<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:49:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E395749" ref_strand="+" ref_description="SGN-E395749 	[TUS-17-F2]">
      <seq>tcaaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaactaaagaaccattgacagacaaagtaggtaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="11116" stop="17110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="11549" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16162" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="442" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16578" g_stop="16810" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="675" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E395749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="11549"/>
          <exon e_start="15855" e_stop="16162"/>
          <exon e_start="16578" e_stop="16810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATC</genome_strand>
        <mrna_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E210503" ref_strand="+" ref_description="SGN-E210503 	[cLEC-35-D9]">
      <seq>caaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="11117" stop="17076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="11549" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16162" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16578" g_stop="16776" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="640" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E210503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="11549"/>
          <exon e_start="15855" e_stop="16162"/>
          <exon e_start="16578" e_stop="16776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAAC</genome_strand>
        <mrna_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E210415" ref_strand="+" ref_description="SGN-E210415 	[cLEC-35-C11]">
      <seq>caaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="11117" stop="16320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="11549" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16020" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="299" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E210415" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="11549"/>
          <exon e_start="15855" e_stop="16020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTA</genome_strand>
        <mrna_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E419623" ref_strand="+" ref_description="SGN-E419623 	[STM-29-N22]">
      <seq>ggattattttgagtcccgcagagcactagaccaaagaaagccagatgtggacatattggattatggggctaatcgtctacagtatgaaaatgaaacacatcgaggctatgaaagctcccgtaaaagagagcttcataagtatcagatggatgatgatcttctagaaagatctgatgccttgtatagagaacatgacccccatttagagaaaaacatggcacaatgagcaatcgtagtgctggaattatgatttcaagtgatataaggagtgcacacataacccatgaccgtgaagatgctgatgaaatgcggatcagtagggatatggattctgtagttatgtctagaaagccaaatgtcccgcgctccaaatatgtgaagaatggtaggccacacaaagccgctgccactaatagttccaccagaaacctttcagtgtcaatgttgagacgtacaagcaaatttagtaaatctggtggaagtgatataaagaagcggctggggccacgttaccagaatgttgatgttgaacgcccactangaacaaaatataaatcttcactgaagaagcgtttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="13224" stop="14474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13524" g_stop="13729" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13730" i_stop="13802" i_length="73">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13803" g_stop="14174" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="578" r_length="372" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E419623" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13524" e_stop="13729"/>
          <exon e_start="13803" e_stop="14174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGG</genome_strand>
        <mrna_strand>GGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATGTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAAACACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAACATGACCCCCATTTAG.........................................................................AGAAAAACATGGCACAATGAGCAATCGTAGTGCTGGAATTATGATTTCAAGTGATATAAGGAGTGCACACATAACCCATGACCGTGAAGATGCTGATGAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTCCCGCGCTCCAAATATGTGAAGAATGGTAGGCCACACAAAGCCGCTGCCACTAATAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTANGAACAAAATATAAATCTTCACTGAAGAAGCGTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E444498" ref_strand="+" ref_description="SGN-E444498 	[cSTA-43-K7]">
      <seq>ggattattttgagtcccgcagagcactagaccaaagaaagccagatgtggacatattggattatggggctaatcgtctacagtatgaaaatgaaacacatcgaggctatgaaagctcccgtaaaagagagcttcataagtatcagatggatgatgatcttctagaaagatctgatgccttgtatagagaacatgacccccatttagagaaaaacatggcacaatgagcaatcgtagtgctggaattatgatttcaagtgatataaggagtgcacacataacccatgaccgtgaagatgctgatgaaatgcggatcagtagggatatggattctgtagttatgtctagaaagccaaatgtcccgcgctccaaatatgtgaagaatggtaggccacacaaagccgctgccactaatagttccaccagaaacctttcagtgtcaatgttgagacgtacaagcaaatttagtaaatctggtggaagtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="13224" stop="14384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13524" g_stop="13729" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13730" i_stop="13802" i_length="73">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13803" g_stop="14084" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="488" r_length="282" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E444498" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13524" e_stop="13729"/>
          <exon e_start="13803" e_stop="14084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATAT</genome_strand>
        <mrna_strand>GGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATGTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAAACACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAACATGACCCCCATTTAG.........................................................................AGAAAAACATGGCACAATGAGCAATCGTAGTGCTGGAATTATGATTTCAAGTGATATAAGGAGTGCACACATAACCCATGACCGTGAAGATGCTGATGAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTCCCGCGCTCCAAATATGTGAAGAATGGTAGGCCACACAAAGCCGCTGCCACTAATAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E339634" ref_strand="+" ref_description="SGN-E339634 	[cTOE-16-N10]">
      <seq>gaaggtattactactacagcaaaacctgaacctcctgagaactctaaggattttaagcagctggtccaaaatgccttcttcaggttcgtgaggcacttgaatgagactccagctaaaagaagaaaattcagtgagcaagctggtagtttaaagtgcctcgtgtgtggcagagattcagaagagtttgtagactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="13996" stop="16423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14296" g_stop="14465" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14466" i_stop="15854" i_length="1389">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15855" g_stop="16123" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="439" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E339634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14296" e_stop="14465"/>
          <exon e_start="15855" e_stop="16123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</genome_strand>
        <mrna_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E537431" ref_strand="+" ref_description="SGN-E537431 	[TUS-56-A11]">
      <seq>aaggagactagctgggctcccatgaggcgttttcattccatgctgcttcaacccatgaagtctgttggagtaaaaaaaaaaatcctgcacggacggaatgaaatgtgcctgaatacagtcgttatataaggattttttttatatatttggctctaagtagtgtggtttcaaggattactttattgatgcatggaaactccggagttggagaaaaagttcaattatgtaggtcggaagtcttattgttcaggaaattatataacccaaagcttagggcatttcctctcgatctggctagttagcaccatctcatataaggtgcttattatgaagagcaaatgtattttttgagttagtacatttgcccttatcttaaaatggtgcttacaaagaagatcaaataccttggttgttcaaacaaccatgactttgaggaaatgaaaagggaagatgttgaatgagttgctaaagaaacctcttctgctgttcccttaagtatttgacactaacctggatttgacacaccagatgttcaagtggtgtgattgcttgggaaaggggctgtagctgaagcagtttgtttgataattgggtttaaaatagagctataacagtttgcatatttcttattttaagtctgatgattagtagcgtctccacttaaccatagtcaatgttgatcctactgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="14320" stop="15613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14620" g_stop="15313" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E537431" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14620" e_stop="15313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTT-AAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</genome_strand>
        <mrna_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGACGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCT-TCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAAATAG-AGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E265138" ref_strand="+" ref_description="SGN-E265138 	[cLEI-2-O15]">
      <seq>aggagactagctgggctcccatgaggcgttttcattccatgctgcttcaacccatgaagtctgttggagtaaaaaaaaaaatcctgcacggatggaatgaaatgtgcctgaatacagtcgttatataaggattttttttatatatttggctctaagtagtgtggtttcaaggattactttattgatgcatggaaactccggagttggagaaaaagttcaattatgtaggtcggaagtcttattgttcaggaaattatataacccaaagcttagggcatttcctctcgatctggctagttagcaccatctcatataaggtgcttattatgaagagcaaatgtattttttgagttagtacatttgcccttatcttaaaatggtgcttacaaagaagatcaaataccttggttgttcaaacaaccatgactttgaggaaatgaaaagggaagatgttgaatgagttgctaaagaaacctcttctgctgttcccttaagtatttgacactaacctggatttgacacaccagatgttcaagtggtgtgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="14321" stop="15470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14621" g_stop="15170" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E265138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14621" e_stop="15170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCT</genome_strand>
        <mrna_strand>AGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCT-TCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E455519" ref_strand="+" ref_description="SGN-E455519 	[cSTS-26-D19]">
      <seq>cagatgttcatgtggtgtgattgcttggggaaggggcaataggtgaagcagtttgtttgataattgggtttaaatagtggctataacagttagcatatttcttattttcagtctgatgattagtagtgtctccacttgaccatagtcaatgttgagcttaatgcatgatcaaataggagaatctgcatacacgtgtacacggcttcagttatttgcatatttagtgaccaattctagaccttgttgggcggacatagtttttagcctagtctctgcacatccagttaatctttgttggctttggattttgcttctctcagttgcttatttttatcagatgagatgagaattttttcttgatgagtcttgtttaaagataatatctcttgtaggggccacctgaatgaagaacttaagttaacacctgcagatctgttgtcttttatgaaaaataaattcattttagaggtatttttggttggtaagttgagtaacggtctatttgtctgtttaagtatctagaatgttatcgcttacctttttcctgctatattccagttatatttaccgttaactcagagaactgtatagcttattttcttctcttcgtattgaccttgttttgtttctcaaaactttattggaccttttcttcatcaagaactttactggacttttttctttatgtcgtcttctatgctgtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="14846" stop="16153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15146" g_stop="15853" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E455519" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15146" e_stop="15853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCA</genome_strand>
        <mrna_strand>CAGATGTTCATGTGGTGTGATTGCTTGGGGAAGGGGCAATAGGTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGTGGCTATAACAGTTAGCATATTTCTTATTTTCAGTCTGATGATTAGTAGTGTCTCCACTTGACCATAGTCAATGTTGAGCTTAATGCATGATCAAATAGGAGAATCTGCATACACGTGTACACGGCTTCAGTTATTTGCATATTTAGTGACCAATTCTAGACCTTGTTGGGCGGACATAGTTTTTAGCCTAGTCTCTGCACATCCAGTTAATCTTTGTTGGCTTTGGATTTTGCTTCTCTCAGTTGCTTATTTT-TATCAGATGAGATGAGAATTTTTTCTTGATGAGTCTTGTTTAAAGATAATATCTCTTGTAGGGGCCACCTGAATGAAGAACTTAAGTTAACACCTGCAGATCTGTTGTCTTTTATGAAAAATAAATTCATTTTAGAGGTATTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTTATCGCTTACCTTTTTCCTGCTATATTCCAGTTATATTTACCGTTAACTCAGAGAACTGTATAGCTTATTTTCTTCTCTTCGTATTGACCTTGTTTTGTTTCTCAAAACTTTATTGGACCTTTTCTTCATCAAGAACTTTACTGGACTTTTTTCTTTATGTCGTCTTCTATGCTGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E617688" ref_strand="+" ref_description="SGN-E617688 	[66541]">
      <seq>gccacctgaatgaagaacttaagttaacgcctgcagatctgttgtcttttatgaaaaataaattcattttagaggtatttttggttggtaagttgagtaacggtctatttgtctgtttaagtatctagaatgttattgcttaccttttccctgttatattccagttatatttactgttaactcagagaactgtatagcttattttcttctcttcttattgaccttgttttgtttctcaaaactttattggacctttttttcatcaagaactttactggacttttttctttatgtcgtcttctatgctgtttcagagattcagaagagttcgcagactcagaaagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcacagcacttaggctttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggttcgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataaatagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaaacctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtaagactttgtgacatatatgcccataggaagcatggaagggcggagttccagcgtatcagttctggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="15241" stop="17054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15541" g_stop="16162" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16578" g_stop="16754" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="799" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E617688" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15541" e_stop="16162"/>
          <exon e_start="16578" e_stop="16754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGT</genome_strand>
        <mrna_strand>GCCACCTGAATGAAGAACTTAAGTTAACGCCTGCAGATCTGTTGTCTTTTATGAAAAATAAATTCATTTTAGAGGTATTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTTATTGCTTACCTTTTCCCTGTTATATTCCAGTTATATTTACTGTTAACTCAGAGAACTGTATAGCTTATTTTCTTCTCTTCTTATTGACCTTGTTTTGTTTCTCAAAACTTTATTGGACCTTTTTTTCATCAAGAACTTTACTGGACTTTTTTCTTTATGTCGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTCGCAGACTCAGAAAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCACAGCACTTAGGCTTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTCGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAAATAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAACCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTAAGACTTTGTGACATATATGCCCATAGGAAGCATGGAAGGGCGGAGTTCCAGCGTATCAGTTCTGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E419624" ref_strand="-" ref_description="SGN-E419624 	[STM-29-N22]">
      <seq>aggctttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggttcgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataaatagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaaacctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtaagactttgcgacatatatgcccataggaagcatggaagggcggagttccagcgtatcagttctggtcactctggaaacaatgacgatgaaactaaagaaccattgacagataaggtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgattttgaaacaaagaaacgaagttctgtgaggagcaaaaagcagatcaaggatattgcagttgcgccttaagaaggaagaccaagttttagtttggcagggcaaaaatatatgttctgaatgatagctagacactttggcttttgcttttgcttgtagttaattatattttgctatctaacttgatgaaagtagatactcccaaatatgtctttaaaacacaggcttggaaatggttatattataaatatttttgcccattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="15639" stop="17368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15939" g_stop="16162" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16578" g_stop="17066" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="706" r_length="482" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="776"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E419624" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419624" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15939" e_stop="16162"/>
          <exon e_start="16578" e_stop="17066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAAT</genome_strand>
        <mrna_strand>AGGCTTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTCGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAAATAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAACCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTAAGACTTTGCGACATATATGCCCATAGGAAGCATGGAAGGGCGGAGTTCCAGCGTATCAGTTCTGGTCACTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGATAAGGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTTGAAACAAAGAAACGAAGTTCTGTGAGGAGCAAAAAGCAGATCAAGGATATTGCAGTTGCGCCTTAAGAAGG-AAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGC------TTTTGCTTTTGCTTGTAGTTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACTCCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E619945" ref_strand="+" ref_description="SGN-E619945 	[70640]">
      <seq>ttagatgggatggaagagtgcagattctcatgaagatagttgggttcgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataaatagcagcaatccagatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagagatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtaagactctgcgacatatatgcccataggaagcatggaagggcggagttccagcgtatcagttctggtcactctggaaacaatgacgatgaaaccaaagaaccattgacagataaggtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgattttgaaacaaagaaacgaagttctgtgaggagcaaaaagcagatcaaggatattgcagttgcgccttaagaaggaagaccaagttatagtttggcagggcaaaaatatatgttctgaatgatagctagacactttggcttttgcttgtagctaattatattttgctatctaacttgatgaaagtagatactcccaactatgtctttaaaacacaggcttggaaatggttatattataaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="15664" stop="17368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15963" g_stop="16162" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16578" g_stop="17064" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="674" r_length="474" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E619945" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15963" e_stop="16162"/>
          <exon e_start="16578" e_stop="17064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAA</genome_strand>
        <mrna_strand>TTAGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTCGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAAATAGCAGCAATCCAGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTAAGACTCTGCGACATATATGCCCATAGGAAGCATGGAAGGGCGGAGTTCCAGCGTATCAGTTCTGGTCACTCTGGAAACAATGACGATGAAACCAAAGAACCATTGACAGATAAGGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTTGAAACAAAGAAACGAAGTTCTGTGAGGAGCAAAAAGCAGATCAAGGATATTGCAGTTGCGCCTTAAGAAGG-AAGACCAAGTTATAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGC------TTTTGC--TTG--T--AGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E537428" ref_strand="-" ref_description="SGN-E537428 	[TUS-56-A11]">
      <seq>ttgttatcatccataacagtcccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaactaaagaaccattgacagacaaagtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgatttcgaaacgaagaaacgaagttctgtgaggagcaagaagcagatcaaggttattgcagttgcaccatgagaaggaaagaccaagttttagtttggcagggcaaaaatatatgttctgaatgatagctagacactttggctttgggttttgcttttgcttgcagctaattatattttgctatctaacttgatgaaagtagatacacccaaatatcatcatatatatatatatattattatatatatcatcatatcatatattattataaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="15773" stop="69100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16073" g_stop="16162" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16578" g_stop="17124" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="637" r_length="547" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18365" g_stop="18383" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E537428" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537428" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16073" e_stop="16162"/>
          <exon e_start="16578" e_stop="17124"/>
          <exon e_start="18365" e_stop="18383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAGTTGGAAGATTTTAAGTTCAAAGTTAGCTTATTAAAATGCCCTTCACTTATTTATTAAATTAGAAAATGTCATTTACAAAATTTGAAAATTAAATAAATAATGATAGCAAAACAGTTATTTTTTAATCTTTAATTATTGATCCTTTGAGTTTCTGCAGTTAAACTCATTCCAGCCGAACTTAATGCGTTACACTAAATTCAATACTTAAGATTGAAGATAGATAGTCATAATCTCTTTGATTACAATTCAAAAACGTTTCATGTCATATTTTTCTTAGTTATTGTTGATCAATGTTCATATAATTTTCTCCACCTTTTCATATTCTTTACATTACAAAACTAGTTTTCTATCTCTCATTTTCCATTCATTCTCATTCTGCTAGAGATTATTTTTTTCCAGGTATATTTATCCTTTTTATATATGTATGTGTGGTTTAAGCCTCAATCTTAATATGTTTAGTGATATAGTGTTTGATATGAAAAGGGAATGATTATTTTTAAATTAGAACTATTTATCCCAATTTTTTAAATTAATCTTTTGATTCGTATAATTAATTTTCATCTTATGAAAACAAAGATCAAAAGATCTTCGAAAATGAAAATAATGTTCGTCAATTTTTTTATTTTCATTTAAAAAATACTATTGTATATTTTTTTAAAAAAAGAATGTAATTCATATAAGCACAAAAGAAAAAGATTTTTATATTTGTGATTTCAGCAATAACTAGAATTGCATTTATTTCTTCTTCATGTCTTTGCTACTTTCGTCAAAGACTTTTATATCTGTTTAATATTTTTTTCGAGTAGAAATTCATTGTAAACTACTTCAATAAATAAGTTGTTTGATCTGGAAAAACAATTAGCTATTCATAGACATATTCATACCATAAGAGATTAAATCATAACTAAAATTGTTAATTTCTGCATTTCTTATTATATAACTGAACTTTATAACGAAATATTTAAAATAAAATATTAAGGAACAAACGTACAACGCACATTTCAGATACTAGTATTATTATAAGTGGGAAGATTTTGAGTTTAAAGTTACATTACGAAACTGTCCTTCACCAAATTAAAATATTATAACACGTCAAATTATTTAGATATTAAATGCACATACAAAATTCATTAACTATTTTTTATCTTGAGAAAAATTGAAAAAGAAATTAAATGTGGAATTAGAGAGTTCATGTATCTATTTCATTTGTACTACATTATCAAAAATCATGGAATTTTAGAAGAAAAAAAAGATGAAAC</genome_strand>
        <mrna_strand>TTGTTATCATCCATAACAGTCCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E395748" ref_strand="-" ref_description="SGN-E395748 	[TUS-17-F2]">
      <seq>tccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatttacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgaagaaactaaagaaccattgacagacaaagtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgatttcgaaacgaagaaacgaagttctgtgaggagcaagaagcagatcaaggttattgcagttgcaccatgagaaggaaagaccaagttttagtttggcagggcaaaaatatatgttttgaatgatagctagacactttgggtttgggttttgcttttgcttgcagctaattatattttgctatctaacttgatgaaagtagatacacccaaaagtcatcatatatatatatatattattatataaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="15793" stop="17423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16093" g_stop="16162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16578" g_stop="17096" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="589" r_length="519" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="616"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E395748" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16093" e_stop="16162"/>
          <exon e_start="16578" e_stop="17096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATAT</genome_strand>
        <mrna_strand>TCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATTTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGAAGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTTTGAATGATAGCTAGACACTTTGGGTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAAAGTCATCATATATATATATATATTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E284785" ref_strand="+" ref_description="SGN-E284785 	[cLES-3-D4]">
      <seq>tttttttttttttgggtgtatctactttcatcaagttagatagcaaaatataattagctgcaagcaaaagcaaaacccaaagccaaagtgtctagctatcattcagaacatatatttttgccctgccaaactaaaacttggtctttccttctcatggtgcaactgcaataaccttgatctgcttcttgctcctcacagaacttcgtttcttcgtttcgaaatcaactttgtccaggtcttctgcaattccaaggtaaccataaaggattttacctactttgtctgtcaatggttctttagtttcatcgtcattgtttccagactgaccagaacttatacgctggaaatccgcccttccatgcttccgatgggcgtagatatcacacagtctcactgcttcttccaaacctgagagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="17375" stop="16358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17075" g_stop="16658" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E284785" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17075" e_stop="16658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATGATATTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E570503" ref_strand="+" ref_description="SGN-E570503 	[15097]">
      <seq>cagaaaacggagaagcatacttcccgcagttgttgcagtagcttgccggagccggcgatcggagataattccgtccataaccgaagctgaaaaatgcctagagttaagacaaatcgtataaaataccctgagggttgggagctgattgagcctaccttagctgaattggatgctaaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgaccgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacaccttagggaagctgctgtaatagagtgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttacttttccaatagctgtacgttatgagatcagatgttctttctggcttttcaaagcattagaaacctttgtctgtaatgaccaaagatagtgatggattattcagtctttaaccttttatcctacttgacttttcagactattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35738" stop="30517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35438" g_stop="35353" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="375" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30817" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="680" r_length="305" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E570503" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35438" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTG-AAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGAC-TTTCAGACTATTTTT</genome_strand>
        <mrna_strand>CAGAAAACGGAGAAGCATACTTCCCGCAGTTGTTGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATAATTCCGTCCATAACCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAATGCCTAGAGTTAAGACAAATCGTATAAAATACCCTGAGGGTTGGGAGCTGATTGAGCCTACCTTAGCTGAATTGGATGCTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGACCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTTAGGGAAGCTGCTGTAATAGAGTGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTACTTTTCCAATAGCTGTACGTTATGAGATCAGATGTTCTTTCTGGCTTTTCAAAGCATTAGAAACC-TTTGTCTGTAATGACCAAAGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGACTTTTCAGACTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E406480" ref_strand="+" ref_description="SGN-E406480 	[PPI-3-N22]">
      <seq>gaagcatacttcccgcagttgtagcagtagcttgccggaaacggcgatcggagatcggagatacttccgttcataaccgaagctgaaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagctgattgagcctaccttagctgaactggatgctaaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacaccttagggaagcttctgtaatagagtgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagcagatgttctttctggcttttcaaagcattagaaacctttgtctgtaatgaccaaagatagtgatggattattcagtcttataccttttatcctacttgactttcagactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35727" stop="30522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35387" g_stop="35353" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="82" r_length="35" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="371" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30823" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="672" r_length="301" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E406480" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35387" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTG-AAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGAT---CAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGACTTTCAGACT</genome_strand>
        <mrna_strand>TCGGAGATCGGAGATACTTCCGTTCATAACCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGCTGATTGAGCCTACCTTAGCTGAACTGGATGCTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTTAGGGAAGCTTCTGTAATAGAGTGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGCAGATGTTCTTTCTGGCTTTTCAAAGCATTAGAAACC-TTTGTCTGTAATGACCAAAGATAGTGATGGATTATTCAGTCTTATACCTTTTATCCTACTTGACTTTCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E420584" ref_strand="-" ref_description="SGN-E420584 	[STM-31-O18]">
      <seq>aaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacaccttagggaagcttctgtaatagagtgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagcagatgttctttctggcttttcaaagcattagaaacctttgtctgtaatgaccaaagatagtgatggattattcagtcttataccttgtcacctacttgactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="32373" stop="30528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32181" g_stop="32169" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="201" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31121" g_stop="30828" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="497" r_length="296" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E420584" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420584" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32181" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGAT---CAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGACTTTC</genome_strand>
        <mrna_strand>AAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTTAGGGAAGCTTCTGTAATAGAGTGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGCAGATGTTCTTTCTGGCTTTTCAAAGCATTAGAAACC-TTTGTCTGTAATGACCAAAGATAGTGATGGATTATTCAGTCTTATACCTTGTCACCTACTTGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E309095" ref_strand="+" ref_description="SGN-E309095 	[cLEZ-1-O9]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35737" stop="30538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35437" g_stop="35353" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30838" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="657" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="668"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E309095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35437" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E374272" ref_strand="+" ref_description="SGN-E374272 	[TUS-33-F2]">
      <seq>ggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35730" stop="30538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35430" g_stop="35353" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="366" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30838" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="650" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="665"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E374272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35430" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>GGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E309096" ref_strand="-" ref_description="SGN-E309096 	[cLEZ-1-O9]">
