<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 06:44:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E722959" ref_strand="+" ref_description="SGN-E722959 [FC18DE08]">
      <seq>aatcggccgaataaattattccgtaattttatccgaacccttgcacctttcctgattctcgtttttaatcacaagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgaaatactcttcaattttattgttctacgtgttaagcttgatgttaatctggattagaaatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="16472" stop="15298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16180" g_stop="15598" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="638"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E722959" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16180" e_stop="15598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAT-TTTAAAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATA</genome_strand>
        <mrna_strand>AATCGGCCGAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E543145" ref_strand="-" ref_description="SGN-E543145 [TUS-64-M24]">
      <seq>caagatcgtaaccctattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaattttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtttgcgttatggaaattttggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="16410" stop="15361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="15664" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="491"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E543145" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543145" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</genome_strand>
        <mrna_strand>CAAGATCGTAACCCTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATTTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTTTGCGTTATGGAAATTTTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E543146" ref_strand="+" ref_description="SGN-E543146 [TUS-64-M24]">
      <seq>caagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="16410" stop="15361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="15664" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="494"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E543146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</genome_strand>
        <mrna_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E301929" ref_strand="+" ref_description="SGN-E301929 [cLEX-3-A18]">
      <seq>aagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="16409" stop="15374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16109" g_stop="15674" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E301929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16109" e_stop="15674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTAT</genome_strand>
        <mrna_strand>AAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E720619" ref_strand="+" ref_description="SGN-E720619 [FC11BD01]">
      <seq>gggcgaattggcggccaatcggccgaattgacacacaaaaaaataccaaaaccccacttaatgtatacacaaactagttgtaaaagaagaactccaactatatccatgacaaactctacatcattcacattacaatgtgttcaaaccttattgatcatattcaattttattgctacaatatatcgagcatattctaacagtcaatattcgttcttagctttcatctttttcatatattttagtgcttacttggcaaataacttatcatctacatatcgaaacattcaatcgaaaaataagtcttttgaaaaaagcttgttgggatttgctatatggttcttgtattcttccattatttttgggtttgtttatcaattttatccattttttggattttgggctggtcttcctattcatattgtagccataattattagtggggttgtgttctatgactatgtcatttgtgataaacaagatggagataatagtcataattttaggtattttggtagtagcaatgatcaaatgaagaggggttattattgtgaagaaaaatgggaggtcatttgggaaaaagtttgagttactaaggaaatttcagtacatttcacggattcgagataggactgaatcactaagatttattgtacgtaattttatctacaaatatttgtgttattaggaagtaacaaggcgtgtttgtttgtacactagtaccaatctcaatgttatgtgttaaatttccccaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="22417" stop="23739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22717" g_stop="23440" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="754" r_length="724" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="796"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E720619" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22717" e_stop="23440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAAAAAATAATAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAGAAGAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAA</genome_strand>
        <mrna_strand>ACACACAAAAAAATACCAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAAAAAAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E577948" ref_strand="+" ref_description="SGN-E577948 [LE08BH04]">
      <seq>tttttttttttttttttttggggaaatttaacacataacattgagattggtactagtgtacaaacaaacacgccttgttacttcctaataacacaaatatttgtagataaaattacgtacaataaatcttagtgattcagtcctatctcgaatccgtgaaatgtactgaaatttccttagtaactcaaactttttcccaaatgacctcccatttttcttcacaataataacccctcttcatttgatcattgctactaccaaaatacctaaaattatgactattatctccatcttgtttatcacaaatgacatagtcatagaacacaaccccactaataattatggctacaatatgaataggaagaccagcccaaaatccaaaaaatggataaaattgataaacaaacccaaaaataatggaagaatacaagaaccatatagcaaatcccaacaagctcttctcaaaagacttatttttcgattgaatgtttcgatatgtagatgataagttatttgccaagtaagcactaaaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="96183" stop="22617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23455" g_stop="22917" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E577948" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23455" e_stop="22917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAAACTGATTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E704038" ref_strand="+" ref_description="SGN-E704038 [FA23AG05]">
      <seq>gcacagttggtgcagcagacatttcaggcgccgaaatgttatccggctttgccacccaggagtgatgtgggtgcttatatggaagctgagctgggaatgaagattgcttgtggatttgagatgatttatcagttgaaaaagaggcagggcatggacggaaaagggagtacatgggatgcgtttaggctgagtctagagcggagtgggtacttcgaagggctgttaccaggatcgaaggagtataaaagattgatgaagaatgctgaggagtattacaagaatagttcactgcatgcaagagaaagtgctacactaagtgctccagtgcgaagaatagatgagatccttgcccttcctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatattgccgagccacatgatgataatgatgagggaggtgctgctttcatgcattcgtattcggacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="26576" stop="29678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26876" g_stop="27180" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27181" i_stop="28050" i_length="870">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28051" g_stop="28371" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="626" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28372" i_stop="28806" i_length="435">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28807" g_stop="28930" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="750" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28931" i_stop="29287" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29288" g_stop="29378" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="841" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E704038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26876" e_stop="27180"/>
          <exon e_start="28051" e_stop="28371"/>
          <exon e_start="28807" e_stop="28930"/>
          <exon e_start="29288" e_stop="29378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAGGTATCTATTGTATTAGTTTGTATAAAAGTCACGTTTCTTTGTAAAATTTTAGATGATCCACACTGATGACAGATTAGAATTTGGTACAACGGGATTAGATATCTGGAAATTTGGTGTATATATGTCTAATTACTTCCCTGCCTTGGGGGAAGGGTGTATGCACTGGCTTGTTTCAATGATACTATTGTTAAGTAACAAAAACAAAAAAAGTTGGTGACATCGTTAGAGCATCACTAATGATATCTGTAGATTGATTAAACTTTTTCTTAGTGTTCCTATCATCAGGATAATTTCTGCATATCGGGTAAAATATGAGCATTGCATTATCAGGATCTATATGGTGCCATTTGCAGCTTCACGAGTCCTAGGCTAAAAAGTTTCTTGGGTGTGTCTGTTTAGTTATATTTCTCGATGATTCGAAATCTTATGACTGTCCATCCCTGAATTATCAATAATGAGGTCAAGTTGTTGTTTACTTCCCCATGTGTCCTAGATGTCAAAAGGAAATTTGAAGCTTCTATATAGCAGAATTTGTGTATACGTACTGTATTCTATGAACCTTGTGCCTTATTTATTGAAAAAGAAAAAAACTGGAACTGGATTTTGTAGAGATCTGAATCTCCTAGAGAAGTTGTTAGTCTTTGAATATTTGTTTCTTGCCTTACTGAAAGGAAAGCTTGAAATTCTATGAAGTGACATGGTCATATTGTTTACTGTAATGATACTTTATATTCTCTGCTTGATTCACTGTTCTCTCCTCTTACTGCTCAATATACTGATAGTACTGTTTTTATGATTCTTGTCTGAGACGTTCTTGTGTGTCATAAGTATACCTTAACCTGCTACTAACCAATATTGAAAAAAAAACAGTGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</genome_strand>
        <mrna_strand>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E703633" ref_strand="+" ref_description="SGN-E703633 [FA22AB10]">
      <seq>atccggctttgccacccaggagtgatgtgggtgcttatatggaagctgagctgggaatgaagattgcttgtggatttgagatgatttatcagttgaaaaagaggcagggcatggacggaaaagggagtacatgggatgcgtttaggctgagtctagagcggagtgggtacttcgaagggctgttaccaggatcgaaggagtataaaagattgatgaagaatgctgaggagtattacaagaatagttcactgcatgcaagagaaagtgctacactaagtgctccagtgcgaagaatagatgagatccttgcccttcctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaatgtaaaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="26616" stop="29613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26916" g_stop="27180" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27181" i_stop="28050" i_length="870">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28051" g_stop="28371" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="586" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28372" i_stop="28796" i_length="425">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28797" g_stop="28930" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="720" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28931" i_stop="29287" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29288" g_stop="29313" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="746" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E703633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26916" e_stop="27180"/>
          <exon e_start="28051" e_stop="28371"/>
          <exon e_start="28797" e_stop="28930"/>
          <exon e_start="29288" e_stop="29313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAGGTATCTATTGTATTAGTTTGTATAAAAGTCACGTTTCTTTGTAAAATTTTAGATGATCCACACTGATGACAGATTAGAATTTGGTACAACGGGATTAGATATCTGGAAATTTGGTGTATATATGTCTAATTACTTCCCTGCCTTGGGGGAAGGGTGTATGCACTGGCTTGTTTCAATGATACTATTGTTAAGTAACAAAAACAAAAAAAGTTGGTGACATCGTTAGAGCATCACTAATGATATCTGTAGATTGATTAAACTTTTTCTTAGTGTTCCTATCATCAGGATAATTTCTGCATATCGGGTAAAATATGAGCATTGCATTATCAGGATCTATATGGTGCCATTTGCAGCTTCACGAGTCCTAGGCTAAAAAGTTTCTTGGGTGTGTCTGTTTAGTTATATTTCTCGATGATTCGAAATCTTATGACTGTCCATCCCTGAATTATCAATAATGAGGTCAAGTTGTTGTTTACTTCCCCATGTGTCCTAGATGTCAAAAGGAAATTTGAAGCTTCTATATAGCAGAATTTGTGTATACGTACTGTATTCTATGAACCTTGTGCCTTATTTATTGAAAAAGAAAAAAACTGGAACTGGATTTTGTAGAGATCTGAATCTCCTAGAGAAGTTGTTAGTCTTTGAATATTTGTTTCTTGCCTTACTGAAAGGAAAGCTTGAAATTCTATGAAGTGACATGGTCATATTGTTTACTGTAATGATACTTTATATTCTCTGCTTGATTCACTGTTCTCTCCTCTTACTGCTCAATATACTGATAGTACTGTTTTTATGATTCTTGTCTGAGACGTTCTTGTGTGTCATAAGTATACCTTAACCTGCTACTAACCAATATTGAAAAAAAAACAGTGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATT</genome_strand>
        <mrna_strand>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E702176" ref_strand="+" ref_description="SGN-E702176 [FA18AA08]">
      <seq>cctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaatgtaaaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatattgccgagccacatgatgataatgatgagggaggtgctgctttcatgcattcgtattcggacactctgaatgatgaactgaaaggcaccacactaagtaatacctttgtccgcgcaaatggagagtctgagtccataaagaaagatgagggaacatctactgctgcagaaaacatggaagaggaggatttcagtcctgtagatgttgatttcaatcttgtaaagaatttcctggattcgttttcttctcaagatggacttccaggacctgcttctaacttgcttggacttatgggtctacagctaccaccagatgctagcaaagggaaataaccatattatacacaaacttgtttcctcattcttcttttccttgcctttttctaaacggcaatctttacaatactatgtattacgtatgttttaacttcaaacggagaaaaaaggaggaggtggatttatgtggtatttttcatttttgaccatcnaataatttatatattgataaattatgtaaaaaatatttataggtgacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="27800" stop="30339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28100" g_stop="28371" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28372" i_stop="28796" i_length="425">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28797" g_stop="28930" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="406" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28931" i_stop="29287" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29288" g_stop="29460" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="579" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29461" i_stop="29650" i_length="190">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29651" g_stop="30038" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="967" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="968" polyA_stop="984"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E702176" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28100" e_stop="28371"/>
          <exon e_start="28797" e_stop="28930"/>
          <exon e_start="29288" e_stop="29460"/>
          <exon e_start="29651" e_stop="30038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAGGTTAGTCTACACTTATTCCTGCTATACTAAATTTACAGTTGATTCATTTGTCCCAAACGAATAGAGAATGTGGCTTGTTGCTTGATATGCCCCGCTATGTCACGAAACATGGAAACTGTTATGGTTCGTTGCATTTGTATTTACGTCCTATGTTGCTACGTCCACTCATTGAAGCAAATATATGTATCAGGGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAA</genome_strand>
        <mrna_strand>CCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAG..............................................................................................................................................................................................GGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCNAATAATTTATATATTGATAAATTATGTAAAAAATATTTATAGGTGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E727212" ref_strand="+" ref_description="SGN-E727212 [LA14AC04]">
      <seq>tgggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaggacactgctacagctattgcagacactgcttagtatatattaagttataatagtaaaataaatatgccccatatgcatcttctcttgttcagttgggtgtgcagcttaacttctcttgttcaaaaactactaatacttctaccatattggaataaactatcccgtttttggatgcccaataaatttgtcaataaacaacttttgattggtccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30370" stop="33177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30670" g_stop="30824" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32115" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="473" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32204" g_stop="32389" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="659" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32390" i_stop="32525" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32526" g_stop="32870" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="1007" r_length="348" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E727212" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1004</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30670" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32115"/>
          <exon e_start="32204" e_stop="32389"/>
          <exon e_start="32526" e_stop="32870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATG-CCCATATGCATCTTCTCTTGTTCAGTTGGCTGTGCAGC-TAACTTCTCTTGTTCCAAAACTACTAATACTTCTACCATATTGTAATAAACTATCACG-TTTTGGATGCCAAATAAATTTGTCTATAGACAACTTTG</genome_strand>
        <mrna_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAATAGTAAAATAAATATGCCCCATATGCATCTTCTCTTGTTCAGTTGGGTGTGCAGCTTAACTTCTCTTGTTCAAAAACTACTAATACTTCTACCATATTGGAATAAACTATCCCGTTTTTGGATGCCCAATAAATTTGTCAATAAACAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E726132" ref_strand="+" ref_description="SGN-E726132 [LA10BF09]">
      <seq>tgggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagagagatggatctaatgtctttcgtaattgggtgaaagctaatgagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30370" stop="32410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30670" g_stop="30824" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32110" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E726132" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30670" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTA</genome_strand>
        <mrna_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAGAGATGGATCTAATGTCTTTCGTAATTGGGTGAAAGCTAATGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E297631" ref_strand="+" ref_description="SGN-E297631 [cLET-28-C6]">
      <seq>ggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30372" stop="32605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30672" g_stop="30824" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="337" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32115" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="471" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32204" g_stop="32305" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="573" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E297631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30672" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32115"/>
          <exon e_start="32204" e_stop="32305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTG</genome_strand>
        <mrna_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E296709" ref_strand="+" ref_description="SGN-E296709 [cLET-39-L22]">
      <seq>ggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30372" stop="32390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30672" g_stop="30824" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="337" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32090" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="446" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E296709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30672" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTG</genome_strand>
        <mrna_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E259568" ref_strand="+" ref_description="SGN-E259568 [cLEG-42-F6]">
      <seq>aacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccggtgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcattaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcaacaatggttgatgagtcagctaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgagattcgcatcatactgatgtgcctgagccacctaatcctcctcattggatcgctggaacaaatgaatcttaattggttcctgcactgcagaggttggagaatgaacctaatgtgacagcgcgatgccaggattgtattgatggttttcttggctcacttgaaaaagacggatctaatgtctttgcaaattgtgtgacagctaatgagatgacaattatattggttgtatggatatgcacggacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30374" stop="32535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30674" g_stop="30824" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="335" r_length="184" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32115" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="469" r_length="134" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88">
            <donor d_prob="0.928" d_score="0.88"/>
            <acceptor a_prob="0.852" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32204" g_stop="32235" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="501" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E259568" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30674" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32115"/>
          <exon e_start="32204" e_stop="32235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATG</genome_strand>
        <mrna_strand>AACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGGTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCATTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAACAATGGTTGATGAGTCAGCTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGAGATTCGCATCATACTGATGTGCCTGAGCCACCTAATCCTCCTCATTGGATCGCTGGAACAAATGAATCTTAATTGGTTCCTG................................................................................CACTGCAGAGGTTGGAGAATGAACCTAATGTGACAGCGCGATGCCAGGATTGTATTGATGGTTTTCTTGGCTCACTTGAAAAAGACGGATCTAATGTCTTTGCAAATTGTGTGACAGCTAATGAGATGACAATT........................................................................................ATATTGGTTGTATGGATATGCACGGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E697326" ref_strand="+" ref_description="SGN-E697326 [FA02AH04]">
      <seq>cgttaaggcaagaggctgcgattgacttactgaagagtgagcctccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaagacactgctacagctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30382" stop="32990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30676" g_stop="30824" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="333" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32115" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="467" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32204" g_stop="32389" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="653" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32390" i_stop="32525" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32526" g_stop="32690" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="818" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E697326" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30676" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32115"/>
          <exon e_start="32204" e_stop="32389"/>
          <exon e_start="32526" e_stop="32690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGC</genome_strand>
        <mrna_strand>CGTTAAGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGCCTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAAGACACTGCTACAGCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E708877" ref_strand="+" ref_description="SGN-E708877 [FA42AB01]">
      <seq>cctgtggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaggacactgctacagctattgcagacactgcttagtatatattaagttatagtagtaagataaatatgcccatatgcatcttctcttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30379" stop="33059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30677" g_stop="30824" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31901" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="332" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31982" g_stop="32115" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="466" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32204" g_stop="32389" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="652" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32390" i_stop="32525" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32526" g_stop="32759" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="886" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E708877" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30677" e_stop="30824"/>
          <exon e_start="31718" e_stop="31901"/>
          <exon e_start="31982" e_stop="32115"/>
          <exon e_start="32204" e_stop="32389"/>
          <exon e_start="32526" e_stop="32759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTC</genome_strand>
        <mrna_strand>CCTGTGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E238752" ref_strand="-" ref_description="SGN-E238752 [cLEL-9-J16]">
      <seq>cacaaatcaatgtcacctttaaactttaaaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatgttaaatattatgttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="43708" stop="38092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43408" g_stop="43172" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43171" i_stop="42654" i_length="518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42653" g_stop="42633" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="258" r_length="21" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E238752" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238752" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43408" e_stop="43172"/>
          <exon e_start="42653" e_stop="42633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCTATTCTGTTATGGTTCCCTCTGTCTTATTGTTCATTATTGTTTATTATGTATATATACTAGATGTTGATACCCCTTCATTTCTTCGTGGGTTCTGGCTCCTATGCTGACCAAGAACCCTCTATGTTTGTGGACCACCGCACATCGTTTGCTTCGTTAGTACACTATTGTAGAAGCTAGTGAAAATAGTCGTCATTTTTTCCTTTACTAGGAAGGTTATTCTTCTGTAAGCAAGATCTTTGATTAGTTTTTCTTTCTACAAGACTTATCTTAACTTGTCGAACTTTCTTTCCTTCACTAGGAAAGTTACTCCGTAAGCAAGATGTTTGATTACAATGAGTTACGAAAGACAAGTGGATTTGTTGATTGCTCAACTCAAAGCCAAGAAAACCCTAAAAAAGATGAATTTGGACCATTTGTGTTGTTGTATTGATTCAAAACCCCTTTTAAACACACATTGATTCCAACACTTGATGTTTTTGCAAGAATGGCATGTGACCATTGCTACTATAGGTTGAAAAGTGAAAAAAAAAA</genome_strand>
        <mrna_strand>CACAAATCAATGTCACCTTTAAACTTTAAAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E746960" ref_strand="+" ref_description="SGN-E746960 [GI|47104322]">
      <seq>acttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaatttttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgtttgtcatggtggtggtggggtgggaaagagaaggaaccagtgtctaatggatcttcaatgaatcccttgcaagattttggatttggattgaaggaacaaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaggaaatggaagagtagagaggagaggaagagggttgatgagaaatatgatgtggtattggtgccatctgatggtgtttgtttatcaggttccgaatccgatgactctgactggtcgatcgggtggctggaaccacatgcccctgatttccagaatgatgatgagggagatgacagttttgctgtgttggttccttgctacaggcatgattgtagagagataggagagccaaacaatcagtttttaagtgccattgagaatctctcaaatgggtatcctgctgagggtaagaagtatatggagcaatggctctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatgttaaatattatgttcttatgaatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46549" stop="42863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46249" g_stop="45091" g_length="1159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1162" r_length="1162" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45090" i_stop="43649" i_length="1442">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43648" g_stop="43164" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1647" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1648" polyA_stop="1662"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E746960" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1644</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46249" e_stop="45091"/>
          <exon e_start="43648" e_stop="43164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAA-TTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACATTCTGTGTGTTTGTGCCATTGTTATCCTTTGAAATACCAATCGTG-TGGTTGCGAGCGTCACATTATGTTTTGTTGCTTTTGCTGCATTGATTATGTAGAATCTCTTTCGTTTGGATTATTGTTCTTTGATTACTATGATTTGAATTTGATTATGCTTGTTTGCAATTGCTCTGACAATAATGATTCCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTGTAGACTGAGAAAAAGATTCATGTGCGTTTGTCGTATTGTTATCCTTCGTTTTACCAAGCGTGTGGTAGCAAGCGTCACATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATTGTTTTTTGGATAATTGTTCTTTGATAACTATGATTTGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTATAGACTGTGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGAGTGGCAACAAGCGTCGCATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATCATTCTTTTGGATTATTGTTCTTTGATAACTATGATTTGAATTTCTTTATGCTTGTTTGCAACTGCTCTGACAATTATGACACCTCTGGAGCTGAATTTAACAATTAGTTATGTTTAGTAATGTGTAGACTGAGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAAAAATAGAAGCCAGTCTCCCATCAGGACACAGATGGATAGAGTAATATCATTGGATTTAGATTTTAATAAGCAATAGTTGCATTGAAGGATAGATACTATTAATGGAGTAGAATTAATGAGCAATATTTACTGTTATCGTACTACAATCAGTGAACATTATTTACATATCCGTTGTTGTGTATTTTGAGCCGAGGGTGTTTCAGAAACAGCCTCTCTTCACAAGGTAGGGGTAACCTTGCGGACACTCTAGCCTCCTCAGACCCCACTTGTGGGATTTCTATGAGTATGGTGTTGTATTATTGTGCAATTTGACAATAAGAACCTCAATAAAATTTCATTCTAACCTAATGCAGTGAGTTCTACATACTCCATCTTGGTGATGTTATATCCTTTCAATCCAGCCTTTTGGTTCTTAAAGAAAGCTTAAACATTGATAGAGCAATGAACAAAGAACTGACTTTTCCTTTTATTTTGAATGCTATTGTTTCTTCCTGTATGAAGTTTCCAAACTTACGACTTGTATTTGCCTTGAACCAATTTAAAGCCTGCAGAATTTGTTATGAGTTCGTCTAGATAGGTTGGTTAATATGTATCATATCTATGCCAGTCTGTGTTGTCTCGTATTAGACGTACGAGTGAATGTGATCTTGTCTGAAATTCTTCTTTCATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</genome_strand>
