<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:47:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E320354" ref_strand="+" ref_description="SGN-E320354 	[cTOB-22-M15]">
      <seq>tttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16118" stop="22817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16418" g_stop="16547" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19525" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20550" g_stop="20623" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="434" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21043" g_stop="21156" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="548" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21157" i_stop="21233" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21234" g_stop="21341" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="655" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22482" g_stop="22517" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="691" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E320354" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16418" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19525"/>
          <exon e_start="20550" e_stop="20623"/>
          <exon e_start="21043" e_stop="21156"/>
          <exon e_start="21234" e_stop="21341"/>
          <exon e_start="22482" e_stop="22517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAG</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGG-ACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E337369" ref_strand="+" ref_description="SGN-E337369 	[cTOE-18-B16]">
      <seq>tttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16118" stop="17929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16418" g_stop="16547" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17721" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="228" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E337369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16418" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTT</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E331599" ref_strand="+" ref_description="SGN-E331599 	[cTOD-9-P12]">
      <seq>ttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16119" stop="20920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16419" g_stop="16547" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="220" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19525" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20550" g_stop="20620" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="430" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E331599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16419" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19525"/>
          <exon e_start="20550" e_stop="20620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACT</genome_strand>
        <mrna_strand>TTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E270333" ref_strand="+" ref_description="SGN-E270333 	[cLEM-1-E15]">
      <seq>ggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16126" stop="20891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16426" g_stop="16547" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="213" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="274" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19525" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="352" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20550" g_stop="20591" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="394" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E270333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16426" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19525"/>
          <exon e_start="20550" e_stop="20591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATA</genome_strand>
        <mrna_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E391936" ref_strand="+" ref_description="SGN-E391936 	[TUS-27-F8]">
      <seq>agacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16128" stop="19800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16428" g_stop="16547" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="272" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19500" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E391936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16428" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATT</genome_strand>
        <mrna_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E302707" ref_strand="+" ref_description="SGN-E302707 	[cLEY-1-O11]">
      <seq>acaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgaacgcgataatgaagttaacaggatcctttgatagaatcaagttgaatccattcgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgatagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16130" stop="21393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16430" g_stop="16547" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="271" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19525" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="349" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20550" g_stop="20623" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="423" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21043" g_stop="21093" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="474" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E302707" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16430" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19525"/>
          <exon e_start="20550" e_stop="20623"/>
          <exon e_start="21043" e_stop="21093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCAT-GTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTG</genome_strand>
        <mrna_strand>ACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAACGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTGATAGAATCAAGTTGAATCCATTCGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGATAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E263777" ref_strand="+" ref_description="SGN-E263777 	[cLEG-60-D10]">
      <seq>acagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctccggagaaggattatattctgaaccaggttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="16141" stop="19815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16441" g_stop="16547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17535" g_stop="17625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="198" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="259" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19448" g_stop="19515" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="327" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E263777" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16441" e_stop="16547"/>
          <exon e_start="17535" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAAT</genome_strand>
        <mrna_strand>ACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCCGGAGAAGGATTATATTCTGAACCAGGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E551957" ref_strand="+" ref_description="SGN-E551957 	[cTSB-2-G13]">
      <seq>catccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatntctgtttatgaactgaatcttgataggattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="17291" stop="23224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17591" g_stop="17625" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17715" g_stop="17775" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="96" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19448" g_stop="19525" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="174" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20550" g_stop="20623" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="248" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21043" g_stop="21156" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="362" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21157" i_stop="21233" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21234" g_stop="21341" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="470" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22482" g_stop="22520" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="509" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22643" g_stop="22923" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="790" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="804"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E551957" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17591" e_stop="17625"/>
          <exon e_start="17715" e_stop="17775"/>
          <exon e_start="19448" e_stop="19525"/>
          <exon e_start="20550" e_stop="20623"/>
          <exon e_start="21043" e_stop="21156"/>
          <exon e_start="21234" e_stop="21341"/>
          <exon e_start="22482" e_stop="22520"/>
          <exon e_start="22643" e_stop="22923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATT</genome_strand>
        <mrna_strand>CATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATNTCTGTTTATGAACTGAATCTTGATAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E214409" ref_strand="+" ref_description="SGN-E214409 	[cLEC-77-M4]">
      <seq>ttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgnttcacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatattttaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="20240" stop="23139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20548" g_stop="20623" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="89" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21043" g_stop="21156" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="203" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21157" i_stop="21233" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21234" g_stop="21341" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="311" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22482" g_stop="22520" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22643" g_stop="22839" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="547" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E214409" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20548" e_stop="20623"/>
          <exon e_start="21043" e_stop="21156"/>
          <exon e_start="21234" e_stop="21341"/>
          <exon e_start="22482" e_stop="22520"/>
          <exon e_start="22643" e_stop="22839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTT</genome_strand>
        <mrna_strand>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGNTTCACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTTAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E302708" ref_strand="-" ref_description="SGN-E302708 	[cLEY-1-O11]">
      <seq>gcttgaagaaagatgaggaagaaccaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagctgaaaaccagaagatcccaataaatcttacgttcaacgacctgtgaaacgagggtaaaacacatgtacgtcaactagttttggttcagtgatatttaaagcttggatccatttggatccggagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatttctgtttatgaactgaatcttgataggattatttgtgatatgttatatgctaatatgcatatacgacgggtgactattgtggagttttatatatgaaacttgatccctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="20953" stop="23314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21253" g_stop="21341" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22482" g_stop="22520" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="128" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22643" g_stop="23014" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="501" r_length="373" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E302708" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302708" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21253" e_stop="21341"/>
          <exon e_start="22482" e_stop="22520"/>
          <exon e_start="22643" e_stop="23014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAA-CAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</genome_strand>
        <mrna_strand>GCTTGAAGAAAGATGAGGAAGAACCAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGCTGAAAACCAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGGTAAAACACATGTACGTCAACTAGTTTTGGTTCAGTGATATTTAAAGCTTGGATCCATTTGGATCCGGAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E356361" ref_strand="+" ref_description="SGN-E356361 	[cTOS-20-D1]">
      <seq>ggatttgtgccaactgctgcgcaagattcattaaatggagatgtgttctctaccagaactttttccattttcaggtctcaatgctgagacttctggttaaagatggaggaattctaaccatccgaccacaatcccgggtgacaaacatgataatattattgaacctaaggtcttcagaacatgataattgttatgaacctaatcttcatgatgatatgaaattgtaaagttgaagacaaccgacatgttccaaaatctagacttactgaattgagtttctaaaacttttcttctatttctcatcaggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagaatttctgttatgaactgaaatctgatanggatatttgtgatatngtatatgctaatatgcatatacgacgggtgactattgtggagntttatatatgaaacttgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="21876" stop="23300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22176" g_stop="22520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22643" g_stop="23000" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="703" r_length="358" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E356361" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22176" e_stop="22520"/>
          <exon e_start="22643" e_stop="23000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAG-ATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCC</genome_strand>
        <mrna_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGAATTTCTG-TTATGAACTGAAATCTGATANGGATATTTGTGATATNGTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGNTTTATATATGAAACTTGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E352648" ref_strand="+" ref_description="SGN-E352648 	[cTOS-11-I9]">
      <seq>ggatttgtgccaactgctgcgcaagattcattaaatggagatgtgttctctaccagaactttttccattttcaggtctcaatgctgagacttctggttaaagatggaggaattctaaccatccgaccacaatcccgggtgacaaacatgataatattattgaacctaaggtcttcagaacatgataattgttatgaacctaatcttcatgatgatatgaaattgtaaagttgaagacaaccgacatgttccaaaatctagacttactgaattgagtttctaaaacttttcttctatttctcatcaggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaagctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="21876" stop="23112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22176" g_stop="22520" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22643" g_stop="22812" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="515" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E352648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22176" e_stop="22520"/>
          <exon e_start="22643" e_stop="22812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTG</genome_strand>
        <mrna_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAAGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E369786" ref_strand="-" ref_description="SGN-E369786 	[TUS-25-C17]">
      <seq>tcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcccctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccaaaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttaaattcttttcctatactttgagcttcatgcttttaacatttgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttaaaaatctataaggctttttgaggcactcagtacaatacacaacaacagcccttcagacagattgcaggcacaaaagcagtcaaaagtttcccattgtacattgacaaacaaaatcatatcatcatgtattactaaaagtgggaacaaaaaaaaaaagttaacggttttacccctattaaattattttttataaaaaattagttaattaaataattacatgttttttaaaaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="24564" stop="23368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24264" g_stop="24171" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24170" i_stop="24090" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24089" g_stop="23667" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="517" r_length="423" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="548"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E369786" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369786" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24264" e_stop="24171"/>
          <exon e_start="24089" e_stop="23667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</genome_strand>
        <mrna_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCCCCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAAAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAAATTCTTTTCCTATACTTTGAGCTTCATGCTTTTAACATTTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTAAAAATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAAAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAAAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTTTTAAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E369787" ref_strand="+" ref_description="SGN-E369787 	[TUS-25-C17]">
      <seq>tttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaggggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccagaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttagattcttttcctatactttgagcttcatgctcttaacatctgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttgaagatctataaggctttttgaggcactcagtacaatacacaacaacagcccttcagacagattgcaggcacagaagcagtcaaaagtttcccattgtacatttgacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="25550" stop="23492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25330" g_stop="25322" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25245" g_stop="25170" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="85" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24532" g_stop="24397" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24396" i_stop="24308" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24307" g_stop="24171" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="358" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24170" i_stop="24090" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24089" g_stop="23792" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="657" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E369787" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25330" e_stop="25322"/>