      <seq>gaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="32572" stop="30538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32272" g_stop="32169" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="292" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31121" g_stop="30838" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="576" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="586"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E309096" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309096" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32272" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>GAAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E340677" ref_strand="+" ref_description="SGN-E340677 	[cTOF-1-L7]">
      <seq>gtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35713" stop="30540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35413" g_stop="35353" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="161" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="349" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30840" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="631" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E340677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35413" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCC</genome_strand>
        <mrna_strand>GTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E579631" ref_strand="+" ref_description="SGN-E579631 	[86762]">
      <seq>cggcacgaggagaaaacggagaagcatacttcccgcagttgttgcagtagcttgccggagccggcgatcggagataattccgtccataaccgaagctgaaaaatgcctagagttaagacaaatcgtataaaataccctgagggttgggagctgattgagcctaccttagctgaactggatgctaaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacaccttagggaagctgctgtaatagagtgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagcagatgttctttctggcttttcaaagcattagaaacctttgtctgtaatgaccaaagatagtgatggattattcagtctttaacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35737" stop="30543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35435" g_stop="35353" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="95" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="384" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30844" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="664" r_length="280" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E579631" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35435" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTG-AAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGAT---CAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTT</genome_strand>
        <mrna_strand>AAAACGGAGAAGCATACTTCCCGCAGTTGTTGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATAATTCCGTCCATAACCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAATGCCTAGAGTTAAGACAAATCGTATAAAATACCCTGAGGGTTGGGAGCTGATTGAGCCTACCTTAGCTGAACTGGATGCTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTTAGGGAAGCTGCTGTAATAGAGTGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGCAGATGTTCTTTCTGGCTTTTCAAAGCATTAGAAACC-TTTGTCTGTAATGACCAAAGATAGTGATGGATTATTCAGTCTTTAACCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E420583" ref_strand="+" ref_description="SGN-E420583 	[STM-31-O18]">
      <seq>gaagcatacttcccgcagttgtagcagtagcttgccggaaacggcgatcggagatcggagatacttccgttcataaccgaagctgaaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagctgattgagcctaccttagctgaactggatgctaaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacaccttagggaagcttctgtaatagagtgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagcagatgttctttctggcttttcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35727" stop="30616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35387" g_stop="35353" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="82" r_length="35" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="371" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30907" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="589" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E420583" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35387" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTG-AAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGAT---CAGATGTTCTTACTGGCTTTTCAAAGC</genome_strand>
        <mrna_strand>TCGGAGATCGGAGATACTTCCGTTCATAACCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGCTGATTGAGCCTACCTTAGCTGAACTGGATGCTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTTAGGGAAGCTTCTGTAATAGAGTGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGCAGATGTTCTTTCTGGCTTTTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E304238" ref_strand="+" ref_description="SGN-E304238 	[cLEX-6-B20]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35737" stop="30689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35437" g_stop="35353" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30989" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="506" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E304238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35437" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E300550" ref_strand="+" ref_description="SGN-E300550 	[cLET-45-M11]">
      <seq>gcggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtgcccaaacacctcagggaaactgctgtaattgaatgtgtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35731" stop="30698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35432" g_stop="35353" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="180" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="368" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="30998" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="492" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E300550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35432" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="30998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATT</genome_strand>
        <mrna_strand>GCGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTGCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E585112" ref_strand="+" ref_description="SGN-E585112 	[66830]">
      <seq>cagaaaacggagaagcatacttcccgcagttgttgcagtagcttgccggagccggcgatcggagataattccgtccataaccgaagctgaaaaatgcctagagttaagacaaatcgtataaaataccctgagggttgggagctgattgagcctaccttagctgaactggatgctaaaatgagagaagctggcaatgactctaatgatggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtacgaattctgtttggaacaaggttatgcagatcgcaacctgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcatgtcgtgtccccaaacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35738" stop="30730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35438" g_stop="35353" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="375" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31121" g_stop="31029" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="468" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E585112" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35438" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
          <exon e_start="31121" e_stop="31029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTG-AAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTC</genome_strand>
        <mrna_strand>CAGAAAACGGAGAAGCATACTTCCCGCAGTTGTTGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATAATTCCGTCCATAACCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAATGCCTAGAGTTAAGACAAATCGTATAAAATACCCTGAGGGTTGGGAGCTGATTGAGCCTACCTTAGCTGAACTGGATGCTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGATGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTACGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACCTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCATGTCGTGTCCCCAAACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E345899" ref_strand="+" ref_description="SGN-E345899 	[cTOF-24-B3]">
      <seq>cttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="35719" stop="31582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35419" g_stop="35353" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32268" g_stop="32169" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="167" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32069" g_stop="31882" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="355" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E345899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35419" e_stop="35353"/>
          <exon e_start="32268" e_stop="32169"/>
          <exon e_start="32069" e_stop="31882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG</genome_strand>
        <mrna_strand>CTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E423107" ref_strand="+" ref_description="SGN-E423107 	[STM-41-D13]">
      <seq>aaaatctcctacttctacgacggtgatgttggaagcgtatactttggtccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagcttatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagctagcgcagtttcattctgctgattatgtagaattcttgaacagaataaccccagaaactcagaacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgacaacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattgaataataagctttgtgatattgcaataaattgggctggtggattgcatcatgccaagaagtgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctaaagtatcatccgcgggtgctctatattgatattgatgtgcatcacggtgatggtgtagaagaggccttttattttactgacagggttatgaccgttagtttccacaagtatggggataagttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattccataaatgtgccctctcaggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="39822" stop="44802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40122" g_stop="40143" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40144" i_stop="40263" i_length="120">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40264" g_stop="40376" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="135" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40377" i_stop="40783" i_length="407">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40784" g_stop="40901" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="253" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40902" i_stop="41737" i_length="836">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41738" g_stop="41812" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="328" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41813" i_stop="41882" i_length="70">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41883" g_stop="42102" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="548" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42103" i_stop="42757" i_length="655">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42758" g_stop="42821" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="612" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42822" i_stop="44445" i_length="1624">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44446" g_stop="44502" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="669" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E423107" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40122" e_stop="40143"/>
          <exon e_start="40264" e_stop="40376"/>
          <exon e_start="40784" e_stop="40901"/>
          <exon e_start="41738" e_stop="41812"/>
          <exon e_start="41883" e_stop="42102"/>
          <exon e_start="42758" e_stop="42821"/>
          <exon e_start="44446" e_stop="44502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCTACTTCTACGACGGTAAGAGTTTTCTCTTTTTCTCCTTTTTCACTTCACACTGGAGAAATCACAAACCCTAGGTGTTGTTCATTCTGTATGCGAGTGTTTATTTTGTTTATGTAAGCTGAAATTTTGTTGCAGGTGATGTAGGAAGCGTATACTTTGGACCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCTTATGGTCTTCACAGCAAGATGGAAGTTTATGTTTGTTACTCTATCCTTTTCTCTTTTGTGAATGTGAAGTTTTCCGTTTTTTAAGAGTTAATGGTAAAAAACACATTTTTTTAGTTTCATACATGAGTTATGAGGTACGGCCTAATAGTATCCTGTTTTTTCAAGTTTCATACTTGAATTATGAGGTATGTGAGGTTCCTACGAGAATTATCGCCAACTATTTATCTAAACACAATCAGCTATCAGCTGTCCCTTCGTGCCTGAAATATCACCATCATTCGGGTGTGTTTTGGGAACAATTAATAGTTGAGGTATTACTGGTAAATAGTTGGTGATAGTTCAGATATGAAACTTGAATTCAAGTGTGTTTTTGACCCTTCGATCTTTTTCTTTTACTTTACTATTTTTGGTTTACCTTTTTTGATTGAACTGTGTAGAGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAGTTCTTGAATAGAATAACCCCAGATACTCAGAACTTGTTCCCTAGTGAAATGGCAAGATGTAAGTGTTGAACATTGTCTTATTTTTATCTCTTTTCCTTTGAAATATCATCTTTGAGCTGCATACTTATTGATATGAATCTAGCTTGTTCTAGTACTTGTCGTCTTCGAAAAAACAAGGATGCCACCACCACCAACAGCTACACCTAAATCCGAAGCTAGTTAAATCCTCAGTATTCATGTTAATACACTTAGACTTGTCTCAATGAATATTGAAAAATTAGGTTCTTTAGCACAAAACTAGAGAATTTACGAACATTCCTAGATCACATATATGAATGTTTTCATGTGCTCTATTAACTGTCTTAATGGATTTCTAGAGATTGAAAAGGCGGGGGAGGGGGGGGGTATGCGGAGCATATAGAACAACAATTACCTCCAACCCAACTACTTTTTTATTGGTAAATAAGTTTCATTGTTTGCAGCACTAAGAGAGTGCTAAATATTACAACAACGTACGGAAGTAATCCCTTCTACTAATTCTGGTACCTAATGATTATATCAGTTTGACAACTTCACATGTGTATTCTGAGTTACATCAAGTCGCCATCAAAAATGTATATTTTGATTTCATCCTAATTATTGTCAGCTTTTCCTTTGTACTGTCTCTAGTTTCTCTCCTTCCTTTTTTTCTGTACATGTCTTGGTTTTTTGGACTTTCTCCGACTTTTTTTGTATGATGAATAGGTGTAGTTAACAACTCACTATAAGATCAAAATGGAAACTAATTTTGATATCATAATTTTCTAAAGAGTATGCTTTTTGGCATCACGTCTTTTTAGATGATTTGTTTGGATAATGTGATGTTGAACTATTGCTTATCTGTTTACTTATCAGATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGGACAATAGGTAAAATTGGCCTTTAACATGCTATTACTGTTGAGTCTCAAATCACTTGCTAACAAAGATTTAGTGGCAGATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGCTTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTGAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCATGGTGATGGTGTAGAAGAGGCCTTTTATTTCACTGACAGGTGGAATTATTTTCTGTAGTTTTTCTCCAATTTTTCCTTTTTCCTTCTCTGTTTTTTCTTTCTCTAATGTTAAACCCGAGGATAAATTTTAAATCAATATGAAGGCTTAAAGTAGTAGCTAGTGAGTCTAGAGTGAGACTCCGAGAACCTGAATGATGATCAACTTTGCCAGTAAGAAATCTGTAGTGAAATTCTTTATACTACTGTAGATGTGACCTCTCAGAAGCATCTTCGTCTTACCCTCGTATTATCTGTGTCATGCATAGGAATAATTAAAGTGTCACATGTTCACTTGATTATTAAATTGCTGTTTATTCAGTAGCTGTGACAATGAAGCTTCCACCTTGGCACCAGTTGAATACTTCAATTTTTCAAAAAAAAATTGGCTTCTAACCAGTTGATTTGTTTGCGTACTGCACAGTTGGAAAATTTTTGTCTGGTATGATTTTTGCTGCTACTATGTTCTATAGCTTTGACATTTTTGTCAAAATGCTATAAGCCTTATATAAAACCTTTTTGGTGTAGAAAGTGCACTTTTCCTCGTGATGTGTTTTGGCTAAGGAGTGAGATAAATATTTACCAAAATTGGTGCAGTCCAAAATACTATTAGACAGTTGCTGGAATTTTAAGTTCCTAATATTAGATCTCTTTGCAGGGTAATGACTGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATGAAGGTACTTCTATATTCACAGTTCATTCTTCTTTTTGTTCTCTAGATTTTTCTTTTTACGTCGAAAACCTAACATGAGCTAATCTCTTACGGGCTCACTTGAATATCATTGACTTCTATGTGCTATTTATTATTGTGACTGTACCTTATTCTACGATCCTCTTGGATATATAGAGATTAAGACCTAAGAAGCTTATTTATTCAAAATATAGAGGCACATTGGTTCCTACATCTTTGTTATAAAAAAAAGAATCTTCCATTCAGAAAGAGATTAACGAGTTTAGAGATTAATACTTAGGAGAAGAATCTTTGAAATGTCAAAACTTGAAATGGCTAAGAGGATGTTATATCAAGCCCTTGGGGGTGGCTCTTAGTCAGAGAGTTGGAGTAACAATCTTAAGGACAAAGGTTCGAATCCCAACAATGGTGACAAGAAATGATTTATTTCCATCTGCCGAAGTATTGATAGTTGTATTGGTGGAAGTTATCATGCATTCGATAGATGTCAAAGTGCATCAGACATCAATGTTGTAAAGTAAAATGTCATATCAAAATTTGAAAAATATATAACATAGTTAGTGTATAAATTTGGATATCTTGTGTTTTCCTTCAAGCATGAAGGTGAAGTAATTTGTCGCCAAAGAAGTAAAGTGGCAAACGGAGTAGTTGCTCTAAAATATAGGGAAAAGGCTCATAAATACCCAACCAATGAGCAAAGGCTCATACATACCCCTCTTCCACCTTTGGGTCTAAAAATATCCTCAAGGTTTATATGTGGACTTAATATCCCTCAAAGGCTCAACCTAACAGAAATATTCAGGTCAACTTTAACTCTTTAAAAAGCCACATGTCATGTCTAATTGGTGCCACATTTTGATTCACAATAATTAAAACCCACCCAATTTCTAACCCGTTTTAACCCTTATATTTCACCCACAAAATATAAGGTAGCTTGTCATAGAAACTAATATCAAGGCAAAGAGTTTGGAAAAGGTATTCAAATTTCAGAGAACTCAGCCATTTAGGAAATGAGTCAAAATTATGAGAATAATTGAAAAGGAAATTAGGTCATGTGTGTGTGTGTGATTGAACATTGTTGGTTGTCCTCTTGGATGTAAAGTAATTATTGATATCTTTACTACTGATCTTTTTTTTTGAGAAAGGGGTAAGTAATATCTTTTGTACTAATCCAAGGTTTGAAAACAGAAACATTGATACTTCTCTAAAATCAAGATATGCAGCTTTGTGTACACCTTGTATGCAAGATCTTTTTCCTCCTCATTAAGGAGTCGTTTTGTTTAGAAGCAAGTTATGTATGGATTAGCAATGCATGGATTGTAGTGTAAGGTAATACATGAATTGGTGATACAAAGGATTGTAATGTAGGTATTAGTATTGATAGTTATATAAAGGATGGTAATGCAGGATTTATAATACAAAGATTGACTCTCAATTATTGGCTTTTTAATTGCTACTCCCAGCGTAGGGCAAAATTGAAGTACATTTGTAGCGCAAGAGCATCTGAATTTCATTTTTGCTCTTGATAGTGTAAATTCATCCTTTTTGATGGAACTCCTGCCCCTCTTATGAACACCTCTAGATTTGCTTACCGTGGTTTTATTCTGAAGGATACAGGGGAAAGAGATGGAAGATTCTATTCCATAAATGTG-CCTCTCAAGGATGGA</genome_strand>
        <mrna_strand>AAAATCTCCTACTTCTACGACG........................................................................................................................GTGATGTTGGAAGCGTATACTTTGGTCCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCTTATGGTCTTCACAGCAAGATGGAAGTTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAATTCTTGAACAGAATAACCCCAGAAACTCAGAACTTGTTCCCTAGTGAAATGGCAAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGAACAATAG......................................................................ATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGATTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTAAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCACGGTGATGGTGTAGAAGAGGCCTTTTATTTTACTGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGACCGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGGGAAAGAGATGGAAGATTCTATTCCATAAATGTGCCCTCTC-AGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E449739" ref_strand="+" ref_description="SGN-E449739 	[cSTS-7-I22]">
      <seq>aaaatctcctacttctacgacggtgatgttggaagcgtatactttggtccgaatcatccaatgaagccgcacaggttgtgtatgactcatcatctggttctagcttatggtcttcacagcaagatggaagtttataggcctcacaaagcatatccagtggagctagcgcagtttcattctgctgattatgtagaattcttgaacagaataaccccagaaactcagaacttgttccctagtgaaatggcaagatataatcttggagaagattgccctgtatttgacaacttattcgagttttgtcaaatatatgctggtggaacaatagatgctgcacgtagattgaataataagctttgtgatattgcaataaattgggctggtggattgcatcatgccaagaagtgtgcggcttcaggattttgctatatcaatgacctagttctggggatattggagcttctaaagtatcatccgcgggtgctctatattgatattgatgtgcatcacggtgatggtgtagaagaggccttttattttactgacagggttatgaccgttagtttccacaagtatggggataagttctttcctggaactggtgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="39822" stop="43118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40122" g_stop="40143" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40144" i_stop="40263" i_length="120">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40264" g_stop="40376" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="135" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40377" i_stop="40783" i_length="407">
            <donor d_prob="0.381" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40784" g_stop="40901" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="253" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40902" i_stop="41737" i_length="836">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41738" g_stop="41812" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="328" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41813" i_stop="41882" i_length="70">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41883" g_stop="42102" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="548" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42103" i_stop="42757" i_length="655">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42758" g_stop="42818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="609" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E449739" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40122" e_stop="40143"/>
          <exon e_start="40264" e_stop="40376"/>
          <exon e_start="40784" e_stop="40901"/>
          <exon e_start="41738" e_stop="41812"/>
          <exon e_start="41883" e_stop="42102"/>
          <exon e_start="42758" e_stop="42818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCTACTTCTACGACGGTAAGAGTTTTCTCTTTTTCTCCTTTTTCACTTCACACTGGAGAAATCACAAACCCTAGGTGTTGTTCATTCTGTATGCGAGTGTTTATTTTGTTTATGTAAGCTGAAATTTTGTTGCAGGTGATGTAGGAAGCGTATACTTTGGACCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCTTATGGTCTTCACAGCAAGATGGAAGTTTATGTTTGTTACTCTATCCTTTTCTCTTTTGTGAATGTGAAGTTTTCCGTTTTTTAAGAGTTAATGGTAAAAAACACATTTTTTTAGTTTCATACATGAGTTATGAGGTACGGCCTAATAGTATCCTGTTTTTTCAAGTTTCATACTTGAATTATGAGGTATGTGAGGTTCCTACGAGAATTATCGCCAACTATTTATCTAAACACAATCAGCTATCAGCTGTCCCTTCGTGCCTGAAATATCACCATCATTCGGGTGTGTTTTGGGAACAATTAATAGTTGAGGTATTACTGGTAAATAGTTGGTGATAGTTCAGATATGAAACTTGAATTCAAGTGTGTTTTTGACCCTTCGATCTTTTTCTTTTACTTTACTATTTTTGGTTTACCTTTTTTGATTGAACTGTGTAGAGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAGTTCTTGAATAGAATAACCCCAGATACTCAGAACTTGTTCCCTAGTGAAATGGCAAGATGTAAGTGTTGAACATTGTCTTATTTTTATCTCTTTTCCTTTGAAATATCATCTTTGAGCTGCATACTTATTGATATGAATCTAGCTTGTTCTAGTACTTGTCGTCTTCGAAAAAACAAGGATGCCACCACCACCAACAGCTACACCTAAATCCGAAGCTAGTTAAATCCTCAGTATTCATGTTAATACACTTAGACTTGTCTCAATGAATATTGAAAAATTAGGTTCTTTAGCACAAAACTAGAGAATTTACGAACATTCCTAGATCACATATATGAATGTTTTCATGTGCTCTATTAACTGTCTTAATGGATTTCTAGAGATTGAAAAGGCGGGGGAGGGGGGGGGTATGCGGAGCATATAGAACAACAATTACCTCCAACCCAACTACTTTTTTATTGGTAAATAAGTTTCATTGTTTGCAGCACTAAGAGAGTGCTAAATATTACAACAACGTACGGAAGTAATCCCTTCTACTAATTCTGGTACCTAATGATTATATCAGTTTGACAACTTCACATGTGTATTCTGAGTTACATCAAGTCGCCATCAAAAATGTATATTTTGATTTCATCCTAATTATTGTCAGCTTTTCCTTTGTACTGTCTCTAGTTTCTCTCCTTCCTTTTTTTCTGTACATGTCTTGGTTTTTTGGACTTTCTCCGACTTTTTTTGTATGATGAATAGGTGTAGTTAACAACTCACTATAAGATCAAAATGGAAACTAATTTTGATATCATAATTTTCTAAAGAGTATGCTTTTTGGCATCACGTCTTTTTAGATGATTTGTTTGGATAATGTGATGTTGAACTATTGCTTATCTGTTTACTTATCAGATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGGACAATAGGTAAAATTGGCCTTTAACATGCTATTACTGTTGAGTCTCAAATCACTTGCTAACAAAGATTTAGTGGCAGATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGCTTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTGAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCATGGTGATGGTGTAGAAGAGGCCTTTTATTTCACTGACAGGTGGAATTATTTTCTGTAGTTTTTCTCCAATTTTTCCTTTTTCCTTCTCTGTTTTTTCTTTCTCTAATGTTAAACCCGAGGATAAATTTTAAATCAATATGAAGGCTTAAAGTAGTAGCTAGTGAGTCTAGAGTGAGACTCCGAGAACCTGAATGATGATCAACTTTGCCAGTAAGAAATCTGTAGTGAAATTCTTTATACTACTGTAGATGTGACCTCTCAGAAGCATCTTCGTCTTACCCTCGTATTATCTGTGTCATGCATAGGAATAATTAAAGTGTCACATGTTCACTTGATTATTAAATTGCTGTTTATTCAGTAGCTGTGACAATGAAGCTTCCACCTTGGCACCAGTTGAATACTTCAATTTTTCAAAAAAAAATTGGCTTCTAACCAGTTGATTTGTTTGCGTACTGCACAGTTGGAAAATTTTTGTCTGGTATGATTTTTGCTGCTACTATGTTCTATAGCTTTGACATTTTTGTCAAAATGCTATAAGCCTTATATAAAACCTTTTTGGTGTAGAAAGTGCACTTTTCCTCGTGATGTGTTTTGGCTAAGGAGTGAGATAAATATTTACCAAAATTGGTGCAGTCCAAAATACTATTAGACAGTTGCTGGAATTTTAAGTTCCTAATATTAGATCTCTTTGCAGGGTAATGACTGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATG</genome_strand>
        <mrna_strand>AAAATCTCCTACTTCTACGACG........................................................................................................................GTGATGTTGGAAGCGTATACTTTGGTCCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCTTATGGTCTTCACAGCAAGATGGAAGTTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAATTCTTGAACAGAATAACCCCAGAAACTCAGAACTTGTTCCCTAGTGAAATGGCAAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGAACAATAG......................................................................ATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGATTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTAAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCACGGTGATGGTGTAGAAGAGGCCTTTTATTTTACTGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGACCGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E313984" ref_strand="+" ref_description="SGN-E313984 	[cTOA-19-O14]">
      <seq>tccaaagtgcttgcatccggcatcagattggtgtgttgatgactgcacaccatgcagatgaccaggcagaactattcattcttaggttatctcgcagtagtggcgtgcttggactcgctggaatggcatctgtttcagagctgttttttacatgtccagatttaagtgctgaagtgagtagcaatggacttttattggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="52879" stop="51863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52579" g_stop="52515" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52514" i_stop="52300" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52299" g_stop="52163" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="202" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E313984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52579" e_stop="52515"/>
          <exon e_start="52299" e_stop="52163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAGGTATTAATAGCATTTACTCTCTGGATTTTTGTATTTTGTCTCTAAAAACTTAGCACTTATAGATGGCAATCTGTTTAGTTTTGTCAATACATTAAAAAGAGCTAATGGTATTTGAATACAATTGATGTTGCGCTCATGCAAATGTAAGTTGAACATTATTGCTTTTGACAACATTGTTGATAGTTTTAGCAATTGCTAATCGGATTACTCTACAGGCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</genome_strand>
        <mrna_strand>TCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG.......................................................................................................................................................................................................................GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E315346" ref_strand="+" ref_description="SGN-E315346 	[cTOA-24-H16]">
      <seq>tcaatggcgcgaggcttcttgatttctacacaaaccaaaaattcttcacattttcttctaaactccatttctgaaacttcaagattaactaaattaccctattacccttcttcatcatctctccgtttctctctttcacctcctccttctccacctcggtttctgtgcagttgttgcagtcacttccaagaaaatggcacaattgacatgtcagtacactcagaggcatttgcaaagcgtatggctatggtgggtctcaaaccccatcatcgtattggttttgcagttataaaatatcaaatccaattctgggcgtttctggtggccctgatagcatggccctctgtgtcttaactgctgcatggaaaaccaataaccttggtaatgctgctcaaaagaatgagtttgttgacgggcttttagcagtggtagttgatcatggacttcgtgctgagagtaaagatgaagctcaccttgttcatcgtcgagtcacaagcatgggaatcaaatgtgagattgtttgctgtgaatggtcagaaggcaagccaaagcagggtcacttgcaagaagctgctcgccagaagaggtatgaaattctccaaagtgcttgcatccggcatcagattggtgtgttgatgactgcacaccatgcagatgaccaggcagaactattcattcttaggttatctcgcagtagtggcgtgcttggactcgctggaatggcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="54817" stop="51932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54517" g_stop="54241" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54240" i_stop="53261" i_length="980">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53260" g_stop="53232" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="306" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53231" i_stop="53124" i_length="108">
            <donor d_prob="0.064" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53123" g_stop="52929" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="501" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52928" i_stop="52836" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52835" g_stop="52751" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="586" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52750" i_stop="52591" i_length="160">
            <donor d_prob="0.405" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52590" g_stop="52515" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="662" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52514" i_stop="52300" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52299" g_stop="52232" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="730" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E315346" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54517" e_stop="54241"/>
          <exon e_start="53260" e_stop="53232"/>
          <exon e_start="53123" e_stop="52929"/>
          <exon e_start="52835" e_stop="52751"/>
          <exon e_start="52590" e_stop="52515"/>
          <exon e_start="52299" e_stop="52232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTGGTAAGTTTTACCCCTCCATTGTATTTTTATTTTTATTTTACTTTGTGGATACAAAGAAAGAAGAGCTGAAAGTGAGAAAAAGATTGCAGTTTTATAGTATAGTCGTTTATTCTTTTTGTTATAGTGAAATGCTGATACTTGCATCTTCATGGAGGATTCAATTTTACCAGGTCCATGTTGGAGATATTGTATAAGATGAAAAAATTGGTTTAGATATGTGTTACAGGAGTTGAGGGTCTATTGGAAACAGTCCTTTTAACTTCATTACTAAGTCTCTGTACGGACCACCCTTCTCAGACTCCACTTGTGGGAGGGATTACACCGGGAATGCTGTTGTTGAAAATATTTGTTTAGAAAAAGACTTGGTGTTATAATGAAATGTTGTTATAGATGATGATGTGGAGGTCTCAGTGTACCTTTTTTCATTGGTTTGAAAAGTGGTTTGCATGAGTTAAAAATCTTAATATCATGAGAAGCTATTTTACATGTTTCATGGGATGATTAGTACTACCCCATTCCTAATCAGAAGTTTCTGATTTGAGTTTGGGGAATGGAGCTGTGTTTAACAGGGAGCTTTTTAGCCCAAGTGGATAAAAGATTGCAACTTTGTATAGTACCCTTTACCGTCCATTTGTATATTGGTTTGCTTTACTTAAAAATCTCAATATCATGAGAAAATGTTTCATGTGTTCCATGGGATGATAGGTACCCATCCATCTTTAGCCAGAGGCTTTAGGTTTGATATTTGTTAATGGAGTCCCCTTAAAGAGGGATCTCTTTATCCGAAAGTGGATAAAAGGTAGCAGCTTTATAGTGCCTTTTCGTCCATTTTGTTATTGATTTGCCTGACTTAAAAATCTGAAAAGCATGAGTTTTTGTTTTATGGATTTTCAATTTTCTTGTTATGTAATATAGCTTACAAAGAATTGCCCAAGGAAGAAAATTACAGCTCATGATTTATTTTTCTCTTTGATTGGTAGGTTTTGCAGTTATAAAATATCAAATCCAAGTAAATTTTCATGTTTGGCTATTCTCTCTTTAACGACTATTAGATTAAAATTTCAAATTCCAAGTGTGGTTTTGTGGTGACCATGATTCTTCTTGACCTTTTTTGTAGTTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGGGTATATATGTTCCTTTTAACTTCTTCTTTATCATGAATGTAGCAACATTGCTTAATACCTTTTTAATAGAGATATAATGTAGGCCTTGTATAGGAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAGGTCATTACCAGAGTTTCAAATCATCTTCAGTGAAATGCTATTTCAGAGCCTTGTCATATCTGGTTATGCTGGTTTTTTGACTGACTATGTTATACATTCATCCTGATGTTAATATGTCGTCATTATTGTGAGTAAATAAGTTGTCCCTCGTCTTGTTCAGGTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAGGTATTAATAGCATTTACTCTCTGGATTTTTGTATTTTGTCTCTAAAAACTTAGCACTTATAGATGGCAATCTGTTTAGTTTTGTCAATACATTAAAAAGAGCTAATGGTATTTGAATACAATTGATGTTGCGCTCATGCAAATGTAAGTTGAACATTATTGCTTTTGACAACATTGTTGATAGTTTTAGCAATTGCTAATCGGATTACTCTACAGGCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGT</genome_strand>
        <mrna_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCAGTTATAAAATATCAAATCCAA............................................................................................................TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG.............................................................................................GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG................................................................................................................................................................GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG.......................................................................................................................................................................................................................GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E347473" ref_strand="+" ref_description="SGN-E347473 	[cTOF-33-B4]">