        <mrna_strand>ACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E704370" ref_strand="+" ref_description="SGN-E704370 [FA24AD09]">
      <seq>cgataaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaggaaatggaagagtagagaggagaggaagagggttgatgagaaatatgatgtggtattggtgccatctgatggtgtttgtttatcaggttccgaatccgatgactctgactggtcgatcgggtggctggaaccacatgcccctgatttccagaatgatgatgagggagatgacagttttgctgtgttggttccttgctacaggcatgattgtagagagataggagagccaaacaatcagtttttaagtgccattgagaatctctcaaatgggtatcctgctgagggtaagaagtatatggagcaatggctctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttanactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatggttaatattatgttcttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="45742" stop="42867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45444" g_stop="45091" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45090" i_stop="43649" i_length="1442">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43648" g_stop="43168" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="836" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E704370" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45444" e_stop="45091"/>
          <exon e_start="43648" e_stop="43168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACATTCTGTGTGTTTGTGCCATTGTTATCCTTTGAAATACCAATCGTG-TGGTTGCGAGCGTCACATTATGTTTTGTTGCTTTTGCTGCATTGATTATGTAGAATCTCTTTCGTTTGGATTATTGTTCTTTGATTACTATGATTTGAATTTGATTATGCTTGTTTGCAATTGCTCTGACAATAATGATTCCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTGTAGACTGAGAAAAAGATTCATGTGCGTTTGTCGTATTGTTATCCTTCGTTTTACCAAGCGTGTGGTAGCAAGCGTCACATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATTGTTTTTTGGATAATTGTTCTTTGATAACTATGATTTGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTATAGACTGTGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGAGTGGCAACAAGCGTCGCATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATCATTCTTTTGGATTATTGTTCTTTGATAACTATGATTTGAATTTCTTTATGCTTGTTTGCAACTGCTCTGACAATTATGACACCTCTGGAGCTGAATTTAACAATTAGTTATGTTTAGTAATGTGTAGACTGAGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAAAAATAGAAGCCAGTCTCCCATCAGGACACAGATGGATAGAGTAATATCATTGGATTTAGATTTTAATAAGCAATAGTTGCATTGAAGGATAGATACTATTAATGGAGTAGAATTAATGAGCAATATTTACTGTTATCGTACTACAATCAGTGAACATTATTTACATATCCGTTGTTGTGTATTTTGAGCCGAGGGTGTTTCAGAAACAGCCTCTCTTCACAAGGTAGGGGTAACCTTGCGGACACTCTAGCCTCCTCAGACCCCACTTGTGGGATTTCTATGAGTATGGTGTTGTATTATTGTGCAATTTGACAATAAGAACCTCAATAAAATTTCATTCTAACCTAATGCAGTGAGTTCTACATACTCCATCTTGGTGATGTTATATCCTTTCAATCCAGCCTTTTGGTTCTTAAAGAAAGCTTAAACATTGATAGAGCAATGAACAAAGAACTGACTTTTCCTTTTATTTTGAATGCTATTGTTTCTTCCTGTATGAAGTTTCCAAACTTACGACTTGTATTTGCCTTGAACCAATTTAAAGCCTGCAGAATTTGTTATGAGTTCGTCTAGATAGGTTGGTTAATATGTATCATATCTATGCCAGTCTGTGTTGTCTCGTATTAGACGTACGAGTGAATGTGATCTTGTCTGAAATTCTTCTTTCATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGA</genome_strand>
        <mrna_strand>CGATAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTANACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGGTTAATATTATGTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E221211" ref_strand="-" ref_description="SGN-E221211 [cLEL-22-N7]">
      <seq>ggcacgagctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="43920" stop="42909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43629" g_stop="43212" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E221211" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43629" e_stop="43212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</genome_strand>
        <mrna_strand>GGCACG-AGCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E221317" ref_strand="-" ref_description="SGN-E221317 [cLEL-22-N7]">
      <seq>tttcaattgcaagagacaaataatcaagtttttcgtggcagtgatctttggattcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="43774" stop="42909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43474" g_stop="43212" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="282"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E221317" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221317" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43474" e_stop="43212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</genome_strand>
        <mrna_strand>TTTCAATTGCAAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGATTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E339406" ref_strand="+" ref_description="SGN-E339406 [cTOF-4-E18]">
      <seq>acacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgttgtcatggntgggtggtgggggtgggaaaagagaaggaaccagtgtctaatggatcttcaatgaatcccttgcaagattttggatttggattgaaggaacaaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46355" stop="45065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46055" g_stop="45365" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E339406" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46055" e_stop="45365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGG-T-GGTGGT-GGGGTGGG-AAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATG</genome_strand>
        <mrna_strand>ACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCG-TTGTCATGGNTGGGTGGTGGGGGTGGGAAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E334701" ref_strand="+" ref_description="SGN-E334701 [cTOD-23-H14]">
      <seq>ttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgtttgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46488" stop="45230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46188" g_stop="45530" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E334701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46188" e_stop="45530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATG</genome_strand>
        <mrna_strand>TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E347146" ref_strand="+" ref_description="SGN-E347146 [cTOF-25-K19]">
      <seq>tgtgtgttacttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgnattttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46557" stop="45250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46257" g_stop="45550" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E347146" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46257" e_stop="45550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGG-GTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTT</genome_strand>
        <mrna_strand>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGNATTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E337212" ref_strand="+" ref_description="SGN-E337212 [cTOE-7-K5]">
      <seq>agagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttaaccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46504" stop="45344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46204" g_stop="45644" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E337212" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46204" e_stop="45644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAAAAGGG-TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGA</genome_strand>
        <mrna_strand>AGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAACCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E306174" ref_strand="+" ref_description="SGN-E306174 [cLEY-13-K17]">
      <seq>agagagacaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46502" stop="45394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46204" g_stop="45694" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E306174" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46204" e_stop="45694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTT</genome_strand>
        <mrna_strand>AGAGAGA-CAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E272984" ref_strand="+" ref_description="SGN-E272984 [cLEM-25-E18]">
      <seq>agaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttantgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46498" stop="45453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46200" g_stop="45753" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E272984" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46200" e_stop="45753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTG</genome_strand>
        <mrna_strand>AGA-AAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTANTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E299916" ref_strand="+" ref_description="SGN-E299916 [cLEW-1-P10]">
      <seq>cttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaatttttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="46548" stop="45470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46248" g_stop="45770" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E299916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46248" e_stop="45770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAA-TTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGAT</genome_strand>
        <mrna_strand>CTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E283306" ref_strand="+" ref_description="SGN-E283306 [cLER-12-L13]">
      <seq>tttaccttgtttgtgcaaaccatcacacatacgatgtcgttttgaaggtttcttcctttctctgtattccgttagacaaggtttttttcaagagaagtagaggttgaggggggaatcatcactatccttgtttttgtaattaggaagacttttgatcaatgtggagtagtttaattatcttatgctgctagtgatagttggttgtttgcttagctttgtccaataatggttgctgctggttctttgcagttgtcccattattgggggacttgcaagaaccatgagcgccttaagaaatattcgcctatacagaacacacttggaaggaacaggtggcgttcttgttgcacaaatctgtcatctttttcatcacggcaggactcttggagtatccatcactcaagaggattgcaagtgaagaaacatgtgctcccatatagaagcaatttgttgaagtgtaattctttcctaaaacctgaccaagcttttgacatttctgtaaagaatgctgctattatactgaaaagatcatacaatagcttacaaggaagcccacatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="59730" stop="62404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60030" g_stop="60109" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60110" i_stop="60416" i_length="307">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60417" g_stop="60648" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="312" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60649" i_stop="61028" i_length="380">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61029" g_stop="61088" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="372" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61089" i_stop="61465" i_length="377">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61466" g_stop="61620" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="527" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61621" i_stop="62069" i_length="449">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62070" g_stop="62104" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="562" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E283306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60030" e_stop="60109"/>
          <exon e_start="60417" e_stop="60648"/>
          <exon e_start="61029" e_stop="61088"/>
          <exon e_start="61466" e_stop="61620"/>
          <exon e_start="62070" e_stop="62104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAGGTTAGTTTCATCATCTTCATCTTCTTGGTAGTTTCCTGTATGTATTTTATTATTATTTTGAAAGTTGAGTTTTTTGGTTCAATGGCTTCAAATTGTCAATTTTCTGTATTTCTTTTTTCAGTTTTTATTGGAAATGGATTAGTAGAAATTTGAATTCTGTGAAAAAAGAAAATACCCATGTAAAAAGATTTGATTTTTCATTCAAATTCCAATTCTGGAGGCTGATTTTTAGGGTAGAATTAAGACTAGGGTTATATTAATGACTTAATTTCAATTCTGATGATGTTTTCGATTATGGGTTTTGCAGGTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAGGTACCTGTTCGACTTGGTTATATGTTTTATTTACATCACTAGTTCTTCTTTCTATATTGAGTGAAGGGTTGAAAACACGCCAAAATTATCCGTTTTTTCGAGTTTCATACTCTGAACTATCATCAATTATTTATCAAAACATACATCTGTTGTTCCGTTTTCCTATCATTCGAATGATGGTGATATTTCGTGTAGGAAAAGGGATCAAGTGATAGTTGAGGTGTATTTTGATAAATAGTTGATGAAAGTTCAGGTAGATAGGAAACTCACATACGTGGTAGTTCAAGTATGAAACTTGAATAAAAAGAGATACTTTATGTGTGTTTTTGACCATTAACTCTTCCATTATATTTGGTTTAATTCCACTTGCTTCCTTATAGAACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCAGTAAGTACTTCTGATTGCAAGTGGATGACTTCTTTGGATTCCGGGAAAAATTGGTGTAAATTGAACAATTTAAATGAGAAATGGAGTCCTCGCTCCTCATAAGGTCTAAAAAGGGAAGGAAAAAAAGGAGAAGAAGAAAAGTCTAGAGGAAAAAAAGGGAAGAAAGAAGAGAATACTCCAACAGAAAAATAAGGTGGCAATCTTGTAGTAAAAGAATTAGCTCAACGGGTATTATTTCTTAGGATAGTGTAATCTATGCAAATAGGGTGCTTGCGCTTTTTCCTTGTGTATATTCTCTGTCATTCAGTTGTGGTAATGTATTTGGCTTCAGAAATTTGTTTTAACTCACTAAATTTTCTGTTATGTTACATTTTCAGCGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAGGTAATTCTTGTTTGTGTTCAATAAGAGAAGACTATGCGTGTATTGTATGAATAGATCTGTGTAAAAATGAACAAATTGGAAATTCAAGATTAGATGACGATGATAGTTTTGAACAATGCTTGAATTAGGAGGGTAGCTATAGTATCTCAATAGAGATTGTTAAGAAACTAAGTTAAAGCAGCTATCTACACTGTGTGGCGGAACCCTTTAATTTTTTTAGATCTAATATATTGAGTTGAGTTTAGGTGTCTTGTAATGATTTACTAACCATAGTAAATAGGATGAGGTCTACCTGCTTATTTTGAGGAGAAAGCAATAGTTTCTTTATAGCACAACTTGTATGCACATACTTTTGTACCAGCGGCCAGATTTCACTTCTTTACCTGTTTAACGTAGGTTATATTGTTTCCTCGTAATTTAATTAAGAAGATTATTGTTGATTCATGCAGATCATACAATAGCTTACAAGGAAGCCCACATCTGC</genome_strand>
        <mrna_strand>TTTACCTTGTTTGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAG...................................................................................................................................................................................................................................................................................................................GTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAG............................................................................................................................................................................................................................................................................................................................................................................................AACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACAAATCTGTCATCTTTTTCATCA.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGGACTCTTGGAGTATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACAATAGCTTACAAGGAAGCCCACATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E257956" ref_strand="+" ref_description="SGN-E257956 [cLEG-48-I16]">
      <seq>ttggatgtcagtaagataaataatattgtagctgacatgcgcaaagttttggcaaagaatccccaagttgagcaacagaggttacatagaagagtgttcctggagaatgtcaaccctgaaaatcaagctctgttgatcttaatatcctgctttgtcaagacatcacacttcgaggaatacttgtgtgtcaaggaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="64405" stop="67131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64705" g_stop="64725" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64726" i_stop="64813" i_length="88">
            <donor d_prob="0.217" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64814" g_stop="64927" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="135" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64928" i_stop="65825" i_length="898">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65826" g_stop="65882" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="192" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65883" i_stop="66646" i_length="764">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66647" g_stop="66831" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="377" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E257956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64705" e_stop="64725"/>
          <exon e_start="64814" e_stop="64927"/>
          <exon e_start="65826" e_stop="65882"/>
          <exon e_start="66647" e_stop="66831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTCAGTAAGATAAATGTGAGCATTACTTCACTCGCGTAGCCAAGAAAATACAGCAAAATAAGTTATACTACTGATGTTTGATCTTACCATGACTTTTCTGTAGAATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTGGTTAGTGTCATTGTTTGATTATTAATATCTTGTGACTTTTGGATGGATCGTCATTATCAGTGTAAAGGTTGCTTTAGTTACATGCTTTCCTAACCAGTATGTTTCGAAAATTATCTTGGGTGCTTTTACTTCTCTCGGGCGTAAGAGTGTCTGGTGTGCTTGCAATTTTCTAGATCTGGAGTACCCAGAGTTATTTCATAAATTGTGGCTGCTGCTTTGGTTGCCCCCAGATATAATGGGCTAGAATTGTATCTTAATTGAAGTTGGTAGACTCTTTTAACAAAGAATTAGGGTTGTCTTCCAAACTAATCAATTGAATTGCAGTTCCCGAGCAGGACGTATAGAAAGAAGCAAACTATGTAAACTCAAGGCACACTACCTTGTGCCCATTTACTGAAGATTTGTGCTTCGTGAGTATCAGTGAGACCATTATATTAGTTCACCTCGTGATCTATTTACCTTGAGAACTGGTACTTAAAGCAAGTAAATCAAGAAGTACCACTCTCCTTCTTTGATTCAAGGTAGCGTAAAGTATAACCAGAACACAGTATGTGAATATTATCTAAGTTCATTATGTAATGGCAGTATATCAAATTGACTGATGATCTTTCCATTTGCTCATGGTCCAGTTGAACCTAGTCCACCCTGCTTGCCTGCTTTCAATCTGTTATTACTTGGGGTTATGGCTAACCATCCATTTAGCGTACTCTGTATGTCAGGGAAACAATTGTTGTCATGTGTGTGTTTGTTTGTACGGTTTGGCAAGTGAGAGACTCAGAAATTCTCGAAATGCTCCTCAACATGTTTTTCTGTCTCACATGAAAAGTTGCTTGACATTCTTGAAATTCTATCCGCCGGTTTATATACTCTTGTAAATATCTGCTTCATTATTGTGCAGATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAGGTGAGTGAAGATGCTGCTACAAATCCTATATGAAGAGTTTCTGTAATCCACAATATTTTGTAAAACAATAAAATGTTCTATCCTCAATTTGAAGCCCACTGATTTCTGTAACTGTAGTATTAATCCTGGCAATGGTAGGAAATTGTCGATAAAATGTTTCTTTCAAAATTCCCATGTATATATGCAAATGTAGTTGATTGTTCCTTGCCGAAGTTCACTTCTCTCCGAACCCTCCCATCACTCACTCCCCAAAAATCAAGTAATTGAAAAGCCACAGTTCTGTAGGTGCCAGTGACAAAATTATTTGTTGGAACTAATGATCTAGTCCAATGAGATGTGCTCTTTTCTATATTCTGCCTGGCTTATGAACAATAGGCAATAAGTTTACTTTATCCAGAAAAGAGTGGAAAAAGAAGGCAATGATTTCTCTGTCTTCTGAGAGGCTTGACACTTGAATGTAGCTAGCTATAAGTAATTTTTCGGCTTCTGAAGGTTGCTTCATCAGATGATTCTTCTGCGTATTACGAATAATCTGCTCATGAAATACGTAGCGATTTGCTGTTTCAAATGTCTGTTTAACAAGAGATGGTTGAAATATGGAATTTGTTAACTGAGATGGAAGTTGACACCTACCTCTTTAATGGTCATTTAGTTTCAGGAAGGATACTTCTCATTTGCTATTGCTAGTCGGTTTTGGTTCCATTTCATTTGGAGATCGACAACTTTGTGTTTTGACTTTTTCTTTTTTTCTTGGATGATATTAGGAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGT</genome_strand>
        <mrna_strand>TTGGATGTCAGTAAGATAAAT........................................................................................AATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E370222" ref_strand="-" ref_description="SGN-E370222 [TUS-28-C24]">
      <seq>tcccctgaaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgaaagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataaaatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattttagtcttgacaaatatattttactatgtaatgtcagtttttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttccaaaaaaaaaaaaaaacccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="69987" stop="16740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69687" g_stop="69661" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68913" g_stop="68344" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="597" r_length="570" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="67893" i_length="451">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67892" g_stop="67873" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="617" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67872" i_stop="66632" i_length="1241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66631" g_stop="66608" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="641" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E370222" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69687" e_stop="69661"/>
          <exon e_start="68913" e_stop="68344"/>
          <exon e_start="67892" e_stop="67873"/>
          <exon e_start="66631" e_stop="66608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGAAAACTCCCTTTGACTTGCTAGTTAAGGGTTCTTTGTTACTATAATATAGAGACCGCTAGTTAAGGATGAAATGCGATACAGTTGGCAAGATCTGAATATGTGCCTTTCACCTCATTGAAAGTTTAGAAGCCTTGGATACAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGTTCAAATTTGATAGATTCGTTCTCGAAAACAAGAAGTTTGTTGACTATCTCTGGTAGGATCATTGATTAGATATAGATCACACAAATGGCAAATACATGAATGTGTGCGTCTTCTGTAAACCAGCATGACTGAGAAAAATGACAATTCCTATAGAAGTGCCCAACCAGGCCAATAACCAAAAAAACATGCTACTGGAGGATCAAACTGGACACATGACAATAGCACATACATAAACTAACATGATTAACTCCTATAAGTTGACCAATTTTATACTAGAGTGATAGGCTAAATACTTCACTATCCTGGAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCCATTTTGTCAACTTTGGGATCAAGTTTCAAGTCAGAAAGTGGCACATCCTTACCATTAGAGTTAGCTGGAAGTGTTTCTTTGATTTTAGGATCAGATGCAGGTCTGCTCTTGGTTTCAACCTTGCTGTCAGGTGCCGGTTTCATGGTAGCCTTTTCCTTGGTATCTTCTTCACCATTCACGCGAATTGGTCGACCTTTTGTGCGATCTTCCCCATTGACTTTATAAGATGGCTCAATCAGTAGCAACGGACGAGTTGATGCTGCTCCACGACTGAAGGCAGAATCATATGTCATGTTGTCCAAGTCAGCATCACTATATATTTTCTGAACTGTACGGATGGGAGTAGCAAGCCGAGCTCGGTGATGTCGAATGACTCTGAGAAGATCTAACAAAATTGCTTCCTAATATCATCCAAGAAAAAAAGAAAAAGTCAAAACACA</genome_strand>
        <mrna_strand>TCCCCTGAAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAAAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAAATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTTTAGTCTTGACAAATATATTTTACTATGTAATGTCAGTTTTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAACCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E739235" ref_strand="+" ref_description="SGN-E739235 [LC16CE07]">
      <seq>catgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaaaaagagctgtctcccccaccaaatccagcagaatcgaaagaaatggctactagccgtagtagtagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66345" stop="67821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66647" g_stop="67521" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="878" r_length="875" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E739235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66647" e_stop="67521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGC</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAAAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAAGAAATGGCTACTAGCCGTAGTAGTAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E740866" ref_strand="+" ref_description="SGN-E740866 [LC23AH09]">
      <seq>ccgatgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66345" stop="67801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66647" g_stop="67501" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="860" r_length="855" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E740866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66647" e_stop="67501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACT</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E736320" ref_strand="+" ref_description="SGN-E736320 [LC05AH05]">
      <seq>aatgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66345" stop="67775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66647" g_stop="67475" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="832" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E736320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66647" e_stop="67475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATC</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E389928" ref_strand="+" ref_description="SGN-E389928 [TUS-4-N16]">
      <seq>aatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaaagagacattgttcttggtgttgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66427" stop="67719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66727" g_stop="67419" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E389928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66727" e_stop="67419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCT</genome_strand>
        <mrna_strand>AATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAAGAGACATTGTTCTTGGTGTTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E233749" ref_strand="+" ref_description="SGN-E233749 [cLED-14-M19]">
      <seq>atatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66428" stop="67458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66728" g_stop="67158" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E233749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66728" e_stop="67158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGC</genome_strand>
        <mrna_strand>ATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E699517" ref_strand="+" ref_description="SGN-E699517 [FA10BE06]">
      <seq>ccttgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacgggcagcgttcaaacagacctaattctacagctcccgatcagtcgagtaaagacaattgatccacctatgttttcactaacagttcatgtgacactaattcattgtcaacaccagatttgatgttacatggtccattgaaaagagttgtcttgatttccaggatagtgaagtatttaccctatccctctagtataaaattggtcaacttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66568" stop="68065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66867" g_stop="67765" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E699517" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66867" e_stop="67765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTAGCCTATCACTCTAGTATAAAATTGGTCAACTTATAG</genome_strand>
        <mrna_strand>CCTTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTACCCTATCCCTCTAGTATAAAATTGGTCAACTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E389669" ref_strand="+" ref_description="SGN-E389669 [TUS-4-N16]">
      <seq>acttcactatcttccaaatcaagacaactcttttcaatggaccatgtaacatcaaatctggtgttgacaatgaattagtgtcacatgaactgttagtgaaaacataggtggatcaattgtctttactcgactgatcgggagctgtagaattaggtctgtttgaacgctgcccgtcttgtttatctttctctgcaatggtagaagcattactactactacggctagtagccatttccttcgattctgctggatttggtgggggagacagctcttcttcaattggaagggttctttttgaaccctcgagagcaacaccaagaacaatgttctcttccaatgcaggtttcgatggcacagatggttgtgagacttgttgtttttcatcttctctcttaggtagtgaagtagatgggacatttcctgttttctctctaacatctgatggagaagttgcggaattatcaactacatttgtcgtgcgaccaatcccctggcttaccttctcaacttgcttgttgctagagatgttctctggaggatctttggaatcagaagtaccaacttctgcagacttaagctcagcttttgggaccggttgtgaagtgtttttcactgttgctttactcgattttggatcagacgatgctttaatgtcatctttggattcagcatgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68024" stop="66748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67724" g_stop="67048" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E389669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67724" e_stop="67048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCACTATCCTGGAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCC</genome_strand>
        <mrna_strand>ACTTCACTATCTTCCAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E733111" ref_strand="+" ref_description="SGN-E733111 [LB04AA06]">
      <seq>cgtgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacgggcagcgttcaaacagacctaattctacagctcccgatcagtcgagtaaagacaattgatccacctatgttttcactaacagttcatgtgacactaattcattgtcaacaccagatttgatgttacatggtccattgaaaagagttgtcttgatttccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="66919" stop="68017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67217" g_stop="67723" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E733111" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67217" e_stop="67723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAG</genome_strand>
        <mrna_strand>CGTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E746139" ref_strand="+" ref_description="SGN-E746139 [GI|47104915]">