          <exon e_start="25245" e_stop="25170"/>
          <exon e_start="24532" e_stop="24397"/>
          <exon e_start="24307" e_stop="24171"/>
          <exon e_start="24089" e_stop="23792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACA-TTGACAAACA</genome_strand>
        <mrna_strand>TTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTTGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E247402" ref_strand="+" ref_description="SGN-E247402 	[cLEF-46-L19]">
      <seq>tttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaagccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaagggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccagaagccgtccccaagttgcgaacgatcgaagttcttttgcttggacttagattcttttcctatactttgagcttcatgctcttaacatctgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="25550" stop="23602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25330" g_stop="25322" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25245" g_stop="25170" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="85" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24532" g_stop="24397" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24396" i_stop="24308" i_length="89">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24307" g_stop="24171" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="358" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24170" i_stop="24090" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24089" g_stop="23902" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="546" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E247402" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25330" e_stop="25322"/>
          <exon e_start="25245" e_stop="25170"/>
          <exon e_start="24532" e_stop="24397"/>
          <exon e_start="24307" e_stop="24171"/>
          <exon e_start="24089" e_stop="23902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTG</genome_strand>
        <mrna_strand>TTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAAGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAAGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAAGCCGTCCCCAAGTTGCGAACGATCGAAGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E287352" ref_strand="+" ref_description="SGN-E287352 	[cLES-15-I17]">
      <seq>agagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaggggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="25815" stop="23936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25515" g_stop="25322" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25245" g_stop="25170" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="270" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24532" g_stop="24397" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="406" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24396" i_stop="24308" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24307" g_stop="24236" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="478" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E287352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25515" e_stop="25322"/>
          <exon e_start="25245" e_stop="25170"/>
          <exon e_start="24532" e_stop="24397"/>
          <exon e_start="24307" e_stop="24236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACC</genome_strand>
        <mrna_strand>AGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E245589" ref_strand="+" ref_description="SGN-E245589 	[cLEF-43-B1]">
      <seq>gagattatgttgataggggccagcacagcttggagaccattacccttctccttgcattaaaggtcgagtatccttacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcangggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="26143" stop="23990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25843" g_stop="25782" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25781" i_stop="25697" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25696" g_stop="25598" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="161" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25597" i_stop="25522" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25521" g_stop="25322" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="361" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25245" g_stop="25170" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24532" g_stop="24397" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="573" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24396" i_stop="24308" i_length="89">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24307" g_stop="24290" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="591" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E245589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25843" e_stop="25782"/>
          <exon e_start="25696" e_stop="25598"/>
          <exon e_start="25521" e_stop="25322"/>
          <exon e_start="25245" e_stop="25170"/>
          <exon e_start="24532" e_stop="24397"/>
          <exon e_start="24307" e_stop="24290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTG</genome_strand>
        <mrna_strand>GAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG.....................................................................................GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCANGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E260159" ref_strand="+" ref_description="SGN-E260159 	[cLEG-52-B13]">
      <seq>ttacatgggcaatttggggatctcatgcgtctttttgacgagtatggttccccgtcaactgctggggatattgcgtatattgattacctcttcttgggagattatgttgataggggccagcacagcttggagaccattacccttctccttgcattaaaggtcgagtatccttacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgncacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="28058" stop="24157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27758" g_stop="27685" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27684" i_stop="25867" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25866" g_stop="25782" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25781" i_stop="25697" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25696" g_stop="25598" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="258" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25597" i_stop="25522" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25521" g_stop="25322" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="458" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25245" g_stop="25170" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="534" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24532" g_stop="24457" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="610" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E260159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27758" e_stop="27685"/>
          <exon e_start="25866" e_stop="25782"/>
          <exon e_start="25696" e_stop="25598"/>
          <exon e_start="25521" e_stop="25322"/>
          <exon e_start="25245" e_stop="25170"/>
          <exon e_start="24532" e_stop="24457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATG</genome_strand>
        <mrna_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG.....................................................................................GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGNCACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E325795" ref_strand="+" ref_description="SGN-E325795 	[cTOC-12-C6]">
      <seq>attatttttagtattgatatggatgtggattcaactagggtggggtgagtccgatcacgatccgactgttcagaatgatagttcgacgtcggaacaacagcttaatgatgagtcttcaacttcgttgcagcagcaaagttcacaaactcagcaacagcagcagcaaagtagtagtagtagtagtgttcctgctgttgcgggaccaaggtgtgctccgacgtattcggtggtgcacgaagtgatagagaagaaggaagatggtccagggccaaggtgtgggcatacgttaacggctgtaccagctgttggtgaagaaggttctcctaattatattggtccaaggcttattctttttggtggtgctactgctcttgagggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="33671" stop="32690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33363" g_stop="32990" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="384" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E325795" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33363" e_stop="32990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTGATATGGATGTGGATTCAACTATGGTATCG-GAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTC</genome_strand>
        <mrna_strand>AGTATTGATATGGATGTGGATTCAACTAGGGTGGGGTGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E338184" ref_strand="+" ref_description="SGN-E338184 	[cTOE-13-F4]">
      <seq>ttttaagggcatactgtgcctctcgtggttatgttgcttcaagcggattgcccgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatggaaagctgccacactttgaaatgcctccaggagaatcagacgatgaagctagtgaagaggaggatgaaattgttacagaggatgctgataatcctataatgtctggttctgatgaggatgatgacgacgatgaggatgaggatgaggatgaggatgatgaagacattaatgcacatctagatcatgttctgagtgatttaagtacgtttgatatggccaatggacttgcttctaaccagacagctcgtaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="36600" stop="35648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36300" g_stop="35948" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E338184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36300" e_stop="35948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAG</genome_strand>
        <mrna_strand>TTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E265949" ref_strand="+" ref_description="SGN-E265949 	[cLEI-6-M7]">
      <seq>tctatcagaaagaaatgggctgtatacttccaccaacaagggattctttatcttttctgggcagctaaagctgactctgctgctctcaacgcttcataagtaccaatgagctctcaggaggcaggtgatgctgatactaaaatattaggcagggaggagctattggcccgattacagtctgcaccagaggagatatttttgactaagaataggttagcttctgatgctgatgagaacttggcataagatgttcaatctacaactgtgatggtggggtttgcggggtatcctaatgttgggaaaagttcaacgattaatgctttgttcggggaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="37233" stop="36295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37022" g_stop="37015" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37014" i_stop="36924" i_length="91">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36923" g_stop="36595" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="337" r_length="329" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E265949" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37022" e_stop="37015"/>
          <exon e_start="36923" e_stop="36595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAAC</genome_strand>
        <mrna_strand>TCTATCAG...........................................................................................AAAGAAATGGGCTGTATACTTCCACCAACAAGGGATTCTTTATCTTTTCTGGGCAGCTAAAGCTGACTCTGCTGCTCTCAACGCTTCATAAGTACCAATGAGCTCTCAGGAGGCAGGTGATGCTGATACTAAAATATTAGGCAGGGAGGAGCTATTGGCCCGATTACAGTCTGCACCAGAGGAGATATTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCATAAGATGTTCAATCTACAACTGTGATGGTGGGGTTTGCGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGTTCGGGGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E331367" ref_strand="+" ref_description="SGN-E331367 	[cTOD-9-C16]">
      <seq>aagcttttctagcttggcgacgcaatcttgcgaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagtcgaccaacacaaaaaaacaatgcttcttgttaacaaagctgatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttcttttctggtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaatgagctctcaagaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggcccgcttacagtctgcagcagaggagatagttttgactaagaataggttagcttctgatgctgatgagaacttggcagaagatgttcagtctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaacgaataatgctttggtaggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="39944" stop="36296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39644" g_stop="39611" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39610" i_stop="38970" i_length="641">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38969" g_stop="38876" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="128" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38875" i_stop="37468" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37467" g_stop="37411" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="185" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37410" i_stop="37095" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37094" g_stop="37015" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37014" i_stop="36924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36923" g_stop="36596" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="593" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E331367" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39644" e_stop="39611"/>
          <exon e_start="38969" e_stop="38876"/>
          <exon e_start="37467" e_stop="37411"/>
          <exon e_start="37094" e_stop="37015"/>
          <exon e_start="36923" e_stop="36596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAA</genome_strand>
        <mrna_strand>AAGCTTTTCTAGCTTGGCGACGCAATCTTGCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGAATAATGCTTTGGTAGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E297163" ref_strand="+" ref_description="SGN-E297163 	[cLET-29-C12]">
      <seq>gcaggcccccatggaatactaaaatgtccgtggaagagcttgatattaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagtacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagtcgaccaacacaaaaaaacaatgcttcttgttaacaaagctgatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="40000" stop="36576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39701" g_stop="39611" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39610" i_stop="38970" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38969" g_stop="38876" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="185" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38875" i_stop="37468" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37467" g_stop="37411" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="242" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37410" i_stop="37095" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37094" g_stop="37015" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="322" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37014" i_stop="36924" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36923" g_stop="36876" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="370" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E297163" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39701" e_stop="39611"/>
          <exon e_start="38969" e_stop="38876"/>
          <exon e_start="37467" e_stop="37411"/>
          <exon e_start="37094" e_stop="37015"/>
          <exon e_start="36923" e_stop="36876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTT</genome_strand>
        <mrna_strand>GCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGTACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E340263" ref_strand="+" ref_description="SGN-E340263 	[cTOF-2-J12]">
      <seq>gctgctcctccgccgccgccgcctaccttcaccgccgtcatctaccaccgactacggtgaccaaaaagtcacaatctttgaatactcatatagtttctgtaactgggttttcactttttttttttgttaagctaattgaatttgaagagaaaaggagtaatgggtaaaggagagaaaagttcgttaggtagggcactggtgaagcaccataatcagatgattcagcaatcgaaagataagggtcgagtttataggaatcataataagaaggttctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgtctctattctgaccttaatcctcctgttaatcttctcgtcaatctggactctggctctagttctggtgatatgcgacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgcgttccacgcaggcccccatggaatactaaaatgtccgtggaagagcttgatattaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttngtgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="45189" stop="37132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44889" g_stop="44507" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44506" i_stop="39875" i_length="4632">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39874" g_stop="39773" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="485" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39772" i_stop="39698" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39697" g_stop="39611" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39610" i_stop="38970" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38969" g_stop="38876" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="666" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38875" i_stop="37468" i_length="1408">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37467" g_stop="37432" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="702" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E340263" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44889" e_stop="44507"/>
          <exon e_start="39874" e_stop="39773"/>
          <exon e_start="39697" e_stop="39611"/>
          <exon e_start="38969" e_stop="38876"/>
          <exon e_start="37467" e_stop="37432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTT</genome_strand>
        <mrna_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTNGTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E325855" ref_strand="+" ref_description="SGN-E325855 	[cTOC-12-H10]">