      <seq>tgtcattcacagaaatgttctaacatagagtagaatcgaacatgtaaagagatacattgacagcagaaaagatgagttgattattgtaaacatgaactgttttcagctgactgtggcatgcataaaaatgaagaggcctgaaatagctgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaactnctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcatactgtgttgntacctaaagcttttgtataggtactatatatctgcgcgatatacatactagtgttgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="58252" stop="59480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58552" g_stop="59180" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E347473" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58552" e_stop="59180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATT</genome_strand>
        <mrna_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTNCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGNTACCTAAAGCTTTTGTATAGGTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E352558" ref_strand="+" ref_description="SGN-E352558 	[cTOS-9-L11]">
      <seq>tgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaacttctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="58399" stop="59409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58699" g_stop="59106" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="424"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E352558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58699" e_stop="59106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGC</genome_strand>
        <mrna_strand>TGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E416317" ref_strand="+" ref_description="SGN-E416317 	[STM-22-L8]">
      <seq>gtgatccttactgggacgccattacacgtggtatttccacttctacttcttcggcaatttctctaactgatctccgatttctccatcgactaggatccggcgatataggctctgtcttcctcgcagaaatcaaagctgctcctgtaacggagatttcgaaatcgacggcggtatcggcgtactttgctgcgaaagttatggataagaaggaacttgcgagtcgtaataaggaaggaagagcgaggactgaacgggaaatacttgaaatgttagatcatcctttccttccgacgctttatgcttctattgattcaccgaaatggtcgtgtttgttgacggagttttgccccggcggtgatctacacgtactccggcaacgtcaaccggcgaaacgcttccctgaatccgctgtcaggttctatgtgtcagaggtggtggtagcgttggagtacattcacatgatgggaatagtttaccgcgacttgaaacctgaaaatgttttggtccgatcggatggtcatatcatgctcacagactttgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="74486" stop="79483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74786" g_stop="75201" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75202" i_stop="79052" i_length="3851">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79053" g_stop="79183" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="546" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E416317" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74786" e_stop="75201"/>
          <exon e_start="79053" e_stop="79183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAGGTACATTATTCTCTACTCTCATAGTACATATGAACTATACACATCAACTTCAATCAATACTAATTTTGTTATTCGTGTTATCAAATTAGCTACAAAGTTCATAACTAATTTACTTTTTTTGATATTGATGTTGATAGTGACAAAACTAAACATTTTCACTAACCAATTCAAAAAAATACTACTCTCTCTTTCCATTTTATGTCATACTTTTTTCTTTAATCGAGTATTTGCGTATGAAATTTTTAAATTTTTTAAAATAAGCACAATAATTGATTAATCAAAATGTATAAAAAGACTTAAGTCTACGAATAAATTTATTTGAATCTCAAAAATGCAAAAAAGCAATACATGAAAAATGAAACAAAAGAAATAGTTATGTATAAGTTTTGATTAAATTCGAATGAATTTTTCGATCCTACCTTTATCGTTTTGCTCCTGTGGGGTCCACCAGGTGGTGTTGGAGCTGATAATTTGTCAGTATTATGGTTCCATCTAAGTTGGTCAGTGTCATTTTCTTCTTCTTTTCACTTTGGCCACACTGGATCTATGGTGGACTTGTGCACACTGGATCATTGATTAAAATGGTAATTAATTAGGAAAGATAATTAGAAAATTATGATTAGTCTAATTTATTATTATAAGTTGTGATCCACACGTGCTTAGTATTATGACTTCTATACTTAAAAGTCAAAGTTTAACTTACGCGCCATATGAAATTAAGTTGTTCGAATCTTTAAAAATGTTATTATTTTTATGATAAATTATAAAAAAAAAAATGTGAATTTGAATTAATCAATTTTAAAAGCATAATGATTTTTTAGGAAAAAAGAACTTGTGTGTTATAATTGTTTTGGGATTTATTTATTATGGTTTAGTTGGAGTGATAGAGCTTTTAATGATCATGATAGGAGTGGGCTATATTACTATTTACTAATCAATCAATACATATTTCATTAATTTTTTTAATAGTTGACTTGATGAGGTGCATGTGAAAAAGGAAGGAGCTAATCACCTCTCTAGTCCTTTTTTTAAAAGAATATATTTCATACTAAAATTTTATAATATCAAAGTGAGTTATAAATATGCGATGAGATAAATAAGAATATTTATAAATAAAATATCTCGCCTTTTATATGGATACCATATAGTATTCTCATTATTTTATTTTAATATAAATAGTGAAATAAAATGATTTTGAAATTAACCAACACTTCAAATCAAATTTTTAAATTTGAAAAATATTAATTGATGATATATTTCACTACAAGTATATTTGATTTGGAGTATTTTTTTTTCTGTTTTAAACTCTACCTTCACTCTGTTACTAATATGTTTTTAGAGACTTTCACGAAATAGAGATAAAATCTTTATATACTTTACTTTCTTATCATTTATCAATTAAATTTGTGATTATTATTTGTTATCACACTCGAAAAGAATGAACATGGAGTCACTAAAGTTTTGAGTTGTGTAGATTTTAGGTTTTTTGATTGATGTTTATGTGTTTATATTGAGATTTAATTAAATTTTAGATTATAATAGTAATAATTATATTTTTCTAAAAAAAAAGGTTTTTAACAAAAATAATTATTTTCAATTAAAGATCACTCTAGACTAATCTTCGTTGATATTATGTGGAATCGAATTCGAAAAGATTTTTACCTTCTTTCTTAAGAAAGATAGTCTTGGAAGATTCTATATAAATTTATTAATGAAATCAAGATAGTTAATTCTTCAAATATTTAAATTCTATTTTTGGTAATTGAGTCCAAAGTTAATTTGTCAAACAAACTTTTTAAAATGTAATACTTTTCCAGTTATCATTCCCAAAATTAAGGGGAATAGTCTTGCCTTGTAACTTTTCCTTAATATAAGGAATTTGGAATTTTAATTTTGAAAACTATTTTTTTCTTATTAATATATATTCTTTACCAAAGTGGTCCCTTATTATATTGCAATAAATTGATCTATATGGGAGGCCCCTGTATATATATATAAACTATTCCTATAATTGACAAATATGCCATGTTGGTACACAAGTTATACAGATAATCACAACCTATCTAGACCAAAAATAATAATATGGCTAGAAGGAAACTAGTAGAAATGATTCAAATTTAATTTCTCTAGCTTTTACTTTAGAAGTAGTTTTTGATTGAGCAGAAAATCCTGTTCTCAAGATTATTACTTTTTTTGACTTGACATTTCACTGCCTACATTTGGATTTTTATGATTTGGATGGACCTCTCTTTTGATTATACGATCCCTTGTGACACATGAAACAAAAAAAAAGAAAAATCAGATAATTTTTTATATTTTTATAAATCATTATGTTTAGACAGTTTATACGTATTTTAATTAATTATATAGAATATTTGTTACCTTATATCGATTAGATAGTTAGTAAGTAGTCGAGTAATTTCTCCCTTGTCAGTGGTAGAGCATGGTCATAGTCTGGAGTAACATCATCACTACAGTTCTTCCTTTTCTTTTTTTTTTGGTTATCAATATGATTTCTACTCTTTTTCTTAAACACAATTTTTCTTAAAGTTGAGGGCTTCTGAGAAATAATCTTTCTACCTCCACAAAGGTTAGGATAAGGGCAACGTACTTCCCATCCTCCCAAGACCCACTTATGAGATCATAGTATATTATACCAAATAACTTTGTCGGTCAAACTTGTACTAACCAAAAGATCAACAATTCACACCTAAAATAGTAGACGTAAAATAATGTCTCATAATAATTTAATTCTTTGTCAAAATGCAATACTACCTACTGAACTAATCAGAATTATTGGGGGTACATAGTCTTTCCCTTCTTGTTTCCCATGTTCATTGTTTTGCCTACAAAGTACAAGGATATATTTTGCATATAAAGATATGCCCTGTTTGTGTAGGCCATACTTTTCAACTAATATGTGGGTGAGTTTATTCTAATATACTTGCATTATCTTTTCAATTTGCTCATTGTCTACCTAGATAGTCGATATCCTATCCTAGTGGGAGATAACATATACCTCGTGGAATTAGTTGATGTTTGTGCTCATGTTAATTCGGACAGCTGTTATTATACTTGATTCATTTACTTTGTTCGTCTTCCTATTTTGTTATCGTTATTTTCCTTGTGTCTATCAAAAACAACCCTCCCTATCCCATAAAGGTAAGGTTAAGGTATGCGAAGAAAACCTTTCTCAGAGATAGCACTTGTGAAAATCCTTGGTATTTTCTTCTTTTATGGATATCCCACAAACTTTTTTTTTTCTCATTTTAATTAATCTAGTACAAAATGTAATGATGTTGCACTTGTGGAAAGCAACCAAACGAAGAGCACAAAAAGGAGAAGAGGACAGTAAAGTTGCGCCATGATATAGGGACAATGTTTCAAGGACCTACTTTTTTAATCTTGCTACGTTGCATGGGGAAACAATTAGGGGGGCCAGCATATATTCCACAAACTAAAGTATAGAGTAGTTTTGCTATCTTTAAAGAAGCATATTGGTCCCCCTCCCCATATGATAAGAGTTGAAACAAACTTCTTTGTGCAGCCGTGAGGTCTTGGATCCTCCTTGGTTTCGAACCTTAGCATGAAAAAAATCTTGCTCGGGAGCACTTTCCTATTTAATCATTCTCGTGTGTCTCAGAATCAATACAAATATCGAATACTAGATAAAAAAGTGGGCGTTAAAAAGTTTTGAGTCATAAAGTTCTTGCTTCATTTACTATGGTTCTTTTCTTTGTTCCCTCAGATGCTTCCATTAGTCTTATCTTCTTGTGTTTAACTTTTTACATTTCGAATCTCCTTAGTGAAAATCCTCATGTTACCACTTGCTAATCTCATGGTATCTACAGGTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCT</genome_strand>
        <mrna_strand>GTGATCCTTACTGGGACGCCATTACACGTGGTATTTCCACTTCTACTTCTTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGACTAGGATCCGGCGATATAGGCTCTGTCTTCCTCGCAGAAATCAAAGCTGCTCCTGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCTGCGAAAGTTATGGATAAGAAGGAACTTGCGAGTCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCGACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTGTTGACGGAGTTTTGCCCCGGCGGTGATCTACACGTACTCCGGCAACGTC-AACCGGCGAAACGCTTCCCTGAATCCGCTGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATGTGTCAGAGGTGGTGGTAGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCGGATGGTCATATCATGCTCACAGACTTTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E438750" ref_strand="+" ref_description="SGN-E438750 	[cSTA-9-O14]">
      <seq>gccaggacatcttggtggccctgaatttgtagctgaaccagtcgatgttcgttcaatgtccttcgtgggaactcacgagtacttggcaccagagattgtatcaggtgaaggtcatggtagtgcagtagattggtggacactagggatattcatatttgagttgctatatggagtaacaccttttaaaggtatagatcatgaactaaccctagctaacatcgttgctcgagccctcgaattccctaaggaaccatcaatgccagccccagttaaagacctgatatcacaactccttactaaggatcccgcgcgaagaatgggatcaactatgggtgctacagcaatcaaacaccatccattctttcaaggagtcaattgggcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79076" stop="80060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79374" g_stop="79760" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E438750" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79374" e_stop="79760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGGACATGCTGGTGGCCCTGAATTTGTAGCTGAACCAGTCGATGTTCGTTCCATGTCCTTCGTGGGAACTCACGAGTATTTGGCACCAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTGAGTTGCTATATGGAGTAACACCTTTTAAAGGTATAGACCATGAACTAACCCTAGCTAACATCGTTGCCCGAGCCCTCGAATTCCCTAAGGAACCATCAATGCCAGCCCCAGTTAAAGACCTGATATCACAACTCCTTACTAAGGATCCCGCGCGAAGAATGGGATCAACTATGGGTGCTACAGCAATCAAACACCATCCATTCTTCCAAGGAGTCAATTGGGCACTTCT</genome_strand>
        <mrna_strand>GCCAGGACATCTTGGTGGCCCTGAATTTGTAGCTGAACCAGTCGATGTTCGTTCAATGTCCTTCGTGGGAACTCACGAGTACTTGGCACCAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTGAGTTGCTATATGGAGTAACACCTTTTAAAGGTATAGATCATGAACTAACCCTAGCTAACATCGTTGCTCGAGCCCTCGAATTCCCTAAGGAACCATCAATGCCAGCCCCAGTTAAAGACCTGATATCACAACTCCTTACTAAGGATCCCGCGCGAAGAATGGGATCAACTATGGGTGCTACAGCAATCAAACACCATCCATTCTTTCAAGGAGTCAATTGGGCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E438748" ref_strand="+" ref_description="SGN-E438748 	[cSTA-9-O10]">
      <seq>gccaggacatcttggtggccctgaatttgtagctgaaccagtcgatgttcgttcaatgtccttcgtgggaactcacgagtacttggcaccagagattgtatcaagtgaaggtcatggtagtgcagtagattggtggacactagggatattcatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79076" stop="79831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79374" g_stop="79531" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E438748" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79374" e_stop="79531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGGACATGCTGGTGGCCCTGAATTTGTAGCTGAACCAGTCGATGTTCGTTCCATGTCCTTCGTGGGAACTCACGAGTATTTGGCACCAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTG</genome_strand>
        <mrna_strand>GCCAGGACATCTTGGTGGCCCTGAATTTGTAGCTGAACCAGTCGATGTTCGTTCAATGTCCTTCGTGGGAACTCACGAGTACTTGGCACCAGAGATTGTATCAAGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E594462" ref_strand="+" ref_description="SGN-E594462 	[37714]">
      <seq>cagagattgtatcaggtgaaggtcatggtagtgcagtagattggtggacactagggatattcatatttgagttgctatatggagtaacaccttttaaaggtatagaccatgaactaaccctagctaacatcgttgctcgagccctcgaattccctaaggaaccatcaatgccagccccagttaaagacctgatatcacaactccttactaaggatcctgcacgaagaatgggatcaactatgggtgctacagcaatcaaacaccatccattcttccaaggagtcaattgggcacttttaagatgtacttcaccaccattcattcctcctccattcagtaaagaatttctctctgatggaagttgccctgatacctcaatggaatattactagcctctatcattcagaagaagcaacatagctactactaactagtgtgaataaagactcaaaaaagtcaaaatttttggaccaggtaaaaatgcaagaagaagtgatttgtggtggacttttcttggatgttattcaatattgacccnacaatatgaatatgaggctatatgaatacaacaaagacagtagttttcgtagtagtatgctagccaatgctctattgtacattggctattattataggtggacaaaagaaaggaggttcattttctaaatcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79163" stop="80466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79463" g_stop="80163" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E594462" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79463" e_stop="80163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTGAGTTGCTATATGGAGTAACACCTTTTAAAGGTATAGACCATGAACTAACCCTAGCTAACATCGTTGCCCGAGCCCTCGAATTCCCTAAGGAACCATCAATGCCAGCCCCAGTTAAAGACCTGATATCACAACTCCTTACTAAGGATCCCGCGCGAAGAATGGGATCAACTATGGGTGCTACAGCAATCAAACACCATCCATTCTTCCAAGGAGTCAATTGGGCACTTCTAAGATGTACTTCACCACCATTCATTCCTCCTCCATTCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATT-GCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTT</genome_strand>
        <mrna_strand>CAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTGAGTTGCTATATGGAGTAACACCTTTTAAAGGTATAGACCATGAACTAACCCTAGCTAACATCGTTGCTCGAGCCCTCGAATTCCCTAAGGAACCATCAATGCCAGCCCCAGTTAAAGACCTGATATCACAACTCCTTACTAAGGATCCTGCACGAAGAATGGGATCAACTATGGGTGCTACAGCAATCAAACACCATCCATTCTTCCAAGGAGTCAATTGGGCACTTTTAAGATGTACTTCACCACCATTCATTCCTCCTCCATTCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAATGGAATATTACTAGCCTCTA----TC--A---TTCAG--A-A--GAAGCA-AC--AT-AG---CTACTACTAACTAGTGTGAATAAAGACTC-AAAAAAGTCAAAATTTTTGGACCAGGTAA-AA---ATG--CAAG-AAGAAGTGATTTGTGGTGGACTTTTCTTGGATGTTATTCAATATTGACCCNACAATATGAATATGAGGCTATATGAATACAACAAAGACAGTAGTTTTCGTAGTAGTATGCTAGCCAATGCTCTATTGTACATTGGCTATTATTATAGGTGGACAAAAGAAAGGAGGTTCATTTTCTAAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E539339" ref_strand="+" ref_description="SGN-E539339 	[TUS-59-A20]">
      <seq>tttttttttttaataaataccatgataattatttatgtggaaaatatttttatgtaatttatgaaattcacaaggcacccacccatgactagctactaccctacaaccttacaagatcctaataattaaacaaatcacatggaaacatcatgcttttccacaaggaaaagaacaagattagcaaaaacatgatgctgacccatattcttgaccttccaccacccaaccaaatccttcacacaaccaggccctttgcttgtgtaacaattgtctacatgtattttgtcaggatccaatgttttagacaaaggcattgacttataaaagatttagaaaatgaaccttcctttctttgtccacctataataatagcaatgtacaatagagcattggctagcaaacaacaacaaaaactaatgtctttgttgtattcatatagcctcatattcatattggtgggtcaatattcattaagatccaacaaaagtccaccacaaatcacttctttcttcttcttccattcttttctggtccaaaatttttgactttttttgagtctttattcacactagttagtagtaggatctgatacgagtgcaacaatatttctgaagagtctgagggatataggctagtagtattcaactgaggtatcagggcaacttccatcagagagaaattctttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="80777" stop="79496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80478" g_stop="79796" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="690" r_length="683" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E539339" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80478" e_stop="79796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAATAAATACCATGATAATTATTTATGTGGAAAATATTTTTATGTAATTTATGAAATTCACAAGGCACCCACCCATGACTAGCTACTACCCTACAACCTTACAAGATCCTAATAATTAAACAAATCACATGGAAACATCATGCTTTTCCACAAGGAAAAGAACAAGATTAGCAAAAACATGATGCTGACCCATATTCTTGACCTTCCACCACCCAACCAAATCCTTCACACAACCAGGCCCTTTGCTTGTGTAACAATTGTCTACATGTATTTTGTCAGGATCCAATGTTTTAGACAAAGGCATTGACTTATAAAAGATTTAGAAAATGAACCTTCCTTTCTTTGTCCACCTATAATAATAGCAATGTACAATAGAGCATTGGCTAGCAAACAACAACAAAAACTAATGTCTTTGTTGTATTCATATAGCCTCATATTCATATTGGTGGGTCAATATTCATTAAGATCCAACAAAAGTCCACCACAAATCACTTCTTTCTTCTTCTTCCATTCTTTTCTGGTCCAAAATTTTTGACTTTTTTTGAGTCTTTATTCACACTAGTTAGTAGTAGGATCTGATACGAGTGCAACAATATTTCTGAAGAGTCTGAGGGATATAGGCTAGTAGTATTCAACTGAGGTATCAGGGCAACTTCCATCAGAGAGAAATTCTTTACTGA</genome_strand>
        <mrna_strand>TTTTAATAAATACCATGATAATTATTTATGTGGAAAATATTTTTATGTAATTTATGAAATTCACAAGGCACCCACCCATGACTAGCTACTACCCTACAACCTTACAAGATCCTAATAATTAAACAAATCACATGGAAACATCATGCTTTTCCACAAGGAAAAGAACAAGATTAGCAAAAACATGATGCTGACCCATATTCTTGACCTTCCACCACCCAACCAAATCCTTCACACAACCAGGCCCTTTGCTTGTGTAACAATTGTCTACATGTATTTTGTCAGGATCCAATGTTTTAGACAAAGGCATTGACTTATAAAAGATTTAGAAAATGAACCTTCCTTTCTTTGTCCACCTATAATAATAGCAATGTACAATAGAGCATTGGCTAGCAAACAACAACAAAAACTAATGTCTTTGTTGTATTCATATAGCCTCATATTCATATTGGTGGGTCAATATTCATTAAGATCCAACAAAAGTCCACCACAAATCACTTCTTTCTTCTTCTTCCATTCTTTTCTGGTCCAAAATTTTTGACTTTTTTTGAGTCTTTATTCACACTAGTTAGTAGTAGGATCTGATACGAGTGCAACAATATTTCTGAAGAGTCTGAGGGATATAGGCTAGTAGTATTCAACTGAGGTATCAGGGCAACTTCCATCAGAGAGAAATTCTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E539342" ref_strand="+" ref_description="SGN-E539342 	[TUS-59-A20]">
      <seq>tcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatatttttcacataaataattatcatggtanttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79496" stop="80777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79796" g_stop="80475" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E539342" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79796" e_stop="80475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</genome_strand>
        <mrna_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTTCACATAAATAATTATCATGGTANTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E281779" ref_strand="+" ref_description="SGN-E281779 	[cLER-14-D19]">
      <seq>cagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79497" stop="80603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79797" g_stop="80303" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E281779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79797" e_stop="80303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTT</genome_strand>
        <mrna_strand>CAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E539349" ref_strand="+" ref_description="SGN-E539349 	[TUS-59-A24]">
      <seq>gatcccccgggctgcaggtcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattatagggggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79496" stop="80574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79800" g_stop="80274" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="497" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E539349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79800" e_stop="80274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGG</genome_strand>
        <mrna_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGGGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E539346" ref_strand="+" ref_description="SGN-E539346 	[TUS-59-A24]">
      <seq>aataccatgataattatttatgtggaaaatatttttatgtaatttatgaaattcacaaggcacccacccatgactagctactaccctacaaccttacaagatcctaataattaaacaaatcacatggaaacatcatgcttttccacaaggaaaagaacaagattagcaaaaacatgatgctgacccatattcttgaccttccaccacccaaccaaatccttcacacaaccaggccctttgcttgtgtaacaattgtctacatgtattttgtcaggatccaatgttttagacaaaggcattgacttataaaagatttagaaaatgaaccttcctttctttgtccacctataataatagcaatgtacaatagagcattggctagcaaacaacaacaaaaactaatgtctttgttgtattcatatagcctcatattcatattggtgggtcaatattcattaagatccaacaaaagtccaccacaaatcacttctttcttcttcttccattcttttctggtccaaaatttttgactttttttgagtctttattcacactagttagtagtaggatctgatacgagtgcaacaatatttctgaagagtctgaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="80770" stop="79561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80470" g_stop="79861" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E539346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80470" e_stop="79861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCATGATAATTATTTATGTGGAAAATATTTTTATGTAATTTATGAAATTCACAAGGCACCCACCCATGACTAGCTACTACCCTACAACCTTACAAGATCCTAATAATTAAACAAATCACATGGAAACATCATGCTTTTCCACAAGGAAAAGAACAAGATTAGCAAAAACATGATGCTGACCCATATTCTTGACCTTCCACCACCCAACCAAATCCTTCACACAACCAGGCCCTTTGCTTGTGTAACAATTGTCTACATGTATTTTGTCAGGATCCAATGTTTTAGACAAAGGCATTGACTTATAAAAGATTTAGAAAATGAACCTTCCTTTCTTTGTCCACCTATAATAATAGCAATGTACAATAGAGCATTGGCTAGCAAACAACAACAAAAACTAATGTCTTTGTTGTATTCATATAGCCTCATATTCATATTGGTGGGTCAATATTCATTAAGATCCAACAAAAGTCCACCACAAATCACTTCTTTCTTCTTCTTCCATTCTTTTCTGGTCCAAAATTTTTGACTTTTTTTGAGTCTTTATTCACACTAGTTAGTAGTAGGATCTGATACGAGTGCAACAATATTTCTGAAGAGTCTGAGGGA</genome_strand>
        <mrna_strand>AATACCATGATAATTATTTATGTGGAAAATATTTTTATGTAATTTATGAAATTCACAAGGCACCCACCCATGACTAGCTACTACCCTACAACCTTACAAGATCCTAATAATTAAACAAATCACATGGAAACATCATGCTTTTCCACAAGGAAAAGAACAAGATTAGCAAAAACATGATGCTGACCCATATTCTTGACCTTCCACCACCCAACCAAATCCTTCACACAACCAGGCCCTTTGCTTGTGTAACAATTGTCTACATGTATTTTGTCAGGATCCAATGTTTTAGACAAAGGCATTGACTTATAAAAGATTTAGAAAATGAACCTTCCTTTCTTTGTCCACCTATAATAATAGCAATGTACAATAGAGCATTGGCTAGCAAACAACAACAAAAACTAATGTCTTTGTTGTATTCATATAGCCTCATATTCATATTGGTGGGTCAATATTCATTAAGATCCAACAAAAGTCCACCACAAATCACTTCTTTCTTCTTCTTCCATTCTTTTCTGGTCCAAAATTTTTGACTTTTTTTGAGTCTTTATTCACACTAGTTAGTAGTAGGATCTGATACGAGTGCAACAATATTTCTGAAGAGTCTGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E353286" ref_strand="+" ref_description="SGN-E353286 	[cTOS-14-P8]">
      <seq>ttttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatattttccacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="79849" stop="80752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80149" g_stop="80452" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E353286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80149" e_stop="80452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATA</genome_strand>
        <mrna_strand>TTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E600436" ref_strand="+" ref_description="SGN-E600436 	[53446]">
      <seq>cgggttcgagtcaaatcggcggggactcatttctgctaaaatattataagctcagcacttttcaaaaactaaaaaaactttccttctctcagaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcggcggtaacgggagagatggaggaagcaggtcagaatgagaacggaaatccggcggcggtggcggtggaggaaaccgaaatggttattggaccgggtccagctcctcgtgctcgtgcgaaacgtcctcttcaatttgagcaagcttatctcgattcacttccttcagctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctattggtattgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatctcaagtgataagtctctgaaaatatatgatgtagtgaattatgacatgatgtccatgattcgtcttccattcatacctggatgtgtcgaatgggtatactaaacaaggggctgtcaaggctaaaacttgccgtttagtgatcgtaactcctccattggtgccatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="86831" stop="89655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87131" g_stop="87443" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88817" g_stop="88902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="398" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="487" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89160" g_stop="89357" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="688" r_length="201" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E600436" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87131" e_stop="87443"/>
          <exon e_start="88817" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTTTTGAGTCAAATCGGCGGGGACTCATTTCTGGT-TTACATTATAAGCTCAGCACTTTTC-AAAATTACAAAAACTTTCCTTCTCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATA-TAAACAAGGGGATGTCAAGGCT-AAACTTGCCG-TTAGTGATCGTAACTCCT-CATTGGTGCATATATAT</genome_strand>
        <mrna_strand>CGGGT-TCGAGTCAAATCGGCGGGGACTCATTTCTGCTAAAATATTATAAGCTCAGCACTTTTCAAAAACTAAAAAAACTTTCCTTCT--CTCAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGGCGGTAACGGGAGAGATGGAGGAAGCAGGTCAGAATGAGAACGGAAATCCGGCGGCGGTGGCGGTGGAGGAAACCGAAATGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCGAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCTTCAGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTATTGGTATTGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATCTCAAGTGATAAGTCTCTGAAAATATATGATGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCATTCATACCTGGATGTGTCGAATGGGTATACTAAACAAGGGGCTGTCAAGGCTAAAACTTGCCGTTTAGTGATCGTAACTCCTCCATTGGTGC-CATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E331412" ref_strand="+" ref_description="SGN-E331412 	[cTOD-9-L17]">
      <seq>tcactgagaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcctatcataatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcatgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattattgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcggcttcccttcatacctggatgtgttgaatgggtatataaacaaggggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggagcatatatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="86916" stop="89660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87216" g_stop="87443" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88817" g_stop="88902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89160" g_stop="89360" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="604" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E331412" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87216" e_stop="87443"/>
          <exon e_start="88817" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGAT</genome_strand>
        <mrna_strand>TCACTGAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCCTATCATAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCATGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTATTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGGCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGAGCATATATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E477099" ref_strand="+" ref_description="SGN-E477099 	[cSTB-47-A8]">
      <seq>agaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcggcggtgacgggagagatggaggaagcagatcagaatgagaacggaaatccggcggcggcggtggaggaaacggaaacggttattggaccgggtccagctcctcgtgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccttcagctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctattggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatctcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcgtcttccattcatacctggatgtgttgaatgggtatataaacaaggggctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="86922" stop="89607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87222" g_stop="87443" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88817" g_stop="88902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="394" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89160" g_stop="89307" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="542" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E477099" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87222" e_stop="87443"/>
          <exon e_start="88817" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCA</genome_strand>
        <mrna_strand>AGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGGCGGTGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGT-G--GAGGAAACGGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCTTCAGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTATTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATCTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCATTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E283128" ref_strand="+" ref_description="SGN-E283128 	[cLER-17-M23]">
      <seq>cggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcagatcagaatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcgtgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="86946" stop="89588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87246" g_stop="87443" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88817" g_stop="88902" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="284" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="373" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89160" g_stop="89288" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="502" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E283128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87246" e_stop="87443"/>
          <exon e_start="88817" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTA</genome_strand>
        <mrna_strand>CGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E213609" ref_strand="+" ref_description="SGN-E213609 	[cLEC-76-K13]">
      <seq>tgtttcagcatcacattttttcattattgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagataccattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtactgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggtatataaacaaagggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggggcatatatatgatgcaagagctggaacaaatgatcctataatatctaaagaggtacaggtgtgccccatcaaagtcatgaaatacaatcatgtctttgatactgtgatatcagcatatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttatattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcatctatagaggtaagccctgatggtaaacagntctcggtaacttcaccagatcgcangattcgtatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="88562" stop="90785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88862" g_stop="88902" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66">
            <donor d_prob="0.960" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88969" g_stop="89057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="130" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89160" g_stop="89399" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="370" r_length="240" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89400" i_stop="89537" i_length="138">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.777" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89538" g_stop="89659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="492" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90158" g_stop="90233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="568" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90424" g_stop="90485" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="630" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E213609" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88862" e_stop="88902"/>
          <exon e_start="88969" e_stop="89057"/>
          <exon e_start="89160" e_stop="89399"/>
          <exon e_start="89538" e_stop="89659"/>
          <exon e_start="90158" e_stop="90233"/>
          <exon e_start="90424" e_stop="90485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAGGTATTCTCATTGACTTGACTCAATACTAAGGTTGATATGTCGTTTGTGCAGTTCATTGGTCTTCTTTGTTATGTTAATATGAAGTTTCTACCAGCAGTCACACTAATCAAATTGCTAACTTAGTTTCCTTGTAATCAGGTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTG</genome_strand>
        <mrna_strand>TGTTTCAGCATCACATTTTTTCATTATTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GATACCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTACTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAAGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGGGCATATATATGATGCAAGAGCTGGAACAAATGATCCTATAATATCTAAAGAG..........................................................................................................................................GTACAGGTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCATATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTATATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCATCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGNTCTCGGTAACTTCACCAGATCGCANGATTCGTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E303743" ref_strand="+" ref_description="SGN-E303743 	[cLEX-4-I19]">
      <seq>tttgatactgtgatatcagcagatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="89280" stop="91444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89580" g_stop="89659" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90158" g_stop="90233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="156" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90424" g_stop="90531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="264" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="441" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90961" g_stop="91144" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="625" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E303743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89580" e_stop="89659"/>
          <exon e_start="90158" e_stop="90233"/>
          <exon e_start="90424" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCT</genome_strand>
        <mrna_strand>TTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E310274" ref_strand="+" ref_description="SGN-E310274 	[cTOA-1-E24]">
      <seq>tggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="89325" stop="91106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89625" g_stop="89659" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90158" g_stop="90233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="111" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90424" g_stop="90531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="219" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90646" g_stop="90806" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="380" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E310274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89625" e_stop="89659"/>
          <exon e_start="90158" e_stop="90233"/>
          <exon e_start="90424" e_stop="90531"/>
          <exon e_start="90646" e_stop="90806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAAC</genome_strand>
        <mrna_strand>TGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E406881" ref_strand="+" ref_description="SGN-E406881 	[PPI-5-E10]">
      <seq>ccacacttcagttcccagagaatgtggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacatgatctccagaggagtgatgttcctttataccgacttgaagcaattgactttggacgaagaatggctgcggaaaaagaaattgagaaaacagaatatgtaccacaacctaatgctgtttttgatgaaagttccaacttcattatatatgcaactctcctaggaattaaagttataaatctacacaccaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaacatccctgctgcggcagctaatgcaaatgaaagcaaggagcccttgatagatcccactctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgatgaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="89854" stop="92021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90233" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="101" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90424" g_stop="90531" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="209" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="386" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90961" g_stop="91178" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="604" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91650" g_stop="91721" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="676" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E406881" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90233"/>
          <exon e_start="90424" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91178"/>
          <exon e_start="91650" e_stop="91721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGA</genome_strand>
        <mrna_strand>GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACATGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCAATTGACTTTGGACGAAGAATGGCTGCGGAAAAAGAAATTGAGAAAACAGAATATGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAACTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................GTTATAAATCTACACACCAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAACATCCCTGCTGCGGCAGCTAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCACTCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGATGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E212157" ref_strand="+" ref_description="SGN-E212157 	[cLEC-75-F6]">
      <seq>ttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgantatttgatatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="90183" stop="93086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90483" g_stop="90531" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="226" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90961" g_stop="91178" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="444" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91650" g_stop="91782" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="577" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92667" g_stop="92786" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="697" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E212157" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90483" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91178"/>
          <exon e_start="91650" e_stop="91782"/>
          <exon e_start="92667" e_stop="92786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCAT</genome_strand>
        <mrna_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGANTATTTGATATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E206980" ref_strand="+" ref_description="SGN-E206980 	[cLEC-33-K20]">
      <seq>ttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtgaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="90183" stop="92046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90483" g_stop="90531" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="226" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90961" g_stop="91178" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="444" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91650" g_stop="91746" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="541" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E206980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90483" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91178"/>
          <exon e_start="91650" e_stop="91746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATT</genome_strand>
        <mrna_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTGAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E390124" ref_strand="+" ref_description="SGN-E390124 	[TUS-17-K23]">
      <seq>taaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="90198" stop="93111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90498" g_stop="90531" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="211" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90961" g_stop="91178" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="429" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91650" g_stop="91782" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="562" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92667" g_stop="92811" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="707" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E390124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90498" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="91178"/>
          <exon e_start="91650" e_stop="91782"/>
          <exon e_start="92667" e_stop="92811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTC</genome_strand>
        <mrna_strand>TAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E210574" ref_strand="+" ref_description="SGN-E210574 	[cLEC-35-P12]">
      <seq>aaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="90199" stop="91137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90499" g_stop="90531" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90646" g_stop="90822" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="210" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90961" g_stop="90974" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="224" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E210574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90499" e_stop="90531"/>
          <exon e_start="90646" e_stop="90822"/>
          <exon e_start="90961" e_stop="90974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACA</genome_strand>
        <mrna_strand>AAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E320509" ref_strand="+" ref_description="SGN-E320509 	[cTOB-22-G21]">
      <seq>gagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctctcaattcttcataacaactgttgccactccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="90711" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91011" g_stop="91178" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91650" g_stop="91782" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92667" g_stop="92890" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="525" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92891" i_stop="93944" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93945" g_stop="94098" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="679" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94354" g_stop="94358" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="684" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E320509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91011" e_stop="91178"/>
          <exon e_start="91650" e_stop="91782"/>
          <exon e_start="92667" e_stop="92890"/>
          <exon e_start="93945" e_stop="94098"/>
          <exon e_start="94354" e_stop="94358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTT</genome_strand>
        <mrna_strand>GAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E227073" ref_strand="+" ref_description="SGN-E227073 	[cLED-1-A15]">
      <seq>gaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="91388" stop="94308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91688" g_stop="91782" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92667" g_stop="92890" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="319" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92891" i_stop="93944" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93945" g_stop="94008" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="383" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E227073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91688" e_stop="91782"/>
          <exon e_start="92667" e_stop="92890"/>
          <exon e_start="93945" e_stop="94008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCT</genome_strand>
        <mrna_strand>GAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E390123" ref_strand="-" ref_description="SGN-E390123 	[TUS-17-K23]">
      <seq>actccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtctttagagaaagtgaagaccgacaaaggtgacaagccataccaggatgtaaaaatattgaatgtgactgttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="93733" stop="95311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94033" g_stop="94098" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94354" g_stop="94996" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="709" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="734"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E390123" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94033" e_stop="94098"/>
          <exon e_start="94354" e_stop="94996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCA</genome_strand>
        <mrna_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E550748" ref_strand="+" ref_description="SGN-E550748 	[TUS-50-H14]">
      <seq>ttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="94124" stop="95310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94424" g_stop="95010" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E550748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94424" e_stop="95010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</genome_strand>
        <mrna_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E207004" ref_strand="+" ref_description="SGN-E207004 	[cLEC-33-F16]">
      <seq>tccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="94125" stop="95307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94425" g_stop="95007" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E207004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94425" e_stop="95007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCAT</genome_strand>
        <mrna_strand>TCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E227074" ref_strand="+" ref_description="SGN-E227074 	[cLED-1-A15]">
      <seq>tttttttttttgagaagtgaaatgaagcttactgataatttgaattcataatagggtcttgtacagtaactgcagctacaattcaaatatatgaagctaggacttaaaaagatgtcaaaaaggtctacacttgttgtagttcagttgaaaccgcgaaaacaacatctaggtctctaactctataaattactgtccacaacatgaacattgataataagctaggccgttctgtctcactaatgaatcttgagtggaaaacgctgatcgtacactccttgtggcaatgagctaatcctaataccagatcagccagcaactcccattcactaatatcctttcaacttgagtgaagcaagtggaattctacttcccggaggcacgaaaagtttcttaaaactgaaggaatctatgttgtatagcaggttttgagaaaagtaccagaagtcatagattacacagatacatgtcagatcagggtccaacgaggatagcaatactttccaacgtaaagtcgtagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="95318" stop="94208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95019" g_stop="94508" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="521" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E227074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95019" e_stop="94508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAAGTGAAATGAAGCTTACTGATAATTTGAATTCATAATAGGGTCTTGTACAGTAACTGCAGCTACAATTCAAATATATGAAGCTAGGACTTAAAAAGATGTCAAAAAGGTCTACACTTGTTGTAGTTCATTTGAAACCGCGAAAACAACATCTAGGTCTCTAACTCTATAAATTACTGTCCACAACATGAACATTGATAATAAGCTAGGCCGTTCTGTCTCACTAATGAATCTTGAGTGGAAAACGCTGATCGTACACTCCTTGTGGCAATGAGCTAATCCTAATACCAGATCAGCCAGCAACTCCCATTCACTAATATCCTTTCAACTTGAGTGAAGCAAGTGGAATTCTACTTCCCGGAGGCACGAAAAGTTTCTTAAAACTGAAGGAATCTATGTTGTATAGCAGGTTTTGAGAAAAGTACCAGAAGTCATAGATTACACAGATACATGTCAGATCAGGGTCCAACGAGGATAGCAATACTTTCCAACGTAAAGTCGTAGTACT</genome_strand>
        <mrna_strand>TTGAGAAGTGAAATGAAGCTTACTGATAATTTGAATTCATAATAGGGTCTTGTACAGTAACTGCAGCTACAATTCAAATATATGAAGCTAGGACTTAAAAAGATGTCAAAAAGGTCTACACTTGTTGTAGTTCAGTTGAAACCGCGAAAACAACATCTAGGTCTCTAACTCTATAAATTACTGTCCACAACATGAACATTGATAATAAGCTAGGCCGTTCTGTCTCACTAATGAATCTTGAGTGGAAAACGCTGATCGTACACTCCTTGTGGCAATGAGCTAATCCTAATACCAGATCAGCCAGCAACTCCCATTCACTAATATCCTTTCAACTTGAGTGAAGCAAGTGGAATTCTACTTCCCGGAGGCACGAAAAGTTTCTTAAAACTGAAGGAATCTATGTTGTATAGCAGGTTTTGAGAAAAGTACCAGAAGTCATAGATTACACAGATACATGTCAGATCAGGGTCCAACGAGGATAGCAATACTTTCCAACGTAAAGTCGTAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E575927" ref_strand="-" ref_description="SGN-E575927 	[35628]">
      <seq>gctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctgttgttggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataattttcttggtaaacatcttgagtcaattggaaattactagtattgttggatttgatttgcttcttttttgttgatgtatttgttgccagtttcaactcatcaaaacctgcaattctcaatttataatatgacttgggcagtttcaacgcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97194" stop="94849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96894" g_stop="96864" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="261" r_length="230" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95422" g_stop="95152" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="525" r_length="264" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E575927" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575927" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96894" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT-ATTTGCTTCTTTTCTTGTTGATGTATTCGTTGTCAG-TTCAACTCGTCAAAACCTGCAATTCTCAATTTATA</genome_strand>
        <mrna_strand>GCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGTTGTTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTGATTTGCTTCTTTT-TTGTTGATGTATTTGTTGCCAGTTTCAACTCATCAAAACCTGCAATTCTCAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E557347" ref_strand="+" ref_description="SGN-E557347 	[16131]">
      <seq>cagcagccctaccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataattttcttggtaaacatcttgagtcaattggaaattactagtattgttggatttgatttgctttcttttttgttgacaaaaaaccaacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97397" stop="94902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97110" g_stop="97070" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="133" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="363" r_length="230" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95203" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="576" r_length="213" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E557347" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97110" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT-ATTTGCTTCTTTTCTTGTTG</genome_strand>
        <mrna_strand>CAGCAGCCCTA--CCATTAAAGCTTACAAATCT--CACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTGATTTGCTTTCTTTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E407674" ref_strand="+" ref_description="SGN-E407674 	[PPI-8-K7]">
      <seq>ccctacgccattaaagcttacaaatctcataaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtggtggtgctgcancaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatggaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttctagtttagttaatgaacctataatttgcttggtaaacatcttgagtaaattggaaattactagtattggtggatttgatttgcttctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97404" stop="94908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97104" g_stop="97070" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="129" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="365" r_length="236" r_score="0.885"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95208" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="573" r_length="208" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E407674" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97104" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---------TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT-ATTTGCTTCTTTTCT</genome_strand>
        <mrna_strand>CCCTACGCCATTAAAGCTTACAAATCT--CATAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGGTGGTGCTGCANCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGGA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTCTAGTTTAGTTAATGAACCTATAATTTGCTTGGTAAACATCTTGAGTAAATTGGAAATTACTAGTATTGGTGGATTTGATTTGCTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E589110" ref_strand="-" ref_description="SGN-E589110 	[42678]">
      <seq>ctgccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctctccatgtgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccttgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgattttgcttttagtttagttaatgaacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97407" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97107" g_stop="97070" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="132" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="362" r_length="230" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95218" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="567" r_length="205" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E589110" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589110" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97107" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTG</genome_strand>
        <mrna_strand>CTGCCCTACGCCATTAAAGCTTACAAATCT--CACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCTCCATGTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCTTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTTGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E456968" ref_strand="+" ref_description="SGN-E456968 	[cPRO-2-A3]">
      <seq>agccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgatctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtaactgtatctggtggtggtggtggtgctgcagcaccaactgctgaggagaagaaagtggaaaagaaggtggaatagaaagaggaatctgatgacgacatgggcttcagtctcttcgattataggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttaggttagttaatgaacctataattttcttggtaaacatcttgagtcgattggaaattactagtattgttggaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97406" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97106" g_stop="97070" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="131" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="361" r_length="230" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95218" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="558" r_length="197" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E456968" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97106" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTG</genome_strand>
        <mrna_strand>AGCCCTACGCCATTAAAGCTTACAAATCT--CACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGATCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAACTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAACTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAATAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTATAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGGTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCGATTGGAAATTACTAGTATTGTTGGAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E348367" ref_strand="+" ref_description="SGN-E348367 	[cTOF-27-K3]">
      <seq>caacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97413" stop="94922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97070" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="140" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="367" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95222" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="568" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E348367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTA</genome_strand>
        <mrna_strand>CAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E306304" ref_strand="+" ref_description="SGN-E306304 	[cLEX-13-A24]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaaaanannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97416" stop="94922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97070" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="587"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E306304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E580686" ref_strand="+" ref_description="SGN-E580686 	[5929]">
      <seq>ctacgccattaaagcttacaaatctcacaaatagaaaatgaatgttatcgcttcttacttgttggctgggttgggtggcacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgatagtgattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcatgaagaagttggcttcagtacctgctggtggtggtggtaggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcggattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaagtttactgatttcgcttatagtttagttaatgaacctataattttcttggtaaacatcttggagtcaattggcaaattactagtattgttggatttgaagagacgaaaacagcaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97402" stop="94923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97102" g_stop="97070" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="124" r_length="94" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="356" r_length="232" r_score="0.916"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="552" r_length="196" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E580686" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97102" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAG-GATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGT-GGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTC-GATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAA-CTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTT-GAGTCAATTGG-AAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CTACGCCATTAAAGCTTACAAATCT--CAC-AA..............................................................................................................AT-AGAAAATGAATGTTATCGCTTCTTACTTGTTGGCTGGGTTGGGTGGC-ACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGTGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCATGAAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTAGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAAGTTTACTGATTTCGCTTATAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGGAGTCAATTGGCAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E348734" ref_strand="+" ref_description="SGN-E348734 	[cTOF-29-G3]">
      <seq>cttaccaaatctcacaccaaaataagaaaatgaaaggttatcgcttcttacttgttaagctgtgttgggtggcaaaccacctccccatctgctgcagaatttgaagaagatccttgcttctgttggagctgaagctgatgatgaataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtgggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactggtttcgcttttagtttaattaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactaatattggtggattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97261" stop="94923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97088" g_stop="97070" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="122" r_length="101" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="351" r_length="229" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="551" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E348734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97088" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTA-CAAATCTCACA-CAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATG-AAGGTTATCGCTTCTTACTTGTT-AGCTGTGTTGGGTGGC-AA-CACCTCCCCATCTGCTGCAG-ATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATG-ATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGT-GGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CTTACCAAATCTCACACCAAA..............................................................................................................ATAAGAAAATGAAAGGTTATCGCTTCTTACTTGTTAAGCTGTGTTGGGTGGCAAACCACCTCCCCATCTGCTGCAGAATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGAATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGGTTTCGCTTTTAGTTTAATTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAATATTGGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E468577" ref_strand="+" ref_description="SGN-E468577 	[cSTB-5-A18]">
      <seq>cttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagccgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaacgtggaagagaaagaggaatctgatgacgacatgggcttcagtctctttgattagaggaatgttttactggtttctgtatgaaaggacctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctatattttgcttggtaaacatctcgagtcaaatggaaattactagtattgttggatttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97235" stop="94923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96935" g_stop="96864" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="296" r_length="224" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="488" r_length="192" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="500"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E468577" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96935" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCCGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAACGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTTGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGACCTGTT-CCC---T----TTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTCGAGTCAAATGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E586725" ref_strand="+" ref_description="SGN-E586725 	[75559]">
      <seq>tcactgagctgattgctgctggcagggnagaagtttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccttgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgattttgcttttagtttagttaatgaacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="95988" stop="94923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95688" g_stop="95525" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="369" r_length="200" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="393"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E586725" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95688" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGAGCTGATTGCTGCTGGCAGGG-AGAAG-TTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGT-G--GTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>TCACTGAGCTGATTGCTGCTGGCAGGGNAGAAGTTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCTTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTTGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E238765" ref_strand="-" ref_description="SGN-E238765 	[cLEL-9-N12]">
      <seq>ggcacgaggttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="95964" stop="94922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95664" g_stop="95525" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95422" g_stop="95223" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="341" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="360"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E238765" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238765" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95664" e_stop="95525"/>