      <seq>gatattatatggaaggggagagataggtgcccccatgggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcattattgcctagttctgtttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74496" stop="68017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74196" g_stop="74161" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74160" i_stop="73972" i_length="189">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73971" g_stop="73808" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="200" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="263" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="345" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="416" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="505" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71294" g_stop="71091" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="709" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="980" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1208" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1209" r_stop="1406" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="68913" g_stop="68306" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1407" r_stop="2014" r_length="608" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E746139" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2014</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74196" e_stop="74161"/>
          <exon e_start="73971" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGA</genome_strand>
        <mrna_strand>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCAT.............................................................................................................................................................................................GGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E227568" ref_strand="-" ref_description="SGN-E227568 [cLEL-30-L12]">
      <seq>tgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccctatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtccccccgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="69031" stop="68043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68731" g_stop="68344" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="414"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E227568" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68731" e_stop="68344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</genome_strand>
        <mrna_strand>TGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCCTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCCCCCCGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E227350" ref_strand="-" ref_description="SGN-E227350 [cLEL-30-L12]">
      <seq>cctgattgtatgtgccaagcttgagagggcctcccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgcccccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="69027" stop="68043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68727" g_stop="68344" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="410"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E227350" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227350" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68727" e_stop="68344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</genome_strand>
        <mrna_strand>CCTGATTGTATGTGCCAAGCTTGAGAGGGCCTCCCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCCCCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E577812" ref_strand="-" ref_description="SGN-E577812 [LE15DH01]">
      <seq>cttaagaagtttgttcccntgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70129" stop="68104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69829" g_stop="69661" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68913" g_stop="68405" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="677" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="702"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E577812" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577812" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69829" e_stop="69661"/>
          <exon e_start="68913" e_stop="68405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CTTAAGAAGTTTG-TTCCCNTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E712354" ref_strand="+" ref_description="SGN-E712354 [FB04CE02]">
      <seq>caatacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacattgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctattcttgacagatatattttactatggaatgtcagttcttgtagtttattcaaaagggtgggttgtttcaacataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="69139" stop="68104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68839" g_stop="68405" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E712354" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68839" e_stop="68405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CAATACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACATTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTATTCTTGACAGATATATTTTACTATGGAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGGTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E370385" ref_strand="-" ref_description="SGN-E370385 [TUS-28-K11]">
      <seq>ctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcgggaaacgcagggttcagcccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70319" stop="68119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70019" g_stop="69973" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="245" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68913" g_stop="68414" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="745" r_length="500" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E370385" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70019" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTG</genome_strand>
        <mrna_strand>CTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGAAACGCAGGGTTCAGCCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E578319" ref_strand="-" ref_description="SGN-E578319 [LE12CC08]">
      <seq>agctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaccaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70321" stop="68158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70021" g_stop="69973" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="247" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68913" g_stop="68455" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="706" r_length="459" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E578319" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70021" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTT</genome_strand>
        <mrna_strand>AGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACACCAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E224218" ref_strand="+" ref_description="SGN-E224218 [cLEL-19-F12]">
      <seq>tttattgtacaacatattttttccacccctaccgtaaaatctcaacgtggtgacacataaatataaattaccccctacaagtcaacaaaaggggtggcatcttatttataactataatataaggcataataaacattaatttgatgtccaaacaaatagtgataaagatctatatggtaggccctctcaagcttggcacatacaatcaggagcaggatatgtatagagggattgcttgggtttgcggagtctgatttggccttgtctgttttggtgcccttcaattactgattcttgaaactcaggccaagtgagtgttttgttcaagaaaagctggcctaacaatgccatatttggccttattgtcttcatattgttgtatgttctctgaccgaccattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68220" stop="69222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68518" g_stop="68922" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E224218" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68518" e_stop="68922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTATTGTCTTCATATTGTTGTATGTTCTCTGTCCGACCTGTCAATT</genome_strand>
        <mrna_strand>TTTATTGTACAACATATTTTTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACATTAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTTTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTATTGTCTTCATATTGTTGTATGTTCTCTGACCGACCATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E224069" ref_strand="+" ref_description="SGN-E224069 [cLEL-19-F12]">
      <seq>tttattgtacaacatattccttccacccctaccgtaaaatctcaacgtggtgacacataaatataaattaccccctacatgtcaacaaaaggggtggcatcttatttataactataatataaggcataataaacaataatttgatgtccaaacaaatagtgataaagatctatatggtaggcccttttaagcttggcacatacaatcaggagcaggatatgtatagagggattgcttgggtttgcggagtctgatttggccttgtctgttttggtgcccttcaattactgattcttgaaactcaggccaagtgagtgtcttgttcaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68220" stop="69150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68518" g_stop="68850" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E224069" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68518" e_stop="68850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAG</genome_strand>
        <mrna_strand>TTTATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACATGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTTTTAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E268575" ref_strand="+" ref_description="SGN-E268575 [cLEI-13-F9]">
      <seq>ttccttccacccctaccgtaaaatctcaacgtggtgacacataaatataaattaccccctacaagtcaacaaaaggggtggcatcttatttataactataatataaggcataataaacaataatttgatgtccaaacaaatagtgataaagatctatatggtaggccctctcaagcttggcacatacaatcaggagcaggatatgtatagagggattgcttgggtttgcggagtctgatttggccttgtctgttttggtgcccttcaattactgattcttgaaactcaggccaagtgagtgtcttgttcaagaaaagctggcctaacaatgccatatttggcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="68234" stop="69179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68534" g_stop="68879" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E268575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68534" e_stop="68879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTA</genome_strand>
        <mrna_strand>TTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E316547" ref_strand="+" ref_description="SGN-E316547 [cTOA-25-D11]">
      <seq>tttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70421" stop="68252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70121" g_stop="69973" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="347" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68913" g_stop="68552" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="709" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E316547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70121" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTA</genome_strand>
        <mrna_strand>TTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E299446" ref_strand="+" ref_description="SGN-E299446 [cLET-43-L1]">
      <seq>cattattggctgcagttgattattatgttggcatgcacagagatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattggatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgcttattatgccttatattatagttataaataagatgccaccccttttgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70046" stop="68298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69746" g_stop="69661" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68913" g_stop="68598" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="402" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E299446" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69746" e_stop="69661"/>
          <exon e_start="68913" e_stop="68598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGAC</genome_strand>
        <mrna_strand>CATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGAGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGGATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGCTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E731420" ref_strand="+" ref_description="SGN-E731420 [LA27AC10]">
      <seq>gtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgcccagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70926" stop="68357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70626" g_stop="70436" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="419" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="617" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68913" g_stop="68657" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="874" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E731420" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70626" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAA</genome_strand>
        <mrna_strand>GTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCCAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E703686" ref_strand="+" ref_description="SGN-E703686 [FA22AG05]">
      <seq>ttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactcccgcaaaccaaagcatccctctatacatatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71419" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71119" g_stop="71091" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="300" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="726" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68913" g_stop="68730" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="910" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E703686" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71119" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACT-CCGCAAACCCAAGCAATCCCTCTATACATATCCTG</genome_strand>
        <mrna_strand>TTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCCGCAAACCAAAGC-ATCCCTCTATACATATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E729029" ref_strand="+" ref_description="SGN-E729029 [LA19DA04]">
      <seq>gcaggcttttacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70507" stop="68452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70450" g_stop="70436" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="243" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="441" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68913" g_stop="68752" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="603" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E729029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70450" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAG</genome_strand>
        <mrna_strand>GCAGGCTTTTACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E698850" ref_strand="+" ref_description="SGN-E698850 [FA07DB08]">
      <seq>aagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70768" stop="68515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70468" g_stop="70436" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="261" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="459" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68913" g_stop="68815" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="558" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E698850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70468" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTT</genome_strand>
        <mrna_strand>AAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E370223" ref_strand="+" ref_description="SGN-E370223 [TUS-28-C24]">
      <seq>ttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70896" stop="68536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70596" g_stop="70436" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="389" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="587" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68913" g_stop="68836" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="665" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E370223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70596" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAG</genome_strand>
        <mrna_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E270625" ref_strand="+" ref_description="SGN-E270625 [cLEM-6-E9]">
      <seq>ttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70896" stop="68584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70596" g_stop="70436" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="389" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="587" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68913" g_stop="68884" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="617" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E270625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70596" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAG</genome_strand>
        <mrna_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E707898" ref_strand="+" ref_description="SGN-E707898 [FA34BB04]">
      <seq>cgtatctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71540" stop="68591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71240" g_stop="71091" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="421" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="649" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69858" g_stop="69661" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="847" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68913" g_stop="68891" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="870" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E707898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71240" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69661"/>
          <exon e_start="68913" e_stop="68891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAA</genome_strand>
        <mrna_strand>CGTATCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E710896" ref_strand="+" ref_description="SGN-E710896 [FA57BB06]">
      <seq>ccgtaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctccccctggaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71530" stop="69373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71232" g_stop="71091" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="412" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="640" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69858" g_stop="69673" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="827" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E710896" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71232" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCT-CCCCTGGAAATATG</genome_strand>
        <mrna_strand>CCGT-AAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCCTGGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E260735" ref_strand="+" ref_description="SGN-E260735 [cLEG-54-H8]">
      <seq>gacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71542" stop="69412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71242" g_stop="71091" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="423" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="651" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69858" g_stop="69712" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="798" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E260735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71242" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</genome_strand>
        <mrna_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E321161" ref_strand="+" ref_description="SGN-E321161 [cTOB-13-J17]">
      <seq>agcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaagtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaagaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70910" stop="69412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70610" g_stop="70436" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="403" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69712" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="550" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E321161" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70610" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</genome_strand>
        <mrna_strand>AGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAAGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAAGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E725552" ref_strand="+" ref_description="SGN-E725552 [LA04AB04]">
      <seq>attttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacacactcgcctatatcttgcctnccataaggtttatggcggggaacgcangggttcagccttaagagttngtttcccctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="70982" stop="69503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70682" g_stop="70436" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="474" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69858" g_stop="69803" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="529" r_length="55" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E725552" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70682" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGA</genome_strand>
        <mrna_strand>ATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAAC-ACACTCGCCTATATCTTGCCTNCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCANGGGTTCAGCCTTAAG-AGTTNGTTTCCCCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E703913" ref_strand="+" ref_description="SGN-E703913 [FA22DC11]">
      <seq>aagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaaaaagtttgtttcccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71701" stop="69506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71401" g_stop="71374" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71294" g_stop="71091" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="232" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="503" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="69973" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="731" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69858" g_stop="69806" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="784" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E703913" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71401" e_stop="71374"/>
          <exon e_start="71294" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="69973"/>
          <exon e_start="69858" e_stop="69806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGAT</genome_strand>
        <mrna_strand>AAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAAAAGTTTGTTTCCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E259639" ref_strand="+" ref_description="SGN-E259639 [cLEG-42-O15]">
      <seq>gacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtantttggggaggaagggtcatcaactctcaatttactgatgaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71542" stop="69776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71242" g_stop="71091" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="423" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70076" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="548" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E259639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71242" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="70076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATT</genome_strand>
        <mrna_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTANTTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E282818" ref_strand="+" ref_description="SGN-E282818 [cLER-15-G22]">
      <seq>aagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71462" stop="69828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71162" g_stop="71091" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="343" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="416" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E282818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71162" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="70128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGC</genome_strand>
        <mrna_strand>AAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E299324" ref_strand="+" ref_description="SGN-E299324 [cLET-43-H2]">
      <seq>gatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctgtgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71584" stop="69830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71284" g_stop="71091" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="465" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70130" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="536" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E299324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71284" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="70130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAG</genome_strand>
        <mrna_strand>GATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTGTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E294819" ref_strand="+" ref_description="SGN-E294819 [cLET-17-H12]">
      <seq>tcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71529" stop="69839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71229" g_stop="71091" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70706" g_stop="70436" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="410" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70139" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="472" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E294819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71229" e_stop="71091"/>
          <exon e_start="70706" e_stop="70436"/>
          <exon e_start="70200" e_stop="70139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGC</genome_strand>
        <mrna_strand>TCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E271017" ref_strand="+" ref_description="SGN-E271017 [cLEM-22-J15]">
      <seq>gcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71008" stop="70141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70712" g_stop="70441" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E271017" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70712" e_stop="70441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTG</genome_strand>
        <mrna_strand>GCAGAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E370386" ref_strand="+" ref_description="SGN-E370386 [TUS-28-K11]">
      <seq>cctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagaggttagtcacaacattgttttttttgaagattttggtctagttgtatgatagtcatgtaaactgtgttcagtctctcaacccacccgtatgacaaagtacatgtataattggtaaattactggcaggatttagtgctcaaaacttaagggaattctacaaaagttccattgcccagtattttactattcattttaagttgtatgttcccttaaaccaaaaatttaagttaggcatggactaaacattatgtgtttgatttatttcttgatatgatcatattttgttcgttcagttattagcttctgaaggtagtaattctcttatcagccttttgctggaatttgtgacattgctttgtatattaatattttatgaatggatcagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71518" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71218" g_stop="70541" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E370386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71218" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCT</genome_strand>
        <mrna_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E332097" ref_strand="+" ref_description="SGN-E332097 [cTOD-16-G2]">