      <seq>ctagtctcgagtttttttttttttttttttcaacatttcgtagtgtcatggttatatcgaagccaagatcaattcgtggtaattttctcaggtgcaacatagaagaatcttagagtagaagaacaaaatgaaaaaatgcagaataagtgccctttttttccccattcggaacaattaccttactgttctgttttttcagctgtgagccgttcattttagctgaactatagagtgaaaggggtttgaatcgttgttacaatcatatgcatcattttcaatgaggccaagaggccaagtctagcactgctgacaacttgttttgccatgttaaatagttatgggatggtaaaggaaggatttgctatcgcaaaaatccatactaaaggaaggagtccctttttccatggcacagcctcagttgctttgatggaatgcttacatgaaaggcttaattgagtgttgcgggtagaattgctgtatgaggagtccacttaaaataaaaggaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="85451" stop="41571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42383" g_stop="41871" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E325855" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42383" e_stop="41871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</genome_strand>
        <mrna_strand>CTAGT-CTCGAGTTTTTTTTTTTTTTTTTTTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E223633" ref_strand="-" ref_description="SGN-E223633 	[cLEL-14-O13]">
      <seq>tcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctctgaaggggaaacgttatatggttataatcaagagagtgaatactgggagttgtttcccttcaccagtgcataaaatctcttaatgatgcctattatgggggtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttncttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaatttcatcattgctgcaaaattatcttaatataattataaagtttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="46119" stop="45150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45819" g_stop="45450" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="385"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E223633" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45819" e_stop="45450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</genome_strand>
        <mrna_strand>TCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGGGGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATGGGGGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTNCTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E376046" ref_strand="-" ref_description="SGN-E376046 	[TUS-40-G22]">
      <seq>gaaaacttttaattgcaatttttacatttttcttcttcttattcttcctcttatttttgaatcatgttgtttagcaagagttcaagttcatattatcaacaagcttcctgatggactggcaatgactctccattgtcaatctcatgacaatgatttaggacagttgagattgacgggaggtgacgaagctagttggacttttagtgttaatttttggggcaccaatatgttttattgcgacgctcaatgggatgatagttccacaacatatcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctttgaagaagaaacgttatatggttataatcaaaagagtgaatactgggagttgtttcccttcaccagtgcataaaatcttttaatgatgcctattatcttcgtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttacttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="46389" stop="45200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46089" g_stop="45501" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="608"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E376046" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376046" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46089" e_stop="45501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</genome_strand>
        <mrna_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCAATATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTTTGAAGAAGAAACGTTATATGGTTATAATCAAAAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTTTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E376047" ref_strand="+" ref_description="SGN-E376047 	[TUS-40-G22]">
      <seq>aaaacttttaattgcaatttttacatttttcttcttcttattcttcctcttatttttgaatcatgttgtttagcaagagttcaagttcatattatcaacaagcttcctgatggactggcaatgactctccattgtcaatctcatgacaatgatttaggacagttgagattgacgggaggtgacgaagctagttggacttttagtgttaatttttggggcaccaatatgttttattgcgacgctcaatgggatgatagttccacaacatatcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctctgaagaagaaacgttatatggttataatcaagagagtgaatactgggagttgtttcccttcaccagtgcataaaatctcttaatgatgcctattatcttcgtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttacttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="46388" stop="45200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46088" g_stop="45501" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="608"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E376047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46088" e_stop="45501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</genome_strand>
        <mrna_strand>AAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCAATATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E346129" ref_strand="+" ref_description="SGN-E346129 	[cTOF-34-M1]">
      <seq>gaaggacaatttctcaattttttcagaagaaaaaaaaaaagccgaaagattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaaagagagttcagtgggacaagcgaaagcgatgatgaagttgttggacatgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="63945" stop="59681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63645" g_stop="63598" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63597" i_stop="62335" i_length="1263">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62334" g_stop="62264" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="119" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62263" i_stop="62087" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62086" g_stop="62007" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="199" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62006" i_stop="61130" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61129" g_stop="61015" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="314" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61014" i_stop="60803" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60802" g_stop="60750" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="367" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60749" i_stop="60321" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60320" g_stop="60192" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="496" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60191" i_stop="60112" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60111" g_stop="59981" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="627" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E346129" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63645" e_stop="63598"/>
          <exon e_start="62334" e_stop="62264"/>
          <exon e_start="62086" e_stop="62007"/>
          <exon e_start="61129" e_stop="61015"/>
          <exon e_start="60802" e_stop="60750"/>
          <exon e_start="60320" e_stop="60192"/>
          <exon e_start="60111" e_stop="59981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</genome_strand>
        <mrna_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAAGAGAGTTCAGTGGGACAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E336257" ref_strand="+" ref_description="SGN-E336257 	[cTOE-10-F18]">
      <seq>taattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="62634" stop="59745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62334" g_stop="62264" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="73" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62263" i_stop="62087" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62086" g_stop="62007" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="153" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62006" i_stop="61130" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61129" g_stop="61015" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="268" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61014" i_stop="60803" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60802" g_stop="60750" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60749" i_stop="60321" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60320" g_stop="60192" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="450" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60191" i_stop="60112" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60111" g_stop="60045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="517" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E336257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62334" e_stop="62264"/>
          <exon e_start="62086" e_stop="62007"/>
          <exon e_start="61129" e_stop="61015"/>
          <exon e_start="60802" e_stop="60750"/>
          <exon e_start="60320" e_stop="60192"/>
          <exon e_start="60111" e_stop="60045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</genome_strand>
        <mrna_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E357429" ref_strand="+" ref_description="SGN-E357429 	[cTOS-23-P16]">
      <seq>atttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggttcttgctttgtatctcatttgtgtcgntttaatctttatgttagttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67653" stop="64227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67353" g_stop="67210" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="64961" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64960" g_stop="64521" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="584" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E357429" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67353" e_stop="67210"/>
          <exon e_start="64960" e_stop="64521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</genome_strand>
        <mrna_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGNTTTAATCTTTATGTTAGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E357911" ref_strand="+" ref_description="SGN-E357911 	[cTOS-24-P1]">
      <seq>aatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagagggaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggtcttgctttgtatctcatttgtgtcgttttaatcttttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67654" stop="64236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67354" g_stop="67210" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="64961" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64960" g_stop="64535" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="571" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E357911" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67354" e_stop="67210"/>
          <exon e_start="64960" e_stop="64535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATC-TTTATGTT</genome_strand>
        <mrna_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGGAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG-TCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E370630" ref_strand="+" ref_description="SGN-E370630 	[TUS-27-E18]">
      <seq>tttttttttactaacaagaccccataaattttgaaaaatacataaacattatcattatgttatcactctgttattactttttcctctacattttctttcttatgtgattggggtggcaaagacagccatgtaaagaaactgcatcctaacaggatatggaatcattttttcccagcaaaaaatcaacttatgacagactaatgagggagtcgtttggtagtcattcattcattcatccaacgcgcttgaaattatctccatagtaatatgctgaaccaaccatcaatgcgactgtaccaccttgaacaagaactctagctctcattagttgctgacctaattgacaatttccccgcttgaaactaatgagtccggcagagagcactcctgcagtgagaaatgcacctgaaatttcgcaaagtcataaattgcacaaacagaatatgagttgaaagtgttcaaagacaatttatccaaaaaattgaaacagtggaggatcaaccgggattgggaagattaacatgaacgatatctcacaggaaagtaaggcagcacaaaatgcatcacttctcaagaattcataacagaagaccaaatgacctcgccttataatcataaacatatacgaacactccatacagttaatcagacaaggttttgcaaagttgcattattgctttttctggaaataggagaagttggttatcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="64265" stop="65567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64572" g_stop="65267" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="712" r_length="698" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E370630" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64572" e_stop="65267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCCATAAATTTTGAAAAATACATAAACATTAGCATTATGTT-TCACTCTGTTATTACTTTTTCCTCTA-ATTTTCTTTCTTATGTGATTGGGGTGGCAATGACAGCCATGTAAAGAAACTGCATCCTAGCAAGATATGGAATCATTTTTTCCCAGCAGAAAATCAACTCATGACAGACGAATGAGGGAGTCGTTTGGTAGTCAGTCAGTCAGTCATCCAGCGCGCTTGAAATTATCTCCATAGTAATATGCTGAACCAACCATCAGTGCGACTGTACCACCTTGAACAAGAACTCTAGCTCTCATTAGTTGCTGACCTAATTGAGAATTTCCCCGCTTGAAACTAATGAGTCCGGCAGTGAGCACTCCTGCAGTGAGAAATGCACCTGAAATTTCGCAAAGTCATAAATTGCACAAACAGAATATGAGTTGAGAGTGTTCAGAGACAATTTAGCCAAAAAATTGAAACAGTGGAGGATCAACCGGGATTGGGAAGATTAACATGAACGATATCTCACAGGAAAGTAAGGCAGCAGAAAATGCATCACTTCTCAAGAATTCATAACAGAAGACCAAATGACCTCGCCTTATAATCATAAACATATACGAACACTCCATACAGTTAATCAGACAAGGTTTTGCAAAGTTGCATTATTGCTTTTTCTGGAAATAGGAGAAGTTGGTTATCACATT</genome_strand>
        <mrna_strand>CAAGACCCCATAAATTTTGAAAAATACATAAACATTATCATTATGTTATCACTCTGTTATTACTTTTTCCTCTACATTTTCTTTCTTATGTGATTGGGGTGGCAAAGACAGCCATGTAAAGAAACTGCATCCTAACAGGATATGGAATCATTTTTTCCCAGCAAAAAATCAACTTATGACAGACTAATGAGGGAGTCGTTTGGTAGTCATTCATTCATTCATCCAACGCGCTTGAAATTATCTCCATAGTAATATGCTGAACCAACCATCAATGCGACTGTACCACCTTGAACAAGAACTCTAGCTCTCATTAGTTGCTGACCTAATTGACAATTTCCCCGCTTGAAACTAATGAGTCCGGCAGAGAGCACTCCTGCAGTGAGAAATGCACCTGAAATTTCGCAAAGTCATAAATTGCACAAACAGAATATGAGTTGAAAGTGTTCAAAGACAATTTATCCAAAAAATTGAAACAGTGGAGGATCAACCGGGATTGGGAAGATTAACATGAACGATATCTCACAGGAAAGTAAGGCAGCACAAAATGCATCACTTCTCAAGAATTCATAACAGAAGACCAAATGACCTCGCCTTATAATCATAAACATATACGAACACTCCATACAGTTAATCAGACAAGGTTTTGCAAAGTTGCATTATTGCTTTTTCTGGAAATAGGAGAAGTTGGTTATCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E357275" ref_strand="+" ref_description="SGN-E357275 	[cTOS-23-E11]">
      <seq>ggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67683" stop="64286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67383" g_stop="67210" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="64961" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64960" g_stop="64579" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="556" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E357275" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67383" e_stop="67210"/>
          <exon e_start="64960" e_stop="64579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGG</genome_strand>
        <mrna_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E352294" ref_strand="+" ref_description="SGN-E352294 	[cTOS-9-G11]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="65658" stop="64373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65358" g_stop="64673" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E352294" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65358" e_stop="64673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGG-AAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E354175" ref_strand="+" ref_description="SGN-E354175 	[cTOS-16-E9]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="65658" stop="64481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65358" g_stop="64781" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E354175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65358" e_stop="64781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E260983" ref_strand="+" ref_description="SGN-E260983 	[cLEG-55-P12]">
      <seq>tggaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactggtttcattttttggctaaattgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67704" stop="64715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67404" g_stop="67210" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65015" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="800" r_length="605" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E260983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67404" e_stop="67210"/>
          <exon e_start="65619" e_stop="65015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTG</genome_strand>
        <mrna_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGGTTTCATTTTTTGGCTAAATTGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E370631" ref_strand="+" ref_description="SGN-E370631 	[TUS-27-E18]">
      <seq>gtatacacaaagagaagagaagaggaacgacaacaaatacatcgaagaaaatatatgggatcgactgattcagaattggattcagtttttcaggataacaagcgtaatcgtaatcgtcttagttccgatcggaggctcagccggtacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtaataccatggctctaccacaaggcattaagcttacaattgaacgcaacaactctttttcaagtttcctcgttcatttgctccccaccttactaagtttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagagaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67635" stop="64774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67335" g_stop="67210" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65074" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="678" r_length="547" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E370631" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67335" e_stop="67210"/>
          <exon e_start="65619" e_stop="65074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GT-TACACAAAGAGAAGAGAAGAAGAACGAAAACAAATA-A-CGAAGAAAAT-TATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTT-GTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAAC-CAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</genome_strand>
        <mrna_strand>GTATACACAAAGAGAAGAGAAGAGGAACGACAACAAATACATCGAAGAAAATATATGGGATCGACTGATTCAGAATTGGATTCAGTTTTTCAGGATAACAAGCGTAATCGTAATCGTCTTAGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTCAGCCGGTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAATACCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACGCAACAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTACTAAGTTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAGAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E322323" ref_strand="+" ref_description="SGN-E322323 	[cTOB-24-G10]">
      <seq>cggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67684" stop="64795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67384" g_stop="67210" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65095" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="700" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E322323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67384" e_stop="67210"/>
          <exon e_start="65619" e_stop="65095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</genome_strand>
        <mrna_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E329869" ref_strand="+" ref_description="SGN-E329869 	[cTOD-3-F14]">