          <exon e_start="95422" e_stop="95223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGA-GAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>GGCACGAGGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E599686" ref_strand="-" ref_description="SGN-E599686 	[52680]">
      <seq>acgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctctccatgtgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccttgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgattttgcttttagtttagttaatgaacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97400" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97100" g_stop="97070" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="125" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="355" r_length="230" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95224" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="554" r_length="199" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E599686" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599686" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97100" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</genome_strand>
        <mrna_strand>ACGCCATTAAAGCTTACAAATCT--CACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCTCCATGTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCTTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTTGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E304814" ref_strand="+" ref_description="SGN-E304814 	[cLEX-10-F19]">
      <seq>cacaaaataagaaaatgaagtatcgcttcttacttgtagctggttgggtggcaacacctcccatctgctgcaattgaaaaatccttgctttgtggagctgaagctgatgatgataggattgaactcctcttgtccaagtaagggcaaggacatcactgagctgattgctgctggcagggagaagttgngcttagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97261" stop="94924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97075" g_stop="97070" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="92" r_length="86" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="316" r_length="224" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95224" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="515" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E304814" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97075" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTG-GCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</genome_strand>
        <mrna_strand>CACAAA..............................................................................................................ATAAGAAAATGAA-GT-ATCGCTTCTTACTTG-TAGCTG-GTTGGGTGGCAACACCT-CCCATCTGCTGCA-A-TTGAA-AA-ATCCTTGCTT-TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGT-CCAAGT-AAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGNGCTT-AGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E296178" ref_strand="+" ref_description="SGN-E296178 	[cLET-24-P14]">
      <seq>agcagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgcttaactggtttctgtatgaatggactcgttccccagttcccgttgagttgattctgggaatctttttgtcaacttactgatttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgctggaaaacaactgaagattcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97418" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97118" g_stop="97070" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="145" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="372" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="568" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E296178" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97118" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>AGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGCTTAACTGGTTTCTGTATGAATGGACTCGTTCCCCAGTTCCCGTTGAGTTGATTCTGGGAATCTTTTTGTCAACTTACTGATTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E303555" ref_strand="+" ref_description="SGN-E303555 	[cLEX-2-L8]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97416" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97070" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="566" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E303555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E413037" ref_strand="+" ref_description="SGN-E413037 	[STM-17-A14]">
      <seq>agcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagccgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctctttgattagaggaatgttttactggtttctgtatgaaaggacctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctatattttgcttggtaaacatctcgagtcaaatggaaattactagtattgttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="134" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="358" r_length="224" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="546" r_length="188" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="557"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E413037" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCCGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTTGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGACCTGTT-CCC---T----TTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTCGAGTCAAATGGAAATTACTAGTATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E461051" ref_strand="+" ref_description="SGN-E461051 	[cPRO-34-K17]">
      <seq>ggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataattttcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="95998" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95698" g_stop="95525" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95422" g_stop="95227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="365" r_length="188" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="375"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E461051" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95698" e_stop="95525"/>
          <exon e_start="95422" e_stop="95227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>GGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E586210" ref_strand="-" ref_description="SGN-E586210 	[60261]">
      <seq>ctgattgctgctggcagggagaagttggcttcagtacctgctggtgntgttgntggagttgcagtagctgtatctgtgnttgttgttggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataattttcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaaaaacctcgtgccgaattcggcacgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="95980" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95680" g_stop="95525" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95422" g_stop="95227" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="347" r_length="188" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E586210" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586210" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95680" e_stop="95525"/>
          <exon e_start="95422" e_stop="95227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTG-G--TGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>CTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGNTGTTGNTGGAGTTGCAGTAGCTGTATCTGTGNTTGTTGTTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E372405" ref_strand="-" ref_description="SGN-E372405 	[TUS-32-E16]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtaatgtggaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97416" stop="94922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97070" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95232" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="561" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E372405" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372405" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E413038" ref_strand="-" ref_description="SGN-E413038 	[STM-17-A14]">
      <seq>agcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagccgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggtggagttgcagtagctgtatctggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctctttgattagaggaatgttttactggtttctgtatgaaaggacctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctatattttgcttggtaaacatctcgagtcaaaggaaaattactagtattgtgacaaaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="94930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="134" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="358" r_length="224" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95232" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="541" r_length="183" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E413038" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATT</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCCGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTTGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGACCTGTT-CCC---T----TTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATATTTTGCTTGGTAAACATCTCGAGTCAAAGGAAAATTACTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E437426" ref_strand="+" ref_description="SGN-E437426 	[cSTA-3-P21]">
      <seq>agaaaatgattgttatcgcttcttacttgttgggtgaattgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtctcaagtcaagggcaaggatatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcancaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgacgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccctgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataatttgcttggtaatcatcttgaggaaattggaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97256" stop="94940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96956" g_stop="96864" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="320" r_length="227" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95422" g_stop="95232" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="511" r_length="191" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E437426" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96956" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATT</genome_strand>
        <mrna_strand>AGAAAATGATTGTTATCGCTTCTTACTTGTTGGGTGAATTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCTCAAGTCAAGGGCAAGGATATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGT---GGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCANCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGACGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCCTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTGCTTGGTAATCATCTTGAGGAAATTGGAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E345530" ref_strand="+" ref_description="SGN-E345530 	[cTOF-18-M12]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97416" stop="94933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97070" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95233" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="560" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E345530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E454458" ref_strand="+" ref_description="SGN-E454458 	[cSTS-23-K8]">
      <seq>agcagccctacgccattaaagcttacaaatctcataaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatggaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttctagtttagttaatgaacctataatttgcttggtaaacatcttgagtaaattggaaaatactagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="94934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.93"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="134" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="370" r_length="236" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95235" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="550" r_length="180" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="560"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E454458" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---------TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGT</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCA--TAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGGA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTCTAGTTTAGTTAATGAACCTATAATTTGCTTGGTAAACATCTTGAGTAAATTGGAAAATACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E484730" ref_strand="+" ref_description="SGN-E484730 	[cSTE-14-D24]">
      <seq>gcagcagcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtctcaagtcaagggcaaggatatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgacgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccctgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataatttgcttggtaatcatcttgaggaaattggaaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97414" stop="94940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97114" g_stop="97070" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="139" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="366" r_length="227" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95237" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="552" r_length="186" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="562"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E484730" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97114" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTA</genome_strand>
        <mrna_strand>GCAGCAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCTCAAGTCAAGGGCAAGGATATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGT---GGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGACGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCCTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTGCTTGGTAATCATCTTGAGGAAATTGGAAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E486991" ref_strand="+" ref_description="SGN-E486991 	[cSTE-23-L2]">
      <seq>gcagcagcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtctcaagtcaagggcaaggatatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgacgacgacatgggcttcagtctcttcgattagaggaatgttttactggtttctgtatgaaaggccctgttcccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataatttgcttggtaatcatcttgaggaaattggaaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97414" stop="94940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97114" g_stop="97070" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="139" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="366" r_length="227" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95237" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="552" r_length="186" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="563"/>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E486991" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97114" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTA</genome_strand>
        <mrna_strand>GCAGCAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCTCAAGTCAAGGGCAAGGATATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGT---GGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGACGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTTACTGGTTTCTGTATGAAAGGCCCTGTTCCCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTGCTTGGTAATCATCTTGAGGAAATTGGAAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E561032" ref_strand="+" ref_description="SGN-E561032 	[20780]">
      <seq>ccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagcggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagacaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaaggccctgttccctttgagtttattctgggaatctttttgtcaatttactgatttcgcttttagtttagttaatgaacctataattttcttggtaaacatcttgagtcaattggaaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97202" stop="94939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96902" g_stop="96864" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="271" r_length="232" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95422" g_stop="95239" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="447" r_length="176" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E561032" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96902" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAG-GGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAG-CACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTAC</genome_strand>
        <mrna_strand>CCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGCGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGACACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAA-AG----G---CCCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTCAATTTACTGATTTCGCTTTTAGTTTAGTTAATGAACCTATAATTTTCTTGGTAAACATCTTGAGTCAATTGGAAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E575253" ref_strand="+" ref_description="SGN-E575253 	[34849]">
      <seq>agcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttagcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcacgggcaacgacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtgctgcagcaccagctgctgaggagaagaaagtggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctcttcgattagaggaatgtgttactggtttctgtatgaaagggcctgttccctttgagtttattctgggaatctttttgtcatttactgatttcgcttttcagttttagttaatgagactataattttcttggtaaacatcttgacgtcaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="94944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="134" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="364" r_length="230" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95244" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="537" r_length="173" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E575253" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTT-AG-TTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGA-GTCAATTGGAA</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTAGCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCACGGGCAACGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGCTGCAGCACCAGCTGCTGAGGAGAAGAAAGTGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTGTTACTGGTTTCTGTATGAAAGG----G----CCTGTTCCCTTTGAGTTTATTCTGGGAATCTTTTTGTC-ATTTACTGATTTCGCTTTTCAGTTTTAGTTAATGAGACTATAATTTTCTTGGTAAACATCTTGACGTCAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E336384" ref_strand="+" ref_description="SGN-E336384 	[cTOE-10-P4]">
      <seq>agcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgctttggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="94961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="136" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="363" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95254" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="533" r_length="170" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E336384" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGC-TTGGTAAACATCTTGAG</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTTGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E288504" ref_strand="+" ref_description="SGN-E288504 	[cLES-8-H15]">
      <seq>gcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatgtttttgtcaacttaactgtttcgcttttagtttagttaatgcacctattttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97408" stop="94969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97108" g_stop="97070" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="135" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="362" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95269" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="516" r_length="154" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E288504" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97108" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTT</genome_strand>
        <mrna_strand>GCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATGTTTTTGTCAACTTAACTGTTTCGCTTTTAGTTTAGTTAATGCACCTATTTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E319177" ref_strand="+" ref_description="SGN-E319177 	[cTOB-16-K24]">
      <seq>agccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttaatttagttaatgcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97406" stop="94979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97106" g_stop="97070" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="133" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="360" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95279" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="504" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E319177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97106" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTA</genome_strand>
        <mrna_strand>AGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAATTTAGTTAATGCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E278594" ref_strand="+" ref_description="SGN-E278594 	[cLER-10-H19]">
      <seq>aacattagccctacgccattgacgcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgattatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggatctttttgcaacttactgttttcgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97412" stop="94997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97112" g_stop="97070" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.91"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="139" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="366" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95297" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="490" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E278594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97112" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTA</genome_strand>
        <mrna_strand>AACATTAGCCCTACGCCATTGACGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATTATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGG-ATCTTTTTG-CAACTTACTGTTTTCGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E297476" ref_strand="+" ref_description="SGN-E297476 	[cLET-28-C19]">
      <seq>agcaacagcagccctactccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttccccgtgagtttattctgggaatctttttgtcaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95310" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="482" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E297476" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACTCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCCGTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E309245" ref_strand="+" ref_description="SGN-E309245 	[cLEY-22-I21]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccaattcccgttgagtttattctgggaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95322" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="470" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E309245" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAATTCCCGTTGAGTTTATTCTGGGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E310595" ref_strand="+" ref_description="SGN-E310595 	[cLEZ-19-N12]">
      <seq>agcaacattcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttctattagaggaatgtttaactggtttctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97407" stop="95070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.93"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95370" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="423" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E310595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAG-CAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATG</genome_strand>
        <mrna_strand>AGCAACATTCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCTATTAGAGGAATGTTTAACTGGTTTCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E471582" ref_strand="+" ref_description="SGN-E471582 	[cSTB-24-D15]">
      <seq>agcagccctacgccattaaagcttacaaatctcacaaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaatacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagccgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacccgctggtggtggtgggggagttgcagtagctgtatctggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgacgacatgggcttcagtctctttgattagaggaatgttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="95082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="134" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="358" r_length="224" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95382" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="399" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E471582" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACT</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACA-AAA..............................................................................................................-TAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAATACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCCGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGGGGAGTTGCAGTAGCTGTATC---TGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAC......................................................................................................GACATGGGCTTCAGTCTCTTTGATTAGAGGAATGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E309828" ref_strand="+" ref_description="SGN-E309828 	[cLEZ-10-C10]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97416" stop="95098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97116" g_stop="97070" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95398" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="395" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E309828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97116" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E372406" ref_strand="+" ref_description="SGN-E372406 	[TUS-32-E16]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgctgcaccagctgccgaggagaagaaagaggaaaacattgtggaagacaaagaggaatctgatgatgacatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95413" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="379" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E372406" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCTGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAACATTGTGGAAGACAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E342495" ref_strand="+" ref_description="SGN-E342495 	[cTOF-8-L5]">
      <seq>ccctacgccattaaagcttacaaatctcacacaaattttgtgtgtatttgtagataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctgggggcggggggggaggtgcaggagctgtatctggtggggggggggcgtggacacccgctggcgaggggaagaaagagggaaagaagggggaagaaaaaggaggatctggtggagacctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97404" stop="95227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97104" g_stop="97070" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96978" i_length="92">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.246" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96977" g_stop="96864" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95525" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="376" r_length="227" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95422" g_stop="95415" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="384" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E342495" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97104" e_stop="97070"/>
          <exon e_start="96977" e_stop="96864"/>
          <exon e_start="95751" e_stop="95525"/>
          <exon e_start="95422" e_stop="95415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGG</genome_strand>
        <mrna_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA............................................................................................TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGGGGCGGGGGGGGAGGTGCAGGAGCTGTATCTGGTGGGGGGGGGGCGTGGACACCCGCTGGCGAGGGGAAGAAAGAGGGAAAGAAGGGGGAAGAAAAAGGAGGATCTGGTGGA......................................................................................................GACCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E292794" ref_strand="+" ref_description="SGN-E292794 	[cLET-11-E3]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95520" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="374" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E292794" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAG</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E421335" ref_strand="+" ref_description="SGN-E421335 	[STM-32-P7]">
      <seq>ccctacgccattaaagcttacaaatctcataaaataagaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97404" stop="95290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97104" g_stop="97070" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="129" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95583" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="298" r_length="169" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E421335" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97104" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACC</genome_strand>
        <mrna_strand>CCCTACGCCATTAAAGCTTACAAATCT--CATAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E401542" ref_strand="+" ref_description="SGN-E401542 	[PPC-4-F1]">