      <seq>caaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtagagtcaacttttcagcattggcctatgttcctcacatcagacaactcggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="72343" stop="70271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72043" g_stop="71994" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="132" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="203" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71294" g_stop="71091" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="496" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70706" g_stop="70571" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="632" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E332097" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72043" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71091"/>
          <exon e_start="70706" e_stop="70571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGAT</genome_strand>
        <mrna_strand>CAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAGAGTCAACTTTTCAGCATTGGCCTATGTTCCTCACATCAGACAACTCGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E247316" ref_strand="+" ref_description="SGN-E247316 [cLEF-46-H23]">
      <seq>tctgatttgaatgctccaaaattcaagcactcacttcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="72356" stop="70325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="66" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="148" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="219" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="308" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71294" g_stop="71091" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="512" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70706" g_stop="70625" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="594" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E247316" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71091"/>
          <exon e_start="70706" e_stop="70625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGT</genome_strand>
        <mrna_strand>GATTTGAATGCTCCAAAATTCAAGCACTCACTTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E272059" ref_strand="+" ref_description="SGN-E272059 [cLEM-8-D12]">
      <seq>cctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagaggttagtcacaacattgttttttttgaagattttggtctagttgtatgatagtcatgtaaactgtgttcagtctctcaacccacccgtatgacaaagtacatgtataattggtaaattactggcaggatttagtgctcaaaacttaagggaattctacaaaagttccattgcccagtattttactattcattttaagttgtatgttcccttaaaccaaaaatttaagttaggcatggactaaacattatgtgtttgatttatttcttgatatgatcatattttgttcgttcagttattagcttctgaaggtagtaattctcttatcagccttttgctggaatttgtgacattgctttgtatattaatattttatgaatggatcagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="71518" stop="70349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71218" g_stop="70649" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E272059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71218" e_stop="70649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCC</genome_strand>
        <mrna_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E311918" ref_strand="+" ref_description="SGN-E311918 [cTOA-15-F16]">
      <seq>actcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="72331" stop="70352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72031" g_stop="71994" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="120" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="191" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="280" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71294" g_stop="71091" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="484" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70706" g_stop="70652" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="539" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E311918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72031" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71091"/>
          <exon e_start="70706" e_stop="70652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATG</genome_strand>
        <mrna_strand>ACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E327450" ref_strand="+" ref_description="SGN-E327450 [cTOC-19-H9]">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaagggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaagcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74368" stop="70835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74068" g_stop="73808" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71657" g_stop="71590" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="474" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="563" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71135" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="723" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E327450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74068" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71657" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCT</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAAGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAAGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E697222" ref_strand="+" ref_description="SGN-E697222 [FA01AG01]">
      <seq>gaggagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatcttngatgtggatcacttcatcaatgcattgaaagccgacgtagctatagtcanagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74236" stop="70864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73941" g_stop="73808" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="196" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="278" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71657" g_stop="71590" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="346" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="435" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71164" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="566" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E697222" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73941" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71657" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTA</genome_strand>
        <mrna_strand>GAG-GAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTNGATGTGGATCACTTCATCAATGCATTGAAAGCCGACGTAGCTATAGTCANAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E333722" ref_strand="+" ref_description="SGN-E333722 [cTOD-22-O7]">
      <seq>tgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaatcctgtttggcaaattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74445" stop="70901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74145" g_stop="73808" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="401" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="483" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="554" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="641" r_length="87" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71201" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="735" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E333722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74145" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</genome_strand>
        <mrna_strand>TGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGT-AATCCTGTTTGGCAA-ATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E333842" ref_strand="+" ref_description="SGN-E333842 [cTOD-24-C17]">
      <seq>ctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttgggacaccaaggatggaaaccttgtactanatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaatctgaatgccacacttgtgatccctcagttggaaagtaatcctgtttggcaagattcaagctcattcgaggatatncttgatgtggatcactttcatcatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74385" stop="70901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74085" g_stop="73808" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="341" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="423" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="494" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="582" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71201" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="676" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E333842" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74085" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCAC-TTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</genome_strand>
        <mrna_strand>CTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGGACACCAAGGATGGAAACCTTGTACTANATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAA-TCTGAATGCCACACTTGTGATCCCTCAGTTGGAAAGTAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATNCTTGATGTGGATCACTTTCATC-ATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E333596" ref_strand="+" ref_description="SGN-E333596 [cTOD-22-O2]">
      <seq>agagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctcccaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacaccttttgaaacaccanngatggnaacntgtactaaatctgatgctgcatccataccctgaaaatctgaggnatacgnntcagtgttccttgatggtggactnaaatcacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagatttcagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74478" stop="70909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74178" g_stop="73808" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="516" r_length="82" r_score="0.902"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.807" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71657" g_stop="71590" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="584" r_length="68" r_score="0.838"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="0.86"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="673" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71209" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="759" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E333596" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74178" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71657" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACC-TTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACT-AAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAAT</genome_strand>
        <mrna_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCCAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTTGAAACACCANNGATGGNAA-CNTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCCTGAAAATCTGAGGNATACGNNTCAGTGTTCCTTGATGGTGGACTNAAATC-ACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTTCAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E312314" ref_strand="+" ref_description="SGN-E312314 [cTOA-5-E3]">
      <seq>ccttttttttattttgctttatattttcattagggcgggtgagccaggataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaagcttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74304" stop="70944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74004" g_stop="73808" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="343" r_length="81" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71657" g_stop="71590" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="411" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71374" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71294" g_stop="71244" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="551" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E312314" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74004" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71657" e_stop="71590"/>
          <exon e_start="71462" e_stop="71374"/>
          <exon e_start="71294" e_stop="71244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCTTTATTTTGCTTTATATTTTCATTAGGG-GGGTGAGCCA-AATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGA</genome_strand>
        <mrna_strand>CCTTTTTTTTATTTTGCTTTATATTTTCATTAGGGCGGGTGAGCCAGGATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGG-AAGCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E729401" ref_strand="+" ref_description="SGN-E729401 [LA20DG11]">
      <seq>tgaaaaaagatgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagctggaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74373" stop="71097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74073" g_stop="73808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="328" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="410" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="481" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71397" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="547" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E729401" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74073" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTA</genome_strand>
        <mrna_strand>TGAAAAAAGA-TGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGCTGGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E247911" ref_strand="+" ref_description="SGN-E247911 [cLEF-47-J19]">
      <seq>gagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74477" stop="71109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74177" g_stop="73808" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="515" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="586" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71409" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="640" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E247911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74177" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCT</genome_strand>
        <mrna_strand>GAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E302380" ref_strand="+" ref_description="SGN-E302380 [cLEW-27-O20]">
      <seq>aattgataaagacaacccacccccaaagcatttacacttcacaaaaactaatttttgtagcagtaaaatcacttcagtgtggcagctcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74643" stop="71140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74343" g_stop="74257" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74256" i_stop="73939" i_length="318">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73938" g_stop="73808" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="218" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="363" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="434" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71462" g_stop="71440" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="457" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E302380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74343" e_stop="74257"/>
          <exon e_start="73938" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGC</genome_strand>
        <mrna_strand>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCT..............................................................................................................................................................................................................................................................................................................................CAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E321101" ref_strand="+" ref_description="SGN-E321101 [cTOB-13-O1]">
      <seq>agagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74478" stop="71278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74178" g_stop="73808" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="516" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71590" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="587" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71452" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="598" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E321101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74178" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71590"/>
          <exon e_start="71462" e_stop="71452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGC</genome_strand>
        <mrna_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E329266" ref_strand="+" ref_description="SGN-E329266 [cTOD-2-J4]">
      <seq>ccatgtgatatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaagcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggttttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74464" stop="71282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74164" g_stop="73808" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="420" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="502" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71657" g_stop="71590" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="570" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71462" g_stop="71453" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="580" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E329266" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74164" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71657" e_stop="71590"/>
          <exon e_start="71462" e_stop="71453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATG</genome_strand>
        <mrna_strand>CCATGTGATATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAAGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGTTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E294295" ref_strand="+" ref_description="SGN-E294295 [cLET-14-F2]">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctgggcttattgaggatattttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74368" stop="71304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74068" g_stop="73808" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71604" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E294295" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74068" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGGCTTATTGAGGATATTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E294296" ref_strand="+" ref_description="SGN-E294296 [cLET-14-F2]">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctgggcttattgaggatattttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74368" stop="71304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74068" g_stop="73808" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71604" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E294296" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74068" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGGCTTATTGAGGATATTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E272518" ref_strand="+" ref_description="SGN-E272518 [cLEM-21-K11]">
      <seq>agagataggtgcccccatgtgagatgcttttactgaggctcatagtgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74478" stop="71343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74178" g_stop="73808" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="516" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71643" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="534" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E272518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74178" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTG</genome_strand>
        <mrna_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAGTGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E341021" ref_strand="+" ref_description="SGN-E341021 [cTOF-5-H14]">
      <seq>aattggtgtaaacacctttgcatcttgataattgataaagacaacccacccccaaagcatttacacttcacaaaaactaatttttgtagcagtaaaatcacttcagtgtggcagctgtaagcttgctgtttgcttgtttggttttattatatgcattgatttttggtatatgtgttgatattatatggaaggggagagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatncacagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74672" stop="71508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74372" g_stop="73808" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="628" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71810" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="710" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71660" g_stop="71652" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="719" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E341021" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74372" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71810"/>
          <exon e_start="71660" e_stop="71652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTG</genome_strand>
        <mrna_strand>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATNCA.....................................................................................................................................................CAGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E325797" ref_strand="+" ref_description="SGN-E325797 [cTOC-12-C22]">
      <seq>ataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74437" stop="71518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74137" g_stop="73808" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="393" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71818" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="467" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E325797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74137" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGC</genome_strand>
        <mrna_strand>ATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E202154" ref_strand="+" ref_description="SGN-E202154 [cLEC-7-M16]">
      <seq>ggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74471" stop="71551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74171" g_stop="73808" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72056" g_stop="71994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="427" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71891" g_stop="71851" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="468" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E202154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74171" e_stop="73808"/>
          <exon e_start="72056" e_stop="71994"/>
          <exon e_start="71891" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACA</genome_strand>
        <mrna_strand>GGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E245426" ref_strand="+" ref_description="SGN-E245426 [cLEF-53-N2]">
      <seq>taggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="74473" stop="73514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74173" g_stop="73814" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E245426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74173" e_stop="73814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATT</genome_strand>
        <mrna_strand>TAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E707890" ref_strand="+" ref_description="SGN-E707890 [FA34BA08]">
      <seq>ccttgtgttacttaaattacctgattcattttggggaaattatagtgaaaagatttatagttggagtggtcttggttgtaagaatgtagcttgtttaaatgttaagaaattgaatagagattgtgctggtttttgatgttgtaagtagtggggggtatgagaagcaaagatatgttaagggtagagggaaaaatgatttcttgattgatgatgtattgggaatgctgggaaatggtgggggaattagaattggatttgatattggtggtggatctggtacatttgctgttagaatggctgaaaggaatgtgactatagttactgctacgttgaatgtcgatgcaccatttaacgagttcattgctgcacggggtgtattcccgttgtatttgagtttagatcatcggtttccctttcatgataatgtgtttgatttggtacatgtgggaaatgtattggatgtgagcggacgtcctgagaagttagagtttttagtgtttgatattgatagagttttgagggctggagggttgttttggttggataactttctttgttcaaatgaagacaagaaaactgcattaacgaggctgatcgaacgttttgggtacaaaaagcttaaatgggttgttggtgagaagatcaatgggtcgggaaaatctgaggtttatttgtctgctgttctacagaaaccagtaagagtttgatcgtatcgcggggtttctcatagaaaagctgtgcatgttcattattgacatagaataagtgaacgtattcgtcttcttttacacaactgctaaccagcatcataggagggaggcgggttcggctttgtggcaggtattatatgtctacgatctctaagattatcacttatctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="84576" stop="83093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84278" g_stop="83393" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="883" r_length="883" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E707890" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84278" e_stop="83393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGG</genome_strand>
        <mrna_strand>CCTTGTGTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGG-T-TTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTA-TCACTTATCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E700610" ref_strand="+" ref_description="SGN-E700610 [FA13CE05]">
      <seq>gccctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaagaaggaggtgttttgctaagacaatacctaaggttggtttacttaaattacctgattcattttggggaaattatagtgaaaagatttatagttggagtggtcttggttgtaagaatgtagcttgtttaaatgttaagaaattgaatagagattgtgctggttgttttgatgttgcaagtagtggggggtaatgagaagcaaagatatgttaagggtagagggaaaaatgatttcttgaatgatgatgtattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85200" stop="83757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84903" g_stop="84057" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E700610" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84903" e_stop="84057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGT-ATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGG</genome_strand>
        <mrna_strand>GCCCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGCAAGTAGTGGGGGGTAATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGAATGATGATGTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E314972" ref_strand="+" ref_description="SGN-E314972 [cTOA-31-C20]">
      <seq>actgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaagaaggaggtgttttgctaaacaatacctaaggttggtttacttaaattacctgattcattttgggggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85220" stop="83936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84920" g_stop="84236" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E314972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84920" e_stop="84236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTAT</genome_strand>
        <mrna_strand>ACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAA-ACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E700450" ref_strand="+" ref_description="SGN-E700450 [FA13AF05]">
      <seq>gttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaaaaaggacgtgtttttgctaagacaatacctaaggttggtttacttaaattacctgattccttttggggaaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85203" stop="83936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84903" g_stop="84236" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E700450" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84903" e_stop="84236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTG-TTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTAT</genome_strand>