      <seq>ccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="65910" stop="64809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65610" g_stop="65109" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E329869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65610" e_stop="65109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</genome_strand>
        <mrna_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E339659" ref_strand="+" ref_description="SGN-E339659 	[cTOE-16-E9]">
      <seq>ttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67666" stop="64865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67366" g_stop="67210" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65165" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="612" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E339659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67366" e_stop="67210"/>
          <exon e_start="65619" e_stop="65165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</genome_strand>
        <mrna_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E261534" ref_strand="+" ref_description="SGN-E261534 	[cLEG-57-I8]">
      <seq>gaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67702" stop="64868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67402" g_stop="67210" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65168" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="645" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E261534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67402" e_stop="67210"/>
          <exon e_start="65619" e_stop="65168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</genome_strand>
        <mrna_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E300076" ref_strand="+" ref_description="SGN-E300076 	[cLEW-11-C4]">
      <seq>aattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67589" stop="64869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67289" g_stop="67210" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65169" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="531" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E300076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67289" e_stop="67210"/>
          <exon e_start="65619" e_stop="65169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</genome_strand>
        <mrna_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E270331" ref_strand="+" ref_description="SGN-E270331 	[cLEM-1-C13]">
      <seq>gaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="67644" stop="65131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67344" g_stop="67210" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65619" g_stop="65431" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="324" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E270331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67344" e_stop="67210"/>
          <exon e_start="65619" e_stop="65431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</genome_strand>
        <mrna_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E231470" ref_strand="+" ref_description="SGN-E231470 	[cLED-4-E20]">
      <seq>tttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattgtttnttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="72103" stop="70993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71803" g_stop="71288" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E231470" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71803" e_stop="71288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</genome_strand>
        <mrna_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTNTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E289906" ref_strand="+" ref_description="SGN-E289906 	[cLET-9-I24]">
      <seq>tcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattggtttttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="71916" stop="70993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71616" g_stop="71294" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E289906" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71616" e_stop="71294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</genome_strand>
        <mrna_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGGTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E395940" ref_strand="+" ref_description="SGN-E395940 	[TUS-18-L1]">
      <seq>ttttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcatcatgaataccgtccagagtgtgtctgatcctctaaaagctatgcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="72104" stop="71218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71804" g_stop="71518" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E395940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71804" e_stop="71518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAA</genome_strand>
        <mrna_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCATCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E212243" ref_strand="+" ref_description="SGN-E212243 	[cLEC-75-D23]">
      <seq>ttctgttgcttcacttctttcacttcaatctttctccattaatggtgattttgctgtaacaagaaaatatgttcagattatctgtagttatcccttttcttactcttctcatttctgttcttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtcttggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagatttgaagttttccccaatttgggagaagttcttcaatggtactaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttaaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatttcgctcttatctcacaacattgtatacctttacactcttttaattacttttacaattttttacttgatacccagaaattgtcgaggaaaatggagttccctagttatattgagattnctgatgaatctgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="74566" stop="73264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74266" g_stop="73564" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E212243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74266" e_stop="73564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</genome_strand>
        <mrna_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTNCTGATGAATCTGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E298204" ref_strand="+" ref_description="SGN-E298204 	[cLEW-9-M23]">
      <seq>atcccttgacttactcttctcatttctgcacttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtctaggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagattggaagttttccccaatttgggagaagttcttcaatggtgctaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttcaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatatcggtcttatctcacaacattgtatacctttacactcttttaattactttcacaattttttacttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="74477" stop="73333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74177" g_stop="73633" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E298204" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74177" e_stop="73633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATAC</genome_strand>
        <mrna_strand>ATCCCTTGACTTACTCTTCTCATTTCTGCACTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTAGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTGGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTGCTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTCAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATATCGGTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTCACAATTTTTTACTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E375374" ref_strand="+" ref_description="SGN-E375374 	[TUS-15-D14]">
      <seq>tttttttttggtctacaatctctagattaatgaatgaatcctacattcagatcttgtacaacacacaacaaagaaattggcaatcaaactcaccaaattccccagttttcagctcaagaaaagtggcacaaaaagcaaattcatcctcttttttacactgggagggaggaggggtaaagaaaacaacgcgctattatataaattacacgaattatgacaagaattgaaacaaatgcgaagatgttattcaggagatggcagcaagcctatctccttttaactctgccgtggacaacataccatcactcccctttaagaaggttccctgtatttacaagcaagggtgacacttggttctgagatcgggatcttcaacgagtacctaaaaactaatcagcagcctgttgtgaaacagttgctgtagacttggtatcagtttcgtttaatttggacttctccttcaaaggcttctgcgtactagatgtccttttgatggttctgcttggctgtctcgctgtttgaggtgcaagaccgctaccaggcaaagacaatctttgtttttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="76686" stop="77822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76980" g_stop="77504" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E375374" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76980" e_stop="77504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATATGGTCTACAATCTCTAGATTAATGAATGAATCCTACATTCAGATCTTGTACAACACACAACAAAGAAATTGGCAATCAAACTCACCAAATTCCCCAGTTTTCAGCTCAAGAAAAGTGGCACAAAAAGCAAATTCATCCTCTTTTTTACACTGGGAGGGAGGAGGGGTAAAGAAAACAACGCGCTATTATATAAATTACACGAATTATGACAAGAATTGAAACAAATGCGAAGATGTTATTCAGGAGATGGCAGCAAGCCTATCTCCTTTTAACTCTGCCGTGGACAACATACCATCACTCCCCTTTAAGAAGGTTCCCTGTATTTACAAGCAAGGGTGACACTTGGTTCTGAGATCGGGATCTTCAACGAGTACCTAAAAACTAATCAGCAGCCTGTTGTGAAACAGTTGCTGTAGACTTGGTATCAGTTTCGTTTAATTTGGACTTCTCCTTCAAAGGCTTCTGCGTACTAGATGTCCTTTTGATGGTTCTGCTTGGTTGTCTCGCTGTTTGAGGT</genome_strand>
        <mrna_strand>TTTTTTTTTGGTCTACAATCTCTAGATTAATGAATGAATCCTACATTCAGATCTTGTACAACACACAACAAAGAAATTGGCAATCAAACTCACCAAATTCCCCAGTTTTCAGCTCAAGAAAAGTGGCACAAAAAGCAAATTCATCCTCTTTTTTACACTGGGAGGGAGGAGGGGTAAAGAAAACAACGCGCTATTATATAAATTACACGAATTATGACAAGAATTGAAACAAATGCGAAGATGTTATTCAGGAGATGGCAGCAAGCCTATCTCCTTTTAACTCTGCCGTGGACAACATACCATCACTCCCCTTTAAGAAGGTTCCCTGTATTTACAAGCAAGGGTGACACTTGGTTCTGAGATCGGGATCTTCAACGAGTACCTAAAAACTAATCAGCAGCCTGTTGTGAAACAGTTGCTGTAGACTTGGTATCAGTTTCGTTTAATTTGGACTTCTCCTTCAAAGGCTTCTGCGTACTAGATGTCCTTTTGATGGTTCTGCTTGGCTGTCTCGCTGTTTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E375375" ref_strand="+" ref_description="SGN-E375375 	[TUS-15-D14]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="80194" stop="77800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79889" g_stop="79776" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79775" i_stop="78591" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78590" g_stop="78100" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="614" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E375375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79889" e_stop="79776"/>
          <exon e_start="78590" e_stop="78100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E204215" ref_strand="+" ref_description="SGN-E204215 	[cLEC-13-B17]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctcaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcacgctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccatgtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcagaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccacaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="80194" stop="77896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79889" g_stop="79776" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79775" i_stop="78591" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78590" g_stop="78196" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="518" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E204215" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79889" e_stop="79776"/>
          <exon e_start="78590" e_stop="78196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTCAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCACGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCATGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAGAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCACAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E281205" ref_strand="+" ref_description="SGN-E281205 	[cLEL-1-C9]">
      <seq>gcacgagtcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaggggaaagagtgataacacaaagttttacgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="88999" stop="90839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89292" g_stop="89488" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89489" i_stop="90434" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90435" g_stop="90539" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="302" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E281205" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89292" e_stop="89488"/>
          <exon e_start="90435" e_stop="90539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</genome_strand>
        <mrna_strand>GCACGAGTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAGGGGAAAGAGTGATAACACAAAGTTTTACGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E333652" ref_strand="+" ref_description="SGN-E333652 	[cTOD-22-D16]">
      <seq>ttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagaccttttggaggtggtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="88993" stop="90902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89293" g_stop="89488" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89489" i_stop="90434" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90435" g_stop="90600" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="363" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E333652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89293" e_stop="89488"/>
          <exon e_start="90435" e_stop="90600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAA-GAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGACCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E200287" ref_strand="+" ref_description="SGN-E200287 	[cLEC-12-H2]">
      <seq>tcttttcatactggtcttgaaaagaagttgaaattgacaaggatgtttggaagaggagggaaaaaaaagagtgataccacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaggatgaaatcaagaaagcttatagaaaaactgctatgaagaatcaccctgataagggcggtgatcctgaaaaggttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaacgaaggaatgggtggtggtggtggcacacatgatccattggacctctttaattcctactttagtggaagtccttttggaggtggcggtcgtacaggacaaagagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="88994" stop="90902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89294" g_stop="89488" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89489" i_stop="90434" i_length="946">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90435" g_stop="90600" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="361" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E200287" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89294" e_stop="89488"/>
          <exon e_start="90435" e_stop="90600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TCTTTTCATACTGGTCTTGAAAAGAAGTTGAAATTGACAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATACCACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAGGATGAAATCAAGAAAGCTTATAGAAAAACTGCTATGAAGAATCACCCTGATAAGGGCGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAACGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTGGACCTCTTTAATTCCTACTTTAGTGGAAGTCCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E207573" ref_strand="+" ref_description="SGN-E207573 	[cLEC-32-G9]">
      <seq>tccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgtttgaggacctattcaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="90254" stop="91811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90554" g_stop="90600" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90601" i_stop="90928" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90929" g_stop="91067" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="186" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91068" i_stop="91262" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91263" g_stop="91511" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="435" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E207573" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90554" e_stop="90600"/>
          <exon e_start="90929" e_stop="91067"/>
          <exon e_start="91263" e_stop="91511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</genome_strand>
        <mrna_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGTTTGAGGACCTATTCAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E395588" ref_strand="+" ref_description="SGN-E395588 	[TUS-16-F12]">
      <seq>cttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="90275" stop="92134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90575" g_stop="90600" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90601" i_stop="90928" i_length="328">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90929" g_stop="91067" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="165" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91068" i_stop="91262" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91263" g_stop="91539" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="442" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91708" g_stop="91834" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="569" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E395588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90575" e_stop="90600"/>
          <exon e_start="90929" e_stop="91067"/>
          <exon e_start="91263" e_stop="91539"/>
          <exon e_start="91708" e_stop="91834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</genome_strand>
        <mrna_strand>CTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E273415" ref_strand="+" ref_description="SGN-E273415 	[cLEN-3-E8]">
      <seq>agaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaagcactgtgtggtttccagttcatattggcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="90722" stop="92151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91022" g_stop="91067" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91068" i_stop="91262" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91263" g_stop="91539" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="323" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91708" g_stop="91851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="467" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E273415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91022" e_stop="91067"/>