      <seq>gaaaatgaaggttatcgcttcttacttgttggctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtacctgctggtggtggtggtggagttgcagtagctgtatctggtggtggtggtggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97255" stop="95286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96955" g_stop="96864" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95586" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="258" r_length="166" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E401542" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96955" e_stop="96864"/>
          <exon e_start="95751" e_stop="95586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGC</genome_strand>
        <mrna_strand>GAAAATGAAGGTTATCGCTTCTTACTTGTTGGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCTGCTGGTGGTGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E570173" ref_strand="+" ref_description="SGN-E570173 	[14715]">
      <seq>ggctgtgttgggtggcaacactctccatgtgctgcaatttgaagaagatccttgcttctgttggagctgaactgatgatggtaggattgaactcctcttgtcccaagtcaagggcaaggacatcactgagctgattgctgctggcaggggagaagttggcttcagtacccgctggtggtggtggtggagttggagtagctgtatctggtggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97224" stop="95294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96925" g_stop="96864" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95594" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="218" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E570173" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96925" e_stop="96864"/>
          <exon e_start="95751" e_stop="95594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCA-GGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGT</genome_strand>
        <mrna_strand>GGCTGTGTTGGGTGGCAACA-CTCTCCATGTGCTGCA-ATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAA-CTGATGATGGTAGGATTGAACTCCTCTTGTCCCAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGGAGAAGTTGGCTTCAGTACCCGCTGGTGGTGGTGGTGGAGTTGGAGTAGCTGTATCTGGTGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E294357" ref_strand="+" ref_description="SGN-E294357 	[cLET-14-P2]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95603" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="291" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E294357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E294358" ref_strand="+" ref_description="SGN-E294358 	[cLET-14-P2]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97415" stop="95303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97115" g_stop="97070" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95603" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="291" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E294358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97115" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E336385" ref_strand="+" ref_description="SGN-E336385 	[cTOE-10-P6]">
      <seq>agcatccctacgccatttaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagttaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97409" stop="95307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97109" g_stop="97070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96959" g_stop="96864" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="136" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95751" g_stop="95607" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="281" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E336385" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97109" e_stop="97070"/>
          <exon e_start="96959" e_stop="96864"/>
          <exon e_start="95751" e_stop="95607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC</genome_strand>
        <mrna_strand>AGCATCCCTACGCCATTTAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTTAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E295802" ref_strand="+" ref_description="SGN-E295802 	[cLET-25-J7]">
      <seq>gttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="-" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="97219" stop="95336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96919" g_stop="96864" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95751" g_stop="95636" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="172" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="-" ref_id="SGN-E295802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96919" e_stop="96864"/>
          <exon e_start="95751" e_stop="95636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGT</genome_strand>
        <mrna_strand>GTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5zPnnt/sgn_ests_tomato_potato" ref_id="SGN-E284025" ref_strand="+" ref_description="SGN-E284025 	[cLER-13-E23]">
      <seq>aaagtaccacacaaagtgacatgctttacattgctactagccaaggaggcagtattgacattggataatgtggccaagagaggaatctctctatgcaatagatgttccttgtggggaatgctaatgagacagtgagacatctcttattacattgcaacttgactgggcaactgtggcagattttccttaatctcagaggcatatcttgatgtatgcctagcaagattgatgagactctattcggttgggagatggctggagttggggctacaaacagagaaagatggcggatgatccctgctagtatttggtggctatatggagggagagaaacgagagatgttacgaaaataggaacaaaaacctgcaggaaattaagcttaagtgtgttttattgatctgcttttggtgtacaaatgtctactccaatgaaactgagtcaatcatagatgttttaggatccatttacatttggttcagttttttggattgaatatacttactttctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-Y5gnl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0139J14.1" temp_strand="+" temp_description="C11HBa0139J14.1  AC212436.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0139J14 sequenced_by:ivf-caas">
        <position start="108026" stop="109130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108326" g_stop="108830" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.1" gen_strand="+" ref_id="SGN-E284025" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108326" e_stop="108830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGCCACACAAAGTGGCATGCTTCACATGGCTACTAGCCAATGAAGCAGTTTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATATCTTCTTGCATTGCAACTTTACTGGGCAGCTGTGGCAGATTTTCCTTTATCTCAGA-GCATATCTTGGTGTATGCCTAGCAAGATTGATGAGACTCTATTCAGTTGGAAGATGGCTGGAGTTGCGGCTACAAACAGAGAAAGGTGGAGAATGATCCCTGCTAGAATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATATTTTGAGAATTGGAACAACACCCTGCAGGAAGTTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATCGATATTTTAGGATCCATTTAGATTTGGTTCAGTTTTTTGGATAGATTATACTTTCT</genome_strand>
        <mrna_strand>AAAGTACCACACAAAGTGACATGCTTTACATTGCTACTAGCCAAGGAGGCAGTATTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTG-GGGAATGCTAATGAGACAGTGAGACATCTCTTATTACATTGCAACTTGACTGGGCAACTGTGGCAGATTTTCCTTAATCTCAGAGGCATATCTTGATGTATGCCTAGCAAGATTGATGAGACTCTATTCGGTTGGGAGATGGCTGGAGTTGGGGCTACAAACAGAGAAAGATGGCGGATGATCCCTGCTAGTATTTGGTGG-CTATATGGAGGGAGAGAAACGAGAGATGTTACGAAAATAGGAACAAAAACCTGCAGGAAATTAAGCTTAAGTGTGTTTTATTGATCTGCTTTTGGTGTACAAATGTCTACTCCAATGAAACTGAGTCAATCATAGATGTTTTAGGATCCATTTACATTTGGTTCAGTTTTTTGGATTGAATATACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>110</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11416" PGL_stop="18383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14620" e_stop="16162"/>
            <exon e_start="16578" e_stop="17124"/>
            <exon e_start="18365" e_stop="18383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="14620" e_stop="16162" e_length="1543"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="16578" e_stop="17124" e_length="547"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240"/>
          </intron>
          <exon e_serial="3" e_score="0.789">
            <gDNA_exon_boundary e_start="18365" e_stop="18383" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14620" stop="15313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14621" stop="15170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15146" stop="15853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15541" stop="16162"/>
              <exon start="16578" stop="16754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15939" stop="16162"/>
              <exon start="16578" stop="17066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419624" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15963" stop="16162"/>
              <exon start="16578" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16073" stop="16162"/>
              <exon start="16578" stop="17124"/>
              <exon start="18365" stop="18383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537428" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16093" stop="16162"/>
              <exon start="16578" stop="17096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395748" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> K  E  T  S  W  A  P  M  R  R  F  H  S  M  L  L  Q  P  M  K  S  V  G  V  K  K  K  I  L  H  G  W  N  E  M  C  L  N  T  V  V  I  *  G  F  F  L  Y  I  W  L  *  V  V  W  F  Q  G  L  L  Y  *  C  M  E  T  P  E  L  E  K  K  F  N  Y  V  G  R  K  S  Y  C  S  G  N  Y  I  T  Q  S  L  G  H  F  L  S  I  W  L  V  S  T  I  S  Y  K  V  L  I  M  K  S  K  C  I  F  *  V  S  T  F  A  L  I  L  K  W  C  L  Q  R  R  S  N  T  L  V  V  Q  T  T  M  T  L  R  K  *  K  G  K  M  L  N  E  L  L  K  K  P  L  S  A  V  P  L  S  I  *  H  *  P  G  F  D  T  P  D  V  Q  V  V  *  L  L  G  K  G  A  V  A  E  A  V  C  L  I  I  G  F  K  *  K  L  *  Q  F  A  Y  F  L  F  *  V  *  *  L  V  A  S  P  L  N  H  S  Q  C  *  S  Y  C  M  I  K  *  E  N  L  L  T  C  I  L  D  Y  R  H  L  H  F  *  R  L  I  P  D  L  V  R  Q  T  *  F  L  A  *  S  L  Q  I  Q  L  I  F  V  S  F  G  F  C  F  S  H  W  L  I  L  Y  W  T  R  *  E  I  F  L  D  E  S  C  L  K  I  M  S  V  V  V  A  T  *  M  K  N  L  S  K  H  L  Q  F  C  C  L  L  *  K  L  N  S  F  *  R  C  F  W  L  V  S  *  V  T  V  Y  L  S  V  *  V  S  R  M  S  L  L  T  F  L  L  L  N  S  I  Y  I  Y  C  L  L  G  E  L  Y  S  L  F  S  L  L  C  I  D  L  V  L  F  L  K  T  L  S  D  L  F  F  I  K  N  F  T  G  L  F  S  L  *  R  L  L  C  C  F  R  D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  R  R  L  A  G  L  P  *  G  V  F  I  P  C  C  F  N  P  *  S  L  L  E  *  K  K  K  S  C  T  D  G  M  K  C  A  *  I  Q  S  L  Y  K  D  F  F  Y  I  F  G  S  K  *  C  G  F  K  D  Y  F  I  D  A  W  K  L  R  S  W  R  K  S  S  I  M  *  V  G  S  L  I  V  Q  E  I  I  *  P  K  A  *  G  I  S  S  R  S  G  *  L  A  P  S  H  I  R  C  L  L  *  R  A  N  V  F  F  E  L  V  H  L  P  L  S  *  N  G  A  Y  K  E  D  Q  I  P  W  L  F  K  Q  P  *  L  *  G  N  E  K  G  R  C  *  M  S  C  *  R  N  L  S  L  L  F  P  *  V  F  D  T  N  L  D  L  T  H  Q  M  F  K  W  C  D  C  L  G  K  G  L  *  L  K  Q  F  V  *  *  L  G  L  N  R  S  Y  N  S  L  H  I  S  Y  F  K  S  D  D  *  *  R  L  H  L  T  I  V  N  V  D  P  T  A  *  S  N  R  R  I  C  L  H  V  Y  S  T  I  G  I  C  I  F  S  D  *  F  Q  I  L  L  G  R  H  S  F  *  P  S  L  C  R  S  S  *  S  L  *  A  L  D  F  A  S  L  T  G  L  F  C  I  G  R  D  E  K  F  F  L  M  S  L  V  *  R  *  C  L  L  *  L  P  P  E  *  R  T  *  V  N  T  C  S  S  V  V  F  C  E  N  *  I  H  F  R  G  V  F  G  W  *  V  E  *  R  S  I  C  L  F  K  Y  L  E  C  H  C  L  P  F  C  S  *  I  P  S  I  F  T  V  Y  L  E  N  C  I  A  Y  F  L  C  F  V  L  T  L  F  C  F  *  K  L  Y  R  T  F  S  S  S  R  T  S  L  D  S  F  L  Y  D  V  F  Y  A  V  S  E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   G  D  *  L  G  S  H  E  A  F  S  F  H  A  A  S  T  H  E  V  C  W  S  K  K  K  N  P  A  R  M  E  *  N  V  P  E  Y  S  R  Y  I  R  I  F  F  I  Y  L  A  L  S  S  V  V  S  R  I  T  L  L  M  H  G  N  S  G  V  G  E  K  V  Q  L  C  R  S  E  V  L  L  F  R  K  L  Y  N  P  K  L  R  A  F  P  L  D  L  A  S  *  H  H  L  I  *  G  A  Y  Y  E  E  Q  M  Y  F  L  S  *  Y  I  C  P  Y  L  K  M  V  L  T  K  K  I  K  Y  L  G  C  S  N  N  H  D  F  E  E  M  K  R  E  D  V  E  *  V  A  K  E  T  S  L  C  C  S  L  K  Y  L  T  L  T  W  I  *  H  T  R  C  S  S  G  V  I  A  W  E  R  G  C  S  *  S  S  L  F  D  N  W  V  *  I  E  A  I  T  V  C  I  F  L  I  L  S  L  M  I  S  S  V  S  T  *  P  *  S  M  L  I  L  L  H  D  Q  I  G  E  F  A  Y  M  Y  T  R  L  *  A  F  A  F  L  A  T  N  S  R  S  C  *  A  D  I  V  F  S  L  V  F  A  D  P  V  N  L  C  E  L  W  I  L  L  L  S  L  A  Y  F  V  L  D  E  M  R  N  F  S  *  *  V  L  F  K  D  N  V  C  C  S  C  H  L  N  E  E  L  K  *  T  P  A  V  L  L  S  F  V  K  T  K  F  I  L  E  V  F  L  V  G  K  L  S  N  G  L  F  V  C  L  S  I  *  N  V  I  A  Y  L  F  A  P  K  F  H  L  Y  L  L  F  T  W  R  T  V  *  L  I  F  F  A  L  Y  *  P  C  F  V  S  E  N  F  I  G  P  F  L  H  Q  E  L  H  W  T  L  F  F  M  T  S  S  M  L  F  Q  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15835" stop="16162"/>
                    <exon start="16578" stop="16924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLCCFRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14721" stop="14921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPEYSRYIRIFFIYLALSSVVSRITLLMHGNSGVGEKVQLCRSEVLLFRKLYNPKLRAFPLDLAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11416" e_stop="11549"/>
            <exon e_start="15855" e_stop="16162"/>
            <exon e_start="16578" e_stop="17124"/>
            <exon e_start="18365" e_stop="18383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.786" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11416" e_stop="11549" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.786" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11550" i_stop="15854" i_length="4305"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="15855" e_stop="16162" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="16578" e_stop="17124" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="18365" e_stop="18383" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="11549"/>
              <exon start="15855" stop="16162"/>
              <exon start="16578" stop="16810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="11549"/>
              <exon start="15855" stop="16162"/>
              <exon start="16578" stop="16776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="11549"/>
              <exon start="15855" stop="16020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15939" stop="16162"/>
              <exon start="16578" stop="17066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419624" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15963" stop="16162"/>
              <exon start="16578" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16073" stop="16162"/>
              <exon start="16578" stop="17124"/>
              <exon start="18365" stop="18383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537428" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16093" stop="16162"/>
              <exon start="16578" stop="17096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395748" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> S  N  L  P  I  *  R  H  Y  R  R  I  T  V  L  H  L  R  N  F  A  P  I  A  S  S  P  S  *  L  E  E  K  Q  W  N  F  L  H  I  L  I  L  K  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  Q  I  F  Q  F  D  A  I  T  D  A  S  Q  F  S  I  F  V  T  L  H  Q  S  H  H  H  H  H  D  *  R  R  N  S  G  I  S  F  I  F  S  S  *  K   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   K  S  S  N  L  T  P  L  Q  T  H  H  S  S  P  S  S  *  L  C  T  N  R  I  I  T  I  M  I  R  G  E  T  V  E  F  P  S  Y  S  H  L  K  K  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11503" stop="11549"/>
                    <exon start="15855" stop="16162"/>
                    <exon start="16578" stop="16924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEEKQWNFLHILILKRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14296" e_stop="14465"/>
            <exon e_start="15855" e_stop="16162"/>
            <exon e_start="16578" e_stop="17124"/>
            <exon e_start="18365" e_stop="18383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14296" e_stop="14465" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14466" i_stop="15854" i_length="1389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15855" e_stop="16162" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16163" i_stop="16577" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="16578" e_stop="17124" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="17125" i_stop="18364" i_length="1240"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="18365" e_stop="18383" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14296" stop="14465"/>
              <exon start="15855" stop="16123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15939" stop="16162"/>
              <exon start="16578" stop="17066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419624" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15963" stop="16162"/>
              <exon start="16578" stop="17064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16073" stop="16162"/>
              <exon start="16578" stop="17124"/>
              <exon start="18365" stop="18383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537428" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16093" stop="16162"/>
              <exon start="16578" stop="17096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395748" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> E  G  I  T  T  T  A  K  P  E  P  P  E  N  S  K  D  F  K  Q  L  V  Q  N  A  F  F  R  F  V  R  H  L  N  E  T  P  A  K  R  R  K  F  S  E  Q  A  G  S  L  K  C  L  V  C  G  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  K  V  L  L  L  Q  Q  N  L  N  L  L  R  T  L  R  I  L  S  S  W  S  K  M  P  S  S  G  S  *  G  T  *  M  R  L  Q  L  K  E  E  N  S  V  S  K  L  V  V  *  S  A  S  C  V  A   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   R  Y  Y  Y  Y  S  K  T  *  T  S  *  E  L  *  G  F  *  A  A  G  P  K  C  L  L  Q  V  R  E  A  L  E  *  D  S  S  *  K  K  K  I  Q  *  A  S  W  *  F  K  V  P  R  V  W  Q  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14296" stop="14465"/>
                    <exon start="15855" stop="16162"/>
                    <exon start="16578" stop="16924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGITTTAKPEPPENSKDFKQLVQNAFFRFVRHLNETPAKRRKFSEQAGSLKCLVCGRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="13524" e_stop="13729"/>
            <exon e_start="13803" e_stop="14174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="13524" e_stop="13729" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13730" i_stop="13802" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="13803" e_stop="14174" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13524" stop="13729"/>
              <exon start="13803" stop="14174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13524" stop="13729"/>
              <exon start="13803" stop="14084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAG : AGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGG</gDNA_template>
            <first_frame> G  L  F  *  V  P  Q  S  T  R  P  K  K  A  R  F  G  H  I  G  L  W  G  *  S  S  T  V  *  K  *  I  T  S  R  L  *  K  L  P  *  K  R  A  S  *  V  S  D  G  *  *  S  S  R  K  I  *  C  L  V  *  R  I  R  P  P  F  R :   E  K  H  G  T  M  S  N  H  G  A  G  I  M  I  S  S  D  I  R  T  A  H  I  T  H  D  R  G  D  A  D  K  M  R  I  S  R  D  M  D  S  V  V  M  S  R  K  P  N  V  P  R  S  K  Y  A  K  N  G  R  P  H  K  A  T  A  T  I  S  S  T  R  N  L  S  V  S  M  L  R  R  T  S  K  F  S  K  S  G  G  S  D  I  K  K  R  L  G  P  R  Y  Q  N  V  D  V  E  R  P  L  G  T  K  Y  K  S  S  L  K  K  R  L   </first_frame>
            <second_frame>  D  Y  F  E  S  R  R  A  L  D  Q  R  K  P  D  L  D  I  L  D  Y  G  A  N  R  L  Q  Y  E  N  E  S  H  R  G  Y  E  S  S  R  K  R  E  L  H  K  Y  Q  M  D  D  D  L  L  E  R  S  D  A  L  Y  R  E  Y  D  P  H  L   : E  K  N  M  A  Q  *  A  I  M  V  P  E  L  *  F  Q  V  I  *  G  L  H  T  *  P  M  T  V  E  M  L  I  K  C  G  S  V  G  I  W  I  L  *  L  C  L  E  S  Q  M  F  H  A  L  N  M  R  R  M  V  G  H  T  K  P  L  Q  L  L  V  P  P  E  T  F  Q  C  Q  C  *  D  V  Q  A  N  L  V  N  L  V  E  V  I  *  R  S  G  W  G  H  V  T  R  M  L  M  L  N  A  H  *  E  Q  N  I  N  L  H  *  R  S  A  W  </second_frame>
            <third_frame>   I  I  L  S  P  A  E  H  *  T  K  E  S  Q  I  W  T  Y  W  I  M  G  L  I  V  Y  S  M  K  M  N  H  I  E  A  M  K  A  P  V  K  E  S  F  I  S  I  R  W  M  M  I  F  *  K  D  L  M  P  C  I  E  N  T  T  P  I  *  :  R  K  T  W  H  N  E  Q  S  W  C  R  N  Y  D  F  K  *  Y  K  D  C  T  H  N  P  *  P  W  R  C  *  *  N  A  D  Q  *  G  Y  G  F  C  S  Y  V  *  K  A  K  C  S  T  L  *  I  C  E  E  W  *  A  T  Q  S  H  C  N  Y  *  F  H  Q  K  P  F  S  V  N  V  E  T  Y  K  Q  I  *  *  I  W  W  K  *  Y  K  E  A  A  G  A  T  L  P  E  C  *  C  *  T  P  T  R  N  K  I  *  I  F  T  E  E  A  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13710" stop="13729"/>
                    <exon start="13803" stop="14172"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRPPFREKHGTMSNHGAGIMISSDIRTAHITHDRGDADKMRISRDMDSVVMSRKPNVPRSKYAKNGRPHKATATISSTRNLSVSMLRRTSKFSKSGGSDIKKRLGPRYQNVDVERPLGTKYKSSLKKRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17075" PGL_stop="16658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17075" e_stop="16658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="17075" e_stop="16658" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17075" stop="16658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGATGATATTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</gDNA_template>
            <first_frame> Y  D  D  I  W  V  Y  L  L  S  S  S  *  I  A  K  Y  N  *  L  Q  A  K  A  K  P  K  A  K  V  S  S  Y  H  S  E  H  I  F  L  P  C  Q  T  K  T  W  S  F  L  L  M  V  Q  L  Q  *  P  *  S  A  S  C  S  S  Q  N  F  V  S  S  F  R  N  Q  L  C  P  G  L  L  Q  F  Q  G  N  H  K  G  F  Y  L  L  C  L  S  M  V  L  *  F  H  R  H  C  F  Q  T  D  Q  N  L  Y  A  G  N  P  P  F  H  A  S  D  G  R  R  Y  H  T  V  S  L  L  L  P  N  L  R  E  </first_frame>
            <second_frame>  M  M  I  F  G  C  I  Y  F  H  Q  V  R  *  Q  N  I  I  S  C  K  Q  K  Q  N  P  K  P  K  C  L  A  I  I  Q  N  I  Y  F  C  P  A  K  L  K  L  G  L  S  F  S  W  C  N  C  N  N  L  D  L  L  L  A  P  H  R  T  S  F  L  R  F  E  I  N  F  V  Q  V  F  C  N  S  K  V  T  I  K  D  F  T  Y  F  V  C  Q  W  F  F  S  F  I  V  I  V  S  R  L  T  R  T  Y  T  L  E  I  R  P  S  M  L  P  M  G  V  D  I  T  Q  S  H  C  F  F  Q  T  *  E  S </second_frame>
            <third_frame>   *  *  Y  L  G  V  S  T  F  I  K  L  D  S  K  I  *  L  A  A  S  K  S  K  T  Q  S  Q  S  V  *  L  S  F  R  T  Y  I  F  A  L  P  N  *  N  L  V  F  P  S  H  G  A  T  A  I  T  L  I  C  F  L  L  L  T  E  L  R  F  F  V  S  K  S  T  L  S  R  S  S  A  I  P  R  *  P  *  R  I  L  P  T  L  S  V  N  G  S  L  V  S  S  S  L  F  P  D  *  P  E  L  I  R  W  K  S  A  L  P  C  F  R  W  A  *  I  S  H  S  L  T  A  S  S  K  P  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17032" stop="16664"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNIISCKQKQNPKPKCLAIIQNIYFCPAKLKLGLSFSWCNCNNLDLLLAPHRTSFLRFEINFVQVFCNSKVTIKDFTYFVCQWFFSFIVIVSRLTRTYTLEIRPSMLPMGVDITQSHCFFQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="35438" PGL_stop="30817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35438" e_stop="35353"/>
            <exon e_start="32268" e_stop="32169"/>
            <exon e_start="32069" e_stop="31882"/>
            <exon e_start="31121" e_stop="30817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35438" e_stop="35353" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35352" i_stop="32269" i_length="3084"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32268" e_stop="32169" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32069" e_stop="31882" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31121" e_stop="30817" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35438" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35438" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="31029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35437" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35437" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35435" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35432" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35430" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35419" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35413" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35387" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35387" stop="35353"/>
              <exon start="32268" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32181" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420584" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG : CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGACTTTCAGACTATTTTT</gDNA_template>
            <first_frame> Q  K  T  E  K  H  T  S  R  S  C  S  S  S  L  P  E  P  A  I  G  D  T  S  V  H  S  R  S :   *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V  K  V  V  Q  V  V  T  N  L  L  F  Q  *  L  Y  V  M  R  S  D  V  L  T  G  F  S  K  H  *  K  P  F  V  C  N  D  Q  G  *  *  W  I  I  Q  S  L  T  F  Y  P  T  *  L  S  D  Y  F  </first_frame>
            <second_frame>  R  K  R  R  S  I  L  P  V  V  V  A  V  A  C  R  S  R  R  S  E  I  L  P  S  I  A  E   : A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M  S  R  L  C  K  W  *  L  I  C  F  S  N  S  C  M  L  *  D  Q  M  F  L  L  A  F  Q  S  I  R  N  L  L  S  V  M  T  K  D  S  D  G  L  F  S  L  *  P  F  I  L  L  D  F  Q  T  I  F </second_frame>
            <third_frame>   E  N  G  E  A  Y  F  P  *  L  *  Q  *  L  A  G  A  G  D  R  R  Y  F  R  P  *  P  K  :  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  Q  G  C  A  S  G  D  *  F  A  F  P  I  A  V  C  Y  E  I  R  C  S  Y  W  L  F  K  A  L  E  T  F  C  L  *  *  P  R  I  V  M  D  Y  S  V  F  N  L  L  S  Y  L  T  F  R  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35358" stop="35353"/>
                    <exon start="32268" stop="32169"/>
                    <exon start="32069" stop="31882"/>
                    <exon start="31121" stop="30966"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGCQGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32272" e_stop="32169"/>
            <exon e_start="32069" e_stop="31882"/>
            <exon e_start="31121" e_stop="30828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="32272" e_stop="32169" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32168" i_stop="32070" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32069" e_stop="31882" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31881" i_stop="31122" i_length="760"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31121" e_stop="30828" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32272" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309096" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32181" stop="32169"/>
              <exon start="32069" stop="31882"/>
              <exon start="31121" stop="30828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420584" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTACTTGACTTTC</gDNA_template>
            <first_frame> A  A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M  S  R  L  C  K  W  *  L  I  C  F  S  N  S  C  M  L  *  D  Q  M  F  L  L  A  F  Q  S  I  R  N  L  L  S  V  M  T  K  D  S  D  G  L  F  S  L  *  P  F  I  L  L  D  F  </first_frame>
            <second_frame>  Q  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  Q  G  C  A  S  G  D  *  F  A  F  P  I  A  V  C  Y  E  I  R  C  S  Y  W  L  F  K  A  L  E  T  F  C  L  *  *  P  R  I  V  M  D  Y  S  V  F  N  L  L  S  Y  L  T  F </second_frame>
            <third_frame>   S  *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V  K  V  V  Q  V  V  T  N  L  L  F  Q  *  L  Y  V  M  R  S  D  V  L  T  G  F  S  K  H  *  K  P  F  V  C  N  D  Q  G  *  *  W  I  I  Q  S  L  T  F  Y  P  T  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32271" stop="32169"/>
                    <exon start="32069" stop="31882"/>
                    <exon start="31121" stop="30966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGCQGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40122" PGL_stop="44502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40122" e_stop="40143"/>
            <exon e_start="40264" e_stop="40376"/>
            <exon e_start="40784" e_stop="40901"/>
            <exon e_start="41738" e_stop="41812"/>
            <exon e_start="41883" e_stop="42102"/>
            <exon e_start="42758" e_stop="42821"/>
            <exon e_start="44446" e_stop="44502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.381" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.988" acc_prob="0.951" e_score="0.975"/>
          <exon-intron don_prob="0.776" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.879" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="0.668" e_score="0.969"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40122" e_stop="40143" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40144" i_stop="40263" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="40264" e_stop="40376" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.381" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40377" i_stop="40783" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="40784" e_stop="40901" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.951">
