="92890"/>
                    <exon start="93945" stop="94098"/>
                    <exon start="94354" stop="94437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1935</number_coding_nucleotides>
                  <number_encoded_amino_acids>645</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLESKFLQQIGSEIGNPATATGEMEEADQNENGNPAAAVVEETETVIGPGPAPRARAKRPLQFEQAYLDSLPSANLYEKSYMHRDVVTHVAVSAADFFISGSTDGHLKFWKKKPTGIEFAKHFRSHLGPIEGLAVSIDGMLCCTISSDKSLKIYDVVNYDMMSMIRLPFIPGCVEWVYKQGDVKAKLAVSDRNSSLVHIYDARAGTNDPIISKEVQLCPIKVMKYNHVFDTVISADDKGIIEYWSPATLKFPENLVNFRLKSDTDLFEIVKCKTAVSSIEVSPDGKQFSVTSPDRRIRIFWFKTGKLRRVYDESLEVAQDLQRSDVPLYRLEAIDFGRRMAVEKEIEKTECVPQPNAVFDESSNFIIYATLLGIKIINLHTNKVSRILGKVESNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPLIDPNLLCCAFKKHRIYLFSQREPEEPDDPTKGRDVFNEKPPPDELLAVSDIGKSVTTSLPDNVIMHTSMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIRGFMVQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQSLEKVKTDKGDKPYQDVKILNVTVPKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94475" stop="94702"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSALFWRTGRSTTTLRWKVLLSSLDPDLTCICVIYDFWYFSQNLLYNIDSFSFKKLFVPPGSRIPLASLKLKGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94692" stop="94904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDISEWELLADLVLGLAHCHKECTISVFHSRFISETERPSLLSMFMLWTVIYRVRDLDVVFAVSNELQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="97104" PGL_stop="95224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97104" e_stop="97070"/>
            <exon e_start="96977" e_stop="96864"/>
            <exon e_start="95751" e_stop="95525"/>
            <exon e_start="95422" e_stop="95415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.246" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.890"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97104" e_stop="97070" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.246">
            <gDNA_intron_boundary i_start="97069" i_stop="96978" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96864" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="0.890">
            <gDNA_exon_boundary e_start="95751" e_stop="95525" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.875">
            <gDNA_exon_boundary e_start="95422" e_stop="95415" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97104" stop="97070"/>
              <exon start="96977" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA : TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGG</gDNA_template>
            <first_frame> P  Y  A  I  K  A  Y  K  S  H  T  N :   F  V  C  I  C  R  *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G </first_frame>
            <second_frame>  P  T  P  L  K  L  T  N  L  T  Q   : I  L  C  V  F  V  D  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M   </second_frame>
            <third_frame>   L  R  H  *  S  L  Q  I  S  H  K  :  F  C  V  Y  L  *  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97103" stop="97070"/>
                    <exon start="96977" stop="96864"/>
                    <exon start="95751" stop="95525"/>
                    <exon start="95422" stop="95417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPLKLTNLTQILCVFVDKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97075" e_stop="97070"/>
            <exon e_start="96959" e_stop="96864"/>
            <exon e_start="95751" e_stop="95525"/>
            <exon e_start="95422" e_stop="95224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.896"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97075" e_stop="97070" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.896">
            <gDNA_exon_boundary e_start="96959" e_stop="96864" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="95751" e_stop="95525" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95422" e_stop="95224" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAA : ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</gDNA_template>
            <first_frame> H  K  :  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  A  S  V  S  S  I  R  G  M  F  N  W  F  L  Y  E  W  S  C  S  P  V  P  V  E  F  I  L  G  I  F  L  S  T  Y  C  F  R  F  *  F  S  *  C  T  Y  I  L  L  G  K  H  L  E  S  I  G  N  Y  *  Y  C  W  I </first_frame>
            <second_frame>  T  K :   *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G  L  Q  S  L  R  L  E  E  C  L  T  G  F  C  M  N  G  L  V  P  Q  F  P  L  S  L  F  W  E  S  F  C  Q  L  T  V  F  A  F  S  L  V  N  A  P  I  F  C  L  V  N  I  L  S  Q  L  E  I  T  S  I  V  G   </second_frame>
            <third_frame>   Q   : N  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M  G  F  S  L  F  D  *  R  N  V  *  L  V  S  V  *  M  V  L  F  P  S  S  R  *  V  Y  S  G  N  L  F  V  N  L  L  F  S  L  L  V  *  L  M  H  L  Y  F  A  W  *  T  S  *  V  N  W  K  L  L  V  L  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97073" stop="97070"/>
                    <exon start="96959" stop="96864"/>
                    <exon start="95751" stop="95525"/>
                    <exon start="95422" stop="95396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95420" stop="95226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGLQSLRLEECLTGFCMNGLVPQFPLSLFWESFCQLTVFAFSLVNAPIFCLVNILSQLEITSIVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 156768 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 11197 bytes was the average size of a spliced alignment
$ 17560 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1756 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:52:09
-->