          <exon e_start="91263" e_stop="91539"/>
          <exon e_start="91708" e_stop="91851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</genome_strand>
        <mrna_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAAGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E235856" ref_strand="+" ref_description="SGN-E235856 	[cLED-15-J10]">
      <seq>ggagatgaaaggatctcctgatatagagaagtgagatttcaatgcaagtgctcaaatgttctcttacgttgtattgtattggtttgtttctgtaactgcagcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcanaatggacagaaaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="90862" stop="91815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91162" g_stop="91515" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E235856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91162" e_stop="91515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACA</genome_strand>
        <mrna_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCANAATGGACAGAAAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E250797" ref_strand="+" ref_description="SGN-E250797 	[cLEG-13-C3]">
      <seq>ttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91026" stop="92534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91326" g_stop="91539" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91708" g_stop="91906" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="413" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92021" g_stop="92234" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="627" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E250797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91326" e_stop="91539"/>
          <exon e_start="91708" e_stop="91906"/>
          <exon e_start="92021" e_stop="92234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</genome_strand>
        <mrna_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E250880" ref_strand="+" ref_description="SGN-E250880 	[cLEG-13-C15]">
      <seq>aatcagacagcttgggcctgtaatgatccagcaaatgcagcagccttgtaatgaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaaatccatgttgaaaaaggaatgcataatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgatgcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaatgaatgccagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91029" stop="92359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91329" g_stop="91539" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91708" g_stop="91906" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="410" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92021" g_stop="92059" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="449" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E250880" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91329" e_stop="91539"/>
          <exon e_start="91708" e_stop="91906"/>
          <exon e_start="92021" e_stop="92059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTT</genome_strand>
        <mrna_strand>AATCAGACAGCTTGGGCCTGTAATGATCCAGCAAATGCAGCAGCCTTGTAATGAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAATCCATGTTGAAAAAGGAATGCATAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGATGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAATGAATGCCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E395587" ref_strand="-" ref_description="SGN-E395587 	[TUS-16-F12]">
      <seq>tcaagaggaagggtgaggacctgtttgttgatcacacattgcccttaaatgaggcactgtgtggtttccagttcatattggcacacttggatggcagacgggtccttgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcattgtggaatttccggatttgttgagcctgccacaggtgcaggttttggaggcaatgttaccatcaaggcctacatcacagtactttgacatggaactggatgaatgtgaggggaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtttggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttttgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattatttttttggggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91466" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91766" g_stop="91906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="605" r_length="464" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E395587" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91766" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCAAGAGGAAGGGTGAGGACCTGTTTGTTGATCACACATTGCCCTTAAATGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGGTCCTTGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATTGTGGAATTTCCGGATTTGTTGAGCCTGCCACAGGTGCAGGTTTTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTTTGACATGGAACTGGATGAATGTGAGGGGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTTTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTTTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTTTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E244147" ref_strand="+" ref_description="SGN-E244147 	[cLEE-1-G14]">
      <seq>tccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91532" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91832" g_stop="91906" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="539" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E244147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91832" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E351789" ref_strand="+" ref_description="SGN-E351789 	[cTOS-8-P2]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91563" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91863" g_stop="91906" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E351789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91863" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E353363" ref_strand="+" ref_description="SGN-E353363 	[cTOS-15-I18]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91563" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91863" g_stop="91906" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E353363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91863" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E356921" ref_strand="+" ref_description="SGN-E356921 	[cTOS-22-J15]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91563" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91863" g_stop="91906" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E356921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91863" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E208145" ref_strand="-" ref_description="SGN-E208145 	[cLEC-34-P8]">
      <seq>taaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91574" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91874" g_stop="91906" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="497" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="515"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E208145" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208145" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91874" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E251569" ref_strand="-" ref_description="SGN-E251569 	[cLEG-9-D17]">
      <seq>agttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaacaaactgatgctttagtgaaacagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="+" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="91718" stop="92785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91893" g_stop="91906" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92021" g_stop="92484" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="478" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="502"/>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="+" ref_id="SGN-E251569" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91893" e_stop="91906"/>
          <exon e_start="92021" e_stop="92484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>AGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAACAAACTGATGCTTTAGTGAAACAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E323132" ref_strand="+" ref_description="SGN-E323132 	[cTOB-28-L23]">
      <seq>aacacctttctgaccctctgatgactccactaaactggagaataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtcacacaacttagtctgtaagtagtctgctgcgttttgacattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="94238" stop="92489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94041" g_stop="94030" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94029" i_stop="93932" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93931" g_stop="93864" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="80" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93863" i_stop="93616" i_length="248">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93615" g_stop="93526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="170" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93525" i_stop="93404" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93403" g_stop="93334" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="240" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93333" i_stop="93250" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93249" g_stop="92788" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="701" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E323132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94041" e_stop="94030"/>
          <exon e_start="93931" e_stop="93864"/>
          <exon e_start="93615" e_stop="93526"/>
          <exon e_start="93403" e_stop="93334"/>
          <exon e_start="93249" e_stop="92788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATT</genome_strand>
        <mrna_strand>AACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGT-CACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-wUtyKx/sgn_ests_tomato" ref_id="SGN-E330492" ref_strand="+" ref_description="SGN-E330492 	[cTOD-4-H20]">
      <seq>ttaatagtagagccaaaaaaagtttcaatttacttgagataaagaaagcatatattcgattattaaagtcagaagcaacaatgggtcatcatcatcatcagttaaccgacccacttgtcactctttgtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaattaggcttcttattcttgcttgggtgcatttcagatctcattcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtttacaactcttccaaaatagttgcttacagagcaaagtttcaaaatggccatgctgcgtttgtgaaagaagtccgaggtttcgaagatgaggatgatacggccttctacagggaggtacagttactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcggccctaagaggttcctagtctttgaaaatatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-4MpBo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0089M02.1" temp_strand="-" temp_description="C11HBa0089M02.1  AC212433.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0089M02 sequenced_by:ivf-caas">
        <position start="98241" stop="93754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97941" g_stop="97694" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97693" i_stop="95924" i_length="1770">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95923" g_stop="95665" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="507" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95664" i_stop="94083" i_length="1582">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94082" g_stop="94054" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.1" gen_strand="-" ref_id="SGN-E330492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97941" e_stop="97694"/>
          <exon e_start="95923" e_stop="95665"/>
          <exon e_start="94082" e_stop="94054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCTTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTTGAAAATATGGAAAAAG</genome_strand>
        <mrna_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGTCTTTGAAAATATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>70</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16418" PGL_stop="23014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16418" e_stop="16547"/>
            <exon e_start="17535" e_stop="17625"/>
            <exon e_start="17715" e_stop="17775"/>
            <exon e_start="19448" e_stop="19525"/>
            <exon e_start="20550" e_stop="20623"/>
            <exon e_start="21043" e_stop="21156"/>
            <exon e_start="21234" e_stop="21341"/>
            <exon e_start="22482" e_stop="22520"/>
            <exon e_start="22643" e_stop="23014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16418" e_stop="16547" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="16548" i_stop="17534" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17535" e_stop="17625" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17626" i_stop="17714" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17715" e_stop="17775" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17776" i_stop="19447" i_length="1672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19448" e_stop="19525" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19526" i_stop="20549" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20550" e_stop="20623" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21043" e_stop="21156" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21157" i_stop="21233" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21234" e_stop="21341" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22482" e_stop="22520" e_length="39"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="22643" e_stop="23014" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16418" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19525"/>
              <exon start="20550" stop="20623"/>
              <exon start="21043" stop="21156"/>
              <exon start="21234" stop="21341"/>
              <exon start="22482" stop="22517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16418" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16419" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19525"/>
              <exon start="20550" stop="20620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16426" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19525"/>
              <exon start="20550" stop="20591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16428" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16430" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19525"/>
              <exon start="20550" stop="20623"/>
              <exon start="21043" stop="21093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16441" stop="16547"/>
              <exon start="17535" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17591" stop="17625"/>
              <exon start="17715" stop="17775"/>
              <exon start="19448" stop="19525"/>
              <exon start="20550" stop="20623"/>
              <exon start="21043" stop="21156"/>
              <exon start="21234" stop="21341"/>
              <exon start="22482" stop="22520"/>
              <exon start="22643" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21253" stop="21341"/>
              <exon start="22482" stop="22520"/>
              <exon start="22643" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302708" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG : GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG : TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG : CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG : AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG : GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> F  Q  W  E  T  T  A  I  Q  P  P  H  R  R  R  R  K  S  P  P  R  K  M  R  Y  *  S  N  S  S  L  R  S  V  K  L  S  A  I  M  K  L  T   : G  S  F  H  V  S  S  *  I  H  L  I  I  L  T  C  H  S  I  H  P  L  M  K  S  K  D  S  I  V  S :   Y  L  C  L  F  T  L  T  S  A  S  I  H  K  Q  R  R  H  L  A  :  L  *  Q  K  P  S  N  Y  Y  L  T  L  R  R  G  I  I  F  *  T  R  L  M  Q  Q  K  :  K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R :   E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </first_frame>
            <second_frame>  F  N  G  R  Q  Q  R  Y  S  H  R  T  V  A  G  E  N  R  R  P  G  R  C  A  T  E  A  I  L  R  *  G  Q  *  S  *  A  R  *  *  S  *  Q  :  D  P  F  M  F  Q  V  E  S  I  *  L  S  *  L  V  I  R  F  I  H  *  *  S  Q  K  T  V  S  *   : V  I  F  A  C  S  P  *  Q  V  Q  A  S  T  S  K  G  G  I  W  R :   F  S  K  S  P  A  I  I  T  *  P  S  G  E  G  L  Y  S  E  P  G  *  C  S  K  R :   R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *   : G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </second_frame>
            <third_frame>   S  M  G  D  N  S  D  T  A  T  A  P  S  P  A  K  I  A  A  Q  E  D  A  L  L  K  Q  F  F  A  E  V  S  E  V  E  R  D  N  E  V  N  R :   I  L  S  C  F  K  L  N  P  F  D  Y  L  N  L  S  F  D  S  S  I  D  E  V  K  R  Q  Y  R  K  :  L  S  L  L  V  H  P  D  K  C  K  H  P  Q  A  K  E  A  F  G   : A  L  A  K  A  Q  Q  L  L  L  D  P  Q  E  R  D  Y  I  L  N  Q  V  N  A  A  K   : E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  :  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16420" stop="16547"/>
                    <exon start="17535" stop="17625"/>
                    <exon start="17715" stop="17775"/>
                    <exon start="19448" stop="19525"/>
                    <exon start="20550" stop="20623"/>
                    <exon start="21043" stop="21156"/>
                    <exon start="21234" stop="21341"/>
                    <exon start="22482" stop="22520"/>
                    <exon start="22643" stop="22729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGDNSDTATAPSPAKIAAQEDALLKQFFAEVSEVERDNEVNRILSCFKLNPFDYLNLSFDSSIDEVKRQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLDPQERDYILNQVNAAKEELRAQWKKQLKKDTASKLKSLVTEGKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22176" e_stop="22520"/>