        <mrna_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAAAAGGACGTGTTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCCTTTTGGGGAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E324284" ref_strand="+" ref_description="SGN-E324284 [cTOC-4-O6]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85228" stop="84112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84928" g_stop="84412" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E324284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84928" e_stop="84412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAG</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E306727" ref_strand="+" ref_description="SGN-E306727 [cLEY-19-K22]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaaagtttgatctttctagtcccaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85228" stop="84227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84928" g_stop="84527" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E306727" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84928" e_stop="84527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTT</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAAGTTTGATCTTTCTAGTCCCAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E313035" ref_strand="+" ref_description="SGN-E313035 [cTOA-14-I3]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcaggcagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85228" stop="84230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84928" g_stop="84530" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E313035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84928" e_stop="84530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAA</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGGCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="85053" stop="86423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85361" g_stop="86123" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85361" e_stop="86123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGACCGTGATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGAGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTTTGAACTAATCTCATGTCTGTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTAAAGTAAAAAGAGATGATCATGGGGGATATAATAATGCACGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="86353" stop="87502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86657" g_stop="87202" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86657" e_stop="87202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAATGCTACAACGCATACAATATTAAAAGAAAAG---A-A-ATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="86454" stop="87435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86767" g_stop="87135" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86767" e_stop="87135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="88213" stop="89523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88513" g_stop="89223" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88513" e_stop="89223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTTATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACTCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="88789" stop="90026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89089" g_stop="89726" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89089" e_stop="89726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="88829" stop="90056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89129" g_stop="89756" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89129" e_stop="89756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="88829" stop="90004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89129" g_stop="89704" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89129" e_stop="89704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="88887" stop="90031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89179" g_stop="89731" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89179" e_stop="89731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="89044" stop="90386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89344" g_stop="90086" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89344" e_stop="90086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCAT---G-AAG-C-A-A----GTC-------G---AATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="89540" stop="90520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89840" g_stop="90220" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89840" e_stop="90220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E374818" ref_strand="-" ref_description="SGN-E374818 [TUS-14-P4]">
      <seq>gatcaaccaactccaacaaaagggtatgcatctaatgaaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattatgtatgtaattggtgtattaatctcatgtattcgtctcccatagtttatataaatattattgttagtatctattaacttaattaactagcactaataatcttttataattgaactttgtgacttgtaactatataaaggcttaattatttaattatttgacttttttctgttgctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93304" stop="90973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93004" g_stop="92983" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="64" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="264" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91602" g_stop="91265" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="602" r_length="338" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E374818" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374818" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93004" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAATTTAAATA</genome_strand>
        <mrna_strand>GATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGAAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E244529" ref_strand="+" ref_description="SGN-E244529 [cLED-38-O3]">
      <seq>aaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91452" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="632" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E244529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTAT</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E238569" ref_strand="+" ref_description="SGN-E238569 [cLED-17-L17]">
      <seq>aaaaattggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91464" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="620" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E238569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E233648" ref_strand="+" ref_description="SGN-E233648 [cLED-14-C20]">
      <seq>aaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttggatgttattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91541" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="543" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E233648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGGATGTTATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E374819" ref_strand="+" ref_description="SGN-E374819 [TUS-14-P4]">
      <seq>aaaaaaaaaactcctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="96729" stop="92106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96444" g_stop="96247" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96246" i_stop="93686" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93685" g_stop="93607" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="484" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="526" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92558" g_stop="92406" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="679" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E374819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96444" e_stop="96247"/>
          <exon e_start="93685" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGAT</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E202045" ref_strand="+" ref_description="SGN-E202045 [cLEC-7-P7]">
      <seq>aaaaaaaaaactcctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="96729" stop="92700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96444" g_stop="96247" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96246" i_stop="93686" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93685" g_stop="93607" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93024" g_stop="93000" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="467" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E202045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96444" e_stop="96247"/>
          <exon e_start="93685" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="93000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCA</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-THf7Ff/sgn_ests_tomato" ref_id="SGN-E201380" ref_strand="+" ref_description="SGN-E201380 [cLEC-4-D13]">
      <seq>aaaaaaaaaactcctaatggcttgagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-LBHZJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="96729" stop="93200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96444" g_stop="96247" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96246" i_stop="93686" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93685" g_stop="93607" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93528" g_stop="93500" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="306" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-E201380" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96444" e_stop="96247"/>
          <exon e_start="93685" e_stop="93607"/>
          <exon e_start="93528" e_stop="93500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATT</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTTGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>115</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16180" PGL_stop="15598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16180" e_stop="15598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="16180" e_stop="15598" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16180" stop="15598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16109" stop="15674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTAAAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATA</gDNA_template>
            <first_frame> N  F  K  I  N  Y  S  V  I  L  S  E  P  L  H  L  S  *  F  S  F  L  I  T  R  S  *  H  Y  S  K  F  P  N  Q  N  V  L  R  R  S  T  I  T  V  K  R  R  L  N  R  P  D  P  T  D  P  N  F  T  G  G  E  R  E  R  S  G  G  *  K  S  S  G  P  V  S  *  D  G  G  A  A  G  T  S  *  G  S  G  S  G  A  E  P  A  A  G  R  D  E  E  V  R  L  R  Y  G  N  S  G  M  L  P  Q  A  P  I  Q  G  T  A  S  *  N  P  S  S  G  K  F  E  V  K  M  I  F  M  W  L  K  W  I  I  R  V  S  *  F  M  *  S  C  V  L  *  L  Y  I  L  Q  C  D  I  E  L  L  I  Y  *  T  *  N  T  L  Q  F  Y  C  S  T  C  *  A  *  C  *  S  G  L  E  I  S  N  </first_frame>
            <second_frame>  I  L  K  *  I  I  P  *  F  Y  P  N  P  C  T  F  P  D  S  R  F  *  S  Q  D  R  N  T  I  P  N  F  P  I  K  M  C  Y  G  G  Q  R  L  P  S  K  D  D  L  T  D  P  T  R  R  T  R  T  L  P  A  A  N  E  N  A  V  V  V  E  N  L  R  D  R  L  A  E  T  E  A  R  L  E  R  A  R  A  R  E  A  E  L  S  R  Q  L  E  E  M  K  R  Y  V  C  V  M  E  I  L  E  C  Y  L  K  R  R  Y  R  E  Q  Q  V  R  T  L  A  V  V  N  S  K  *  R  *  F  L  C  G  *  N  G  L  L  G  F  R  D  L  C  N  H  V  C  C  N  C  I  F  F  S  V  I  *  N  C  *  S  I  E  L  E  I  L  F  N  F  I  V  L  R  V  K  L  D  V  N  L  D  *  K  F  Q  I </second_frame>
            <third_frame>   F  *  N  K  L  F  R  N  F  I  R  T  L  A  P  F  L  I  L  V  F  N  H  K  I  V  T  L  F  Q  I  S  Q  S  K  C  V  T  A  V  N  D  Y  R  Q  K  T  T  *  P  T  R  P  D  G  P  E  L  Y  R  R  R  T  R  T  Q  W  W  L  K  I  F  G  T  G  *  L  R  R  R  R  G  W  N  E  L  G  L  G  K  R  S  *  A  G  S  W  K  R  *  R  G  T  S  A  L  W  K  F  W  N  V  T  S  S  A  D  T  G  N  S  K  L  E  P  *  Q  W  *  I  R  S  K  D  D  F  Y  V  V  K  M  D  Y  *  G  F  V  I  Y  V  I  M  C  V  V  I  V  Y  S  S  V  *  Y  R  I  V  N  L  L  N  L  K  Y  S  S  I  L  L  F  Y  V  L  S  L  M  L  I  W  I  R  N  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16113" stop="15781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQDRNTIPNFPIKMCYGGQRLPSKDDLTDPTRRTRTLPAANENAVVVENLRDRLAETEARLERARAREAELSRQLEEMKRYVCVMEILECYLKRRYREQQVRTLAVVNSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22717" PGL_stop="23440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22717" e_stop="23440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="22717" e_stop="23440" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22717" stop="23440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACACAAAAAAATAATAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAGAAGAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAA</gDNA_template>
            <first_frame> T  H  K  K  I  I  K  P  H  L  M  Y  T  Q  T  S  C  K  R  R  T  P  T  I  S  M  T  N  S  T  S  F  T  L  Q  C  V  Q  T  L  L  I  I  F  N  F  I  A  T  I  Y  R  A  Y  S  N  S  Q  Y  S  F  L  A  F  I  F  F  I  Y  F  S  A  Y  L  A  N  N  L  S  S  T  Y  R  N  I  Q  S  K  N  K  S  F  E  K  S  L  L  G  F  A  I  W  F  L  Y  S  S  I  I  F  G  F  V  Y  Q  F  Y  P  F  F  G  F  W  A  G  L  P  I  H  I  V  A  I  I  I  S  G  V  V  F  Y  D  Y  V  I  C  D  K  Q  D  G  D  N  S  H  N  F  R  Y  F  G  S  S  N  D  Q  M  K  R  G  Y  Y  C  E  E  K  W  E  V  I  W  E  K  V  *  V  T  K  E  I  S  V  H  F  T  D  S  R  *  D  *  I  T  K  I  Y  C  T  *  F  Y  L  Q  I  F  V  L  L  G  S  N  K  A  C  L  F  V  H  *  Y  Q  S  Q  C  Y  V  L  N  F  P  K  </first_frame>
            <second_frame>  H  T  K  K  *  *  N  P  T  *  C  I  H  K  L  V  V  K  E  E  L  Q  L  Y  P  *  Q  T  L  H  H  S  H  Y  N  V  F  K  P  Y  *  S  Y  S  I  L  L  L  Q  Y  I  E  H  I  L  T  V  N  I  R  S  *  L  S  S  F  S  Y  I  L  V  L  T  W  Q  I  T  Y  H  L  H  I  E  T  F  N  R  K  I  S  L  L  R  R  A  C  W  D  L  L  Y  G  S  C  I  L  P  L  F  L  G  L  F  I  N  F  I  H  F  L  D  F  G  L  V  F  L  F  I  L  *  P  *  L  L  V  G  L  C  S  M  T  M  S  F  V  I  N  K  M  E  I  I  V  I  I  L  G  I  L  V  V  A  M  I  K  *  R  G  V  I  I  V  K  K  N  G  R  S  F  G  K  K  F  E  L  L  R  K  F  Q  Y  I  S  R  I  R  D  R  T  E  S  L  R  F  I  V  R  N  F  I  Y  K  Y  L  C  Y  *  E  V  T  R  R  V  C  L  Y  T  S  T  N  L  N  V  M  C  *  I  S  P  K </second_frame>
            <third_frame>   T  Q  K  N  N  K  T  P  L  N  V  Y  T  N  *  L  *  K  K  N  S  N  Y  I  H  D  K  L  Y  I  I  H  I  T  M  C  S  N  L  I  D  H  I  Q  F  Y  C  Y  N  I  S  S  I  F  *  Q  S  I  F  V  L  S  F  H  L  F  H  I  F  *  C  L  L  G  K  *  L  I  I  Y  I  S  K  H  S  I  E  K  *  V  F  *  E  E  L  V  G  I  C  Y  M  V  L  V  F  F  H  Y  F  W  V  C  L  S  I  L  S  I  F  W  I  L  G  W  S  S  Y  S  Y  C  S  H  N  Y  *  W  G  C  V  L  *  L  C  H  L  *  *  T  R  W  R  *  *  S  *  F  *  V  F  W  *  *  Q  *  S  N  E  E  G  L  L  L  *  R  K  M  G  G  H  L  G  K  S  L  S  Y  *  G  N  F  S  T  F  H  G  F  E  I  G  L  N  H  *  D  L  L  Y  V  I  L  S  T  N  I  C  V  I  R  K  *  Q  G  V  F  V  C  T  L  V  P  I  S  M  L  C  V  K  F  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22717" stop="23271"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THKKIIKPHLMYTQTSCKRRTPTISMTNSTSFTLQCVQTLLIIFNFIATIYRAYSNSQYSFLAFIFFIYFSAYLANNLSSTYRNIQSKNKSFEKSLLGFAIWFLYSSIIFGFVYQFYPFFGFWAGLPIHIVAIIISGVVFYDYVICDKQDGDNSHNFRYFGSSNDQMKRGYYCEEKWEVIWEKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23455" PGL_stop="22917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23455" e_stop="22917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="23455" e_stop="22917" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23455" stop="22917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCAAACTGATTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</gDNA_template>
            <first_frame> L  S  Q  T  D  F  W  G  N  L  T  H  N  I  E  I  G  T  S  V  Q  T  N  T  P  C  Y  F  L  I  T  Q  I  F  V  D  K  I  T  Y  N  K  S  *  *  F  S  P  I  S  N  P  *  N  V  L  K  F  P  *  *  L  K  L  F  P  K  *  P  P  I  F  L  H  N  N  N  P  S  S  F  D  H  C  Y  Y  Q  N  T  *  N  Y  D  Y  Y  L  H  L  V  Y  H  K  *  H  S  H  R  T  Q  P  H  *  *  L  W  L  Q  Y  E  *  E  D  Q  P  K  I  Q  K  M  D  K  I  D  K  Q  T  Q  K  *  W  K  N  T  R  T  I  *  Q  I  P  T  S  S  S  Q  K  T  Y  F  S  I  E  C  F  D  M  *  M  I  S  Y  L  P  S  K  H  *  N  I   </first_frame>
            <second_frame>  F  L  K  L  I  F  G  E  I  *  H  I  T  L  R  L  V  L  V  Y  K  Q  T  R  L  V  T  S  *  *  H  K  Y  L  *  I  K  L  R  T  I  N  L  S  D  S  V  L  S  R  I  R  E  M  Y  *  N  F  L  S  N  S  N  F  F  P  N  D  L  P  F  F  F  T  I  I  T  P  L  H  L  I  I  A  T  T  K  I  P  K  I  M  T  I  I  S  I  L  F  I  T  N  D  I  V  I  E  H  N  P  T  N  N  Y  G  Y  N  M  N  R  K  T  S  P  K  S  K  K  W  I  K  L  I  N  K  P  K  N  N  G  R  I  Q  E  P  Y  S  K  S  Q  Q  A  L  L  K  R  L  I  F  R  L  N  V  S  I  C  R  *  *  V  I  C  Q  V  S  T  K  I  Y  </second_frame>
            <third_frame>   F  S  N  *  F  L  G  K  F  N  T  *  H  *  D  W  Y  *  C  T  N  K  H  A  L  L  L  P  N  N  T  N  I  C  R  *  N  Y  V  Q  *  I  L  V  I  Q  S  Y  L  E  S  V  K  C  T  E  I  S  L  V  T  Q  T  F  S  Q  M  T  S  H  F  S  S  Q  *  *  P  L  F  I  *  S  L  L  L  P  K  Y  L  K  L  *  L  L  S  P  S  C  L  S  Q  M  T  *  S  *  N  T  T  P  L  I  I  M  A  T  I  *  I  G  R  P  A  Q  N  P  K  N  G  *  N  *  *  T  N  P  K  I  M  E  E  Y  K  N  H  I  A  N  P  N  K  L  F  S  K  D  L  F  F  D  *  M  F  R  Y  V  D  D  K  L  F  A  K  *  A  L  K  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23286" stop="22951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLSNSNFFPNDLPFFFTIITPLHLIIATTKIPKIMTIISILFITNDIVIEHNPTNNYGYNMNRKTSPKSKKWIKLINKPKNNGRIQEPYSKSQQALLKRLIFRLNVSICR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26876" PGL_stop="30038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26916" e_stop="27180"/>
            <exon e_start="28051" e_stop="28371"/>
            <exon e_start="28797" e_stop="28930"/>
            <exon e_start="29288" e_stop="29460"/>
            <exon e_start="29651" e_stop="30038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26916" e_stop="27180" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27181" i_stop="28050" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28051" e_stop="28371" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.913">
            <gDNA_intron_boundary i_start="28372" i_stop="28796" i_length="425"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28797" e_stop="28930" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28931" i_stop="29287" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29288" e_stop="29460" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="29461" i_stop="29650" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="29651" e_stop="30038" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26916" stop="27180"/>
              <exon start="28051" stop="28371"/>
              <exon start="28797" stop="28930"/>
              <exon start="29288" stop="29313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28100" stop="28371"/>
              <exon start="28797" stop="28930"/>
              <exon start="29288" stop="29460"/>
              <exon start="29651" stop="30038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG : TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG : GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG : ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAG : GGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAA</gDNA_template>
            <first_frame> I  R  L  C  H  P  G  V  M  W  V  L  I  W  K  L  S  W  E  *  R  L  L  V  D  L  R  *  F  I  S  *  K  R  G  R  A  W  T  E  K  G  V  H  G  M  R  L  G  *  V  *  S  G  V  G  T  S  K  G  C  Y  Q  D  R  R  S  I  K  D  *  *  R  M  L  R  S  I  T  R  I  V  H  C  M  Q  E  K   : V  L  H  *  V  L  Q  C  E  E  *  M  R  S  L  P  F  L  I  L  L  M  T  L  R  I  R  R  Y  R  H  L  M  M  I  H  G  F  M  V  E  R  M  S  *  I  P  F  F  K  R  G  K  R  R  W  N  F  T  I  Q  K  G  N  R  N  Q  K  S  R  M  G  P  A  I  I  L  I  I  L  I  *  K  I  Y  R  T  L  C  K  H  L  S  Q  K  W  P  V  M  K  V  Q  R  F  Q  R  T   : G  M  *  R  K  W  T  L  M  S  I  T  L  *  K  T  W  N  R  L  *  G  V  R  A  M  K  T  L  A  V  M  L  I  L  K  K  G  H  H  Q  I  W  S  S  :  M  N  L  K  M  R  V  I  L  P  S  H  M  M  I  M  M  R  E  V  L  L  S  C  I  R  I  R  T  L  *  M  M  N  *  K  A  P  H  *  V  I  P  L  S  A  Q  M  E  S  L  S  P  *  R  K  M  R :   E  H  L  L  L  Q  K  T  W  K  R  R  I  S  V  L  *  M  L  I  S  I  L  *  R  I  S  W  I  R  F  L  L  K  M  D  F  Q  D  L  L  L  T  C  L  D  L  W  V  Y  S  Y  H  Q  M  L  A  K  G  N  N  H  I  I  H  K  L  V  S  S  F  F  F  S  L  P  F  S  K  R  Q  S  L  Q  Y  Y  V  L  R  M  F  *  L  Q  T  E  K  K  G  G  G  G  F  M  W  Y  F  S  F  L  T  I  K  *  F  I  Y  *  *  I  M  *  K  I  L  *  V  D  E </first_frame>
            <second_frame>  S  G  F  A  T  Q  E  *  C  G  C  L  Y  G  S  *  A  G  N  E  D  C  L  W  I  *  D  D  L  S  V  E  K  E  A  G  H  G  R  K  R  E  Y  M  G  C  V  *  A  E  S  R  A  E  W  V  L  R  R  A  V  T  R  I  E  G  V  *  K  I  D  E  E  C  *  G  V  L  Q  E  *  F  T  A  C  K  R  K  :  C  Y  T  K  C  S  S  A  K  N  R  *  D  P  C  P  S  *  F  C  *  *  L  *  G  S  G  D  T  A  I  *  *  *  F  M  A  L  W  W  R  G  *  A  K  F  R  S  S  R  E  A  K  G  D  G  T  L  Q  F  K  K  E  T  E  I  K  R  A  G  W  A  Q  Q  S  F  *  *  F  *  S  K  R  Y  I  E  L  Y  A  S  I  C  H  K  S  G  Q  L  *  R  C  R  G  S  R  G  Q  :  E  C  K  G  S  G  L  *  C  R  S  L  Y  E  R  P  G  I  V  Y  E  G  S  G  Q  *  R  H  W  P  *  C  *  Y  *  R  R  V  I  I  R  Y  G  V  R :   *  I  *  R  *  E  *  Y  C  R  A  T  *  *  *  *  *  G  R  C  C  F  H  A  F  V  F  G  H  S  E  *  *  T  E  R  H  H  T  K  *  Y  L  C  P  R  K  W  R  V  *  V  H  K  E  R  *   : G  N  I  Y  C  C  R  K  H  G  R  G  G  F  Q  S  C  R  C  *  F  Q  S  C  K  E  F  P  G  F  V  F  F  S  R  W  T  S  R  T  C  F  *  L  A  W  T  Y  G  S  T  A  T  T  R  C  *  Q  R  E  I  T  I  L  Y  T  N  L  F  P  H  S  S  F  P  C  L  F  L  N  G  N  L  Y  N  T  M  Y  Y  V  C  F  N  F  K  R  R  K  K  E  E  V  D  L  C  G  I  F  H  F  *  P  S  N  N  L  Y  I  D  K  L  C  K  K  Y  Y  K  L  T   </second_frame>
            <third_frame>   P  A  L  P  P  R  S  D  V  G  A  Y  M  E  A  E  L  G  M  K  I  A  C  G  F  E  M  I  Y  Q  L  K  K  R  Q  G  M  D  G  K  G  S  T  W  D  A  F  R  L  S  L  E  R  S  G  Y  F  E  G  L  L  P  G  S  K  E  Y  K  R  L  M  K  N  A  E  E  Y  Y  K  N  S  S  L  H  A  R  E  S :   A  T  L  S  A  P  V  R  R  I  D  E  I  L  A  L  P  D  S  A  D  D  F  K  D  Q  E  I  P  P  S  D  D  D  S  W  L  Y  G  G  E  D  E  L  N  S  V  L  Q  E  R  Q  K  E  M  E  L  Y  N  S  K  R  K  Q  K  S  K  E  Q  D  G  P  S  N  H  S  D  N  F  D  L  K  D  I  S  N  S  M  Q  A  F  V  T  K  V  A  S  Y  E  G  A  E  V  P  E  D  R :   N  V  K  E  V  D  F  D  V  D  H  F  M  K  D  L  E  S  F  M  R  G  Q  G  N  E  D  I  G  R  D  V  D  I  E  E  G  S  S  S  D  M  E  F   : D  E  S  E  D  E  S  D  I  A  E  P  H  D  D  N  D  E  G  G  A  A  F  M  H  S  Y  S  D  T  L  N  D  E  L  K  G  T  T  L  S  N  T  F  V  R  A  N  G  E  S  E  S  I  K  K  D  E  :  G  T  S  T  A  A  E  N  M  E  E  E  D  F  S  P  V  D  V  D  F  N  L  V  K  N  F  L  D  S  F  S  S  Q  D  G  L  P  G  P  A  S  N  L  L  G  L  M  G  L  Q  L  P  P  D  A  S  K  G  K  *  P  Y  Y  T  Q  T  C  F  L  I  L  L  F  L  A  F  F  *  T  A  I  F  T  I  L  C  I  T  Y  V  L  T  S  N  G  E  K  R  R  R  W  I  Y  V  V  F  F  I  F  D  H  Q  I  I  Y  I  L  I  N  Y  V  K  N  I  I  S  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26918" stop="27180"/>
                    <exon start="28051" stop="28371"/>
                    <exon start="28797" stop="28930"/>
                    <exon start="29288" stop="29460"/>
                    <exon start="29651" stop="29833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PALPPRSDVGAYMEAELGMKIACGFEMIYQLKKRQGMDGKGSTWDAFRLSLERSGYFEGLLPGSKEYKRLMKNAEEYYKNSSLHARESATLSAPVRRIDEILALPDSADDFKDQEIPPSDDDSWLYGGEDELNSVLQERQKEMELYNSKRKQKSKEQDGPSNHSDNFDLKDISNSMQAFVTKVASYEGAEVPEDRNVKEVDFDVDHFMKDLESFMRGQGNEDIGRDVDIEEGSSSDMEFDESEDESDIAEPHDDNDEGGAAFMHSYSDTLNDELKGTTLSNTFVRANGESESIKKDEGTSTAAENMEEEDFSPVDVDFNLVKNFLDSFSSQDGLPGPASNLLGLMGLQLPPDASKGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26876" e_stop="27180"/>
            <exon e_start="28051" e_stop="28371"/>
            <exon e_start="28807" e_stop="28930"/>
            <exon e_start="29288" e_stop="29378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26876" e_stop="27180" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27181" i_stop="28050" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28051" e_stop="28371" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28372" i_stop="28806" i_length="435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28807" e_stop="28930" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28931" i_stop="29287" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29288" e_stop="29378" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27180"/>
              <exon start="28051" stop="28371"/>
              <exon start="28807" stop="28930"/>
              <exon start="29288" stop="29378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG : TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG : GAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG : ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</gDNA_template>
            <first_frame> A  Q  L  V  Q  Q  T  F  Q  A  P  K  C  Y  P  A  L  P  P  R  S  D  V  G  A  Y  M  E  A  E  L  G  M  K  I  A  C  G  F  E  M  I  Y  Q  L  K  K  R  Q  G  M  D  G  K  G  S  T  W  D  A  F  R  L  S  L  E  R  S  G  Y  F  E  G  L  L  P  G  S  K  E  Y  K  R  L  M  K  N  A  E  E  Y  Y  K  N  S  S  L  H  A  R  E  S :   A  T  L  S  A  P  V  R  R  I  D  E  I  L  A  L  P  D  S  A  D  D  F  K  D  Q  E  I  P  P  S  D  D  D  S  W  L  Y  G  G  E  D  E  L  N  S  V  L  Q  E  R  Q  K  E  M  E  L  Y  N  S  K  R  K  Q  K  S  K  E  Q  D  G  P  S  N  H  S  D  N  F  D  L  K  D  I  S  N  S  M  Q  A  F  V  T  K  V  A  S  Y  E  G  A  E  V  P  E  D  R :   K  W  T  L  M  S  I  T  L  *  K  T  W  N  R  L  *  G  V  R  A  M  K  T  L  A  V  M  L  I  L  K  K  G  H  H  Q  I  W  S  S  :  M  N  L  K  M  R  V  I  L  P  S  H  M  M  I  M  M  R  E  V  L  L  S  C  I  R  I  R  T  L  </first_frame>
            <second_frame>  H  S  W  C  S  R  H  F  R  R  R  N  V  I  R  L  C  H  P  G  V  M  W  V  L  I  W  K  L  S  W  E  *  R  L  L  V  D  L  R  *  F  I  S  *  K  R  G  R  A  W  T  E  K  G  V  H  G  M  R  L  G  *  V  *  S  G  V  G  T  S  K  G  C  Y  Q  D  R  R  S  I  K  D  *  *  R  M  L  R  S  I  T  R  I  V  H  C  M  Q  E  K   : V  L  H  *  V  L  Q  C  E  E  *  M  R  S  L  P  F  L  I  L  L  M  T  L  R  I  R  R  Y  R  H  L  M  M  I  H  G  F  M  V  E  R  M  S  *  I  P  F  F  K  R  G  K  R  R  W  N  F  T  I  Q  K  G  N  R  N  Q  K  S  R  M  G  P  A  I  I  L  I  I  L  I  *  K  I  Y  R  T  L  C  K  H  L  S  Q  K  W  P  V  M  K  V  Q  R  F  Q  R  T   : G  S  G  L  *  C  R  S  L  Y  E  R  P  G  I  V  Y  E  G  S  G  Q  *  R  H  W  P  *  C  *  Y  *  R  R  V  I  I  R  Y  G  V  R :   *  I  *  R  *  E  *  Y  C  R  A  T  *  *  *  *  *  G  R  C  C  F  H  A  F  V  F  G  H  S </second_frame>