            <gDNA_intron_boundary i_start="40902" i_stop="41737" i_length="836"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="41738" e_stop="41812" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.776" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41813" i_stop="41882" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="41883" e_stop="42102" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.879">
            <gDNA_intron_boundary i_start="42103" i_stop="42757" i_length="655"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="42758" e_stop="42821" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.668">
            <gDNA_intron_boundary i_start="42822" i_stop="44445" i_length="1624"/>
          </intron>
          <exon e_serial="7" e_score="0.947">
            <gDNA_exon_boundary e_start="44446" e_stop="44502" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40122" stop="40143"/>
              <exon start="40264" stop="40376"/>
              <exon start="40784" stop="40901"/>
              <exon start="41738" stop="41812"/>
              <exon start="41883" stop="42102"/>
              <exon start="42758" stop="42821"/>
              <exon start="44446" stop="44502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40122" stop="40143"/>
              <exon start="40264" stop="40376"/>
              <exon start="40784" stop="40901"/>
              <exon start="41738" stop="41812"/>
              <exon start="41883" stop="42102"/>
              <exon start="42758" stop="42818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTCCTACTTCTACGACG : GTGATGTAGGAAGCGTATACTTTGGACCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCTTATGGTCTTCACAGCAAGATGGAAGTTTAT : AGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAGTTCTTGAATAGAATAACCCCAGATACTCAGAACTTGTTCCCTAGTGAAATGGCAAGAT : ATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGGACAATAG : ATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGCTTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTGAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCATGGTGATGGTGTAGAAGAGGCCTTTTATTTCACTGACAG : GGTAATGACTGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATGAAG : GATACAGGGGAAAGAGATGGAAGATTCTATTCCATAAATGTGCCTCTCAAGGATGGA</gDNA_template>
            <first_frame> K  I  S  Y  F  Y  D   : G  D  V  G  S  V  Y  F  G  P  N  H  P  M  K  P  H  R  L  C  M  T  H  H  L  V  L  A  Y  G  L  H  S  K  M  E  V  Y  :  R  P  H  K  A  Y  P  V  E  L  A  Q  F  H  S  A  D  Y  V  E  F  L  N  R  I  T  P  D  T  Q  N  L  F  P  S  E  M  A  R   : Y  N  L  G  E  D  C  P  V  F  D  N  L  F  E  F  C  Q  I  Y  A  G  G  T  I   : D  A  A  R  R  L  N  N  K  L  C  D  I  A  I  N  W  A  G  G  L  H  H  A  K  K  C  A  A  S  G  F  C  Y  I  N  D  L  V  L  G  I  L  E  L  L  K  Y  H  P  R  V  L  Y  I  D  I  D  V  H  H  G  D  G  V  E  E  A  F  Y  F  T  D  R :   V  M  T  V  S  F  H  K  Y  G  D  K  F  F  P  G  T  G  D  M  K  :  D  T  G  E  R  D  G  R  F  Y  S  I  N  V  P  L  K  D  G </first_frame>
            <second_frame>  K  S  P  T  S  T  T  :  V  M  *  E  A  Y  T  L  D  R  I  I  Q  *  S  R  T  G  C  V  *  L  I  I  W  F  *  L  M  V  F  T  A  R  W  K  F  I :   G  L  T  K  H  I  Q  W  S  *  R  S  F  I  L  L  I  M  *  S  S  *  I  E  *  P  Q  I  L  R  T  C  S  L  V  K  W  Q  D  :  I  I  L  E  K  I  A  L  Y  L  T  T  Y  S  S  F  V  K  Y  M  L  V  G  Q  *  :  M  L  H  V  D  *  I  I  S  F  V  I  L  Q  *  I  G  L  V  A  C  I  M  P  R  S  V  R  L  Q  D  F  A  I  S  M  T  *  F  W  G  Y  W  S  F  *  S  I  I  R  G  C  S  I  L  I  L  M  C  I  M  V  M  V  *  K  R  P  F  I  S  L  T   : G  *  *  L  L  V  S  T  S  M  G  I  S  S  F  L  E  L  V  I  *  R :   I  Q  G  K  E  M  E  D  S  I  P  *  M  C  L  S  R  M   </second_frame>
            <third_frame>   N  L  L  L  L  R  R :   *  C  R  K  R  I  L  W  T  E  S  S  N  E  A  A  Q  V  V  Y  D  S  S  S  G  S  S  L  W  S  S  Q  Q  D  G  S  L   : *  A  S  Q  S  I  S  S  G  A  S  A  V  S  F  C  *  L  C  R  V  L  E  *  N  N  P  R  Y  S  E  L  V  P  *  *  N  G  K  I :   *  S  W  R  R  L  P  C  I  *  Q  L  I  R  V  L  S  N  I  C  W  W  D  N  R :   C  C  T  *  I  E  *  *  A  L  *  Y  C  N  K  L  G  W  W  L  A  S  C  Q  E  V  C  G  F  R  I  L  L  Y  Q  *  P  S  S  G  D  I  G  A  S  E  V  S  S  A  G  A  L  Y  *  Y  *  C  A  S  W  *  W  C  R  R  G  L  L  F  H  *  Q  :  G  N  D  C  *  F  P  Q  V  W  G  *  V  L  S  W  N  W  *  Y  E   : G  Y  R  G  K  R  W  K  I  L  F  H  K  C  A  S  Q  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40122" stop="40143"/>
                    <exon start="40264" stop="40376"/>
                    <exon start="40784" stop="40901"/>
                    <exon start="41738" stop="41812"/>
                    <exon start="41883" stop="42102"/>
                    <exon start="42758" stop="42821"/>
                    <exon start="44446" stop="44502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVELAQFHSADYVEFLNRITPDTQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="54517" PGL_stop="52163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54517" e_stop="54241"/>
            <exon e_start="53260" e_stop="53232"/>
            <exon e_start="53123" e_stop="52929"/>
            <exon e_start="52835" e_stop="52751"/>
            <exon e_start="52590" e_stop="52515"/>
            <exon e_start="52299" e_stop="52163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.064" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.405" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.787" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54517" e_stop="54241" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54240" i_stop="53261" i_length="980"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53260" e_stop="53232" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.064" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53231" i_stop="53124" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53123" e_stop="52929" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.690">
            <gDNA_intron_boundary i_start="52928" i_stop="52836" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52835" e_stop="52751" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.405" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52750" i_stop="52591" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52590" e_stop="52515" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.787">
            <gDNA_intron_boundary i_start="52514" i_stop="52300" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52299" e_stop="52163" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54517" stop="54241"/>
              <exon start="53260" stop="53232"/>
              <exon start="53123" stop="52929"/>
              <exon start="52835" stop="52751"/>
              <exon start="52590" stop="52515"/>
              <exon start="52299" stop="52232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52579" stop="52515"/>
              <exon start="52299" stop="52163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG : GTTTTGCAGTTATAAAATATCAAATCCAA : TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG : GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG : GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG : GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</gDNA_template>
            <first_frame> S  M  A  R  G  F  L  I  S  T  Q  T  K  N  S  S  H  F  L  L  N  S  I  S  E  T  S  R  L  T  K  L  P  Y  Y  P  S  S  S  S  L  R  F  S  L  S  P  P  P  S  P  P  R  F  L  C  S  C  C  S  H  F  Q  E  N  G  T  I  D  M  S  V  H  S  E  A  F  A  K  R  M  A  M  V  G  L  K  P  H  H  R  I   : G  F  A  V  I  K  Y  Q  I  Q  :  F  W  A  F  L  V  A  L  I  A  W  P  S  V  S  *  L  L  H  G  K  P  I  T  L  V  M  L  L  K  R  M  S  L  L  T  G  F  *  Q  W  *  L  I  M  D  F  V  L  R  V  K  M  K  L  T  L  F  I  V  E  S  Q  A  W  :  E  S  N  V  R  L  F  A  V  N  G  Q  K  A  S  Q  S  R  V  T  C  K  K  L  L  A  R  R   : G  M  K  F  S  K  V  L  A  S  G  I  R  L  V  C  *  *  L  H  T  M  Q  M  T  R :   Q  N  Y  S  F  L  G  Y  L  A  V  V  A  C  L  D  S  L  E  W  H  L  F  Q  S  C  F  L  H  V  Q  I  *  V  L  K  *  V  A  M  D  F  Y  W  *  </first_frame>
            <second_frame>  Q  W  R  E  A  S  *  F  L  H  K  P  K  I  L  H  I  F  F  *  T  P  F  L  K  L  Q  D  *  L  N  Y  P  I  T  L  L  H  H  L  S  V  S  L  F  H  L  L  L  L  H  L  G  F  C  A  V  V  A  V  T  S  K  K  M  A  Q  L  T  C  Q  Y  T  Q  R  H  L  Q  S  V  W  L  W  W  V  S  N  P  I  I  V  L  :  V  L  Q  L  *  N  I  K  S  N :   S  G  R  F  W  W  P  *  *  H  G  P  L  C  L  N  C  C  M  E  N  Q  *  P  W  *  C  C  S  K  E  *  V  C  *  R  A  F  S  S  G  S  *  S  W  T  S  C  *  E  *  R  *  S  S  P  C  S  S  S  S  H  K  H  G :   N  Q  M  *  D  C  L  L  *  M  V  R  R  Q  A  K  A  G  S  L  A  R  S  C  S  P  E  E  :  V  *  N  S  P  K  C  L  H  P  A  S  D  W  C  V  D  D  C  T  P  C  R  *  P   : G  R  T  I  H  S  *  V  I  S  Q  *  W  R  A  W  T  R  W  N  G  I  C  F  R  A  V  F  Y  M  S  R  F  K  C  *  S  E  *  Q  W  T  F  I  G  E </second_frame>
            <third_frame>   N  G  A  R  L  L  D  F  Y  T  N  Q  K  F  F  T  F  S  S  K  L  H  F  *  N  F  K  I  N  *  I  T  L  L  P  F  F  I  I  S  P  F  L  S  F  T  S  S  F  S  T  S  V  S  V  Q  L  L  Q  S  L  P  R  K  W  H  N  *  H  V  S  T  L  R  G  I  C  K  A  Y  G  Y  G  G  S  Q  T  P  S  S  Y  W :   F  C  S  Y  K  I  S  N  P   : I  L  G  V  S  G  G  P  D  S  M  A  L  C  V  L  T  A  A  W  K  T  N  N  L  G  N  A  A  Q  K  N  E  F  V  D  G  L  L  A  V  V  V  D  H  G  L  R  A  E  S  K  D  E  A  H  L  V  H  R  R  V  T  S  M   : G  I  K  C  E  I  V  C  C  E  W  S  E  G  K  P  K  Q  G  H  L  Q  E  A  A  R  Q  K  R :   Y  E  I  L  Q  S  A  C  I  R  H  Q  I  G  V  L  M  T  A  H  H  A  D  D  Q  :  A  E  L  F  I  L  R  L  S  R  S  S  G  V  L  G  L  A  G  M  A  S  V  S  E  L  F  F  T  C  P  D  L  S  A  E  V  S  S  N  G  L  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54311" stop="54241"/>
                    <exon start="53260" stop="53232"/>
                    <exon start="53123" stop="52929"/>
                    <exon start="52835" stop="52751"/>
                    <exon start="52590" stop="52515"/>
                    <exon start="52299" stop="52165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVSTLRGICKAYGYGGSQTPSSYWFCSYKISNPILGVSGGPDSMALCVLTAAWKTNNLGNAAQKNEFVDGLLAVVVDHGLRAESKDEAHLVHRRVTSMGIKCEIVCCEWSEGKPKQGHLQEAARQKRYEILQSACIRHQIGVLMTAHHADDQAELFILRLSRSSGVLGLAGMASVSELFFTCPDLSAEVSSNGLLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58552" PGL_stop="59180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58552" e_stop="59180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58552" e_stop="59180" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58552" stop="59180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58699" stop="59106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATT</gDNA_template>
            <first_frame> C  H  S  Q  K  C  S  N  I  E  *  N  R  T  C  K  E  I  H  *  Q  Q  K  R  *  V  D  Y  C  K  H  E  L  F  S  A  D  C  G  M  H  K  N  E  E  A  *  N  S  *  K  S  N  *  D  C  G  K  T  L  I  Q  R  *  V  A  *  V  L  R  Y  K  A  R  R  V  H  W  E  T  S  T  S  V  S  D  M  D  Y  C  R  I  S  S  G  K  A  A  Y  C  Q  S  R  G  C  K  D  G  N  Q  C  G  G  Y  R  T  S  K  C  F  F  K  H  S  E  F  K  P  K  A  K  T  I  T  K  R  S  *  T  V  L  H  H  M  K  V  L  F  L  L  L  K  P  *  V  C  T  I  D  L  R  *  T  Q  M  E  *  *  L  S  V  E  I  H  I  V  D  P  Q  S  A  R  D  *  S  I  L  C  C  Y  L  K  L  L  Y  S  Y  Y  I  S  A  R  Y  T  Y  *  C  *  K   </first_frame>
            <second_frame>  V  I  H  R  N  V  L  T  *  S  R  I  E  H  V  K  R  Y  I  D  S  R  K  D  E  L  I  I  V  N  M  N  C  F  Q  L  T  V  A  C  I  K  M  K  R  P  E  I  A  E  K  A  I  K  I  A  E  R  R  L  S  R  D  R  W  P  E  Y  Y  D  T  R  R  G  G  F  I  G  K  Q  A  R  L  F  Q  T  W  T  I  A  G  Y  L  V  A  K  L  L  I  A  N  P  E  A  A  K  M  V  I  N  V  E  D  T  E  L  L  S  A  F  S  S  I  L  S  S  N  P  R  R  K  R  S  R  K  G  V  K  Q  S  F  I  I  *  K  F  Y  F  C  Y  L  S  L  K  C  V  L  L  T  *  D  E  L  K  W  N  D  N  C  Q  W  R  F  I  *  S  T  P  K  V  L  E  I  E  A  Y  C  V  V  T  *  S  F  C  I  V  T  I  Y  L  R  D  I  H  T  S  V  E  N  </second_frame>
            <third_frame>   S  F  T  E  M  F  *  H  R  V  E  S  N  M  *  R  D  T  L  T  A  E  K  M  S  *  L  L  *  T  *  T  V  F  S  *  L  W  H  A  *  K  *  R  G  L  K  *  L  K  K  Q  L  R  L  R  K  D  A  Y  P  E  I  G  G  L  S  T  T  I  Q  G  E  E  G  S  L  G  N  K  H  V  C  F  R  H  G  L  L  Q  D  I  *  W  Q  S  C  L  L  P  I  Q  R  L  Q  R  W  *  S  M  W  R  I  Q  N  F  *  V  L  F  Q  A  F  *  V  Q  T  Q  G  E  N  D  H  E  K  E  L  N  S  P  S  S  Y  E  S  F  I  F  V  T  *  A  L  S  V  Y  Y  *  P  E  M  N  S  N  G  M  I  I  V  S  G  D  S  Y  S  R  P  P  K  C  S  R  L  K  H  T  V  L  L  P  K  A  F  V  *  L  L  Y  I  C  A  I  Y  I  L  V  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58580" stop="58984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIEHVKRYIDSRKDELIIVNMNCFQLTVACIKMKRPEIAEKAIKIAERRLSRDRWPEYYDTRRGGFIGKQARLFQTWTIAGYLVAKLLIANPEAAKMVINVEDTELLSAFSSILSSNPRRKRSRKGVKQSFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="74786" PGL_stop="79183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74786" e_stop="75201"/>
            <exon e_start="79053" e_stop="79183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.957"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="74786" e_stop="75201" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75202" i_stop="79052" i_length="3851"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="79053" e_stop="79183" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74786" stop="75201"/>
              <exon start="79053" stop="79183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAG : GTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCT</gDNA_template>
            <first_frame> V  I  L  T  G  T  P  L  H  G  V  F  Q  L  L  L  R  R  Q  F  L  *  L  I  S  D  F  S  I  D  *  D  P  A  I  *  V  P  F  F  S  R  K  S  K  L  L  R  *  R  R  F  R  N  R  R  R  Y  R  R  T  L  Q  R  K  L  W  I  R  R  N  L  R  A  V  I  R  K  E  E  R  G  L  N  G  K  Y  L  K  C  *  I  I  L  S  F  P  R  F  M  L  L  L  I  H  R  N  G  R  V  Y  *  R  S  F  A  P  A  V  I  Y  T  Y  S  G  N  V  K  P  A  K  R  F  H  E  S  A  V  R :   F  Y  V  S  E  V  V  V  A  L  E  Y  I  H  M  M  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  S  D  G  H  I  M  L  T  D  F  D  L  </first_frame>
            <second_frame>  *  S  L  L  G  R  H  Y  T  G  Y  F  N  F  Y  F  V  G  N  F  S  N  *  S  P  I  S  P  S  I  R  I  R  R  Y  R  F  R  F  S  R  G  N  Q  S  C  S  G  N  G  D  F  E  I  D  G  G  I  G  V  L  C  S  E  S  Y  G  *  E  G  T  C  E  P  *  *  G  R  K  S  E  D  *  T  G  N  T  *  N  V  R  S  S  F  P  S  H  A  L  C  F  Y  *  F  T  E  M  V  V  F  I  N  G  V  L  P  R  R  *  F  T  R  T  P  A  T  S  N  R  R  N  A  S  M  N  P  L  S   : G  S  M  C  R  R  W  W  W  R  W  S  T  F  T  *  W  E  *  F  T  A  T  *  N  L  K  M  F  W  S  D  Q  M  V  I  S  C  S  R  T  L  I  S </second_frame>
            <third_frame>   D  P  Y  W  D  A  I  T  R  G  I  S  T  S  T  S  S  A  I  S  L  T  D  L  R  F  L  H  R  L  G  S  G  D  I  G  S  V  F  L  A  E  I  K  A  A  P  V  T  E  I  S  K  S  T  A  V  S  A  Y  F  A  A  K  V  M  D  K  K  E  L  A  S  R  N  K  E  G  R  A  R  T  E  R  E  I  L  E  M  L  D  H  P  F  L  P  T  L  Y  A  S  I  D  S  P  K  W  S  C  L  L  T  E  F  C  P  G  G  D  L  H  V  L  R  Q  R  Q  T  G  E  T  L  P  *  I  R  C  Q  :  V  L  C  V  G  G  G  G  G  V  G  V  H  S  H  D  G  N  S  L  P  R  L  E  T  *  K  C  F  G  P  I  R  W  S  Y  H  A  H  G  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74788" stop="75189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPYWDAITRGISTSTSSAISLTDLRFLHRLGSGDIGSVFLAEIKAAPVTEISKSTAVSAYFAAKVMDKKELASRNKEGRARTEREILEMLDHPFLPTLYASIDSPKWSCLLTEFCPGGDLHVLRQRQTGETLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="79374" PGL_stop="80475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79374" e_stop="80475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79374" e_stop="80475" e_length="1102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79374" stop="79760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79374" stop="79531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79463" stop="80163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79796" stop="80475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79797" stop="80303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79800" stop="80274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80149" stop="80452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAGGACATGCTGGTGGCCCTGAATTTGTAGCTGAACCAGTCGATGTTCGTTCCATGTCCTTCGTGGGAACTCACGAGTATTTGGCACCAGAGATTGTATCAGGTGAAGGTCATGGTAGTGCAGTAGATTGGTGGACACTAGGGATATTCATATTTGAGTTGCTATATGGAGTAACACCTTTTAAAGGTATAGACCATGAACTAACCCTAGCTAACATCGTTGCCCGAGCCCTCGAATTCCCTAAGGAACCATCAATGCCAGCCCCAGTTAAAGACCTGATATCACAACTCCTTACTAAGGATCCCGCGCGAAGAATGGGATCAACTATGGGTGCTACAGCAATCAAACACCATCCATTCTTCCAAGGAGTCAATTGGGCACTTCTAAGATGTACTTCACCACCATTCATTCCTCCTCCATTCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</gDNA_template>
            <first_frame> G  R  T  C  W  W  P  *  I  C  S  *  T  S  R  C  S  F  H  V  L  R  G  N  S  R  V  F  G  T  R  D  C  I  R  *  R  S  W  *  C  S  R  L  V  D  T  R  D  I  H  I  *  V  A  I  W  S  N  T  F  *  R  Y  R  P  *  T  N  P  S  *  H  R  C  P  S  P  R  I  P  *  G  T  I  N  A  S  P  S  *  R  P  D  I  T  T  P  Y  *  G  S  R  A  K  N  G  I  N  Y  G  C  Y  S  N  Q  T  P  S  I  L  P  R  S  Q  L  G  T  S  K  M  Y  F  T  T  I  H  S  S  S  I  Q  *  R  I  S  L  *  W  K  L  P  *  Y  L  S  *  I  L  L  A  Y  I  P  Q  T  L  Q  K  Y  C  C  T  R  I  R  S  Y  Y  *  L  V  *  I  K  T  Q  K  K  S  K  I  L  D  Q  K  R  M  E  E  E  E  R  S  D  L  W  W  T  F  V  G  S  *  *  I  L  T  H  Q  Y  E  Y  E  A  I  *  I  Q  Q  R  H  *  F  L  L  L  F  A  S  Q  C  S  I  V  H  C  Y  Y  Y  R  W  T  K  K  G  R  F  I  F  *  I  F  Y  K  S  M  P  L  S  K  T  L  D  P  D  K  I  H  V  D  N  C  Y  T  S  K  G  P  G  C  V  K  D  L  V  G  W  W  K  V  K  N  M  G  Q  H  H  V  F  A  N  L  V  L  F  L  V  E  K  H  D  V  S  M  *  F  V  *  L  L  G  S  C  K  V  V  G  *  *  L  V  M  G  G  C  L  V  N  F  I  N  Y  I  K  I  F  S  T  *  I  I  I  M  V  F  I  </first_frame>
            <second_frame>  A  G  H  A  G  G  P  E  F  V  A  E  P  V  D  V  R  S  M  S  F  V  G  T  H  E  Y  L  A  P  E  I  V  S  G  E  G  H  G  S  A  V  D  W  W  T  L  G  I  F  I  F  E  L  L  Y  G  V  T  P  F  K  G  I  D  H  E  L  T  L  A  N  I  V  A  R  A  L  E  F  P  K  E  P  S  M  P  A  P  V  K  D  L  I  S  Q  L  L  T  K  D  P  A  R  R  M  G  S  T  M  G  A  T  A  I  K  H  H  P  F  F  Q  G  V  N  W  A  L  L  R  C  T  S  P  P  F  I  P  P  P  F  S  K  E  F  L  S  D  G  S  C  P  D  T  S  V  E  Y  Y  *  P  I  S  L  R  L  F  R  N  I  V  A  L  V  S  D  P  T  T  N  *  C  E  *  R  L  K  K  S  Q  K  F  W  T  R  K  E  W  K  K  K  K  E  V  I  C  G  G  L  L  L  D  L  N  E  Y  *  P  T  N  M  N  M  R  L  Y  E  Y  N  K  D  I  S  F  C  C  C  L  L  A  N  A  L  L  Y  I  A  I  I  I  G  G  Q  R  K  E  G  S  F  S  K  S  F  I  S  Q  C  L  C  L  K  H  W  I  L  T  K  Y  M  *  T  I  V  T  Q  A  K  G  L  V  V  *  R  I  W  L  G  G  G  R  S  R  I  W  V  S  I  M  F  L  L  I  L  F  F  S  L  W  K  S  M  M  F  P  C  D  L  F  N  Y  *  D  L  V  R  L  *  G  S  S  *  S  W  V  G  A  L  *  I  S  *  I  T  *  K  Y  F  P  H  K  *  L  S  W  Y  L  L </second_frame>
            <third_frame>   Q  D  M  L  V  A  L  N  L  *  L  N  Q  S  M  F  V  P  C  P  S  W  E  L  T  S  I  W  H  Q  R  L  Y  Q  V  K  V  M  V  V  Q  *  I  G  G  H  *  G  Y  S  Y  L  S  C  Y  M  E  *  H  L  L  K  V  *  T  M  N  *  P  *  L  T  S  L  P  E  P  S  N  S  L  R  N  H  Q  C  Q  P  Q  L  K  T  *  Y  H  N  S  L  L  R  I  P  R  E  E  W  D  Q  L  W  V  L  Q  Q  S  N  T  I  H  S  S  K  E  S  I  G  H  F  *  D  V  L  H  H  H  S  F  L  L  H  S  V  K  N  F  S  L  M  E  V  A  L  I  P  Q  L  N  T  T  S  L  Y  P  S  D  S  S  E  I  L  L  H  S  Y  Q  I  L  L  L  T  S  V  N  K  D  S  K  K  V  K  N  F  G  P  E  K  N  G  R  R  R  K  K  *  F  V  V  D  F  C  W  I  L  M  N  I  D  P  P  I  *  I  *  G  Y  M  N  T  T  K  T  L  V  F  V  V  V  C  *  P  M  L  Y  C  T  L  L  L  L  *  V  D  K  E  R  K  V  H  F  L  N  L  L  *  V  N  A  F  V  *  N  I  G  S  *  Q  N  T  C  R  Q  L  L  H  K  Q  R  A  W  L  C  E  G  F  G  W  V  V  E  G  Q  E  Y  G  S  A  S  C  F  C  *  S  C  S  F  P  C  G  K  A  *  C  F  H  V  I  C  L  I  I  R  I  L  *  G  C  R  V  V  A  S  H  G  W  V  P  C  E  F  H  K  L  H  K  N  I  F  H  I  N  N  Y  H  G  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79375" stop="79854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGHAGGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELLYGVTPFKGIDHELTLANIVARALEFPKEPSMPAPVKDLISQLLTKDPARRMGSTMGATAIKHHPFFQGVNWALLRCTSPPFIPPPFSKEFLSDGSCPDTSVEYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80157" stop="80351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYKSMPLSKTLDPDKIHVDNCYTSKGPGCVKDLVGWWKVKNMGQHHVFANLVLFLVEKHDVSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80478" PGL_stop="79796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80478" e_stop="79796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="80478" e_stop="79796" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80478" stop="79796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80470" stop="79861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTAATAAATACCATGATAATTATTTATGTGGAAAATATTTTTATGTAATTTATGAAATTCACAAGGCACCCACCCATGACTAGCTACTACCCTACAACCTTACAAGATCCTAATAATTAAACAAATCACATGGAAACATCATGCTTTTCCACAAGGAAAAGAACAAGATTAGCAAAAACATGATGCTGACCCATATTCTTGACCTTCCACCACCCAACCAAATCCTTCACACAACCAGGCCCTTTGCTTGTGTAACAATTGTCTACATGTATTTTGTCAGGATCCAATGTTTTAGACAAAGGCATTGACTTATAAAAGATTTAGAAAATGAACCTTCCTTTCTTTGTCCACCTATAATAATAGCAATGTACAATAGAGCATTGGCTAGCAAACAACAACAAAAACTAATGTCTTTGTTGTATTCATATAGCCTCATATTCATATTGGTGGGTCAATATTCATTAAGATCCAACAAAAGTCCACCACAAATCACTTCTTTCTTCTTCTTCCATTCTTTTCTGGTCCAAAATTTTTGACTTTTTTTGAGTCTTTATTCACACTAGTTAGTAGTAGGATCTGATACGAGTGCAACAATATTTCTGAAGAGTCTGAGGGATATAGGCTAGTAGTATTCAACTGAGGTATCAGGGCAACTTCCATCAGAGAGAAATTCTTTACTGA</gDNA_template>
            <first_frame> V  *  *  I  P  *  *  L  F  M  W  K  I  F  L  C  N  L  *  N  S  Q  G  T  H  P  *  L  A  T  T  L  Q  P  Y  K  I  L  I  I  K  Q  I  T  W  K  H  H  A  F  P  Q  G  K  E  Q  D  *  Q  K  H  D  A  D  P  Y  S  *  P  S  T  T  Q  P  N  P  S  H  N  Q  A  L  C  L  C  N  N  C  L  H  V  F  C  Q  D  P  M  F  *  T  K  A  L  T  Y  K  R  F  R  K  *  T  F  L  S  L  S  T  Y  N  N  S  N  V  Q  *  S  I  G  *  Q  T  T  T  K  T  N  V  F  V  V  F  I  *  P  H  I  H  I  G  G  S  I  F  I  K  I  Q  Q  K  S  T  T  N  H  F  F  L  L  L  P  F  F  S  G  P  K  F  L  T  F  F  E  S  L  F  T  L  V  S  S  R  I  *  Y  E  C  N  N  I  S  E  E  S  E  G  Y  R  L  V  V  F  N  *  G  I  R  A  T  S  I  R  E  K  F  F  T   </first_frame>
            <second_frame>  S  N  K  Y  H  D  N  Y  L  C  G  K  Y  F  Y  V  I  Y  E  I  H  K  A  P  T  H  D  *  L  L  P  Y  N  L  T  R  S  *  *  L  N  K  S  H  G  N  I  M  L  F  H  K  E  K  N  K  I  S  K  N  M  M  L  T  H  I  L  D  L  P  P  P  N  Q  I  L  H  T  T  R  P  F  A  C  V  T  I  V  Y  M  Y  F  V  R  I  Q  C  F  R  Q  R  H  *  L  I  K  D  L  E  N  E  P  S  F  L  C  P  P  I  I  I  A  M  Y  N  R  A  L  A  S  K  Q  Q  Q  K  L  M  S  L  L  Y  S  Y  S  L  I  F  I  L  V  G  Q  Y  S  L  R  S  N  K  S  P  P  Q  I  T  S  F  F  F  F  H  S  F  L  V  Q  N  F  *  L  F  L  S  L  Y  S  H  *  L  V  V  G  S  D  T  S  A  T  I  F  L  K  S  L  R  D  I  G  *  *  Y  S  T  E  V  S  G  Q  L  P  S  E  R  N  S  L  L  </second_frame>
            <third_frame>   L  I  N  T  M  I  I  I  Y  V  E  N  I  F  M  *  F  M  K  F  T  R  H  P  P  M  T  S  Y  Y  P  T  T  L  Q  D  P  N  N  *  T  N  H  M  E  T  S  C  F  S  T  R  K  R  T  R  L  A  K  T  *  C  *  P  I  F  L  T  F  H  H  P  T  K  S  F  T  Q  P  G  P  L  L  V  *  Q  L  S  T  C  I  L  S  G  S  N  V  L  D  K  G  I  D  L  *  K  I  *  K  M  N  L  P  F  F  V  H  L  *  *  *  Q  C  T  I  E  H  W  L  A  N  N  N  K  N  *  C  L  C  C  I  H  I  A  S  Y  S  Y  W  W  V  N  I  H  *  D  P  T  K  V  H  H  K  S  L  L  S  S  S  S  I  L  F  W  S  K  I  F  D  F  F  *  V  F  I  H  T  S  *  *  *  D  L  I  R  V  Q  Q  Y  F  *  R  V  *  G  I  *  A  S  S  I  Q  L  R  Y  Q  G  N  F  H  Q  R  E  I  L  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80168" stop="79941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKDLENEPSFLCPPIIIAMYNRALASKQQQKLMSLLYSYSLIFILVGQYSLRSNKSPPQITSFFFFHSFLVQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="87131" PGL_stop="95010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87131" e_stop="87443"/>
            <exon e_start="88817" e_stop="88902"/>
            <exon e_start="88969" e_stop="89057"/>
            <exon e_start="89160" e_stop="89399"/>
            <exon e_start="89538" e_stop="89659"/>
            <exon e_start="90158" e_stop="90233"/>
            <exon e_start="90424" e_stop="90531"/>
            <exon e_start="90646" e_stop="90822"/>
            <exon e_start="90961" e_stop="91178"/>
            <exon e_start="91650" e_stop="91782"/>
            <exon e_start="92667" e_stop="92890"/>
            <exon e_start="93945" e_stop="94098"/>
            <exon e_start="94354" e_stop="95010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.920"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.777" e_score="0.975"/>
          <exon-intron don_prob="0.979" acc_prob="0.974" e_score="0.984"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="87131" e_stop="87443" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87444" i_stop="88816" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88817" e_stop="88902" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88903" i_stop="88968" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88969" e_stop="89057" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.926">
            <gDNA_intron_boundary i_start="89058" i_stop="89159" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="89160" e_stop="89399" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.777">
            <gDNA_intron_boundary i_start="89400" i_stop="89537" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="89538" e_stop="89659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.974">
            <gDNA_intron_boundary i_start="89660" i_stop="90157" i_length="498"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90158" e_stop="90233" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="90234" i_stop="90423" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90424" e_stop="90531" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90532" i_stop="90645" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90646" e_stop="90822" e_length="177"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="0.976">
            <gDNA_intron_boundary i_start="90823" i_stop="90960" i_length="138"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90961" e_stop="91178" e_length="218"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="91179" i_stop="91649" i_length="471"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="91650" e_stop="91782" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="91783" i_stop="92666" i_length="884"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="92667" e_stop="92890" e_length="224"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="92891" i_stop="93944" i_length="1054"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93945" e_stop="94098" e_length="154"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94099" i_stop="94353" i_length="255"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="94354" e_stop="95010" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87131" stop="87443"/>
              <exon start="88817" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87216" stop="87443"/>
              <exon start="88817" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87222" stop="87443"/>
              <exon start="88817" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87246" stop="87443"/>
              <exon start="88817" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88862" stop="88902"/>
              <exon start="88969" stop="89057"/>
              <exon start="89160" stop="89399"/>
              <exon start="89538" stop="89659"/>
              <exon start="90158" stop="90233"/>
              <exon start="90424" stop="90485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89580" stop="89659"/>
              <exon start="90158" stop="90233"/>
              <exon start="90424" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89625" stop="89659"/>
              <exon start="90158" stop="90233"/>
              <exon start="90424" stop="90531"/>
              <exon start="90646" stop="90806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90158" stop="90233"/>