            <exon e_start="22643" e_stop="23000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22176" e_stop="22520" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="22643" e_stop="23000" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22176" stop="22520"/>
              <exon start="22643" stop="23000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22176" stop="22520"/>
              <exon start="22643" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCC</gDNA_template>
            <first_frame> G  F  V  P  T  A  A  Q  D  S  L  N  G  D  V  F  S  T  R  T  F  S  I  F  R  S  Q  C  *  D  F  W  L  K  M  E  E  F  *  P  S  D  H  N  P  G  *  Q  T  *  *  Y  Y  *  T  *  G  L  Q  N  M  I  I  V  M  N  L  I  F  M  M  I  *  N  C  K  V  E  D  N  R  H  V  P  K  S  R  L  T  E  L  S  F  *  N  F  S  S  I  S  H  Q  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  </first_frame>
            <second_frame>  D  L  C  Q  L  L  R  K  I  H  *  M  E  M  C  S  L  P  E  L  F  P  F  S  G  L  N  A  E  T  S  G  *  R  W  R  N  S  N  H  P  T  T  I  P  G  D  K  H  D  N  I  I  E  P  K  V  F  R  T  *  *  L  L  *  T  *  S  S  *  *  Y  E  I  V  K  L  K  T  T  D  M  F  Q  N  L  D  L  L  N  *  V  S  K  T  F  L  L  F  L  I  R  C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P </second_frame>
            <third_frame>   I  C  A  N  C  C  A  R  F  I  K  W  R  C  V  L  Y  Q  N  F  F  H  F  Q  V  S  M  L  R  L  L  V  K  D  G  G  I  L  T  I  R  P  Q  S  R  V  T  N  M  I  I  L  L  N  L  R  S  S  E  H  D  N  C  Y  E  P  N  L  H  D  D  M  K  L  *  S  *  R  Q  P  T  C  S  K  I  *  T  Y  *  I  E  F  L  K  L  F  F  Y  F  S  S  G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22178" stop="22402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICANCCARFIKWRCVLYQNFFHFQVSMLRLLVKDGGILTIRPQSRVTNMIILLNLRSSEHDNCYEPNLHDDMKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20548" e_stop="20623"/>
            <exon e_start="21043" e_stop="21156"/>
            <exon e_start="21234" e_stop="21341"/>
            <exon e_start="22482" e_stop="22520"/>
            <exon e_start="22643" e_stop="23014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20548" e_stop="20623" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20624" i_stop="21042" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21043" e_stop="21156" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21157" i_stop="21233" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21234" e_stop="21341" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21342" i_stop="22481" i_length="1140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22482" e_stop="22520" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="22521" i_stop="22642" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="22643" e_stop="23014" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20548" stop="20623"/>
              <exon start="21043" stop="21156"/>
              <exon start="21234" stop="21341"/>
              <exon start="22482" stop="22520"/>
              <exon start="22643" stop="22839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21253" stop="21341"/>
              <exon start="22482" stop="22520"/>
              <exon start="22643" stop="23014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302708" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG : GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> R  R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *   : G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </first_frame>
            <second_frame>  E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  :  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </second_frame>
            <third_frame>   K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R :   E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20549" stop="20623"/>
                    <exon start="21043" stop="21156"/>
                    <exon start="21234" stop="21341"/>
                    <exon start="22482" stop="22520"/>
                    <exon start="22643" stop="22729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELRAQWKKQLKKDTASKLKSLVTEGKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27758" PGL_stop="23667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27758" e_stop="27685"/>
            <exon e_start="25866" e_stop="25782"/>
            <exon e_start="25696" e_stop="25598"/>
            <exon e_start="25521" e_stop="25322"/>
            <exon e_start="25245" e_stop="25170"/>
            <exon e_start="24532" e_stop="24397"/>
            <exon e_start="24307" e_stop="24171"/>
            <exon e_start="24089" e_stop="23667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27758" e_stop="27685" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27684" i_stop="25867" i_length="1818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25866" e_stop="25782" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.823">
            <gDNA_intron_boundary i_start="25781" i_stop="25697" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25696" e_stop="25598" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.892">
            <gDNA_intron_boundary i_start="25597" i_stop="25522" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25521" e_stop="25322" e_length="200"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25321" i_stop="25246" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25245" e_stop="25170" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="25169" i_stop="24533" i_length="637"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24532" e_stop="24397" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.904">
            <gDNA_intron_boundary i_start="24396" i_stop="24308" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24307" e_stop="24171" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24170" i_stop="24090" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="24089" e_stop="23667" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27685"/>
              <exon start="25866" stop="25782"/>
              <exon start="25696" stop="25598"/>
              <exon start="25521" stop="25322"/>
              <exon start="25245" stop="25170"/>
              <exon start="24532" stop="24457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25843" stop="25782"/>
              <exon start="25696" stop="25598"/>
              <exon start="25521" stop="25322"/>
              <exon start="25245" stop="25170"/>
              <exon start="24532" stop="24397"/>
              <exon start="24307" stop="24290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25515" stop="25322"/>
              <exon start="25245" stop="25170"/>
              <exon start="24532" stop="24397"/>
              <exon start="24307" stop="24236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="25322"/>
              <exon start="25245" stop="25170"/>
              <exon start="24532" stop="24397"/>
              <exon start="24307" stop="24171"/>
              <exon start="24089" stop="23792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25330" stop="25322"/>
              <exon start="25245" stop="25170"/>
              <exon start="24532" stop="24397"/>
              <exon start="24307" stop="24171"/>
              <exon start="24089" stop="23902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24264" stop="24171"/>
              <exon start="24089" stop="23667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369786" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC : GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG : GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG : GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG : GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG : CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG : GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG : GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</gDNA_template>
            <first_frame> L  H  G  Q  F  G  D  L  M  R  L  F  D  E  Y  G  S  P  S  T  A  G  D  I  A :   Y  I  D  Y  L  F  L  G  D  Y  V  D  R  G  Q  H  S  L  E  T  I  T  L  L  L  A  L  K  :  V  E  Y  P  Y  N  I  H  L  I  R  G  N  H  E  A  S  D  I  N  A  L  F  G  F  R  I  E  C  I  E  R  L  :  G  E  R  D  G  I  W  A  W  H  R  I  N  R  L  F  N  W  L  P  L  A  A  L  I  E  K  K  I  I  C  M  H  G  G  I  G  R  S  I  N  H  V  E  Q  I  E  S  I  Q  R  P  I  T  M  E  A  G  S  I  V  L  M  D  L  L  W :   S  D  P  T  E  N  D  S  V  E  G  L  R  P  N  A  R  G  P  G  L  V  T  F  G  :  P  D  R  V  M  E  F  C  N  N  N  D  L  Q  L  I  V  R  A  H  E  C  V  M  D  G  F  E  R  F  A  Q  G  H  L  I  T  L  F  S  A  T  N  Y  C   : G  T  A  N  N  A  G  A  I  L  V  L  G  R  D  L  V  V  V  P  K  L  I  H  P  I  P  P  V  S  S  P  E  N  S  P  E  R  H  I  E  D  T  W  M  Q  :  E  L  N  A  N  R  P  P  T  P  T  R  G  R  P  Q  V  A  N  D  R  G  S  F  A  W  T  *  I  L  F  L  Y  F  E  L  H  A  L  N  I  W  D  F  Q  *  Y  V  H  R  H  E  A  I  C  G  D  K  Y  I  P  L  *  R  S  I  R  L  F  E  A  L  S  T  I  H  N  N  S  P  S  D  R  L  Q  A  Q  K  Q  S  K  V  S  H  C  T  L  T  N  K  I  I  S  S  C  I  T  R  S  G  N  K  K  K  K  L  T  V  L  P  L  L  N  Y  F  L  *  K  I  S  *  L  N  N  Y  M  F  L  K  N  L </first_frame>
            <second_frame>  Y  M  G  N  L  G  I  S  C  V  F  L  T  S  M  V  P  R  Q  L  L  G  I  L   : R  I  L  I  T  S  S  W  E  I  M  L  I  G  A  S  T  A  W  R  P  L  P  F  S  L  H  *  R :   S  S  I  L  T  I  Y  I  *  Y  V  G  T  M  K  L  Q  I  *  M  R  S  L  A  F  E  L  S  A  L  N  A  W :   V  R  E  M  E  S  G  H  G  I  G  L  I  D  C  L  T  G  F  L  W  L  P  *  S  R  K  K  S  S  V  C  M  V  G  L  E  G  P  L  I  T  L  S  K  *  R  V  S  S  V  L  S  L  W  K  L  A  Q  S  F  *  W  I  C  C   : G  L  T  Q  Q  K  M  I  V  L  K  D  *  D  Q  M  Q  E  A  L  A  W  *  L  L  G :   P  I  V  *  W  S  F  A  T  T  M  I  F  N  *  *  S  E  P  T  N  A  *  W  M  A  L  K  D  L  L  R  G  I  *  L  R  F  F  Q  P  P  I  T  A  :  V  L  L  T  M  L  V  P  F  *  Y  W  V  E  I  L  L  W  F  Q  N  L  S  T  Q  F  R  Q  F  H  R  L  K  I  H  L  N  G  I  *  K  T  L  G  C  R :   S  *  M  L  T  D  P  L  H  Q  P  E  A  V  P  K  L  R  T  I  E  V  L  L  L  G  L  R  F  F  S  Y  T  L  S  F  M  L  L  T  S  G  I  S  S  D  M  Y  I  G  M  K  P  F  V  E  T  N  I  S  L  F  E  D  L  *  G  F  L  R  H  S  V  Q  Y  T  T  T  A  L  Q  T  D  C  R  H  R  S  S  Q  K  F  P  I  V  H  *  Q  T  K  S  Y  H  H  V  L  L  E  V  G  T  K  K  K  S  *  R  F  Y  P  Y  *  I  I  F  Y  K  K  L  V  N  *  I  I  T  C  F  *  K  I   </second_frame>
            <third_frame>   T  W  A  I  W  G  S  H  A  S  F  *  R  V  W  F  P  V  N  C  W  G  Y  C  :  V  Y  *  L  P  L  L  G  R  L  C  *  *  G  P  A  Q  L  G  D  H  Y  P  S  P  C  I  K   : G  R  V  S  L  Q  Y  T  F  N  T  W  E  P  *  S  F  R  Y  K  C  A  L  W  L  S  N  *  V  H  *  T  P   : G  *  E  R  W  N  L  G  M  A  S  D  *  *  I  V  *  L  A  S  S  G  C  P  D  R  E  K  N  H  L  Y  A  W  W  D  W  K  V  H  *  S  R  *  A  N  R  E  Y  P  A  S  Y  H  Y  G  S  W  L  N  R  S  D  G  F  V  V  :  V  *  P  N  R  K  *  *  C  *  R  T  K  T  K  C  K  R  P  W  L  G  N  F  W   : A  R  S  C  D  G  V  L  Q  Q  Q  *  S  S  T  N  S  P  S  P  R  M  R  D  G  W  L  *  K  I  C  S  G  A  F  D  Y  A  F  F  S  H  Q  L  L  R :   Y  C  *  Q  C  W  C  H  F  S  T  G  *  R  S  C  C  G  S  K  T  Y  P  P  N  S  A  S  F  I  A  *  K  F  T  *  T  A  Y  R  R  H  L  D  A   : G  V  K  C  *  Q  T  P  Y  T  N  Q  R  P  S  P  S  C  E  R  S  R  F  F  C  L  D  L  D  S  F  P  I  L  *  A  S  C  S  *  H  L  G  F  P  V  I  C  T  *  A  *  S  H  L  W  R  Q  I  Y  P  S  L  K  I  Y  K  A  F  *  G  T  Q  Y  N  T  Q  Q  Q  P  F  R  Q  I  A  G  T  E  A  V  K  S  F  P  L  Y  I  D  K  Q  N  H  I  I  M  Y  Y  *  K  W  E  Q  K  K  K  V  N  G  F  T  P  I  K  L  F  F  I  K  N  *  L  I  K  *  L  H  V  S  K  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27758" stop="27685"/>
                    <exon start="25866" stop="25782"/>
                    <exon start="25696" stop="25598"/>
                    <exon start="25521" stop="25322"/>
                    <exon start="25245" stop="25170"/>
                    <exon start="24532" stop="24397"/>
                    <exon start="24307" stop="24171"/>
                    <exon start="24089" stop="24006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPYNIHLIRGNHEASDINALFGFRIECIERLGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIESIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPVSSPENSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSFAWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33363" PGL_stop="32990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33363" e_stop="32990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="33363" e_stop="32990" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33363" stop="32990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTC</gDNA_template>
            <first_frame> S  I  D  M  D  V  D  S  T  M  V  S  E  S  D  H  D  P  T  V  Q  N  D  S  S  T  S  E  Q  Q  L  N  D  E  S  S  T  S  L  Q  Q  Q  S  S  Q  T  Q  Q  Q  Q  Q  Q  S  S  S  S  S  S  V  P  A  V  A  G  P  R  C  A  P  T  Y  S  V  V  H  E  V  I  E  K  K  E  D  G  P  G  P  R  C  G  H  T  L  T  A  V  P  A  V  G  E  E  G  S  P  N  Y  I  G  P  R  L  I  L  F  G  G  A  T  A  L  E  G  N   </first_frame>
            <second_frame>  V  L  I  W  M  W  I  Q  L  W  Y  R  S  P  I  T  I  R  L  F  R  M  I  V  R  R  R  N  N  S  L  M  M  S  L  Q  L  R  C  S  S  K  V  H  K  L  S  N  S  S  S  K  V  V  V  V  V  V  F  L  L  L  R  D  Q  G  V  L  R  R  I  R  W  C  T  K  *  *  R  R  R  K  M  V  Q  G  Q  G  V  G  I  R  *  R  L  Y  Q  L  L  V  K  K  V  L  L  I  I  L  V  Q  G  L  F  F  L  V  V  L  L  L  L  R  E  I  </second_frame>
            <third_frame>   Y  *  Y  G  C  G  F  N  Y  G  I  G  V  R  S  R  S  D  C  S  E  *  *  F  D  V  G  T  T  A  *  *  *  V  F  N  F  V  A  A  A  K  F  T  N  S  A  T  A  A  A  K  *  *  *  *  *  C  S  C  C  C  G  T  K  V  C  S  D  V  F  G  G  A  R  S  D  R  E  E  G  R  W  S  R  A  K  V  W  A  Y  V  N  G  C  T  S  C  W  *  R  R  F  S  *  L  Y  W  S  K  A  Y  S  F  W  W  C  Y  C  S  *  G  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33363" stop="32992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDMDVDSTMVSESDHDPTVQNDSSTSEQQLNDESSTSLQQQSSQTQQQQQQSSSSSSVPAVAGPRCAPTYSVVHEVIEKKEDGPGPRCGHTLTAVPAVGEEGSPNYIGPRLILFGGATALEGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="36300" PGL_stop="35948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36300" e_stop="35948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36300" e_stop="35948" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36300" stop="35948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAG</gDNA_template>
            <first_frame> F  *  G  H  T  V  P  L  V  V  M  L  L  Q  A  D  C  P  M  K  Q  E  Q  H  V  R  C  *  R  I  M  L  M  E  S  C  H  T  L  K  C  L  Q  E  N  Q  T  M  K  L  V  K  R  R  M  K  L  L  Q  R  M  L  I  I  L  *  C  L  V  L  M  R  M  M  T  T  M  R  M  R  M  R  M  R  M  M  K  T  L  M  H  I  *  I  M  F  *  V  I  *  V  R  L  I  W  P  M  D  L  L  L  T  R  Q  L  V  K   </first_frame>
            <second_frame>  F  K  G  I  L  C  L  S  W  L  C  C  F  K  R  I  A  R  *  N  K  S  N  T  S  D  V  E  G  L  C  *  W  K  A  A  T  L  *  N  A  S  R  R  I  R  R  *  S  *  *  R  G  G  *  N  C  Y  R  G  C  *  *  S  Y  N  V  W  F  *  *  G  *  *  R  R  *  G  *  G  *  G  *  G  *  *  R  H  *  C  T  S  R  S  C  S  E  *  F  K  Y  V  *  Y  G  Q  W  T  C  F  *  P  D  S  S  *  K  </second_frame>
            <third_frame>   L  R  A  Y  C  A  S  R  G  Y  V  A  S  S  G  L  P  D  E  T  R  A  T  R  Q  M  L  K  D  Y  V  D  G  K  L  P  H  F  E  M  P  P  G  E  S  D  D  E  A  S  E  E  E  D  E  I  V  T  E  D  A  D  N  P  I  M  S  G  S  D  E  D  D  D  D  D  E  D  E  D  E  D  E  D  D  E  D  I  N  A  H  L  D  H  V  L  S  D  L  S  T  F  D  M  A  N  G  L  A  S  N  Q  T  A  R  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36298" stop="35948"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRAYCASRGYVASSGLPDETRATRQMLKDYVDGKLPHFEMPPGESDDEASEEEDEIVTEDADNPIMSGSDEDDDDDEDEDEDEDDEDINAHLDHVLSDLSTFDMANGLASNQTARKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44889" PGL_stop="36595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39701" e_stop="39611"/>
            <exon e_start="38969" e_stop="38876"/>
            <exon e_start="37467" e_stop="37411"/>
            <exon e_start="37094" e_stop="37015"/>
            <exon e_start="36923" e_stop="36595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="39701" e_stop="39611" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39610" i_stop="38970" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38969" e_stop="38876" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38875" i_stop="37468" i_length="1408"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37467" e_stop="37411" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37410" i_stop="37095" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37094" e_stop="37015" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37014" i_stop="36924" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="36923" e_stop="36595" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39701" stop="39611"/>
              <exon start="38969" stop="38876"/>
              <exon start="37467" stop="37411"/>
              <exon start="37094" stop="37015"/>
              <exon start="36923" stop="36876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39644" stop="39611"/>
              <exon start="38969" stop="38876"/>
              <exon start="37467" stop="37411"/>
              <exon start="37094" stop="37015"/>
              <exon start="36923" stop="36596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37022" stop="37015"/>