            <third_frame>   T  V  G  A  A  D  I  S  G  A  E  M  L  S  G  F  A  T  Q  E  *  C  G  C  L  Y  G  S  *  A  G  N  E  D  C  L  W  I  *  D  D  L  S  V  E  K  E  A  G  H  G  R  K  R  E  Y  M  G  C  V  *  A  E  S  R  A  E  W  V  L  R  R  A  V  T  R  I  E  G  V  *  K  I  D  E  E  C  *  G  V  L  Q  E  *  F  T  A  C  K  R  K  :  C  Y  T  K  C  S  S  A  K  N  R  *  D  P  C  P  S  *  F  C  *  *  L  *  G  S  G  D  T  A  I  *  *  *  F  M  A  L  W  W  R  G  *  A  K  F  R  S  S  R  E  A  K  G  D  G  T  L  Q  F  K  K  E  T  E  I  K  R  A  G  W  A  Q  Q  S  F  *  *  F  *  S  K  R  Y  I  E  L  Y  A  S  I  C  H  K  S  G  Q  L  *  R  C  R  G  S  R  G  Q  :  E  V  D  F  D  V  D  H  F  M  K  D  L  E  S  F  M  R  G  Q  G  N  E  D  I  G  R  D  V  D  I  E  E  G  S  S  S  D  M  E  F   : D  E  S  E  D  E  S  D  I  A  E  P  H  D  D  N  D  E  G  G  A  A  F  M  H  S  Y  S  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26876" stop="27180"/>
                    <exon start="28051" stop="28371"/>
                    <exon start="28807" stop="28837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQLVQQTFQAPKCYPALPPRSDVGAYMEAELGMKIACGFEMIYQLKKRQGMDGKGSTWDAFRLSLERSGYFEGLLPGSKEYKRLMKNAEEYYKNSSLHARESATLSAPVRRIDEILALPDSADDFKDQEIPPSDDDSWLYGGEDELNSVLQERQKEMELYNSKRKQKSKEQDGPSNHSDNFDLKDISNSMQAFVTKVASYEGAEVPEDRKWTLMSITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30670" PGL_stop="32870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30670" e_stop="30824"/>
            <exon e_start="31718" e_stop="31901"/>
            <exon e_start="31982" e_stop="32115"/>
            <exon e_start="32204" e_stop="32389"/>
            <exon e_start="32526" e_stop="32870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30670" e_stop="30824" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30825" i_stop="31717" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31718" e_stop="31901" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31902" i_stop="31981" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31982" e_stop="32115" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.852">
            <gDNA_intron_boundary i_start="32116" i_stop="32203" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32204" e_stop="32389" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32390" i_stop="32525" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="32526" e_stop="32870" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30670" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32115"/>
              <exon start="32204" stop="32389"/>
              <exon start="32526" stop="32870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30670" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30672" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32115"/>
              <exon start="32204" stop="32305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30672" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30674" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32115"/>
              <exon start="32204" stop="32235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30676" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32115"/>
              <exon start="32204" stop="32389"/>
              <exon start="32526" stop="32690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30677" stop="30824"/>
              <exon start="31718" stop="31901"/>
              <exon start="31982" stop="32115"/>
              <exon start="32204" stop="32389"/>
              <exon start="32526" stop="32759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG : GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG : CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT : ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG : GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTCAGTTGGCTGTGCAGCTAACTTCTCTTGTTCCAAAACTACTAATACTTCTACCATATTGTAATAAACTATCACGTTTTGGATGCCAAATAAATTTGTCTATAGACAACTTTG</gDNA_template>
            <first_frame> W  E  Q  W  G  K  R  L  R  L  T  Y  *  R  V  R  F  R  R  R  K  M  N  R  C  F  S  P  A  M  L  T  P  V  S  Y  S  S  T  S  L  M  A  S  A  P  S  E  L  A  I  W :   L  R  *  H  Q  I  D  K  F  Q  Q  W  L  M  S  Q  L  N  L  Q  K  C  S  V  R  R  N  G  L  F  M  H  F  V  I  R  I  I  L  M  C  L  S  H  L  I  L  L  I  V  S  L  E  Q  M  N  L  S  W  F  L  :  H  C  S  G  W  R  M  N  L  M  *  Q  C  D  A  R  I  V  L  M  V  S  L  A  R  L  R  K  M  D  L  M  S  L  *  I  G  *  K  L  M  R  L  K  L :   Y  W  L  *  G  Y  A  R  T  Y  A  C  L  I  L  C  V  L  S  Y  L  H  E  T  V  D  F  S  P  H  *  K  T  *  L  Y  I  P  L  A  A  L  P  M  I  F  Q  S  R  L  P  E  I  *  K  E  L  Y  L  I  H  R :   N  S  C  I  T  *  A  F  T  W  P  K  E  E  E  Q  K  *  F  H  I  S  H  L  T  R  Q  P  T  R  H  N  F  E  Q  *  D  *  D  P  Y  F  S  F  E  T  L  K  D  T  A  T  A  I  A  D  T  A  *  Y  I  L  S  Y  S  S  K  I  N  M  P  I  C  I  F  S  C  S  V  G  C  A  A  N  F  S  C  S  K  T  T  N  T  S  T  I  L  *  *  T  I  T  F  W  M  P  N  K  F  V  Y  R  Q  L   </first_frame>
            <second_frame>  G  N  S  G  A  R  G  C  D  *  L  T  E  E  *  D  S  G  G  G  R  *  T  A  A  S  H  R  R  C  *  H  R  S  R  T  R  R  H  R  *  W  L  L  H  R  R  S  W  Q  F   : G  S  G  D  T  K  *  T  N  F  S  N  G  *  *  V  S  *  T  C  K  S  V  L  *  E  E  M  A  Y  L  C  T  S  *  F  A  S  S  *  C  A  *  A  T  *  S  S  S  L  Y  R  W  N  R  *  I  *  V  G  S  C :   T  A  V  V  G  E  *  T  *  C  D  S  A  M  Q  G  L  Y  *  W  F  P  W  L  D  *  E  R  W  I  *  C  L  C  K  L  G  E  S  *  *  D  *  N   : Y  I  G  C  R  D  M  H  G  H  M  R  A  *  F  C  V  F  C  L  I  C  T  K  P  W  I  S  L  P  T  E  R  R  D  C  I  F  P  W  L  R  Y  L  *  S  S  S  P  D  C  Q  K  Y  K  R  S  F  T  S  S  T   : G  I  H  A  S  H  R  P  L  H  G  Q  R  K  R  S  K  S  S  F  T  Y  L  I  *  H  D  N  Q  R  D  I  T  L  N  N  E  I  K  I  H  I  S  H  S  K  L  *  R  T  L  L  Q  L  L  Q  T  L  L  S  I  Y  *  V  I  V  V  R  *  I  C  P  Y  A  S  S  L  V  Q  L  A  V  Q  L  T  S  L  V  P  K  L  L  I  L  L  P  Y  C  N  K  L  S  R  F  G  C  Q  I  N  L  S  I  D  N  F  </second_frame>
            <third_frame>   G  T  V  G  Q  E  A  A  I  D  L  L  K  S  E  I  P  A  E  E  D  E  P  L  L  L  T  G  D  V  N  T  G  L  V  L  V  D  I  V  N  G  F  C  T  V  G  A  G  N  L  :  A  P  V  T  P  N  R  Q  I  S  A  M  V  D  E  S  V  K  L  A  K  V  F  C  E  K  K  W  P  I  Y  A  L  R  D  S  H  H  P  D  V  P  E  P  P  N  P  P  H  C  I  A  G  T  D  E  S  E  L  V  P   : A  L  Q  W  L  E  N  E  P  N  V  T  V  R  C  K  D  C  I  D  G  F  L  G  S  I  E  K  D  G  S  N  V  F  V  N  W  V  K  A  N  E  I  K  I  :  I  L  V  V  G  I  C  T  D  I  C  V  L  D  F  V  C  S  V  L  S  A  R  N  R  G  F  L  S  P  L  K  D  V  I  V  Y  S  P  G  C  A  T  Y  D  L  P  V  Q  I  A  R  N  I  K  G  A  L  P  H  P  Q  :  E  F  M  H  H  I  G  L  Y  M  A  K  G  R  G  A  K  V  V  S  H  I  S  F  D  T  T  T  N  E  T  *  L  *  T  M  R  L  R  S  I  F  L  I  R  N  S  E  G  H  C  Y  S  Y  C  R  H  C  L  V  Y  I  K  L  *  *  *  D  K  Y  A  H  M  H  L  L  L  F  S  W  L  C  S  *  L  L  L  F  Q  N  Y  *  Y  F  Y  H  I  V  I  N  Y  H  V  L  D  A  K  *  I  C  L  *  T  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30672" stop="30824"/>
                    <exon start="31718" stop="31901"/>
                    <exon start="31982" stop="32115"/>
                    <exon start="32204" stop="32389"/>
                    <exon start="32526" stop="32621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGQEAAIDLLKSEIPAEEDEPLLLTGDVNTGLVLVDIVNGFCTVGAGNLAPVTPNRQISAMVDESVKLAKVFCEKKWPIYALRDSHHPDVPEPPNPPHCIAGTDESELVPALQWLENEPNVTVRCKDCIDGFLGSIEKDGSNVFVNWVKANEIKIILVVGICTDICVLDFVCSVLSARNRGFLSPLKDVIVYSPGCATYDLPVQIARNIKGALPHPQEFMHHIGLYMAKGRGAKVVSHISFDTTTNET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46257" PGL_stop="42633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46257" e_stop="45091"/>
            <exon e_start="43648" e_stop="43164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="46257" e_stop="45091" e_length="1167"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="45090" i_stop="43649" i_length="1442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43648" e_stop="43164" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46257" stop="45550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46249" stop="45091"/>
              <exon start="43648" stop="43164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46248" stop="45770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46200" stop="45753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46188" stop="45530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46055" stop="45365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45444" stop="45091"/>
              <exon start="43648" stop="43168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43629" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221211" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43474" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221317" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACATTCTGTGTGTTTGTGCCATTGTTATCCTTTGAAATACCAATCGTGTG : AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</gDNA_template>
            <first_frame> C  V  L  L  L  G  G  W  G  E  D  E  R  R  E  F  *  *  E  R  E  K  G  F  T  A  G  G  G  K  W  I  C  R  *  T  V  L  F  F  S  G  D  I  T  V  L  I  S  L  S  G  E  D  L  R  I  F  R  W  *  H  R  L  I  Y  I  H  T  S  A  E  S  L  S  F  F  F  T  E  K  Q  I  R  V  W  V  *  P  D  W  R  N  G  F  W  C  F  N  S  N  F  A  L  I  N  H  E  F  E  M  K  N  L  I  *  I  L  W  I  Y  H  I  V  R  P  F  *  T  V  *  C  F  L  G  F  L  V  E  F  *  C  *  E  M  V  G  F  *  F  L  K  L  F  L  K  R  G  C  F  F  M  I  K  L  L  K  A  V  C  F  F  A  L  L  I  E  K  V  C  L  *  P  S  I  *  Y  F  V  L  V  M  D  *  A  F  V  E  F  L  F  W  G  L  D  L  S  S  *  L  C  F  R  A  *  S  L  I  F  F  C  *  V  *  S  F  V  E  S  L  L  D  E  M  A  V  S  L  T  R  L  S  W  W  W  W  G  G  K  E  K  E  P  V  S  N  G  S  S  M  N  P  L  Q  D  F  G  F  G  L  K  E  Q  S  D  S  L  K  F  K  S  V  R  G  A  N  L  A  S  T  T  R  K  V  K  R  K  W  K  S  R  E  E  R  K  R  V  D  E  K  Y  D  V  V  L  V  P  S  D  G  V  C  L  S  G  S  E  S  D  D  S  D  W  S  I  G  W  L  E  P  H  A  P  D  F  Q  N  D  D  E  G  D  D  S  F  A  V  L  V  P  C  Y  R  H  D  C  R  E  I  G  E  P  N  I  L  C  V  C  A  I  V  I  L  *  N  T  N  R  V  :  R  V  R  S  I  W  S  N  G  S  L  L  F  R  I  F  E  Y  T  A  A  G  R  Y  L  R  I  R  N  F  L  K  Q  G  L  S  F  S  I  *  G  D  M  L  V  L  H  Q  Y  R  K  V  V  A  A  G  Q  H  F  H  L  R  E  T  N  N  Q  V  F  R  G  S  D  L  W  F  R  A  Q  I  H  K  S  M  S  S  L  N  F  R  T  D  Q  L  L  L  L  W  G  K  L  D  I  S  S  *  F  F  S  V  N  I  A  N  V  N  M  G  E  V  V  C  F  L  T  A  A  I  V  N  K  S  S  V  F  Q  Y  P  D  K  *  K  H  H  C  L  Y  L  *  S  Y  I  N  V  K  Y  Y  V  L  M  N   </first_frame>
            <second_frame>  V  C  Y  F  W  G  G  G  V  K  T  K  E  G  S  F  S  E  R  E  K  K  G  S  P  P  V  A  E  N  G  Y  A  G  E  Q  F  C  F  F  P  V  I  L  P  C  *  S  H  F  P  A  R  I  *  E  F  S  G  G  D  T  V  *  Y  I  Y  T  H  L  P  K  A  Y  P  F  S  L  L  R  N  K  F  G  S  G  F  D  P  I  G  E  M  V  F  G  V  L  I  P  I  L  P  S  S  I  T  S  L  R  *  K  T  *  F  K  F  C  G  F  I  I  L  L  D  P  F  E  L  F  D  V  F  W  D  F  *  L  N  F  S  A  R  R  W  W  G  F  N  F  *  S  F  S  *  K  G  V  V  F  L  *  L  N  C  *  K  L  F  A  F  L  L  F  *  *  K  K  F  V  F  S  L  P  S  D  I  L  F  *  *  W  I  K  H  L  L  N  F  C  S  G  A  W  I  *  V  L  D  C  V  S  E  L  K  V  *  F  F  F  A  K  F  D  H  L  *  N  P  F  W  M  K  W  Q  F  L  *  L  V  C  H  G  G  G  G  V  G  K  R  R  N  Q  C  L  M  D  L  Q  *  I  P  C  K  I  L  D  L  D  *  R  N  K  V  I  V  *  S  L  S  Q  *  G  G  L  I  *  L  Q  L  L  G  K  *  R  G  N  G  R  V  E  R  R  G  R  G  L  M  R  N  M  M  W  Y  W  C  H  L  M  V  F  V  Y  Q  V  P  N  P  M  T  L  T  G  R  S  G  G  W  N  H  M  P  L  I  S  R  M  M  M  R  E  M  T  V  L  L  C  W  F  L  A  T  G  M  I  V  E  R  *  E  S  Q  T  F  C  V  F  V  P  L  L  S  F  E  I  P  I  V  * :   G  *  E  V  Y  G  A  M  A  L  F  S  S  E  F  L  N  I  L  Q  L  V  V  I  Y  A  L  G  I  F  *  S  R  V  Y  L  L  V  F  E  E  I  C  *  F  C  I  N  I  E  K  *  W  Q  Q  V  S  I  F  I  C  E  R  Q  I  I  K  F  F  V  A  V  I  F  G  F  G  L  K  Y  T  N  Q  C  H  L  *  T  L  E  L  I  N  F  C  C  C  G  E  N  L  T  Y  Q  A  D  F  L  V  *  I  *  L  M  *  I  W  E  K  *  Y  A  F  *  L  L  L  L  *  I  N  H  L  S  S  N  I  Q  T  S  E  N  I  I  V  Y  I  F  D  H  T  L  M  L  N  I  M  F  L  *  I  </second_frame>
            <third_frame>   C  V  T  F  G  G  V  G  *  R  R  K  K  G  V  L  V  R  E  R  K  R  V  H  R  R  W  R  K  M  D  M  P  V  N  S  F  V  F  F  R  *  Y  Y  R  A  D  L  T  F  R  R  G  F  E  N  F  P  V  V  T  P  F  D  I  Y  T  H  I  C  R  K  L  I  L  F  L  Y  *  E  T  N  S  G  L  G  L  T  R  L  E  K  W  F  L  V  F  *  F  Q  F  C  P  H  Q  S  R  V  *  D  E  K  L  D  L  N  F  V  D  L  S  Y  C  *  T  L  L  N  C  L  M  F  S  G  I  F  S  *  I  L  V  L  G  D  G  G  V  L  I  F  E  A  F  L  E  K  G  L  F  F  Y  D  *  T  A  E  S  C  L  L  F  C  S  F  D  R  K  S  L  S  L  A  F  H  L  I  F  C  F  S  N  G  L  S  I  C  *  I  F  V  L  G  L  G  F  E  F  L  I  V  F  Q  S  L  K  F  D  F  F  L  L  S  L  I  I  C  R  I  P  F  G  *  N  G  S  F  F  D  S  F  V  M  V  V  V  G  W  E  R  E  G  T  S  V  *  W  I  F  N  E  S  L  A  R  F  W  I  W  I  E  G  T  K  *  *  F  E  V  *  V  S  E  G  G  *  S  S  F  N  Y  *  E  S  E  E  E  M  E  E  *  R  G  E  E  E  G  *  *  E  I  *  C  G  I  G  A  I  *  W  C  L  F  I  R  F  R  I  R  *  L  *  L  V  D  R  V  A  G  T  T  C  P  *  F  P  E  *  *  *  G  R  *  Q  F  C  C  V  G  S  L  L  Q  A  *  L  *  R  D  R  R  A  K  H  S  V  C  L  C  H  C  Y  P  L  K  Y  Q  S  C   : E  G  K  K  Y  M  E  Q  W  L  S  S  L  Q  N  F  *  I  Y  C  S  W  S  L  S  T  H  *  E  F  S  E  A  G  S  I  F  *  Y  L  R  R  Y  A  S  S  A  S  I  S  K  S  S  G  S  R  S  A  F  S  F  A  R  D  K  *  S  S  F  S  W  Q  *  S  L  V  S  G  S  N  T  Q  I  N  V  I  F  K  L  *  N  *  S  T  S  V  V  V  G  K  T  *  H  I  K  L  I  F  *  C  K  Y  S  *  C  E  Y  G  R  S  S  M  L  F  N  C  C  Y  C  K  *  I  I  C  L  P  I  S  R  Q  V  K  T  S  L  F  I  S  L  I  I  H  *  C  *  I  L  C  S  Y  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45585" stop="45106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFVESLLDEMAVSLTRLSWWWWGGKEKEPVSNGSSMNPLQDFGFGLKEQSDSLKFKSVRGANLASTTRKVKRKWKSREERKRVDEKYDVVLVPSDGVCLSGSESDDSDWSIGWLEPHAPDFQNDDEGDDSFAVLVPCYRHDCREIGEPNILCVCAIVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43528" stop="43331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDMLVLHQYRKVVAAGQHFHLRETNNQVFRGSDLWFRAQIHKSMSSLNFRTDQLLLLWGKLDISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43629" e_stop="43172"/>
            <exon e_start="42653" e_stop="42633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.538" e_score="0.986"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="43629" e_stop="43172" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.538">
            <gDNA_intron_boundary i_start="43171" i_stop="42654" i_length="518"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="42653" e_stop="42633" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43629" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221211" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43474" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43408" stop="43172"/>
              <exon start="42653" stop="42633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238752" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTT : GTTGAAAAGTGAAAAAAAAAA</gDNA_template>
            <first_frame> A  M  A  L  F  S  S  E  F  L  N  I  L  Q  L  V  V  I  Y  A  L  G  I  F  *  S  R  V  Y  L  L  V  F  E  E  I  C  *  F  C  I  N  I  E  K  *  W  Q  Q  V  S  I  F  I  C  E  R  Q  I  I  K  F  F  V  A  V  I  F  G  F  G  L  K  Y  T  N  Q  C  H  L  *  T  L  E  L  I  N  F  C  C  C  G  E  N  L  T  Y  Q  A  D  F  L  V  *  I  *  L  M  *  I  W  E  K  *  Y  A  F  *  L  L  L  L  *  I  N  H  L  S  S  N  I  Q  T  S  E  N  I  I  V  Y  I  F  D  H  T  L  M  L  N  I  M  F  L :   L  K  S  E  K  K   </first_frame>
            <second_frame>  Q  W  L  S  S  L  Q  N  F  *  I  Y  C  S  W  S  L  S  T  H  *  E  F  S  E  A  G  S  I  F  *  Y  L  R  R  Y  A  S  S  A  S  I  S  K  S  S  G  S  R  S  A  F  S  F  A  R  D  K  *  S  S  F  S  W  Q  *  S  L  V  S  G  S  N  T  Q  I  N  V  I  F  K  L  *  N  *  S  T  S  V  V  V  G  K  T  *  H  I  K  L  I  F  *  C  K  Y  S  *  C  E  Y  G  R  S  S  M  L  F  N  C  C  Y  C  K  *  I  I  C  L  P  I  S  R  Q  V  K  T  S  L  F  I  S  L  I  I  H  *  C  *  I  L  C  S   : C  *  K  V  K  K  K  </second_frame>
            <third_frame>   N  G  S  L  L  F  R  I  F  E  Y  T  A  A  G  R  Y  L  R  I  R  N  F  L  K  Q  G  L  S  F  S  I  *  G  D  M  L  V  L  H  Q  Y  R  K  V  V  A  A  G  Q  H  F  H  L  R  E  T  N  N  Q  V  F  R  G  S  D  L  W  F  R  A  Q  I  H  K  S  M  S  S  L  N  F  R  T  D  Q  L  L  L  L  W  G  K  L  D  I  S  S  *  F  F  S  V  N  I  A  N  V  N  M  G  E  V  V  C  F  L  T  A  A  I  V  N  K  S  S  V  F  Q  Y  P  D  K  *  K  H  H  C  L  Y  L  *  S  Y  I  N  V  K  Y  Y  V  L  :  V  E  K  *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43528" stop="43331"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDMLVLHQYRKVVAAGQHFHLRETNNQVFRGSDLWFRAQIHKSMSSLNFRTDQLLLLWGKLDISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60030" PGL_stop="62104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60030" e_stop="60109"/>
            <exon e_start="60417" e_stop="60648"/>
            <exon e_start="61029" e_stop="61088"/>
            <exon e_start="61466" e_stop="61620"/>
            <exon e_start="62070" e_stop="62104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.966" acc_prob="0.993" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="60030" e_stop="60109" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60110" i_stop="60416" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60417" e_stop="60648" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="60649" i_stop="61028" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="61029" e_stop="61088" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61089" i_stop="61465" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="61466" e_stop="61620" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61621" i_stop="62069" i_length="449"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62070" e_stop="62104" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60030" stop="60109"/>
              <exon start="60417" stop="60648"/>
              <exon start="61029" stop="61088"/>
              <exon start="61466" stop="61620"/>
              <exon start="62070" stop="62104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAG : GTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAG : AACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCA : CGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG : ATCATACAATAGCTTACAAGGAAGCCCACATCTGC</gDNA_template>
            <first_frame> F  T  L  F  V  Q  T  I  T  H  T  M  S  F  *  R  F  L  P  F  S  V  F  R  *  T  R :   F  F  S  R  E  V  E  V  E  G  G  I  I  T  I  L  V  F  V  I  R  K  T  F  D  Q  C  G  V  V  *  L  S  Y  A  A  S  D  S  W  L  F  A  *  L  C  P  I  M  V  A  A  G  S  L  Q  L  S  H  Y  W  G  T  C  K  N  H  E  R  L  K  K  Y  S  P  I  Q  :  N  T  L  G  R  N  R  W  R  S  C  C  T  N  L  S  S  F  S  S  :  R  Q  D  S  W  S  I  H  H  S  R  G  L  Q  V  K  K  H  V  L  P  Y  R  S  N  L  L  K  C  N  S  F  L  K  P  D  Q  A  F  D  I  S  V  K  N  A  A  I  I  L  K  R :   S  Y  N  S  L  Q  G  S  P  H  L  </first_frame>
            <second_frame>  L  P  C  S  C  K  P  S  H  I  R  C  R  F  E  G  F  F  L  S  L  Y  S  V  R  Q   : G  F  F  Q  E  K  *  R  L  R  G  E  S  S  L  S  L  F  L  *  L  G  R  L  L  I  N  V  E  *  F  N  Y  L  M  L  L  V  I  V  G  C  L  L  S  F  V  Q  *  W  L  L  L  V  L  C  S  C  P  I  I  G  G  L  A  R  T  M  S  A  L  R  N  I  R  L  Y  R :   T  H  L  E  G  T  G  G  V  L  V  A  R  I  C  H  L  F  H  H :   G  R  T  L  G  A  S  I  T  Q  E  D  C  K  *  R  N  M  C  S  H  I  E  A  I  C  *  S  V  I  L  S  *  N  L  T  K  L  L  T  F  L  *  R  M  L  L  L  Y  *  K   : D  H  T  I  A  Y  K  E  A  H  I  C </second_frame>
            <third_frame>   Y  L  V  R  A  N  H  H  T  Y  D  V  V  L  K  V  S  S  F  L  C  I  P  L  D  K  :  V  F  F  K  R  S  R  G  *  G  G  N  H  H  Y  P  C  F  C  N  *  E  D  F  *  S  M  W  S  S  L  I  I  L  C  C  *  *  *  L  V  V  C  L  A  L  S  N  N  G  C  C  W  F  F  A  V  V  P  L  L  G  D  L  Q  E  P  *  A  P  *  E  I  F  A  Y  T   : E  H  T  W  K  E  Q  V  A  F  L  L  H  E  S  V  I  F  F  I   : T  A  G  L  L  E  H  P  S  L  K  R  I  A  S  E  E  T  C  A  P  I  *  K  Q  F  V  E  V  *  F  F  P  K  T  *  P  S  F  *  H  F  C  K  E  C  C  Y  Y  T  E  K  :  I  I  Q  *  L  T  R  K  P  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60550" stop="60648"/>
                    <exon start="61029" stop="61088"/>
                    <exon start="61466" stop="61620"/>
                    <exon start="62070" stop="62103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCPIMVAAGSLQLSHYWGTCKNHERLKKYSPIQNTLGRNRWRSCCTNLSSFSSRQDSWSIHHSRGLQVKKHVLPYRSNLLKCNSFLKPDQAFDISVKNAAIILKRSYNSLQGSPHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64705" PGL_stop="67765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64705" e_stop="64725"/>
            <exon e_start="64814" e_stop="64927"/>
            <exon e_start="65826" e_stop="65882"/>
            <exon e_start="66647" e_stop="67765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.217" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.686" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64705" e_stop="64725" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.217" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64726" i_stop="64813" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64814" e_stop="64927" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.686" acc_prob="0.936">
            <gDNA_intron_boundary i_start="64928" i_stop="65825" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65826" e_stop="65882" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.627" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65883" i_stop="66646" i_length="764"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="66647" e_stop="67765" e_length="1119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64705" stop="64725"/>
              <exon start="64814" stop="64927"/>
              <exon start="65826" stop="65882"/>
              <exon start="66647" stop="66831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66647" stop="67521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66647" stop="67501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66647" stop="67475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66727" stop="67419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66728" stop="67158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="67765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67217" stop="67723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGATGTCAGTAAGATAAAT : AATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTG : ATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAG : GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTAGCCTATCACTCTAGTATAAAATTGGTCAACTTATAG</gDNA_template>
            <first_frame> L  D  V  S  K  I  N  :  N  I  V  A  D  M  R  K  V  L  A  K  N  P  Q  V  E  Q  Q  R  L  H  R  R  V  F  L  E  N  V  N  P  E  N  Q  A  L  L  :  I  L  I  S  C  F  V  K  T  S  H  F  E  E  Y  L  C  V  K  :  E  A  I  L  L  D  L  L  R  V  I  R  H  H  R  A  R  L  A  T  P  I  R  T  V  Q  K  I  Y  S  D  A  D  L  D  N  M  T  Y  D  S  A  F  S  R  G  A  A  S  T  R  P  L  L  L  I  E  P  S  Y  K  V  N  G  E  D  R  T  K  G  R  P  I  R  V  N  G  E  E  D  T  K  E  K  A  T  M  K  P  A  P  D  S  K  V  E  T  K  S  R  P  A  S  D  P  K  I  K  E  T  L  P  A  N  S  N  G  K  D  V  P  L  S  D  L  K  L  D  P  K  V  D  K  M  A  H  A  E  S  K  D  D  I  K  A  S  S  D  P  K  S  S  K  A  T  V  K  N  T  S  Q  P  V  P  K  A  E  L  K  S  A  E  V  G  T  S  D  S  K  D  P  P  E  N  I  S  S  N  K  Q  V  E  K  V  S  Q  G  I  G  R  T  T  N  V  V  D  N  S  A  T  S  P  S  D  V  R  E  K  T  G  N  V  P  S  T  S  L  P  K  R  E  D  E  K  Q  Q  V  S  Q  P  S  V  P  S  K  P  A  L  E  E  N  I  V  L  G  V  A  L  E  G  S  K  R  T  L  P  I  E  E  E  L  S  P  P  P  N  P  A  E  S  K  E  M  A  T  S  R  S  S  S  N  A  S  T  I  A  E  K  D  K  Q  D  G  Q  R  S  N  R  P  N  S  T  A  P  D  Q  S  S  K  D  N  *  S  T  Y  V  F  T  N  S  S  C  D  T  N  S  L  S  T  P  D  L  M  L  H  G  P  L  K  R  V  V  L  I  S  R  I  V  K  Y  L  A  Y  H  S  S  I  K  L  V  N  L  * </first_frame>
            <second_frame>  W  M  S  V  R  *  I :   I  L  *  L  T  C  A  K  F  W  Q  R  I  P  K  L  S  N  R  G  Y  I  E  E  C  S  W  R  M  S  T  L  K  I  K  L  C  * :   S  *  Y  P  A  L  S  R  H  H  T  S  R  N  T  C  V  S  R :   K  Q  F  C  *  I  F  S  E  S  F  D  I  T  E  L  G  L  L  L  P  S  V  Q  F  R  K  Y  I  V  M  L  T  W  T  T  *  H  M  I  L  P  S  V  V  E  Q  H  Q  L  V  R  C  Y  *  L  S  H  L  I  K  S  M  G  K  I  A  Q  K  V  D  Q  F  A  *  M  V  K  K  I  P  R  K  R  L  P  *  N  R  H  L  T  A  R  L  K  P  R  A  D  L  H  L  I  L  K  S  K  K  H  F  Q  L  T  L  M  V  R  M  C  H  F  L  T  *  N  L  I  P  K  L  T  K  W  H  M  L  N  P  K  M  T  L  K  H  R  L  I  Q  N  R  V  K  Q  Q  *  K  T  L  H  N  R  S  Q  K  L  S  L  S  L  Q  K  L  V  L  L  I  P  K  I  L  Q  R  T  S  L  A  T  S  K  L  R  R  *  A  R  G  L  V  A  R  Q  M  *  L  I  I  P  Q  L  L  H  Q  M  L  E  R  K  Q  E  M  S  H  L  L  H  Y  L  R  E  K  M  K  N  N  K  S  H  N  H  L  C  H  R  N  L  H  W  K  R  T  L  F  L  V  L  L  S  R  V  Q  K  E  P  F  Q  L  K  K  S  C  L  P  H  Q  I  Q  Q  N  R  R  K  W  L  L  A  V  V  V  V  M  L  L  P  L  Q  R  K  I  N  K  T  G  S  V  Q  T  D  L  I  L  Q  L  P  I  S  R  V  K  T  I  D  P  P  M  F  S  L  T  V  H  V  T  L  I  H  C  Q  H  Q  I  *  C  Y  M  V  H  *  K  E  L  S  *  F  P  G  *  *  S  I  *  P  I  T  L  V  *  N  W  S  T  Y   </second_frame>