              <exon start="90424" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91178"/>
              <exon start="91650" stop="91721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91178"/>
              <exon start="91650" stop="91782"/>
              <exon start="92667" stop="92786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90483" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91178"/>
              <exon start="91650" stop="91746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90498" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="91178"/>
              <exon start="91650" stop="91782"/>
              <exon start="92667" stop="92811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90499" stop="90531"/>
              <exon start="90646" stop="90822"/>
              <exon start="90961" stop="90974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91011" stop="91178"/>
              <exon start="91650" stop="91782"/>
              <exon start="92667" stop="92890"/>
              <exon start="93945" stop="94098"/>
              <exon start="94354" stop="94358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91688" stop="91782"/>
              <exon start="92667" stop="92890"/>
              <exon start="93945" stop="94008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94033" stop="94098"/>
              <exon start="94354" stop="94996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94424" stop="95010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94425" stop="95007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGTTTTGAGTCAAATCGGCGGGGACTCATTTCTGGTTTACATTATAAGCTCAGCACTTTTCAAAATTACAAAAACTTTCCTTCTCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT : GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG : GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA : GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAG : GTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT : GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG : GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG : GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA : ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG : TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG : ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG : TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG : TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</gDNA_template>
            <first_frame> R  V  L  S  Q  I  G  G  D  S  F  L  V  Y  I  I  S  S  A  L  F  K  I  T  K  T  F  L  L  T  *  K  A  N  F  C  S  K  S  E  V  R  L  E  I  R  R  R  R  R  E  R  W  R  K  Q  I  R  M  R  T  E  I  R  R  R  R  W  W  R  K  P  K  R  L  L  D  R  V  Q  L  L  V  L  V  L  N  V  L  F  N  L  S  K  L  I  S  I  H  F  R  L  L  T   : C  M  K  K  V  T  C  T  E  T  W  L  L  M  L  L  F  Q  Q  Q  I  F  S  L  V  G  V  L  M  :  V  T  *  N  F  G  R  K  S  L  L  V  S  S  L  Q  N  I  L  D  L  I  L  D  Q  L  K  A  L  Q :   L  A  L  M  V  C  F  A  V  Q  F  Q  V  I  S  L  *  K  Y  M  T  *  *  I  M  T  *  C  P  *  F  V  F  P  S  Y  L  D  V  L  N  G  Y  I  N  K  G  M  S  R  L  N  L  P  L  V  I  V  T  P  H  W  C  I  Y  M  M  Q  E  L  V  Q  M  I  L  *  Y  L  K  R :   Y  S  C  A  P  S  K  S  *  N  T  I  M  S  L  I  L  *  Y  Q  Q  M  T  K  G  S  L  S  T  G  V  L  P  H  L  S  S  Q  R  I   : W  *  I  L  D  *  R  V  I  L  I  S  L  K  L  *  N  A  K  L  L  F  L  L  *  R :   *  A  L  M  V  N  S  S  R  *  L  H  Q  I  A  G  F  V  Y  F  G  S  R  Q  V  N  *  D  V  C  M  M  N  L  L  R :   W  H  K  I  S  R  G  V  M  F  L  Y  T  D  L  K  L  L  T  L  D  E  E  W  L  W  K  K  K  L  R  K  Q  N  V  Y  H  N  L  M  L  F  L  M  K  V  P  I  S  L  Y  M  Q  L  S  *  E  L  K :   L  *  I  Y  T  L  T  R  Y  L  V  S  W  G  R  W  R  A  M  I  D  F  *  E  L  L  C  I  K  V  I  E  V  V  K  K  *  E  K  S  L  L  R  Q  Q  M  Q  M  K  A  R  S  P  *  *  I  P  I  Y  F  A  V  L  S  R  N  I  E  S  I  C  S   : V  R  E  N  L  R  N  L  M  I  L  P  R  E  E  M  S  S  M  K  S  H  L  L  M  N  F  W  P  Y  L  T  L  G  S  P  L  L  H  P  F  Q  I  M  * :   S  C  I  P  V  W  V  T  F  I  *  S  Y  T  L  K  S  V  Q  K  Q  W  R  T  L  Q  H  T  A  G  M  D  T  M  I  I  *  Y  F  I  G  S  S  E  A  L  W  F  R  Q  E  I  H  *  E  M  A  R  V  A  N  L  F  G  E  G  S  L  K  M  S  S  I  K   : V  C  D  M  I  D  P  S  L  S  R  W  L  M  L  G  Q  T  Q  M  A  L  N  S  S  *  Q  L  L  P  L  H  G  W  T  I  S  T  Q  F  L  A  E  W  *  K  E  W  M  L  Y  S :   L  *  R  K  *  R  P  T  K  V  T  S  H  T  R  M  *  K  Y  *  M  *  L  F  Q  S  L  K  W  V  L  V  V  A  M  L  L  I  G  *  F  T  S  A  L  F  W  R  T  G  R  S  T  T  T  L  R  W  K  V  L  L  S  S  L  D  P  D  L  T  C  I  C  V  I  Y  D  F  W  Y  F  S  Q  N  L  L  Y  N  I  D  S  F  S  F  K  K  L  F  V  P  P  G  S  R  I  P  L  A  S  L  K  L  K  G  Y  *  *  M  G  V  A  G  *  S  G  I  R  I  S  S  L  P  Q  G  V  Y  D  Q  R  F  P  L  K  I  H  *  *  D  R  T  A  *  L  I  I  N  V  H  V  V  D  S  N  L  *  S  *  R  P  R  C  C  F  R  G  F  K  *  T  T  T  S  V  D  L  F  D  I  F  L  S  P  S  F  I  Y  L  N  C  S  C  S  Y  C  T  R  P  Y  Y  E  F  K  L  S  V  S  F  I   </first_frame>
            <second_frame>  G  F  *  V  K  S  A  G  T  H  F  W  F  T  L  *  A  Q  H  F  S  K  L  Q  K  L  S  F  S  L  R  K  Q  I  S  A  A  N  R  K  *  D  W  K  S  G  D  G  D  G  R  D  G  G  S  R  S  E  *  E  R  K  S  G  G  G  G  G  G  G  N  R  N  G  Y  W  T  G  S  S  S  S  C  S  C  *  T  S  S  S  I  *  A  S  L  S  R  F  T  S  V  C  *  L  :  V  *  K  K  L  H  A  P  R  R  G  Y  S  C  C  C  F  S  S  R  F  F  H  *  W  E  Y  *  W :   S  P  E  I  L  E  E  K  A  Y  W  Y  R  V  C  K  T  F  *  I  S  S  W  T  N  *  R  P  C   : S  *  H  *  W  Y  A  L  L  Y  N  F  K  *  *  V  S  E  N  I  *  R  S  E  L  *  H  D  V  H  D  S  S  S  L  H  T  W  M  C  *  M  G  I  *  T  R  G  C  Q  G  *  T  C  R  *  *  S  *  L  L  I  G  A  Y  I  *  C  K  S  W  Y  K  *  S  Y  N  I  *  R   : G  T  V  V  P  H  Q  S  H  E  I  Q  S  C  L  *  Y  C  D  I  S  R  *  Q  R  D  H  *  V  L  E  S  C  H  T  *  V  P  R  E  S  :  G  E  F  *  I  E  E  *  Y  *  S  L  *  N  C  E  M  Q  N  C  C  F  F  Y  R   : G  K  P  *  W  *  T  V  L  G  N  F  T  R  S  Q  D  S  Y  I  L  V  Q  D  R  *  T  K  T  C  V  *  *  I  S  *   : G  G  T  R  S  P  E  E  *  C  S  F  I  P  T  *  S  Y  *  L  W  T  K  N  G  C  G  K  R  N  *  E  N  R  M  C  T  T  T  *  C  C  F  *  *  K  F  Q  F  H  Y  I  C  N  S  P  R  N  *   : N  Y  K  S  T  H  *  Q  G  I  S  Y  P  G  E  G  G  E  Q  *  *  I  F  E  N  C  F  V  S  R  *  *  K  *  *  K  S  K  K  N  P  C  C  G  S  K  C  K  *  K  Q  G  A  L  D  R  S  Q  S  T  L  L  C  F  Q  E  T  *  N  L  F  V  Q  :  S  E  R  T  *  G  T  *  *  S  Y  Q  G  K  R  C  L  Q  *  K  A  T  S  *  *  T  F  G  R  I  *  H  W  E  V  R  Y  Y  I  P  S  R  *  C   : D  H  A  Y  Q  Y  G  *  H  S  Y  E  A  I  P  *  R  V  S  K  N  S  G  E  L  Y  N  T  L  Q  E  W  I  L  *  *  F  D  I  S  S  G  H  Q  R  L  Y  G  S  D  R  R  S  I  R  R  W  H  G  W  P  I  Y  L  G  K  G  V  *  R  *  V  P  *  K  :  S  A  T  *  *  T  L  H  C  L  D  G  *  C  W  A  K  H  K  W  L  S  I  L  H  N  N  C  C  H  S  M  V  G  Q  *  A  H  S  F  W  Q  S  G  E  R  N  G  C  C  T   : V  F  R  E  S  E  D  R  Q  R  *  Q  A  I  P  G  C  K  N  I  E  C  D  C  S  K  V  L  N  G  F  L  L  W  L  C  S  L  L  D  S  L  H  L  L  Y  S  G  E  L  E  G  V  L  R  L  Y  V  G  K  Y  C  Y  P  R  W  T  L  I  *  H  V  S  V  *  S  M  T  S  G  T  F  L  K  T  C  Y  T  T  *  I  P  S  V  L  R  N  F  S  C  L  R  E  V  E  F  H  L  L  H  S  S  *  K  D  I  S  E  W  E  L  L  A  D  L  V  L  G  L  A  H  C  H  K  E  C  T  I  S  V  F  H  S  R  F  I  S  E  T  E  R  P  S  L  L  S  M  F  M  L  W  T  V  I  Y  R  V  R  D  L  D  V  V  F  A  V  S  N  E  L  Q  Q  V  *  T  F  L  T  S  F  *  V  L  A  S  Y  I  *  I  V  A  A  V  T  V  Q  D  P  I  M  N  S  N  Y  Q  *  A  S  F  </second_frame>
            <third_frame>   G  F  E  S  N  R  R  G  L  I  S  G  L  H  Y  K  L  S  T  F  Q  N  Y  K  N  F  P  S  H  L  E  S  K  F  L  Q  Q  I  G  S  E  I  G  N  P  A  T  A  T  G  E  M  E  E  A  D  Q  N  E  N  G  N  P  A  A  A  V  V  E  E  T  E  T  V  I  G  P  G  P  A  P  R  A  R  A  K  R  P  L  Q  F  E  Q  A  Y  L  D  S  L  P  S  A  N  L :   Y  E  K  S  Y  M  H  R  D  V  V  T  H  V  A  V  S  A  A  D  F  F  I  S  G  S  T  D   : G  H  L  K  F  W  K  K  K  P  T  G  I  E  F  A  K  H  F  R  S  H  L  G  P  I  E  G  L  A  :  V  S  I  D  G  M  L  C  C  T  I  S  S  D  K  S  L  K  I  Y  D  V  V  N  Y  D  M  M  S  M  I  R  L  P  F  I  P  G  C  V  E  W  V  Y  K  Q  G  D  V  K  A  K  L  A  V  S  D  R  N  S  S  L  V  H  I  Y  D  A  R  A  G  T  N  D  P  I  I  S  K  E  :  V  Q  L  C  P  I  K  V  M  K  Y  N  H  V  F  D  T  V  I  S  A  D  D  K  G  I  I  E  Y  W  S  P  A  T  L  K  F  P  E  N  L :   V  N  F  R  L  K  S  D  T  D  L  F  E  I  V  K  C  K  T  A  V  S  S  I  E  :  V  S  P  D  G  K  Q  F  S  V  T  S  P  D  R  R  I  R  I  F  W  F  K  T  G  K  L  R  R  V  Y  D  E  S  L  E  :  V  A  Q  D  L  Q  R  S  D  V  P  L  Y  R  L  E  A  I  D  F  G  R  R  M  A  V  E  K  E  I  E  K  T  E  C  V  P  Q  P  N  A  V  F  D  E  S  S  N  F  I  I  Y  A  T  L  L  G  I  K  :  I  I  N  L  H  T  N  K  V  S  R  I  L  G  K  V  E  S  N  D  R  F  L  R  I  A  L  Y  Q  G  D  R  S  S  K  K  V  R  K  I  P  A  A  A  A  N  A  N  E  S  K  E  P  L  I  D  P  N  L  L  C  C  A  F  K  K  H  R  I  Y  L  F  S :   Q  R  E  P  E  E  P  D  D  P  T  K  G  R  D  V  F  N  E  K  P  P  P  D  E  L  L  A  V  S  D  I  G  K  S  V  T  T  S  L  P  D  N  V  :  I  M  H  T  S  M  G  D  I  H  M  K  L  Y  P  E  E  C  P  K  T  V  E  N  F  T  T  H  C  R  N  G  Y  Y  D  N  L  I  F  H  R  V  I  R  G  F  M  V  Q  T  G  D  P  L  G  D  G  T  G  G  Q  S  I  W  G  R  E  F  E  D  E  F  H  K  S :   L  R  H  D  R  P  F  T  V  S  M  A  N  A  G  P  N  T  N  G  S  Q  F  F  I  T  T  V  A  T  P  W  L  D  N  K  H  T  V  F  G  R  V  V  K  G  M  D  V  V  Q  :  S  L  E  K  V  K  T  D  K  G  D  K  P  Y  Q  D  V  K  I  L  N  V  T  V  P  K  S  *  M  G  S  C  C  G  Y  A  P  Y  W  I  V  Y  I  C  F  I  L  E  N  W  K  E  Y  Y  D  F  T  L  E  S  I  A  I  L  V  G  P  *  S  D  M  Y  L  C  N  L  *  L  L  V  L  F  S  K  P  A  I  Q  H  R  F  L  Q  F  *  E  T  F  R  A  S  G  K  *  N  S  T  C  F  T  Q  V  E  R  I  L  V  N  G  S  C  W  L  I  W  Y  *  D  *  L  I  A  T  R  S  V  R  S  A  F  S  T  Q  D  S  L  V  R  Q  N  G  L  A  Y  Y  Q  C  S  C  C  G  Q  *  F  I  E  L  E  T  *  M  L  F  S  R  F  Q  M  N  Y  N  K  C  R  P  F  *  H  L  F  K  S  *  L  H  I  F  E  L  *  L  Q  L  L  Y  K  T  L  L  *  I  Q  I  I  S  K  L  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87133" stop="87443"/>
                    <exon start="88817" stop="88902"/>
                    <exon start="88969" stop="89057"/>
                    <exon start="89160" stop="89399"/>
                    <exon start="89538" stop="89659"/>
                    <exon start="90158" stop="90233"/>
                    <exon start="90424" stop="90531"/>
                    <exon start="90646" stop="90822"/>
                    <exon start="90961" stop="91178"/>
                    <exon start="91650" stop="91782"/>
                    <exon start="92667" stop="92890"/>
                    <exon start="93945" stop="94098"/>
                    <exon start="94354" stop="94437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2019</number_coding_nucleotides>
                  <number_encoded_amino_acids>673</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFESNRRGLISGLHYKLSTFQNYKNFPSHLESKFLQQIGSEIGNPATATGEMEEADQNENGNPAAAVVEETETVIGPGPAPRARAKRPLQFEQAYLDSLPSANLYEKSYMHRDVVTHVAVSAADFFISGSTDGHLKFWKKKPTGIEFAKHFRSHLGPIEGLAVSIDGMLCCTISSDKSLKIYDVVNYDMMSMIRLPFIPGCVEWVYKQGDVKAKLAVSDRNSSLVHIYDARAGTNDPIISKEVQLCPIKVMKYNHVFDTVISADDKGIIEYWSPATLKFPENLVNFRLKSDTDLFEIVKCKTAVSSIEVSPDGKQFSVTSPDRRIRIFWFKTGKLRRVYDESLEVAQDLQRSDVPLYRLEAIDFGRRMAVEKEIEKTECVPQPNAVFDESSNFIIYATLLGIKIINLHTNKVSRILGKVESNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPLIDPNLLCCAFKKHRIYLFSQREPEEPDDPTKGRDVFNEKPPPDELLAVSDIGKSVTTSLPDNVIMHTSMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIRGFMVQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQSLEKVKTDKGDKPYQDVKILNVTVPKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94475" stop="94702"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSALFWRTGRSTTTLRWKVLLSSLDPDLTCICVIYDFWYFSQNLLYNIDSFSFKKLFVPPGSRIPLASLKLKGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94692" stop="94904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDISEWELLADLVLGLAHCHKECTISVFHSRFISETERPSLLSMFMLWTVIYRVRDLDVVFAVSNELQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="95019" PGL_stop="94508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95019" e_stop="94508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="95019" e_stop="94508" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95019" stop="94508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGAAGTGAAATGAAGCTTACTGATAATTTGAATTCATAATAGGGTCTTGTACAGTAACTGCAGCTACAATTCAAATATATGAAGCTAGGACTTAAAAAGATGTCAAAAAGGTCTACACTTGTTGTAGTTCATTTGAAACCGCGAAAACAACATCTAGGTCTCTAACTCTATAAATTACTGTCCACAACATGAACATTGATAATAAGCTAGGCCGTTCTGTCTCACTAATGAATCTTGAGTGGAAAACGCTGATCGTACACTCCTTGTGGCAATGAGCTAATCCTAATACCAGATCAGCCAGCAACTCCCATTCACTAATATCCTTTCAACTTGAGTGAAGCAAGTGGAATTCTACTTCCCGGAGGCACGAAAAGTTTCTTAAAACTGAAGGAATCTATGTTGTATAGCAGGTTTTGAGAAAAGTACCAGAAGTCATAGATTACACAGATACATGTCAGATCAGGGTCCAACGAGGATAGCAATACTTTCCAACGTAAAGTCGTAGTACT</gDNA_template>
            <first_frame> V  R  S  E  M  K  L  T  D  N  L  N  S  *  *  G  L  V  Q  *  L  Q  L  Q  F  K  Y  M  K  L  G  L  K  K  M  S  K  R  S  T  L  V  V  V  H  L  K  P  R  K  Q  H  L  G  L  *  L  Y  K  L  L  S  T  T  *  T  L  I  I  S  *  A  V  L  S  H  *  *  I  L  S  G  K  R  *  S  Y  T  P  C  G  N  E  L  I  L  I  P  D  Q  P  A  T  P  I  H  *  Y  P  F  N  L  S  E  A  S  G  I  L  L  P  G  G  T  K  S  F  L  K  L  K  E  S  M  L  Y  S  R  F  *  E  K  Y  Q  K  S  *  I  T  Q  I  H  V  R  S  G  S  N  E  D  S  N  T  F  Q  R  K  V  V  V   </first_frame>
            <second_frame>  *  E  V  K  *  S  L  L  I  I  *  I  H  N  R  V  L  Y  S  N  C  S  Y  N  S  N  I  *  S  *  D  L  K  R  C  Q  K  G  L  H  L  L  *  F  I  *  N  R  E  N  N  I  *  V  S  N  S  I  N  Y  C  P  Q  H  E  H  *  *  *  A  R  P  F  C  L  T  N  E  S  *  V  E  N  A  D  R  T  L  L  V  A  M  S  *  S  *  Y  Q  I  S  Q  Q  L  P  F  T  N  I  L  S  T  *  V  K  Q  V  E  F  Y  F  P  E  A  R  K  V  S  *  N  *  R  N  L  C  C  I  A  G  F  E  K  S  T  R  S  H  R  L  H  R  Y  M  S  D  Q  G  P  T  R  I  A  I  L  S  N  V  K  S  *  Y  </second_frame>
            <third_frame>   E  K  *  N  E  A  Y  *  *  F  E  F  I  I  G  S  C  T  V  T  A  A  T  I  Q  I  Y  E  A  R  T  *  K  D  V  K  K  V  Y  T  C  C  S  S  F  E  T  A  K  T  T  S  R  S  L  T  L  *  I  T  V  H  N  M  N  I  D  N  K  L  G  R  S  V  S  L  M  N  L  E  W  K  T  L  I  V  H  S  L  W  Q  *  A  N  P  N  T  R  S  A  S  N  S  H  S  L  I  S  F  Q  L  E  *  S  K  W  N  S  T  S  R  R  H  E  K  F  L  K  T  E  G  I  Y  V  V  *  Q  V  L  R  K  V  P  E  V  I  D  Y  T  D  T  C  Q  I  R  V  Q  R  G  *  Q  Y  F  P  T  *  S  R  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0139J14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97118" PGL_stop="95152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97118" e_stop="97070"/>
            <exon e_start="96959" e_stop="96864"/>
            <exon e_start="95751" e_stop="95525"/>
            <exon e_start="95422" e_stop="95152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97118" e_stop="97070" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96959" e_stop="96864" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95751" e_stop="95525" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.904">
            <gDNA_exon_boundary e_start="95422" e_stop="95152" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97118" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372405" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97116" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97114" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97114" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97113" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97110" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97108" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97107" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589110" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97106" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97106" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97104" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97104" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97102" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97100" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599686" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97088" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96955" stop="96864"/>
              <exon start="95751" stop="95586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96935" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96925" stop="96864"/>
              <exon start="95751" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96919" stop="96864"/>
              <exon start="95751" stop="95636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96902" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96894" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95698" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95688" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95680" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586210" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95664" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238765" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA : ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTGCTTCTTTTCTTGTTGATGTATTCGTTGTCAGTTCAACTCGTCAAAACCTGCAATTCTCAATTTATA</gDNA_template>
            <first_frame> S  S  N  S  S  P  T  P  L  K  L  T  N  L  T  Q   : N  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M  G  F  S  L  F  D  *  R  N  V  *  L  V  S  V  *  M  V  L  F  P  S  S  R  *  V  Y  S  G  N  L  F  V  N  L  L  F  S  L  L  V  *  L  M  H  L  Y  F  A  W  *  T  S  *  V  N  W  K  L  L  V  L  L  D  L  F  A  S  F  L  V  D  V  F  V  V  S  S  T  R  Q  N  L  Q  F  S  I  Y  </first_frame>
            <second_frame>  A  A  T  A  A  L  R  H  *  S  L  Q  I  S  H  K  :  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  A  S  V  S  S  I  R  G  M  F  N  W  F  L  Y  E  W  S  C  S  P  V  P  V  E  F  I  L  G  I  F  L  S  T  Y  C  F  R  F  *  F  S  *  C  T  Y  I  L  L  G  K  H  L  E  S  I  G  N  Y  *  Y  C  W  I  Y  L  L  L  F  L  L  M  Y  S  L  S  V  Q  L  V  K  T  C  N  S  Q  F  I </second_frame>
            <third_frame>   Q  Q  Q  Q  P  Y  A  I  K  A  Y  K  S  H  T  K :   *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G  L  Q  S  L  R  L  E  E  C  L  T  G  F  C  M  N  G  L  V  P  Q  F  P  L  S  L  F  W  E  S  F  C  Q  L  T  V  F  A  F  S  L  V  N  A  P  I  F  C  L  V  N  I  L  S  Q  L  E  I  T  S  I  V  G  F  I  C  F  F  S  C  *  C  I  R  C  Q  F  N  S  S  K  P  A  I  L  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97118" stop="97070"/>
                    <exon start="96959" stop="96864"/>
                    <exon start="95751" stop="95525"/>
                    <exon start="95422" stop="95396"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNSSPTPLKLTNLTQNKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95420" stop="95202"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGLQSLRLEECLTGFCMNGLVPQFPLSLFWESFCQLTVFAFSLVNAPIFCLVNILSQLEITSIVGFICFFSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97104" e_stop="97070"/>
            <exon e_start="96977" e_stop="96864"/>
            <exon e_start="95751" e_stop="95525"/>
            <exon e_start="95422" e_stop="95152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.246" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.960"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97104" e_stop="97070" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.246">
            <gDNA_intron_boundary i_start="97069" i_stop="96978" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96977" e_stop="96864" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="95751" e_stop="95525" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95524" i_stop="95423" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.904">
            <gDNA_exon_boundary e_start="95422" e_stop="95152" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97104" stop="97070"/>
              <exon start="96977" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96956" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96955" stop="96864"/>
              <exon start="95751" stop="95586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96935" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96925" stop="96864"/>
              <exon start="95751" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96919" stop="96864"/>
              <exon start="95751" stop="95636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96902" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96894" stop="96864"/>
              <exon start="95751" stop="95525"/>
              <exon start="95422" stop="95152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95698" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95688" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95680" stop="95525"/>
              <exon start="95422" stop="95227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586210" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95664" stop="95525"/>
              <exon start="95422" stop="95223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238765" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA : TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTGCTTCTTTTCTTGTTGATGTATTCGTTGTCAGTTCAACTCGTCAAAACCTGCAATTCTCAATTTATA</gDNA_template>
            <first_frame> P  Y  A  I  K  A  Y  K  S  H  T  N :   F  V  C  I  C  R  *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G  L  Q  S  L  R  L  E  E  C  L  T  G  F  C  M  N  G  L  V  P  Q  F  P  L  S  L  F  W  E  S  F  C  Q  L  T  V  F  A  F  S  L  V  N  A  P  I  F  C  L  V  N  I  L  S  Q  L  E  I  T  S  I  V  G  F  I  C  F  F  S  C  *  C  I  R  C  Q  F  N  S  S  K  P  A  I  L  N  L   </first_frame>
            <second_frame>  P  T  P  L  K  L  T  N  L  T  Q   : I  L  C  V  F  V  D  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M  G  F  S  L  F  D  *  R  N  V  *  L  V  S  V  *  M  V  L  F  P  S  S  R  *  V  Y  S  G  N  L  F  V  N  L  L  F  S  L  L  V  *  L  M  H  L  Y  F  A  W  *  T  S  *  V  N  W  K  L  L  V  L  L  D  L  F  A  S  F  L  V  D  V  F  V  V  S  S  T  R  Q  N  L  Q  F  S  I  Y  </second_frame>
            <third_frame>   L  R  H  *  S  L  Q  I  S  H  K  :  F  C  V  Y  L  *  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  A  S  V  S  S  I  R  G  M  F  N  W  F  L  Y  E  W  S  C  S  P  V  P  V  E  F  I  L  G  I  F  L  S  T  Y  C  F  R  F  *  F  S  *  C  T  Y  I  L  L  G  K  H  L  E  S  I  G  N  Y  *  Y  C  W  I  Y  L  L  L  F  L  L  M  Y  S  L  S  V  Q  L  V  K  T  C  N  S  Q  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97103" stop="97070"/>
                    <exon start="96977" stop="96864"/>
                    <exon start="95751" stop="95525"/>
                    <exon start="95422" stop="95396"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPLKLTNLTQILCVFVDKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95420" stop="95202"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGLQSLRLEECLTGFCMNGLVPQFPLSLFWESFCQLTVFAFSLVNAPIFCLVNILSQLEITSIVGFICFFSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97115" e_stop="97070"/>
            <exon e_start="96959" e_stop="96864"/>
            <exon e_start="95751" e_stop="95520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97115" e_stop="97070" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97069" i_stop="96960" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96959" e_stop="96864" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96863" i_stop="95752" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="95751" e_stop="95520" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97115" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97109" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97104" stop="97070"/>
              <exon start="96959" stop="96864"/>
              <exon start="95751" stop="95583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96955" stop="96864"/>
              <exon start="95751" stop="95586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96925" stop="96864"/>
              <exon start="95751" stop="95594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96919" stop="96864"/>
              <exon start="95751" stop="95636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA : ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAG</gDNA_template>
            <first_frame> S  N  S  S  P  T  P  L  K  L  T  N  L  T  Q   : N  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  V   </first_frame>
            <second_frame>  A  T  A  A  L  R  H  *  S  L  Q  I  S  H  K  :  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M  *  </second_frame>
            <third_frame>   Q  Q  Q  P  Y  A  I  K  A  Y  K  S  H  T  K :   *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97115" stop="97070"/>
                    <exon start="96959" stop="96864"/>
                    <exon start="95751" stop="95522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSSPTPLKLTNLTQNKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="108326" PGL_stop="108830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108326" e_stop="108830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="108326" e_stop="108830" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108326" stop="108830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGCCACACAAAGTGGCATGCTTCACATGGCTACTAGCCAATGAAGCAGTTTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATATCTTCTTGCATTGCAACTTTACTGGGCAGCTGTGGCAGATTTTCCTTTATCTCAGAGCATATCTTGGTGTATGCCTAGCAAGATTGATGAGACTCTATTCAGTTGGAAGATGGCTGGAGTTGCGGCTACAAACAGAGAAAGGTGGAGAATGATCCCTGCTAGAATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATATTTTGAGAATTGGAACAACACCCTGCAGGAAGTTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATCGATATTTTAGGATCCATTTAGATTTGGTTCAGTTTTTTGGATAGATTATACTTTCT</gDNA_template>
            <first_frame> K  V  P  H  K  V  A  C  F  T  W  L  L  A  N  E  A  V  L  T  L  D  N  V  A  K  R  G  I  S  L  C  N  R  C  S  L  C  G  K  A  N  E  T  V  R  H  I  F  L  H  C  N  F  T  G  Q  L  W  Q  I  F  L  Y  L  R  A  Y  L  G  V  C  L  A  R  L  M  R  L  Y  S  V  G  R  W  L  E  L  R  L  Q  T  E  K  G  G  E  *  S  L  L  E  F  G  G  L  Y  G  G  R  E  T  R  D  I  L  R  I  G  T  T  P  C  R  K  L  S  L  S  V  F  C  C  S  A  F  G  V  Q  M  S  T  P  M  R  L  S  Q  S  S  I  F  *  D  P  F  R  F  G  S  V  F  W  I  D  Y  T  F  </first_frame>
            <second_frame>  K  C  H  T  K  W  H  A  S  H  G  Y  *  P  M  K  Q  F  *  H  W  I  M  W  P  R  E  E  S  L  Y  A  I  D  V  P  C  V  G  R  L  M  R  Q  *  D  I  S  S  C  I  A  T  L  L  G  S  C  G  R  F  S  F  I  S  E  H  I  L  V  Y  A  *  Q  D  *  *  D  S  I  Q  L  E  D  G  W  S  C  G  Y  K  Q  R  K  V  E  N  D  P  C  *  N  L  V  D  Y  M  E  G  E  K  R  E  I  F  *  E  L  E  Q  H  P  A  G  S  *  A  *  V  Y  F  V  V  L  L  L  V  Y  K  C  L  L  Q  *  D  *  V  N  H  R  Y  F  R  I  H  L  D  L  V  Q  F  F  G  *  I  I  L  S </second_frame>
            <third_frame>   S  A  T  Q  S  G  M  L  H  M  A  T  S  Q  *  S  S  F  D  I  G  *  C  G  Q  E  R  N  L  S  M  Q  *  M  F  L  V  W  E  G  *  *  D  S  E  T  Y  L  L  A  L  Q  L  Y  W  A  A  V  A  D  F  P  L  S  Q  S  I  S  W  C  M  P  S  K  I  D  E  T  L  F  S  W  K  M  A  G  V  A  A  T  N  R  E  R  W  R  M  I  P  A  R  I  W  W  T  I  W  R  E  R  N  E  R  Y  F  E  N  W  N  N  T  L  Q  E  V  K  L  K  C  I  L  L  F  C  F  W  C  T  N  V  Y  S  N  E  T  E  S  I  I  D  I  L  G  S  I  *  I  W  F  S  F  L  D  R  L  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108454" stop="108795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSETYLLALQLYWAAVADFPLSQSISWCMPSKIDETLFSWKMAGVAATNRERWRMIPARIWWTIWRERNERYFENWNNTLQEVKLKCILLFCFWCTNVYSNETESIIDILGSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108326" stop="108619"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVPHKVACFTWLLANEAVLTLDNVAKRGISLCNRCSLCGKANETVRHIFLHCNFTGQLWQIFLYLRAYLGVCLARLMRLYSVGRWLELRLQTEKGGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 160 chains have been computed
$ 
$ memory statistics:
$ 332256 bytes spliced alignments in total
$ 110 spliced alignments have been stored
$ 3020 bytes was the average size of a spliced alignment
$ 22472 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1728 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 197 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:51:38
-->