              <exon start="36923" stop="36595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG : GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG : CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG : GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG : AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAAC</gDNA_template>
            <first_frame> P  G  P  H  G  I  L  K  C  P  W  K  S  L  I  L  M  K  D  K  L  F  *  L  G  D  A  I  L  Q   : G  L  K  R  T  R  N  W  F  S  P  L  L  K  R  T  W  I  S  G  D  S  F  G  E  L  L  S  V  V  I  C :   L  *  W  L  L  M  H  V  T  H  F  F  I  G  V  L  I  L  R :   L  M  H  *  K  S  T  N  T  K  K  Q  C  F  L  L  T  K  L  I  F  Y  P  F  L  S   : E  R  N  G  L  N  T  S  T  S  K  G  F  F  F  F  S  G  Q  L  K  L  P  L  L  L  S  V  L  Q  K  Y  Q  *  A  L  K  R  Q  V  M  L  I  R  K  Y  *  A  G  R  S  Y  W  P  A  Y  S  L  Q  Q  R  R  *  F  *  L  R  I  G  *  L  L  M  L  M  R  T  W  Q  K  M  F  S  L  E  V  *  W  W  G  L  W  G  I  L  M  L  G  K  V  Q  R  L  M  L  W  *  G  K  N </first_frame>
            <second_frame>  Q  A  P  M  E  Y  *  N  V  R  G  R  A  *  Y  *  *  K  T  S  F  S  S  L  A  T  Q  S  C  K  :  A  *  R  E  R  E  T  G  S  H  P  F  *  K  E  P  G  Y  L  E  T  A  L  E  S  C  *  A  *  *  S   : A  C  N  G  C  *  C  T  *  P  T  F  L  S  V  S  *  S  *   : G  L  C  T  R  S  R  P  T  Q  K  N  N  A  S  C  *  Q  S  *  S  F  T  H  F  Y  Q  :  K  E  M  G  *  I  L  P  P  A  R  D  S  F  S  F  L  V  S  *  S  C  L  C  C  S  Q  C  F  R  S  T  N  E  L  S  R  G  R  *  C  *  Y  E  N  I  R  Q  G  G  A  I  G  P  L  T  V  C  S  R  G  D  S  F  D  *  E  *  V  S  F  *  C  *  *  E  L  G  R  R  C  S  V  *  K  C  D  G  G  V  C  G  V  S  *  C  W  E  K  F  N  D  *  C  F  G  R  G  K   </second_frame>
            <third_frame>   R  P  P  W  N  T  K  M  S  V  E  E  L  D  I  N  E  R  Q  A  F  L  A  W  R  R  N  L  A  R :   L  E  E  N  E  K  L  V  L  T  P  F  E  K  N  L  D  I  W  R  Q  L  W  R  V  V  E  R  S  D  L  :  L  V  M  V  V  D  A  R  D  P  L  F  Y  R  C  P  D  L  E  :  A  Y  A  L  E  V  D  Q  H  K  K  T  M  L  L  V  N  K  A  D  L  L  P  I  S  I  R :   K  K  W  A  E  Y  F  H  Q  Q  G  I  L  F  L  F  W  S  A  K  A  A  S  A  A  L  S  A  S  E  V  P  M  S  S  Q  E  A  G  D  A  D  T  K  I  L  G  R  E  E  L  L  A  R  L  Q  S  A  A  E  E  I  V  L  T  K  N  R  L  A  S  D  A  D  E  N  L  A  E  D  V  Q  S  R  S  V  M  V  G  F  V  G  Y  P  N  V  G  K  S  S  T  I  N  A  L  V  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39699" stop="39611"/>
                    <exon start="38969" stop="38876"/>
                    <exon start="37467" stop="37411"/>
                    <exon start="37094" stop="37015"/>
                    <exon start="36923" stop="36596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPPWNTKMSVEELDINERQAFLAWRRNLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYALEVDQHKKTMLLVNKADLLPISIRKKWAEYFHQQGILFLFWSAKAASAALSASEVPMSSQEAGDADTKILGREELLARLQSAAEEIVLTKNRLASDADENLAEDVQSRSVMVGFVGYPNVGKSSTINALVGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44889" e_stop="44507"/>
            <exon e_start="39874" e_stop="39773"/>
            <exon e_start="39697" e_stop="39611"/>
            <exon e_start="38969" e_stop="38876"/>
            <exon e_start="37467" e_stop="37411"/>
            <exon e_start="37094" e_stop="37015"/>
            <exon e_start="36923" e_stop="36595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44889" e_stop="44507" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="44506" i_stop="39875" i_length="4632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39874" e_stop="39773" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="39772" i_stop="39698" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39697" e_stop="39611" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39610" i_stop="38970" i_length="641"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38969" e_stop="38876" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38875" i_stop="37468" i_length="1408"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37467" e_stop="37411" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37410" i_stop="37095" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37094" e_stop="37015" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37014" i_stop="36924" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="36923" e_stop="36595" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44889" stop="44507"/>
              <exon start="39874" stop="39773"/>
              <exon start="39697" stop="39611"/>
              <exon start="38969" stop="38876"/>
              <exon start="37467" stop="37432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39644" stop="39611"/>
              <exon start="38969" stop="38876"/>
              <exon start="37467" stop="37411"/>
              <exon start="37094" stop="37015"/>
              <exon start="36923" stop="36596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37022" stop="37015"/>
              <exon start="36923" stop="36595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT : GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG : GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG : GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG : CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG : GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG : AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAAC</gDNA_template>
            <first_frame> A  A  P  P  P  P  P  P  T  F  T  A  V  I  Y  H  R  L  R  *  P  K  S  H  N  L  *  I  L  I  *  F  L  *  L  G  F  H  F  F  F  L  L  S  *  L  N  L  K  R  K  G  V  M  G  K  G  E  K  S  S  L  G  R  A  L  V  K  H  H  N  Q  M  I  Q  Q  S  K  D  K  G  R  V  Y  R  N  H  N  K  K  V  L  E  S  V  T  E  V  T  D  L  E  A  V  I  E  Q  T  D  E  A  H  R  L  Y  S  D  L  N  P  P  V  N  L  L  V  N  L :   D  S  G  S  S  S  G  D  M  R  P  E  E  R  L  K  Q  Q  K  K  E  E  A  L  H  A  S  S  L  R  V  P  R  R :   P  P  W  N  T  K  M  S  V  E  E  L  D  I  N  E  R  Q  A  F  L  A  W  R  R  N  L  A  R :   L  E  E  N  E  K  L  V  L  T  P  F  E  K  N  L  D  I  W  R  Q  L  W  R  V  V  E  R  S  D  L  :  L  V  M  V  V  D  A  R  D  P  L  F  Y  R  C  P  D  L  E  :  A  Y  A  L  E  V  D  Q  H  K  K  T  M  L  L  V  N  K  A  D  L  L  P  I  S  I  R :   K  K  W  A  E  Y  F  H  Q  Q  G  I  L  F  L  F  W  S  A  K  A  A  S  A  A  L  S  A  S  E  V  P  M  S  S  Q  E  A  G  D  A  D  T  K  I  L  G  R  E  E  L  L  A  R  L  Q  S  A  A  E  E  I  V  L  T  K  N  R  L  A  S  D  A  D  E  N  L  A  E  D  V  Q  S  R  S  V  M  V  G  F  V  G  Y  P  N  V  G  K  S  S  T  I  N  A  L  V  G  E  K  </first_frame>
            <second_frame>  L  L  L  R  R  R  R  L  P  S  P  P  S  S  T  T  D  Y  G  D  Q  K  V  T  I  F  E  Y  S  Y  S  F  C  N  W  V  F  T  F  F  F  C  *  A  N  *  I  *  R  E  K  E  *  W  V  K  E  R  K  V  R  *  V  G  H  W  *  S  T  I  I  R  *  F  S  N  R  K  I  R  V  E  F  I  G  I  I  I  R  R  F  W  N  L  *  L  K  L  L  I  *  K  L  *  *  N  R  Q  M  K  L  T  V  S  I  L  T  L  I  L  L  L  I  F  S  S  I   : W  T  L  A  L  V  L  V  I  C  D  L  K  K  D  *  S  S  R  R  K  R  R  L  C  M  L  V  V  F  A  F  H  A   : G  P  H  G  I  L  K  C  P  W  K  S  L  I  L  M  K  D  K  L  F  *  L  G  D  A  I  L  Q   : G  L  K  R  T  R  N  W  F  S  P  L  L  K  R  T  W  I  S  G  D  S  F  G  E  L  L  S  V  V  I  C :   L  *  W  L  L  M  H  V  T  H  F  F  I  G  V  L  I  L  R :   L  M  H  *  K  S  T  N  T  K  K  Q  C  F  L  L  T  K  L  I  F  Y  P  F  L  S   : E  R  N  G  L  N  T  S  T  S  K  G  F  F  F  F  S  G  Q  L  K  L  P  L  L  L  S  V  L  Q  K  Y  Q  *  A  L  K  R  Q  V  M  L  I  R  K  Y  *  A  G  R  S  Y  W  P  A  Y  S  L  Q  Q  R  R  *  F  *  L  R  I  G  *  L  L  M  L  M  R  T  W  Q  K  M  F  S  L  E  V  *  W  W  G  L  W  G  I  L  M  L  G  K  V  Q  R  L  M  L  W  *  G  K  N </second_frame>
            <third_frame>   C  S  S  A  A  A  A  Y  L  H  R  R  H  L  P  P  T  T  V  T  K  K  S  Q  S  L  N  T  H  I  V  S  V  T  G  F  S  L  F  F  F  V  K  L  I  E  F  E  E  K  R  S  N  G  *  R  R  E  K  F  V  R  *  G  T  G  E  A  P  *  S  D  D  S  A  I  E  R  *  G  S  S  L  *  E  S  *  *  E  G  S  G  I  C  N  *  S  Y  *  F  R  S  C  N  R  T  D  R  *  S  S  P  S  L  F  *  P  *  S  S  C  *  S  S  R  Q  S  :  G  L  W  L  *  F  W  *  Y  A  T  *  R  K  I  E  A  A  E  E  R  G  G  F  A  C  *  *  S  S  R  S  T  Q  :  A  P  M  E  Y  *  N  V  R  G  R  A  *  Y  *  *  K  T  S  F  S  S  L  A  T  Q  S  C  K  :  A  *  R  E  R  E  T  G  S  H  P  F  *  K  E  P  G  Y  L  E  T  A  L  E  S  C  *  A  *  *  S   : A  C  N  G  C  *  C  T  *  P  T  F  L  S  V  S  *  S  *   : G  L  C  T  R  S  R  P  T  Q  K  N  N  A  S  C  *  Q  S  *  S  F  T  H  F  Y  Q  :  K  E  M  G  *  I  L  P  P  A  R  D  S  F  S  F  L  V  S  *  S  C  L  C  C  S  Q  C  F  R  S  T  N  E  L  S  R  G  R  *  C  *  Y  E  N  I  R  Q  G  G  A  I  G  P  L  T  V  C  S  R  G  D  S  F  D  *  E  *  V  S  F  *  C  *  *  E  L  G  R  R  C  S  V  *  K  C  D  G  G  V  C  G  V  S  *  C  W  E  K  F  N  D  *  C  F  G  R  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44754" stop="44507"/>
                    <exon start="39874" stop="39773"/>
                    <exon start="39697" stop="39611"/>
                    <exon start="38969" stop="38876"/>
                    <exon start="37467" stop="37411"/>
                    <exon start="37094" stop="37015"/>
                    <exon start="36923" stop="36596"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLKRKGVMGKGEKSSLGRALVKHHNQMIQQSKDKGRVYRNHNKKVLESVTEVTDLEAVIEQTDEAHRLYSDLNPPVNLLVNLDSGSSSGDMRPEERLKQQKKEEALHASSLRVPRRPPWNTKMSVEELDINERQAFLAWRRNLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYALEVDQHKKTMLLVNKADLLPISIRKKWAEYFHQQGILFLFWSAKAASAALSASEVPMSSQEAGDADTKILGREELLARLQSAAEEIVLTKNRLASDADENLAEDVQSRSVMVGFVGYPNVGKSSTINALVGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42383" e_stop="41871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="42383" e_stop="41871" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42383" stop="41871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</gDNA_template>
            <first_frame> V  L  D  E  V  G  T  S  F  L  S  T  F  R  S  V  M  V  I  S  K  P  R  S  I  R  G  N  F  L  R  C  N  I  E  E  S  *  S  R  R  T  K  *  K  N  A  E  *  V  P  F  F  S  P  F  G  T  I  T  L  L  F  C  F  F  S  C  E  P  F  I  L  A  E  L  *  S  E  R  G  L  N  R  C  Y  N  H  M  H  H  F  Q  *  G  Q  E  A  K  S  S  T  A  D  N  L  F  C  H  V  K  *  L  W  D  G  K  G  R  I  C  Y  R  K  N  P  Y  *  R  K  E  S  L  F  P  W  H  S  L  S  C  F  D  G  M  L  T  *  K  A  *  L  S  V  A  G  R  I  A  V  *  G  V  H  L  K  *  K  E  T  K </first_frame>
            <second_frame>  Y  W  M  R  L  G  L  L  F  C  Q  H  F  V  V  S  W  L  Y  R  S  Q  D  Q  F  V  V  I  F  S  G  A  T  *  K  N  L  R  V  E  E  Q  N  E  K  M  Q  N  K  C  P  F  F  P  H  S  E  Q  L  P  Y  C  S  V  F  S  A  V  S  R  S  F  *  L  N  Y  R  V  K  G  V  *  I  V  V  T  I  I  C  I  I  F  N  E  A  K  R  P  S  L  A  L  L  T  T  C  F  A  M  L  N  S  Y  G  M  V  K  E  G  F  A  I  A  K  I  H  T  K  G  R  S  P  F  F  H  G  T  A  S  V  A  L  M  E  C  L  H  E  R  L  N  *  V  L  R  V  E  L  L  Y  E  E  S  T  *  N  K  R  K  Q   </second_frame>
            <third_frame>   T  G  *  G  W  D  F  F  F  V  N  I  S  *  C  H  G  Y  I  E  A  K  I  N  S  W  *  F  S  Q  V  Q  H  R  R  I  L  E  *  K  N  K  M  K  K  C  R  I  S  A  L  F  F  P  I  R  N  N  Y  L  T  V  L  F  F  Q  L  *  A  V  H  F  S  *  T  I  E  *  K  G  F  E  S  L  L  Q  S  Y  A  S  F  S  M  R  P  R  G  Q  V  *  H  C  *  Q  L  V  L  P  C  *  I  V  M  G  W  *  R  K  D  L  L  S  Q  K  S  I  L  K  E  G  V  P  F  S  M  A  Q  P  Q  L  L  *  W  N  A  Y  M  K  G  L  I  E  C  C  G  *  N  C  C  M  R  S  P  L  K  I  K  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42136" stop="41927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVVTIICIIFNEAKRPSLALLTTCFAMLNSYGMVKEGFAIAKIHTKGRSPFFHGTASVALMECLHERLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46089" PGL_stop="45450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46089" e_stop="45450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="46089" e_stop="45450" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46089" stop="45501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376046" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46088" stop="45501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45819" stop="45450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223633" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</gDNA_template>
            <first_frame> E  N  F  *  L  Q  F  L  H  F  S  S  S  Y  S  S  S  Y  F  *  I  M  L  F  S  K  S  S  S  S  Y  Y  Q  Q  A  S  *  W  T  G  N  D  S  P  L  S  I  S  *  Q  *  F  R  T  V  E  I  D  G  R  *  R  S  *  L  D  F  *  C  *  F  L  G  H  H  Y  V  L  L  R  R  S  M  G  *  *  F  H  N  I  S  F  C  Y  L  *  C  R  S  G  C  P  T  M  S  N  G  M  L  V  D  D  L  *  R  R  N  V  I  W  L  *  S  R  E  *  I  L  G  V  V  S  L  H  Q  C  I  K  S  L  N  D  A  Y  Y  L  R  V  C  L  K  N  Y  Q  F  F  V  F  K  I  N  Q  I  Q  L  S  L  L  R  T  M  *  G  C  S  V  I  N  T  C  N  M  Y  K  A  I  *  Y  L  Y  I  V  T  I  T  Y  N  F  I  I  A  A  K  L  S  *  Y  N  Y  K  V  *  L  </first_frame>
            <second_frame>  K  T  F  N  C  N  F  Y  I  F  L  L  L  I  L  P  L  I  F  E  S  C  C  L  A  R  V  Q  V  H  I  I  N  K  L  P  D  G  L  A  M  T  L  H  C  Q  S  H  D  N  D  L  G  Q  L  R  L  T  G  G  D  E  A  S  W  T  F  S  V  N  F  W  G  T  T  M  F  Y  C  D  A  Q  W  D  D  S  S  T  T  Y  R  F  V  T  Y  D  A  A  R  D  A  R  R  C  Q  T  E  C  W  W  M  I  S  E  E  E  T  L  Y  G  Y  N  Q  E  S  E  Y  W  E  L  F  P  F  T  S  A  *  N  L  L  M  M  P  I  I  F  V  C  V  *  K  I  I  N  F  S  Y  L  R  L  T  K  S  N  Y  R  Y  F  V  Q  C  K  V  V  R  *  S  T  H  V  T  C  T  R  Q  Y  D  I  Y  I  *  L  L  L  L  T  I  S  S  L  L  Q  N  Y  L  N  I  I  I  K  F  D  * </second_frame>
            <third_frame>   K  L  L  I  A  I  F  T  F  F  F  F  L  F  F  L  L  F  L  N  H  V  V  *  Q  E  F  K  F  I  L  S  T  S  F  L  M  D  W  Q  *  L  S  I  V  N  L  M  T  M  I  *  D  S  *  D  *  R  E  V  T  K  L  V  G  L  L  V  L  I  F  G  A  P  L  C  F  I  A  T  L  N  G  M  I  V  P  Q  H  I  V  L  L  L  M  M  P  L  G  M  P  D  D  V  K  R  N  A  G  G  *  S  L  K  K  K  R  Y  M  V  I  I  K  R  V  N  T  G  S  C  F  P  S  P  V  H  K  I  S  *  *  C  L  L  S  S  C  V  F  K  K  L  S  I  F  R  I  *  D  *  P  N  P  I  I  V  T  S  Y  N  V  R  L  F  G  D  Q  H  M  *  H  V  Q  G  N  M  I  F  I  Y  S  Y  Y  Y  L  Q  F  H  H  C  C  K  I  I  L  I  *  L  *  S  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46088" stop="45678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFNCNFYIFLLLILPLIFESCCLARVQVHIINKLPDGLAMTLHCQSHDNDLGQLRLTGGDEASWTFSVNFWGTTMFYCDAQWDDSSTTYRFVTYDAARDARRCQTECWWMISEEETLYGYNQESEYWELFPFTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63645" PGL_stop="59981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63645" e_stop="63598"/>
            <exon e_start="62334" e_stop="62264"/>
            <exon e_start="62086" e_stop="62007"/>
            <exon e_start="61129" e_stop="61015"/>
            <exon e_start="60802" e_stop="60750"/>
            <exon e_start="60320" e_stop="60192"/>
            <exon e_start="60111" e_stop="59981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.199" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63645" e_stop="63598" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.957">
            <gDNA_intron_boundary i_start="63597" i_stop="62335" i_length="1263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62334" e_stop="62264" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.199" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62263" i_stop="62087" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62086" e_stop="62007" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62006" i_stop="61130" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61129" e_stop="61015" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61014" i_stop="60803" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60802" e_stop="60750" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60749" i_stop="60321" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60320" e_stop="60192" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="60191" i_stop="60112" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.954">
            <gDNA_exon_boundary e_start="60111" e_stop="59981" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63645" stop="63598"/>
              <exon start="62334" stop="62264"/>
              <exon start="62086" stop="62007"/>
              <exon start="61129" stop="61015"/>
              <exon start="60802" stop="60750"/>
              <exon start="60320" stop="60192"/>
              <exon start="60111" stop="59981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62334" stop="62264"/>
              <exon start="62086" stop="62007"/>
              <exon start="61129" stop="61015"/>
              <exon start="60802" stop="60750"/>
              <exon start="60320" stop="60192"/>
              <exon start="60111" stop="60045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG : ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT : GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA : GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT : GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG : ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG : AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</gDNA_template>