            <third_frame>   G  C  Q  *  D  K   : *  Y  C  S  *  H  A  Q  S  F  G  K  E  S  P  S  *  A  T  E  V  T  *  K  S  V  P  G  E  C  Q  P  *  K  S  S  S  V   : D  L  N  I  L  L  C  Q  D  I  T  L  R  G  I  L  V  C  Q   : G  S  N  F  V  R  S  S  Q  S  H  S  T  S  P  S  S  A  C  Y  S  H  P  Y  S  S  E  N  I  *  *  C  *  L  G  Q  H  D  I  *  F  C  L  Q  S  W  S  S  I  N  S  S  V  A  T  D  *  A  I  L  *  S  Q  W  G  R  S  H  K  R  S  T  N  S  R  E  W  *  R  R  Y  Q  G  K  G  Y  H  E  T  G  T  *  Q  Q  G  *  N  Q  E  Q  T  C  I  *  S  *  N  Q  R  N  T  S  S  *  L  *  W  *  G  C  A  T  F  *  L  E  T  *  S  Q  S  *  Q  N  G  T  C  *  I  Q  R  *  H  *  S  I  V  *  S  K  I  E  *  S  N  S  E  K  H  F  T  T  G  P  K  S  *  A  *  V  C  R  S  W  Y  F  *  F  Q  R  S  S  R  E  H  L  *  Q  Q  A  S  *  E  G  K  P  G  D  W  S  H  D  K  C  S  *  *  F  R  N  F  S  I  R  C  *  R  E  N  R  K  C  P  I  Y  F  T  T  *  E  R  R  *  K  T  T  S  L  T  T  I  C  A  I  E  T  C  I  G  R  E  H  C  S  W  C  C  S  R  G  F  K  K  N  P  S  N  *  R  R  A  V  S  P  T  K  S  S  R  I  E  G  N  G  Y  *  P  *  *  *  *  C  F  Y  H  C  R  E  R  *  T  R  R  A  A  F  K  Q  T  *  F  Y  S  S  R  S  V  E  *  R  Q  L  I  H  L  C  F  H  *  Q  F  M  *  H  *  F  I  V  N  T  R  F  D  V  T  W  S  I  E  K  S  C  L  D  F  Q  D  S  E  V  F  S  L  S  L  *  Y  K  I  G  Q  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64705" stop="64725"/>
                    <exon start="64814" stop="64927"/>
                    <exon start="65826" stop="65882"/>
                    <exon start="66647" stop="67612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVIRHHRARLATPIRTVQKIYSDADLDNMTYDSAFSRGAASTRPLLLIEPSYKVNGEDRTKGRPIRVNGEEDTKEKATMKPAPDSKVETKSRPASDPKIKETLPANSNGKDVPLSDLKLDPKVDKMAHAESKDDIKASSDPKSSKATVKNTSQPVPKAELKSAEVGTSDSKDPPENISSNKQVEKVSQGIGRTTNVVDNSATSPSDVREKTGNVPSTSLPKREDEKQQVSQPSVPSKPALEENIVLGVALEGSKRTLPIEEELSPPPNPAESKEMATSRSSSNASTIAEKDKQDGQRSNRPNSTAPDQSSKDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="74372" PGL_stop="66608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74372" e_stop="73808"/>
            <exon e_start="72056" e_stop="71994"/>
            <exon e_start="71891" e_stop="71810"/>
            <exon e_start="71660" e_stop="71590"/>
            <exon e_start="71462" e_stop="71374"/>
            <exon e_start="71294" e_stop="71091"/>
            <exon e_start="70706" e_stop="70436"/>
            <exon e_start="70200" e_stop="69973"/>
            <exon e_start="69858" e_stop="69661"/>
            <exon e_start="68913" e_stop="68344"/>
            <exon e_start="67892" e_stop="67873"/>
            <exon e_start="66631" e_stop="66608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.842" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74372" e_stop="73808" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72056" e_stop="71994" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71810" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71660" e_stop="71590" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71462" e_stop="71374" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71294" e_stop="71091" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70706" e_stop="70436" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69973" e_length="228"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69858" e_stop="69661" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="68913" e_stop="68344" e_length="570"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="68343" i_stop="67893" i_length="451"/>
          </intron>
          <exon e_serial="11" e_score="0.550">
            <gDNA_exon_boundary e_start="67892" e_stop="67873" e_length="20"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67872" i_stop="66632" i_length="1241"/>
          </intron>
          <exon e_serial="12" e_score="0.750">
            <gDNA_exon_boundary e_start="66631" e_stop="66608" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74372" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74173" stop="73814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74145" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74137" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74085" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74073" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74068" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74068" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72043" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72031" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71284" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71240" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71091"/>
              <exon start="70706" stop="70436"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71229" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
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              <exon start="68913" stop="68730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70626" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70610" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70468" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70450" stop="70436"/>
              <exon start="70200" stop="69973"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70121" stop="69973"/>
              <exon start="69858" stop="69661"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69661"/>
              <exon start="68913" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69746" stop="69661"/>
              <exon start="68913" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69661"/>
              <exon start="68913" stop="68344"/>
              <exon start="67892" stop="67873"/>
              <exon start="66631" stop="66608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68839" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68731" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68727" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC : CATGACTGAGAAAAATGACA : AAAAAAAGAAAAAGTCAAAACACA</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F   : P  *  L  R  K  M  T  :  K  K  R  K  S  Q  N  T </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  :  H  D  *  E  K  *  Q :   K  K  E  K  V  K  T   </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S :   M  T  E  K  N  D   : K  K  K  K  K  S  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73963" stop="73808"/>
                    <exon start="72056" stop="71994"/>
                    <exon start="71891" stop="71810"/>
                    <exon start="71660" stop="71590"/>
                    <exon start="71462" stop="71374"/>
                    <exon start="71294" stop="71091"/>
                    <exon start="70706" stop="70436"/>
                    <exon start="70200" stop="69973"/>
                    <exon start="69858" stop="69661"/>
                    <exon start="68913" stop="68704"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68598" stop="68395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74178" e_stop="73808"/>
            <exon e_start="72056" e_stop="71994"/>
            <exon e_start="71891" e_stop="71810"/>
            <exon e_start="71657" e_stop="71590"/>
            <exon e_start="71462" e_stop="71374"/>
            <exon e_start="71294" e_stop="71091"/>
            <exon e_start="70706" e_stop="70436"/>
            <exon e_start="70200" e_stop="69973"/>
            <exon e_start="69858" e_stop="69661"/>
            <exon e_start="68913" e_stop="68344"/>
            <exon e_start="67892" e_stop="67873"/>
            <exon e_start="66631" e_stop="66608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.842" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74178" e_stop="73808" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72056" e_stop="71994" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71810" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.807">
            <gDNA_intron_boundary i_start="71809" i_stop="71658" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71657" e_stop="71590" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71462" e_stop="71374" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71294" e_stop="71091" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70706" e_stop="70436" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69973" e_length="228"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69858" e_stop="69661" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="68913" e_stop="68344" e_length="570"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="68343" i_stop="67893" i_length="451"/>
          </intron>
          <exon e_serial="11" e_score="0.550">
            <gDNA_exon_boundary e_start="67892" e_stop="67873" e_length="20"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67872" i_stop="66632" i_length="1241"/>
          </intron>
          <exon e_serial="12" e_score="0.750">
            <gDNA_exon_boundary e_start="66631" e_stop="66608" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71657" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74173" stop="73814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74164" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71657" stop="71590"/>
              <exon start="71462" stop="71453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74137" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74068" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71657" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74004" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71657" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73941" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71657" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71284" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71240" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71229" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70626" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70610" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70468" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70450" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70121" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69661"/>
              <exon start="68913" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69746" stop="69661"/>
              <exon start="68913" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69661"/>
              <exon start="68913" stop="68344"/>
              <exon start="67892" stop="67873"/>
              <exon start="66631" stop="66608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68839" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68731" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68727" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC : CATGACTGAGAAAAATGACA : AAAAAAAGAAAAAGTCAAAACACA</gDNA_template>
            <first_frame> R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S :   M  T  E  K  N  D   : K  K  K  K  K  S  K  H  </first_frame>
            <second_frame>  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F   : P  *  L  R  K  M  T  :  K  K  R  K  S  Q  N  T </second_frame>
            <third_frame>   R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : I  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  :  H  D  *  E  K  *  Q :   K  K  E  K  V  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73963" stop="73808"/>
                    <exon start="72056" stop="71994"/>
                    <exon start="71891" stop="71810"/>
                    <exon start="71657" stop="71590"/>
                    <exon start="71462" stop="71374"/>
                    <exon start="71294" stop="71091"/>
                    <exon start="70706" stop="70436"/>
                    <exon start="70200" stop="69973"/>
                    <exon start="69858" stop="69661"/>
                    <exon start="68913" stop="68704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1566</number_coding_nucleotides>
                  <number_encoded_amino_acids>522</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASIPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68598" stop="68395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74372" e_stop="73808"/>
            <exon e_start="72056" e_stop="71994"/>
            <exon e_start="71891" e_stop="71810"/>
            <exon e_start="71660" e_stop="71590"/>
            <exon e_start="71462" e_stop="71374"/>
            <exon e_start="71294" e_stop="70436"/>
            <exon e_start="70200" e_stop="69973"/>
            <exon e_start="69858" e_stop="69661"/>
            <exon e_start="68913" e_stop="68344"/>
            <exon e_start="67892" e_stop="67873"/>
            <exon e_start="66631" e_stop="66608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.842" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74372" e_stop="73808" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72056" e_stop="71994" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71810" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71660" e_stop="71590" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="71462" e_stop="71374" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71294" e_stop="70436" e_length="859"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69973" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69858" e_stop="69661" e_length="198"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="68913" e_stop="68344" e_length="570"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="68343" i_stop="67893" i_length="451"/>
          </intron>
          <exon e_serial="10" e_score="0.550">
            <gDNA_exon_boundary e_start="67892" e_stop="67873" e_length="20"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67872" i_stop="66632" i_length="1241"/>
          </intron>
          <exon e_serial="11" e_score="0.750">
            <gDNA_exon_boundary e_start="66631" e_stop="66608" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74372" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74178" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74173" stop="73814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74145" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74137" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74085" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74073" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74068" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74068" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71218" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71218" stop="70649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70712" stop="70441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70626" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70610" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70468" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70450" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70121" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69661"/>
              <exon start="68913" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69746" stop="69661"/>
              <exon start="68913" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69661"/>
              <exon start="68913" stop="68344"/>
              <exon start="67892" stop="67873"/>
              <exon start="66631" stop="66608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68839" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68731" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68727" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC : CATGACTGAGAAAAATGACA : AAAAAAAGAAAAAGTCAAAACACA</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  V  S  H  N  I  V  F  F  E  D  F  G  L  V  V  *  *  S  C  K  L  C  S  V  S  Q  P  T  R  M  T  K  Y  M  Y  N  W  *  I  T  G  R  I  *  C  S  K  L  K  G  I  L  Q  K  F  H  C  P  V  F  Y  Y  S  F  *  V  V  C  S  L  K  P  K  I  *  V  R  H  G  L  N  I  M  C  L  I  Y  F  L  I  *  S  Y  F  V  R  S  V  I  S  F  *  R  *  *  F  S  Y  Q  P  F  A  G  I  C  D  I  A  L  Y  I  N  I  L  *  M  D  Q  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F   : P  *  L  R  K  M  T  :  K  K  R  K  S  Q  N  T </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  R  L  V  T  T  L  F  F  L  K  I  L  V  *  L  Y  D  S  H  V  N  C  V  Q  S  L  N  P  P  V  *  Q  S  T  C  I  I  G  K  L  L  A  G  F  S  A  Q  N  L  R  E  F  Y  K  S  S  I  A  Q  Y  F  T  I  H  F  K  L  Y  V  P  L  N  Q  K  F  K  L  G  M  D  *  T  L  C  V  *  F  I  S  *  Y  D  H  I  L  F  V  Q  L  L  A  S  E  G  S  N  S  L  I  S  L  L  L  E  F  V  T  L  L  C  I  L  I  F  Y  E  W  I  S  Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  :  H  D  *  E  K  *  Q :   K  K  E  K  V  K  T   </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R  G  *  S  Q  H  C  F  F  *  R  F  W  S  S  C  M  I  V  M  *  T  V  F  S  L  S  T  H  P  Y  D  K  V  H  V  *  L  V  N  Y  W  Q  D  L  V  L  K  T  *  G  N  S  T  K  V  P  L  P  S  I  L  L  F  I  L  S  C  M  F  P  *  T  K  N  L  S  *  A  W  T  K  H  Y  V  F  D  L  F  L  D  M  I  I  F  C  S  F  S  Y  *  L  L  K  V  V  I  L  L  S  A  F  C  W  N  L  *  H  C  F  V  Y  *  Y  F  M  N  G  S  V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S :   M  T  E  K  N  D   : K  K  K  K  K  S  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70822" stop="70436"/>
                    <exon start="70200" stop="69973"/>
                    <exon start="69858" stop="69661"/>
                    <exon start="68913" stop="68704"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDHILFVQLLASEGSNSLISLLLEFVTLLCILIFYEWISYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73963" stop="73808"/>
                    <exon start="72056" stop="71994"/>
                    <exon start="71891" stop="71810"/>
                    <exon start="71660" stop="71590"/>
                    <exon start="71462" stop="71374"/>
                    <exon start="71294" stop="71051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQRLVTTLFFLKILV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68598" stop="68395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74343" e_stop="74257"/>
            <exon e_start="73938" e_stop="73808"/>
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            <exon e_start="71891" e_stop="71810"/>
            <exon e_start="71660" e_stop="71590"/>
            <exon e_start="71462" e_stop="71374"/>
            <exon e_start="71294" e_stop="71091"/>
            <exon e_start="70706" e_stop="70436"/>
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            <exon e_start="69858" e_stop="69661"/>
            <exon e_start="68913" e_stop="68344"/>
            <exon e_start="67892" e_stop="67873"/>
            <exon e_start="66631" e_stop="66608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.842" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74343" e_stop="74257" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74256" i_stop="73939" i_length="318"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73938" e_stop="73808" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72056" e_stop="71994" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71810" e_length="82"/>
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          <intron i_serial="4" don_prob="0.986" acc_prob="0.984">
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          <exon e_serial="5" e_score="1.000">
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          <intron i_serial="5" don_prob="0.933" acc_prob="0.680">
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          <intron i_serial="6" don_prob="0.970" acc_prob="0.986">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          <intron i_serial="7" don_prob="0.976" acc_prob="0.996">
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          <exon e_serial="8" e_score="1.000">
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          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.900">
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          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69973" e_length="228"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69858" e_stop="69661" e_length="198"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.971">
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          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="68913" e_stop="68344" e_length="570"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.842">
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          </intron>
          <exon e_serial="12" e_score="0.550">
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          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
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          </intron>
          <exon e_serial="13" e_score="0.750">
            <gDNA_exon_boundary e_start="66631" e_stop="66608" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74343" stop="74257"/>
              <exon start="73938" stop="73808"/>
              <exon start="72056" stop="71994"/>
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              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302380" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72043" stop="71994"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332097" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="70706" stop="70652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71374"/>
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              <exon start="69858" stop="69806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71284" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71240" stop="71091"/>
              <exon start="70706" stop="70436"/>
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              <exon start="68913" stop="68891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707898" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="71232" stop="71091"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71229" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71091"/>
              <exon start="70706" stop="70436"/>
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              <exon start="68913" stop="68730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70436"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70626" stop="70436"/>
              <exon start="70200" stop="69973"/>
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              <exon start="68913" stop="68657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70610" stop="70436"/>
              <exon start="70200" stop="69973"/>
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            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
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            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70468" stop="70436"/>
              <exon start="70200" stop="69973"/>
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              <exon start="68913" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70450" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70121" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69661"/>
              <exon start="68913" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69746" stop="69661"/>
              <exon start="68913" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69661"/>
              <exon start="68913" stop="68344"/>
              <exon start="67892" stop="67873"/>
              <exon start="66631" stop="66608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68839" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68731" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68727" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCT : CAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC : CATGACTGAGAAAAATGACA : AAAAAAAGAAAAAGTCAAAACACA</gDNA_template>
            <first_frame> N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  :  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S :   M  T  E  K  N  D   : K  K  K  K  K  S  K  H  </first_frame>
            <second_frame>  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L :   K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F   : P  *  L  R  K  M  T  :  K  K  R  K  S  Q  N  T </second_frame>
            <third_frame>   L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S   : S  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  :  H  D  *  E  K  *  Q :   K  K  E  K  V  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74341" stop="74257"/>
                    <exon start="73938" stop="73808"/>
                    <exon start="72056" stop="71994"/>
                    <exon start="71891" stop="71810"/>
                    <exon start="71660" stop="71590"/>
                    <exon start="71462" stop="71374"/>
                    <exon start="71294" stop="71091"/>
                    <exon start="70706" stop="70436"/>
                    <exon start="70200" stop="69973"/>
                    <exon start="69858" stop="69661"/>
                    <exon start="68913" stop="68704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1629</number_coding_nucleotides>
                  <number_encoded_amino_acids>543</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKTTHPQSIYTSQKLIFVAVKSLQCGSSRRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68598" stop="68395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="74196" e_stop="74161"/>
            <exon e_start="73971" e_stop="73808"/>
            <exon e_start="72056" e_stop="71994"/>
            <exon e_start="71891" e_stop="71810"/>
            <exon e_start="71660" e_stop="71590"/>
            <exon e_start="71462" e_stop="71374"/>
            <exon e_start="71294" e_stop="71091"/>
            <exon e_start="70706" e_stop="70436"/>
            <exon e_start="70200" e_stop="69973"/>
            <exon e_start="69858" e_stop="69661"/>
            <exon e_start="68913" e_stop="68306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74196" e_stop="74161" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74160" i_stop="73972" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73971" e_stop="73808" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73807" i_stop="72057" i_length="1751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72056" e_stop="71994" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71993" i_stop="71892" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71810" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71809" i_stop="71661" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71660" e_stop="71590" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71589" i_stop="71463" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71462" e_stop="71374" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71373" i_stop="71295" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71294" e_stop="71091" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71090" i_stop="70707" i_length="384"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70706" e_stop="70436" e_length="271"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70435" i_stop="70201" i_length="235"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69973" e_length="228"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69972" i_stop="69859" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69858" e_stop="69661" e_length="198"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69660" i_stop="68914" i_length="747"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="68913" e_stop="68306" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74196" stop="74161"/>
              <exon start="73971" stop="73808"/>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72056" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72043" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72031" stop="71994"/>
              <exon start="71891" stop="71810"/>
              <exon start="71660" stop="71590"/>
              <exon start="71462" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71374"/>
              <exon start="71294" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71284" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71242" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71240" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71232" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71229" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="70128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71119" stop="71091"/>
              <exon start="70706" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70682" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70626" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70610" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70468" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70450" stop="70436"/>
              <exon start="70200" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70121" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70021" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69973"/>
              <exon start="69858" stop="69661"/>
              <exon start="68913" stop="68414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69661"/>
              <exon start="68913" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69746" stop="69661"/>
              <exon start="68913" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68839" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68731" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68727" stop="68344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCAT : GGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGA</gDNA_template>
            <first_frame> D  I  I  W  K  G  R  D  R  C  P  H  :  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  S  S  V  F  L  Y  S  N  S  </first_frame>
            <second_frame>  I  L  Y  G  R  G  E  I  G  A  P  M :   G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L  V  L  F  F  Y  I  Q  T  R </second_frame>
            <third_frame>   Y  Y  M  E  G  E  R  *  V  P  P   : W  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A  *  F  C  F  S  I  F  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73963" stop="73808"/>
                    <exon start="72056" stop="71994"/>
                    <exon start="71891" stop="71810"/>
                    <exon start="71660" stop="71590"/>
                    <exon start="71462" stop="71374"/>
                    <exon start="71294" stop="71091"/>
                    <exon start="70706" stop="70436"/>
                    <exon start="70200" stop="69973"/>
                    <exon start="69858" stop="69661"/>
                    <exon start="68913" stop="68704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68598" stop="68395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="67724" e_stop="67048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67724" e_stop="67048" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67724" stop="67048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCACTATCCTGGAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCC</gDNA_template>
            <first_frame> T  S  L  S  W  K  S  R  Q  L  F  S  M  D  H  V  T  S  N  L  V  L  T  M  N  *  C  H  M  N  C  *  *  K  H  R  W  I  N  C  L  Y  S  T  D  R  E  L  *  N  *  V  C  L  N  A  A  R  L  V  Y  L  S  L  Q  W  *  K  H  Y  Y  Y  Y  G  *  *  P  F  P  S  I  L  L  D  L  V  G  E  T  A  L  L  Q  L  E  G  F  F  L  N  P  R  E  Q  H  Q  E  Q  C  S  L  P  M  Q  V  S  M  A  Q  M  V  V  R  L  V  V  F  H  L  L  S  *  V  V  K  *  M  G  H  F  L  F  S  L  *  H  L  M  E  K  L  R  N  Y  Q  L  H  L  S  C  D  Q  S  P  G  L  P  S  Q  L  A  C  C  *  R  C  S  L  E  D  L  W  N  Q  K  Y  Q  L  L  Q  T  *  A  Q  L  L  G  P  V  V  K  C  F  S  L  L  L  Y  S  I  L  D  Q  T  M  L  *  C  H  L  W  I  Q  H  V   </first_frame>
            <second_frame>  L  H  Y  P  G  N  Q  D  N  S  F  Q  W  T  M  *  H  Q  I  W  C  *  Q  *  I  S  V  T  *  T  V  S  E  N  I  G  G  S  I  V  F  T  R  L  I  G  S  C  R  I  R  S  V  *  T  L  P  V  L  F  I  F  L  C  N  G  R  S  I  T  T  T  T  A  S  S  H  F  L  R  F  C  W  I  W  W  G  R  Q  L  F  F  N  W  K  G  S  F  *  T  L  E  S  N  T  K  N  N  V  L  F  Q  C  R  F  R  W  H  R  W  L  *  D  L  L  F  F  I  F  S  L  R  *  *  S  R  W  D  I  S  C  F  L  S  N  I  *  W  R  S  C  G  I  I  N  Y  I  C  R  A  T  N  P  L  A  Y  L  L  N  L  L  V  A  R  D  V  L  W  R  I  F  G  I  R  S  T  N  F  C  R  L  K  L  S  F  W  D  R  L  *  S  V  F  H  C  C  F  T  R  F  W  I  R  R  C  F  N  V  I  F  G  F  S  M  C  </second_frame>
            <third_frame>   F  T  I  L  E  I  K  T  T  L  F  N  G  P  C  N  I  K  S  G  V  D  N  E  L  V  S  H  E  L  L  V  K  T  *  V  D  Q  L  S  L  L  D  *  S  G  A  V  E  L  G  L  F  E  R  C  P  S  C  L  S  F  S  A  M  V  E  A  L  L  L  L  R  L  V  A  I  S  F  D  S  A  G  F  G  G  G  D  S  S  S  S  I  G  R  V  L  F  E  P  S  R  A  T  P  R  T  M  F  S  S  N  A  G  F  D  G  T  D  G  C  E  T  C  C  F  S  S  S  L  L  G  S  E  V  D  G  T  F  P  V  F  S  L  T  S  D  G  E  V  A  E  L  S  T  T  F  V  V  R  P  I  P  W  L  T  F  S  T  C  L  L  L  E  M  F  S  G  G  S  L  E  S  E  V  P  T  S  A  D  L  S  S  A  F  G  T  G  C  E  V  F  F  T  V  A  L  L  D  F  G  S  D  D  A  L  M  S  S  L  D  S  A  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67590" stop="67048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGAVELGLFERCPSCLSFSAMVEALLLLRLVAISFDSAGFGGGDSSSSIGRVLFEPSRATPRTMFSSNAGFDGTDGCETCCFSSSLLGSEVDGTFPVFSLTSDGEVAELSTTFVVRPIPWLTFSTCLLLEMFSGGSLESEVPTSADLSSAFGTGCEVFFTVALLDFGSDDALMSSLDSACA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="68518" PGL_stop="68922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68518" e_stop="68922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="68518" e_stop="68922" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68518" stop="68922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68518" stop="68850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68534" stop="68879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTATTGTCTTCATATTGTTGTATGTTCTCTGTCCGACCTGTCAATT</gDNA_template>
            <first_frame> H  I  V  Q  H  I  P  S  T  P  T  V  K  S  Q  R  G  D  T  *  I  *  I  T  P  Y  K  S  T  K  G  V  A  S  Y  L  *  L  *  Y  K  A  *  *  T  I  I  *  C  P  N  K  *  *  *  R  S  I  W  *  A  L  S  S  L  A  H  T  I  R  S  R  I  C  I  E  G  L  L  G  F  A  E  S  D  L  A  L  S  V  L  V  P  F  N  Y  *  F  L  K  L  R  P  S  E  C  L  V  Q  E  K  L  A  *  Q  C  H  I  W  P  Y  C  L  H  I  V  V  C  S  L  S  D  L  S  I </first_frame>
            <second_frame>  I  L  Y  N  I  F  L  P  P  L  P  *  N  L  N  V  V  T  H  K  Y  K  L  P  P  T  S  Q  Q  K  G  W  H  L  I  Y  N  Y  N  I  R  H  N  K  Q  *  F  D  V  Q  T  N  S  D  K  D  L  Y  G  R  P  S  Q  A  W  H  I  Q  S  G  A  G  Y  V  *  R  D  C  L  G  L  R  S  L  I  W  P  C  L  F  W  C  P  S  I  T  D  S  *  N  S  G  Q  V  S  V  L  F  K  K  S  W  P  N  N  A  I  F  G  L  I  V  F  I  L  L  Y  V  L  C  P  T  C  Q   </second_frame>
            <third_frame>   Y  C  T  T  Y  S  F  H  P  Y  R  K  I  S  T  W  *  H  I  N  I  N  Y  P  L  Q  V  N  K  R  G  G  I  L  F  I  T  I  I  *  G  I  I  N  N  N  L  M  S  K  Q  I  V  I  K  I  Y  M  V  G  P  L  K  L  G  T  Y  N  Q  E  Q  D  M  Y  R  G  I  A  W  V  C  G  V  *  F  G  L  V  C  F  G  A  L  Q  L  L  I  L  E  T  Q  A  K  *  V  S  C  S  R  K  A  G  L  T  M  P  Y  L  A  L  L  S  S  Y  C  C  M  F  S  V  R  P  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0107K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="84928" PGL_stop="83393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84928" e_stop="83393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="84928" e_stop="83393" e_length="1536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84928" stop="84412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84928" stop="84527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84928" stop="84530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84920" stop="84236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84903" stop="84057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84903" stop="84236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84278" stop="83393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGG</gDNA_template>
            <first_frame> L  F  S  L  I  *  L  L  S  S  T  T  I  I  K  *  S  S  Q  H  R  K  S  V  C  F  E  Q  K  M  G  S  V  S  L  K  I  G  D  G  T  A  R  F  K  K  A  T  Y  C  S  S  V  L  N  L  L  M  L  F  S  V  V  T  T  N  L  F  A  L  Y  A  F  T  S  S  P  K  N  P  H  H  H  L  L  L  P  H  T  H  K  N  I  S  L  I  S  E  Q  V  S  L  I  L  R  Q  I  D  S  S  Q  K  K  L  A  Q  M  E  K  E  L  L  G  Y  E  S  F  D  L  S  S  P  K  V  P  N  E  V  R  N  F  L  Q  P  H  L  L  P  L  G  K  D  S  R  T  G  I  T  E  M  V  A  S  I  G  H  S  C  V  K  S  L  D  L  L  S  Q  F  M  S  Y  K  V  N  G  L  C  P  D  D  W  S  L  G  Q  K  L  I  L  S  G  C  E  P  L  P  R  R  R  C  F  A  K  T  I  P  K  V  G  L  L  K  L  P  D  S  F  W  G  N  Y  S  E  K  I  Y  S  W  S  G  L  G  C  K  N  V  A  C  L  N  V  K  K  L  N  R  D  C  A  G  C  F  D  V  V  S  S  G  G  Y  E  K  Q  R  Y  V  K  G  R  G  K  N  D  F  L  I  D  D  V  L  G  M  L  G  N  G  G  G  I  R  I  G  F  D  I  G  G  G  S  G  T  F  A  V  R  M  A  E  R  N  V  T  I  V  T  A  T  L  N  V  D  A  P  F  N  E  F  I  A  A  R  G  V  F  P  L  Y  L  S  L  D  H  R  F  P  F  H  D  N  V  F  D  L  V  H  V  G  N  V  L  D  V  S  G  R  P  E  K  L  E  F  L  V  F  D  I  D  R  V  L  R  A  G  G  L  F  W  L  D  N  F  L  C  S  N  E  D  K  K  T  A  L  T  R  L  I  E  R  F  G  Y  K  K  L  K  W  V  V  G  E  K  I  N  G  S  G  K  S  E  V  Y  L  S  A  V  L  Q  K  P  V  R  V  *  S  Y  R  G  V  S  H  R  K  A  V  H  V  H  Y  *  H  R  I  S  E  R  I  R  L  L  L  H  N  C  *  P  A  S  *  E  G  G  G  F  G  F  V  A  G  I  I  C  L  R  S  L  R  L  F  T  Y  L  W </first_frame>
            <second_frame>  Y  F  H  *  F  S  C  L  V  L  L  Q  S  *  S  E  A  A  S  I  E  N  L  F  V  L  S  K  K  W  D  L  F  L  *  K  *  V  M  E  L  L  D  S  R  K  L  H  I  V  L  Q  F  *  I  Y  L  C  F  S  L  L  L  Q  L  I  F  L  L  Y  M  L  L  H  P  H  P  K  T  P  I  I  I  F  F  S  H  I  L  T  R  T  Y  L  *  S  Q  N  K  F  L  *  F  *  D  R  L  I  L  H  K  K  N  L  P  K  W  K  K  S  F  *  A  M  K  V  L  I  F  L  V  P  K  F  Q  M  K  *  E  I  S  C  N  P  I  C  C  L  W  V  K  I  Q  E  L  G  L  L  K  W  *  L  L  L  D  I  L  V  *  N  L  *  I  C  F  L  S  L  *  V  I  R  L  M  V  F  V  L  M  I  G  V  L  G  R  S  *  F  L  V  A  V  S  L  C  Q  E  G  G  V  L  L  R  Q  Y  L  R  L  V  Y  L  N  Y  L  I  H  F  G  E  I  I  V  K  R  F  I  V  G  V  V  L  V  V  R  M  *  L  V  *  M  L  R  N  *  I  E  I  V  L  V  V  L  M  L  *  V  V  G  G  M  R  S  K  D  M  L  R  V  E  G  K  M  I  S  *  L  M  M  Y  W  E  C  W  E  M  V  G  E  L  E  L  D  L  I  L  V  V  D  L  V  H  L  L  L  E  W  L  K  G  M  *  L  *  L  L  L  R  *  M  S  M  H  H  L  T  S  S  L  L  H  G  V  Y  S  R  C  I  *  V  *  I  I  G  F  P  F  M  I  M  C  L  I  W  Y  M  W  E  M  Y  W  M  *  A  D  V  L  R  S  *  S  F  *  C  L  I  L  I  E  F  *  G  L  E  G  C  F  G  W  I  T  F  F  V  Q  M  K  T  R  K  L  H  *  R  G  *  S  N  V  L  G  T  K  S  L  N  G  L  L  V  R  R  S  M  G  R  E  N  L  R  F  I  C  L  L  F  Y  R  N  Q  *  E  F  D  R  I  A  G  F  L  I  E  K  L  C  M  F  I  I  D  I  E  *  V  N  V  F  V  F  F  Y  T  T  A  N  Q  H  H  R  R  E  A  G  S  A  L  W  Q  V  L  Y  V  Y  D  L  *  D  Y  S  L  I  F   </second_frame>
            <third_frame>   I  F  T  D  L  V  A  *  F  Y  Y  N  H  K  V  K  Q  P  A  S  K  I  C  L  F  *  A  K  N  G  I  C  F  F  E  N  R  *  W  N  C  *  I  Q  E  S  Y  I  L  F  F  S  S  K  S  T  Y  A  F  L  C  C  Y  N  *  S  F  C  F  I  C  F  Y  I  L  T  Q  K  P  P  S  S  S  S  S  P  T  Y  S  Q  E  H  I  F  N  L  R  T  S  F  F  N  S  K  T  D  *  F  F  T  K  K  T  C  P  N  G  K  R  A  F  R  L  *  K  F  *  S  F  *  S  Q  S  S  K  *  S  E  K  F  L  A  T  P  F  A  A  F  G  *  R  F  K  N  W  D  Y  *  N  G  S  F  Y  W  T  F  L  C  E  I  F  R  F  A  F  S  V  Y  E  L  *  G  *  W  S  L  S  *  *  L  E  S  W  A  E  A  D  S  *  W  L  *  A  F  A  K  K  E  V  F  C  *  D  N  T  *  G  W  F  T  *  I  T  *  F  I  L  G  K  L  *  *  K  D  L  *  L  E  W  S  W  L  *  E  C  S  L  F  K  C  *  E  I  E  *  R  L  C  W  L  F  *  C  C  K  *  W  G  V  *  E  A  K  I  C  *  G  *  R  E  K  *  F  L  D  *  *  C  I  G  N  A  G  K  W  W  G  N  *  N  W  I  *  Y  W  W  W  I  W  Y  I  C  C  *  N  G  *  K  E  C  D  Y  S  Y  C  Y  V  E  C  R  C  T  I  *  R  V  H  C  C  T  G  C  I  P  V  V  F  E  F  R  S  S  V  S  L  S  *  *  C  V  *  F  G  T  C  G  K  C  I  G  C  E  R  T  S  *  E  V  R  V  F  S  V  *  Y  *  *  S  F  E  G  W  R  V  V  L  V  G  *  L  S  L  F  K  *  R  Q  E  N  C  I  N  E  A  D  R  T  F  W  V  Q  K  A  *  M  G  C  W  *  E  D  Q  W  V  G  K  I  *  G  L  F  V  C  C  S  T  E  T  S  K  S  L  I  V  S  R  G  F  S  *  K  S  C  A  C  S  L  L  T  *  N  K  *  T  Y  S  S  S  F  T  Q  L  L  T  S  I  I  G  G  R  R  V  R  L  C  G  R  Y  Y  M  S  T  I  S  K  I  I  H  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84880" stop="83570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQHRKSVCFEQKMGSVSLKIGDGTARFKKATYCSSVLNLLMLFSVVTTNLFALYAFTSSPKNPHHHLLLPHTHKNISLISEQVSLILRQIDSSQKKLAQMEKELLGYESFDLSSPKVPNEVRNFLQPHLLPLGKDSRTGITEMVASIGHSCVKSLDLLSQFMSYKVNGLCPDDWSLGQKLILSGCEPLPRRRCFAKTIPKVGLLKLPDSFWGNYSEKIYSWSGLGCKNVACLNVKKLNRDCAGCFDVVSSGGYEKQRYVKGRGKNDFLIDDVLGMLGNGGGIRIGFDIGGGSGTFAVRMAERNVTIVTATLNVDAPFNEFIAARGVFPLYLSLDHRFPFHDNVFDLVHVGNVLDVSGRPEKLEFLVFDIDRVLRAGGLFWLDNFLCSNEDKKTALTRLIERFGYKKLKWVVGEKINGSGKSEVYLSAVLQKPVRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="85361" PGL_stop="86123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85361" e_stop="86123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="85361" e_stop="86123" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85361" stop="86123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGACCGTGATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGAGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTTTGAACTAATCTCATGTCTGTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTAAAGTAAAAAGAGATGATCATGGGGGATATAATAATGCACGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  K  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  K  I  H  L  N  C  G  L  I  *  R  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  D  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  E  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  S  M  P  Q  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  C  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  M  G  D  I  I  M  H  G  D  V  A  </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  L  S  *  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  S  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  S  D  G  E  R  S  T  *  I  V  D  *  F  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  S  L  *  V  D  A  F  T  I  S  R  F  *  D  R  D  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  W  R  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  P  C  L  K  C  D  I  A  A  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  V  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  W  G  I  *  *  C  T  G  T  W  Q </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  D  P  L  E  L  W  T  D  L  K  G  R  Y  D  H  L  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  F  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  K  V  K  R  D  D  H  G  G  Y  N  N  A  R  G  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85363" stop="86121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVISTKLLLAKVLYKYFYLIHIFSHNFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIEYLTVKDPLELWTDLKGRYDHLKATVLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDMLEKTLTTFHASNVILQQQYREKGFQKYFELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSKVKRDDHGGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="86657" PGL_stop="87202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86657" e_stop="87202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="86657" e_stop="87202" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86657" stop="87202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86767" stop="87135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAATGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  N  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  S  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  M  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  R  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86658" stop="87200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDNATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPAFSSGSYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="88513" PGL_stop="90220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88513" e_stop="90220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="88513" e_stop="90220" e_length="1708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88513" stop="89223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89089" stop="89726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89129" stop="89756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89129" stop="89704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89179" stop="89731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89344" stop="90086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89840" stop="90220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTTATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACTCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  S  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  G  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  T  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  E  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  D  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  L  *  K  T  *  N  A  S  N  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  L  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  E  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  P  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  I  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  G  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  Y  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  S  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  V  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  D  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88515" stop="90128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKREVFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDSICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLVNNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQTDYLFTCGDTAISWRSMKQTLVATSSNHAEIIAIHEASRMTHHIQKMCGFSLKKNIPTTMYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="96444" PGL_stop="91265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96444" e_stop="96247"/>
            <exon e_start="93685" e_stop="93607"/>
            <exon e_start="93528" e_stop="93464"/>
            <exon e_start="93261" e_stop="93162"/>
            <exon e_start="93024" e_stop="92983"/>
            <exon e_start="92876" e_stop="92835"/>
            <exon e_start="92558" e_stop="92359"/>
            <exon e_start="91602" e_stop="91265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.515" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96444" e_stop="96247" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.515">
            <gDNA_intron_boundary i_start="96246" i_stop="93686" i_length="2561"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93685" e_stop="93607" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93528" e_stop="93464" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.541">
            <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93261" e_stop="93162" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93024" e_stop="92983" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92876" e_stop="92835" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92558" e_stop="92359" e_length="200"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="91602" e_stop="91265" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96444" stop="96247"/>
              <exon start="93685" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96444" stop="96247"/>
              <exon start="93685" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="93000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96444" stop="96247"/>
              <exon start="93685" stop="93607"/>
              <exon start="93528" stop="93500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93004" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374818" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG : CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG : CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG : GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG : GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG : GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG : GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG : GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAATTTAAATA</gDNA_template>
            <first_frame> F  F  F  F  F  N  G  *  R  K  N  S  D  Q  E  N  R  *  L  H  S  K  T  S  Y  I  F  K  E  E  K  R  F  I  Q  E  S  *  R  T  F  C  S  L  *  C  *  C  C  S  H  H  F  L  F  Y  W  K  I  I  *  L  F  *  L  K  :  H  E  T  N  S  *  E  A  *  F  A  F  Q  K  S  G  K  I  G  S  T  I  T  *  T  S   : A  C  R  K  *  Q  L  L  Q  I  K  Q  G  N  F  R  K  K  S  S  I  K  :  A  N  E  G  R  R  T  S  R  T  K  Y  *  R  V  A  T  I  G  E  I  S  *  N  W  I  E  P  R  H  R  E  K   : G  *  *  N  N  E  R  D  Q  P  T  P  T  K   : G  Y  A  S  N  G  R  K  *  K  I  K  A  T   : G  D  G  D  I  *  *  *  *  *  *  *  *  W  I  *  R  G  R  S  S  N  I  *  T  R  K  W  I  *  *  *  *  *  *  R  W  P  I  I  *  I  S  N  K  S  M  *  L  N  *  S  S  S  S  R  *  *  *  F  *  Y  F  S  Q  I  G  :  A  T  L  L  R  L  K  R  S  K  A  R  C  G  Y  F  C  M  L  L  E  E  G  E  K  K  K  *  L  L  I  I  I  I  N  *  C  L  I  N  V  K  A  N  P  K  N  F  I  L  C  M  *  L  V  Y  *  S  H  V  F  V  S  H  S  L  Y  K  Y  Y  C  *  Y  L  L  T  *  L  T  S  T  N  N  L  L  *  L  N  F  V  T  C  N  Y  I  K  A  *  L  F  N  Y  L  T  F  F  C  C  C  K  F  K   </first_frame>
            <second_frame>  F  F  F  F  L  M  A  R  E  K  I  Q  I  K  K  I  D  N  S  T  A  R  Q  V  T  F  S  K  R  R  R  G  L  F  K  K  A  E  E  L  S  V  L  C  D  A  D  V  A  L  I  I  F  S  S  T  G  K  L  F  D  Y  S  S  S  S :   M  K  Q  I  L  E  R  R  D  L  H  S  K  N  L  E  K  L  D  Q  P  S  L  E  L  Q  :  L  V  E  N  S  N  Y  S  R  L  S  K  E  I  S  E  K  S  H  R  L  R :   Q  M  R  G  E  E  L  Q  G  L  N  I  E  E  L  Q  Q  L  E  R  S  L  E  T  G  L  S  R  V  I  E  R  K  :  G  D  K  I  M  R  E  I  N  Q  L  Q  Q  K  :  G  M  H  L  M  E  E  N  E  K  L  R  Q  Q  :  V  M  E  I  S  N  N  N  N  N  N  N  N  G  Y  R  E  A  G  V  V  I  F  E  P  E  N  G  F  N  N  N  N  N  E  D  G  Q  S  S  E  S  V  T  N  P  C  N  S  I  D  P  P  P  Q  D  D  D  S  S  D  T  S  L  K  L  G :   L  P  Y  S  G  *  R  D  Q  K  Q  G  V  A  I  F  V  C  Y  *  K  K  E  K  K  K  S  N  Y  *  L  L  *  L  I  N  V  *  L  M  *  K  L  T  P  K  I  S  Y  Y  V  C  N  W  C  I  N  L  M  Y  S  S  P  I  V  Y  I  N  I  I  V  S  I  Y  *  L  N  *  L  A  L  I  I  F  Y  N  *  T  L  *  L  V  T  I  *  R  L  N  Y  L  I  I  *  L  F  S  V  A  V  N  L  N  </second_frame>
            <third_frame>   F  F  F  F  *  W  L  E  K  K  F  R  S  R  K  *  I  T  P  Q  Q  D  K  L  H  F  Q  R  G  E  E  V  Y  S  R  K  L  K  N  F  L  F  S  V  M  L  M  L  L  S  S  F  S  L  L  L  E  N  Y  L  T  I  L  A  Q   : A  *  N  K  F  L  R  G  V  I  C  I  P  K  I  W  K  N  W  I  N  H  H  L  N  F  S :   L  *  K  I  A  T  T  P  D  *  A  R  K  F  P  K  K  V  I  D  *   : G  K  *  G  E  K  N  F  K  D  *  I  L  K  S  C  N  N  W  R  D  L  L  K  L  D  *  A  A  S  *  R  E  R :   V  I  K  *  *  E  R  S  T  N  S  N  K  R :   V  C  I  *  W  K  K  M  K  N  *  G  N  R :   *  W  R  Y  L  I  I  I  I  I  I  I  M  D  I  E  R  Q  E  *  *  Y  L  N  Q  K  M  D  L  I  I  I  I  M  K  M  A  N  H  L  N  Q  *  Q  I  H  V  T  Q  L  I  L  L  L  K  M  M  I  V  L  I  L  L  S  N  W   : G  Y  L  T  Q  A  E  E  I  K  S  K  V  W  L  F  L  Y  V  I  R  R  R  R  K  K  K  V  T  T  N  Y  Y  N  *  L  M  S  D  *  C  K  S  *  P  Q  K  F  H  I  M  Y  V  I  G  V  L  I  S  C  I  R  L  P  *  F  I  *  I  L  L  L  V  S  I  N  L  I  N  *  H  *  *  S  F  I  I  E  L  C  D  L  *  L  Y  K  G  L  I  I  *  L  F  D  F  F  L  L  L  *  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96443" stop="96247"/>
                    <exon start="93685" stop="93607"/>
                    <exon start="93528" stop="93464"/>
                    <exon start="93261" stop="93162"/>
                    <exon start="93024" stop="92983"/>
                    <exon start="92876" stop="92835"/>
                    <exon start="92558" stop="92359"/>
                    <exon start="91602" stop="91584"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFLMAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGLPYSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 156 chains have been computed
$ 
$ memory statistics:
$ 493032 bytes spliced alignments in total
$ 115 spliced alignments have been stored
$ 4287 bytes was the average size of a spliced alignment
$ 26608 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1773 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 190 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 06:46:39
-->