            <first_frame> E  G  Q  F  L  N  F  F  R  R  K  K  K  S  R  K  :  I  L  R  I  N  S  *  L  K  M  S  S  P  S  K  R  R  D  M  D  V  M  K  L :   M  M  S  D  Y  K  V  E  T  I  N  D  G  I  T  E  F  N  V  E  F  H  G  P  K  E   : S  L  Y  E  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  L  N  K  I  F  H  P  N  V  D  E  L :   S  G  S  V  C  L  D  V  I  N  Q  S  W  S  P  M  F   : D  L  L  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  D  A  A  S  L  M  M  K  D  K  N  Q  Y  E  Q  K  V  K   : E  Y  C  E  R  Y  A  K  K  E  N  V  V  G  T  P  K  D  D  S  D  D  E  I  S  E  E  E  F  S  G  Q  S  E  S  D  D  E  V  V  G  H  A  D </first_frame>
            <second_frame>  K  D  N  F  S  I  F  S  E  E  K  K  K  A  E  R :   F  *  G  S  I  V  S  *  K  C  L  L  Q  A  K  E  E  I  W  M  L  *  N   : *  *  *  V  I  I  R  W  R  Q  L  M  M  E  L  R  S  S  T  W  N  F  T  A  Q  K  K  :  A  F  M  K  V  E  F  G  K  *  G  S  S  C  Q  M  P  T  L  T  S  L  L  P  S  G  F  S  T  K  Y  S  T  L  M  L  M  S   : C  L  A  L  Y  V  W  M  S  S  I  S  H  G  A  L  C  L  :  I  S  *  T  F  L  R  F  S  C  H  S  F  C  Y  I  R  I  L  R  I  H  *  M  V  M  Q  P  H  *  *  *  K  T  R  I  N  M  S  K  K  *  K  :  S  T  V  N  G  T  Q  R  R  R  M  S  L  A  H  Q  K  M  I  V  M  M  R  L  V  K  R  S  S  V  D  K  A  K  A  M  M  K  L  L  D  M  L   </second_frame>
            <third_frame>   R  T  I  S  Q  F  F  Q  K  K  K  K  K  P  K   : D  S  E  D  Q  *  L  V  E  N  V  F  S  K  Q  K  K  R  Y  G  C  Y  E  I  :  D  D  E  *  L  *  G  G  D  N  *  *  W  N  Y  G  V  Q  R  G  I  S  R  P  K  R  K :   P  L  *  R  W  S  L  E  N  K  G  R  V  A  R  C  L  P  L  Q  V  S  F  H  R  V  S  Q  Q  N  I  P  P  *  C  *  *  A  :  V  W  L  C  M  F  G  C  H  Q  S  V  M  E  P  Y  V  * :   S  L  K  R  F  *  G  F  P  A  T  A  F  A  I  S  E  S  F  G  S  I  K  W  *  C  S  L  T  D  D  E  R  Q  E  S  I  *  A  K  S  E  R :   V  L  *  T  V  R  K  E  G  E  C  R  W  H  T  K  R  *  *  *  *  *  D  *  *  R  G  V  Q  W  T  K  R  K  R  *  *  S  C  W  T  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62313" stop="62264"/>
                    <exon start="62086" stop="62007"/>
                    <exon start="61129" stop="61015"/>
                    <exon start="60802" stop="60750"/>
                    <exon start="60320" stop="60192"/>
                    <exon start="60111" stop="59981"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSSPSKRRDMDVMKLMMSDYKVETINDGITEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFLNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDKNQYEQKVKEYCERYAKKENVVGTPKDDSDDEISEEEFSGQSESDDEVVGHAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="67404" PGL_stop="64521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67404" e_stop="67210"/>
            <exon e_start="65619" e_stop="64673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67404" e_stop="67210" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="67209" i_stop="65620" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="65619" e_stop="64673" e_length="947"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67404" stop="67210"/>
              <exon start="65619" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67402" stop="67210"/>
              <exon start="65619" stop="65168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67384" stop="67210"/>
              <exon start="65619" stop="65095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67366" stop="67210"/>
              <exon start="65619" stop="65165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67344" stop="67210"/>
              <exon start="65619" stop="65431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67335" stop="67210"/>
              <exon start="65619" stop="65074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67289" stop="67210"/>
              <exon start="65619" stop="65169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65610" stop="65109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65358" stop="64673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65358" stop="64781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</gDNA_template>
            <first_frame> W  K  G  G  E  E  S  G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  A  Q  P  L  R  C  G  K  S  A  V  S  S  A  R  T  A  Q  R  N  V  V  A  W  L  Y  H  K  A  L  S  L  Q  L  N  Q  Q  L  F  F  K  F  P  R  S  F  A  P  H  L  P  K  F  A  F  S  F  Q  V  L  P  F  R  H  V  L  N  I  I  *  D  L  F  Q  G  T  G  C  Y  R  L  L  *  A  Y  M  S  M  M  V  I  Q  P  R  *  L  D  Q  *  L  L  L  T  Y  A  I  Y  I  T  L  *  V  G  L  E  L  K  C  D  N  Q  L  L  L  F  P  E  K  A  I  M  Q  L  C  K  T  L  S  D  *  L  Y  G  V  F  V  Y  V  Y  D  Y  K  A  R  S  F  G  L  L  L  *  I  L  E  K  *  C  I  F  C  C  L  T  F  L  *  D  I  V  H  V  N  L  P  N  P  G  *  S  S  T  V  S  I  F  W  L  N  C  L  *  T  L  S  T  H  I  L  F  V  Q  F  M  T  L  R  N  F  R  C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S   </first_frame>
            <second_frame>  G  K  E  E  K  R  A  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   W  L  S  R  Y  D  V  V  N  P  Q  S  H  L  Q  E  Q  P  N  A  M  *  *  H  G  S  T  T  R  H  *  A  Y  N  *  T  S  N  S  F  S  S  F  L  V  H  L  L  P  T  F  L  N  L  L  S  V  F  K  F  Y  P  L  G  M  F  *  T  L  Y  R  T  C  F  K  V  Q  D  V  T  D  Y  S  R  R  I  C  Q  *  W  *  F  S  L  V  N  W  I  N  S  C  Y  *  L  M  L  Y  I  *  L  Y  R  L  G  L  S  L  N  V  I  T  N  F  S  Y  F  Q  K  K  Q  *  C  N  F  A  K  P  C  L  I  N  C  M  E  C  S  Y  M  F  M  I  I  R  R  G  H  L  V  F  C  Y  E  F  L  R  S  D  A  F  S  A  A  L  L  S  C  E  I  S  F  M  L  I  F  P  I  P  V  D  P  P  L  F  Q  F  F  G  *  I  V  S  E  H  S  Q  L  I  F  C  L  C  N  L  *  L  C  E  I  S  G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  </second_frame>
            <third_frame>   E  R  R  R  R  E  R  H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  G  S  A  A  T  M  W  *  I  R  S  L  I  C  K  N  S  P  T  Q  C  S  S  M  A  L  P  Q  G  I  K  L  T  I  E  P  A  T  L  F  Q  V  S  S  F  I  C  S  P  P  S  *  I  C  F  Q  F  S  S  F  T  L  *  A  C  F  E  H  Y  I  G  L  V  S  R  Y  R  M  L  Q  I  T  L  G  V  Y  V  N  D  G  N  S  A  S  L  I  G  S  I  A  V  I  N  L  C  Y  I  Y  N  F  I  G  W  A  *  A  *  M  *  *  P  T  S  P  I  S  R  K  S  N  N  A  T  L  Q  N  L  V  *  L  T  V  W  S  V  R  I  C  L  *  L  *  G  E  V  I  W  S  S  V  M  N  S  *  E  V  M  H  F  L  L  P  Y  F  P  V  R  Y  R  S  C  *  S  S  Q  S  R  L  I  L  H  C  F  N  F  L  A  K  L  S  L  N  T  L  N  S  Y  S  V  C  A  I  Y  D  F  A  K  F  Q  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67296" stop="67210"/>
                    <exon start="65619" stop="65407"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKLWDRLIQNWIQFFRITSVIVIVLFRSVAQPLRCGKSAVSSARTAQRNVVAWLYHKALSLQLNQQLFFKFPRSFAPHLPKFAFSFQVLPFRHVLNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65225" stop="65025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNFAKPCLINCMECSYMFMIIRRGHLVFCYEFLRSDAFSAALLSCEISFMLIFPIPVDPPLFQFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67383" e_stop="67210"/>
            <exon e_start="64960" e_stop="64521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67383" e_stop="67210" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67209" i_stop="64961" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="64960" e_stop="64521" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67383" stop="67210"/>
              <exon start="64960" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67354" stop="67210"/>
              <exon start="64960" stop="64535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67353" stop="67210"/>
              <exon start="64960" stop="64521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</gDNA_template>
            <first_frame> G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M  G  S  C  F  V  S  H  L  C  R  F  N  L  Y  V  S  *  N  *   </first_frame>
            <second_frame>  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  V  L  A  L  Y  L  I  C  V  V  L  I  F  M  L  V  E  I  D  </second_frame>
            <third_frame>   H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G  F  L  L  C  I  S  F  V  S  F  *  S  L  C  *  L  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67342" stop="67210"/>
                    <exon start="64960" stop="64788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSYTKRREEERKQITKKIMGSTDSELDSIFQDNKRHRNRLVPIGAFLTAGVLTAGLISFKRGNSQLGQQLMRARVLVQGGTVALMVGSAYYYGDNFKRAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64572" PGL_stop="65267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64572" e_stop="65267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="64572" e_stop="65267" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64572" stop="65267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGAACCCATAAATTTTGAAAAATACATAAACATTAGCATTATGTTTCACTCTGTTATTACTTTTTCCTCTAATTTTCTTTCTTATGTGATTGGGGTGGCAATGACAGCCATGTAAAGAAACTGCATCCTAGCAAGATATGGAATCATTTTTTCCCAGCAGAAAATCAACTCATGACAGACGAATGAGGGAGTCGTTTGGTAGTCAGTCAGTCAGTCATCCAGCGCGCTTGAAATTATCTCCATAGTAATATGCTGAACCAACCATCAGTGCGACTGTACCACCTTGAACAAGAACTCTAGCTCTCATTAGTTGCTGACCTAATTGAGAATTTCCCCGCTTGAAACTAATGAGTCCGGCAGTGAGCACTCCTGCAGTGAGAAATGCACCTGAAATTTCGCAAAGTCATAAATTGCACAAACAGAATATGAGTTGAGAGTGTTCAGAGACAATTTAGCCAAAAAATTGAAACAGTGGAGGATCAACCGGGATTGGGAAGATTAACATGAACGATATCTCACAGGAAAGTAAGGCAGCAGAAAATGCATCACTTCTCAAGAATTCATAACAGAAGACCAAATGACCTCGCCTTATAATCATAAACATATACGAACACTCCATACAGTTAATCAGACAAGGTTTTGCAAAGTTGCATTATTGCTTTTTCTGGAAATAGGAGAAGTTGGTTATCACATT</gDNA_template>
            <first_frame> Q  E  P  I  N  F  E  K  Y  I  N  I  S  I  M  F  H  S  V  I  T  F  S  S  N  F  L  S  Y  V  I  G  V  A  M  T  A  M  *  R  N  C  I  L  A  R  Y  G  I  I  F  S  Q  Q  K  I  N  S  *  Q  T  N  E  G  V  V  W  *  S  V  S  Q  S  S  S  A  L  E  I  I  S  I  V  I  C  *  T  N  H  Q  C  D  C  T  T  L  N  K  N  S  S  S  H  *  L  L  T  *  L  R  I  S  P  L  E  T  N  E  S  G  S  E  H  S  C  S  E  K  C  T  *  N  F  A  K  S  *  I  A  Q  T  E  Y  E  L  R  V  F  R  D  N  L  A  K  K  L  K  Q  W  R  I  N  R  D  W  E  D  *  H  E  R  Y  L  T  G  K  *  G  S  R  K  C  I  T  S  Q  E  F  I  T  E  D  Q  M  T  S  P  Y  N  H  K  H  I  R  T  L  H  T  V  N  Q  T  R  F  C  K  V  A  L  L  L  F  L  E  I  G  E  V  G  Y  H  I </first_frame>
            <second_frame>  K  N  P  *  I  L  K  N  T  *  T  L  A  L  C  F  T  L  L  L  L  F  P  L  I  F  F  L  M  *  L  G  W  Q  *  Q  P  C  K  E  T  A  S  *  Q  D  M  E  S  F  F  P  S  R  K  S  T  H  D  R  R  M  R  E  S  F  G  S  Q  S  V  S  H  P  A  R  L  K  L  S  P  *  *  Y  A  E  P  T  I  S  A  T  V  P  P  *  T  R  T  L  A  L  I  S  C  *  P  N  *  E  F  P  R  L  K  L  M  S  P  A  V  S  T  P  A  V  R  N  A  P  E  I  S  Q  S  H  K  L  H  K  Q  N  M  S  *  E  C  S  E  T  I  *  P  K  N  *  N  S  G  G  S  T  G  I  G  K  I  N  M  N  D  I  S  Q  E  S  K  A  A  E  N  A  S  L  L  K  N  S  *  Q  K  T  K  *  P  R  L  I  I  I  N  I  Y  E  H  S  I  Q  L  I  R  Q  G  F  A  K  L  H  Y  C  F  F  W  K  *  E  K  L  V  I  T   </second_frame>
            <third_frame>   R  T  H  K  F  *  K  I  H  K  H  *  H  Y  V  S  L  C  Y  Y  F  F  L  *  F  S  F  L  C  D  W  G  G  N  D  S  H  V  K  K  L  H  P  S  K  I  W  N  H  F  F  P  A  E  N  Q  L  M  T  D  E  *  G  S  R  L  V  V  S  Q  S  V  I  Q  R  A  *  N  Y  L  H  S  N  M  L  N  Q  P  S  V  R  L  Y  H  L  E  Q  E  L  *  L  S  L  V  A  D  L  I  E  N  F  P  A  *  N  *  *  V  R  Q  *  A  L  L  Q  *  E  M  H  L  K  F  R  K  V  I  N  C  T  N  R  I  *  V  E  S  V  Q  R  Q  F  S  Q  K  I  E  T  V  E  D  Q  P  G  L  G  R  L  T  *  T  I  S  H  R  K  V  R  Q  Q  K  M  H  H  F  S  R  I  H  N  R  R  P  N  D  L  A  L  *  S  *  T  Y  T  N  T  P  Y  S  *  S  D  K  V  L  Q  S  C  I  I  A  F  S  G  N  R  R  S  W  L  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0089M02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="71804" PGL_stop="71288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71804" e_stop="71288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="71804" e_stop="71288" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71804" stop="71518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71803" stop="71288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71616" stop="71294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</gDNA_template>
            <first_frame> F  F  L  K  G  L  L  K  N  N  N  A  F  K  P  S  K  S  Q  K  G  S  I  Q  N  S  K  F  G  *  A  F  K  E  K  Q  W  K  S  *  F  *  *  *  *  L  S  W  *  F  D  D  V  K  H  V  L  V  V  A  S  S  I  H  L  V  F  V  C  V  A  L  Y  I  V  R  I  L  H  E  Y  R  P  E  C  V  *  S  S  K  S  Y  A  F  F  K  D  L  I  R  M  *  Q  Q  F  W  R  V  G  A  I  W  V  L  L  C  T  *  M  A  S  I  Y  V  F  *  G  E  I  S  L  E  Q  N  Q  E  K  C  *  T  L  L  F  F  L  F  F  Y  Y  L  W  K  *  I  I  V  S  K  H  L  L  S  N  V  V  N  D  F  *  R  N  F  </first_frame>
            <second_frame>  F  F  *  R  V  C  *  K  T  T  M  P  S  N  Q  V  N  P  K  R  E  V  S  K  T  Q  S  L  D  E  L  S  K  K  S  N  G  K  A  S  F  S  S  S  S  *  A  G  N  L  M  M  *  N  M  S  *  L  *  H  L  V  F  I  W  C  L  C  V  L  L  S  I  L  F  G  F  F  M  N  T  V  Q  S  V  S  D  P  L  K  A  M  L  F  L  K  I  *  Y  E  C  D  N  N  F  G  G  S  E  Q  Y  G  F  C  F  V  H  R  W  Q  V  Y  M  C  F  R  E  R  L  A  L  N  K  I  K  K  S  A  K  L  Y  C  F  F  Y  F  S  T  T  C  G  N  E  S  L  Y  Q  N  I  Y  Y  P  M  *  *  M  I  F  R  E  I  F </second_frame>
            <third_frame>   F  F  E  G  F  V  E  K  Q  Q  C  L  Q  T  K  *  I  P  K  G  K  Y  P  K  L  K  V  W  M  S  F  Q  R  K  A  M  E  K  L  V  L  V  V  V  V  E  L  V  I  *  *  C  K  T  C  L  S  C  S  I  *  Y  S  F  G  V  C  V  C  C  S  L  Y  C  S  D  S  S  *  I  P  S  R  V  C  L  I  L  *  K  L  C  F  F  *  R  S  D  T  N  V  T  T  I  L  E  G  R  S  N  M  G  F  A  L  Y  I  D  G  K  Y  I  C  V  L  G  R  D  *  P  *  T  K  S  R  K  V  L  N  S  I  V  F  F  I  F  L  L  L  V  E  M  N  H  C  I  K  T  F  T  I  Q  C  S  K  *  F  L  E  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71509" stop="71312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YECDNNFGGSEQYGFCFVHRWQVYMCFRERLALNKIKKSAKLYCFFYFSTTCGNESLYQNIYYPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74266" PGL_stop="73564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74266" e_stop="73564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="74266" e_stop="73564" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74266" stop="73564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</gDNA_template>
            <first_frame> F  C  C  F  T  S  F  T  S  I  F  L  H  *  W  *  F  C  C  N  K  K  I  C  S  D  Y  L  *  L  S  L  F  L  L  F  S  F  L  F  L  F  S  S  Y  *  D  Q  K  S  S  Y  L  D  K  S  P  F  L  Y  P  M  N  S  T  I  F  H  F  F  T  K  Q  L  L  L  K  P  L  F  R  N  T  H  L  T  K  N  S  V  L  D  P  L  L  F  V  H  Q  K  S  H  L  C  S  *  Q  I  Q  I  *  S  F  P  Q  F  G  R  S  S  S  M  V  L  N  L  *  I  H  I  Y  T  I  S  T  Y  T  L  T  H  L  S  R  F  H  L  *  W  V  F  L  K  I  D  *  F  R  R  R  E  L  N  V  H  R  R  H  S  Y  L  L  P  G  D  Y  L  L  M  L  Y  L  T  T  H  Q  T  R  I  S  L  L  S  H  N  I  V  Y  L  Y  T  L  L  I  T  F  T  I  F  Y  L  I  P  R  N  C  R  G  K  W  S  S  L  V  I  L  R  F  L  M  N  L  I  R  Y  </first_frame>
            <second_frame>  S  V  A  S  L  L  S  L  Q  S  F  S  I  N  G  D  F  A  V  T  R  K  Y  V  Q  I  I  C  S  Y  P  F  S  Y  S  S  H  F  C  S  Y  S  L  L  I  R  T  K  N  P  L  T  S  T  N  L  H  F  C  T  R  *  T  R  R  S  F  T  F  S  Q  S  N  C  C  *  N  H  F  S  E  T  P  I  S  Q  K  T  P  S  W  I  R  Y  C  S  S  T  K  N  R  I  Y  V  L  N  K  F  R  F  E  V  F  P  N  L  G  E  V  L  Q  W  Y  *  T  C  R  S  T  S  I  Q  Y  L  H  T  R  *  P  I  Y  Q  D  F  T  F  N  G  C  F  *  R  S  I  N  S  G  E  E  N  S  T  F  I  A  D  T  H  I  C  C  P  E  I  T  C  S  C  F  T  *  R  P  I  K  L  V  F  R  S  Y  L  T  T  L  Y  T  F  T  L  F  *  L  L  L  Q  F  F  T  *  Y  P  E  I  V  E  E  N  G  V  P  *  L  Y  *  D  S  *  *  I  *  F  V  I </second_frame>
            <third_frame>   L  L  L  H  F  F  H  F  N  L  S  P  L  M  V  I  L  L  *  Q  E  N  M  F  R  L  S  V  V  I  P  F  L  T  L  L  I  S  V  L  I  L  F  L  L  G  P  K  I  L  L  P  R  Q  I  S  I  S  V  P  D  E  L  D  D  L  S  L  F  H  K  A  I  A  A  E  T  T  F  P  K  H  P  S  H  K  K  L  R  L  G  S  A  T  V  R  P  P  K  I  A  F  M  F  L  T  N  S  D  L  K  F  S  P  I  W  E  K  F  F  N  G  T  K  P  V  D  P  H  L  Y  N  I  Y  I  H  A  D  P  S  I  K  I  S  P  L  M  G  V  F  K  D  R  L  I  P  A  K  R  T  Q  R  S  S  P  T  L  I  S  A  A  R  R  L  L  A  H  A  L  L  D  D  P  S  N  S  Y  F  A  L  I  S  Q  H  C  I  P  L  H  S  F  N  Y  F  Y  N  F  L  L  D  T  Q  K  L  S  R  K  M  E  F  P  S  Y  I  E  I  L  D  E  S  D  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74207" stop="73566"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENMFRLSVVIPFLTLLISVLILFLLGPKILLPRQISISVPDELDDLSLFHKAIAAETTFPKHPSHKKLRLGSATVRPPKIAFMFLTNSDLKFSPIWEKFFNGTKPVDPHLYNIYIHADPSIKISPLMGVFKDRLIPAKRTQRSSPTLISAARRLLAHALLDDPSNSYFALISQHCIPLHSFNYFYNFLLDTQKLSRKMEFPSYIEILDESDSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76980" PGL_stop="77504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76980" e_stop="77504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="76980" e_stop="77504" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76980" stop="77504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACAATATGGTCTACAATCTCTAGATTAATGAATGAATCCTACATTCAGATCTTGTACAACACACAACAAAGAAATTGGCAATCAAACTCACCAAATTCCCCAGTTTTCAGCTCAAGAAAAGTGGCACAAAAAGCAAATTCATCCTCTTTTTTACACTGGGAGGGAGGAGGGGTAAAGAAAACAACGCGCTATTATATAAATTACACGAATTATGACAAGAATTGAAACAAATGCGAAGATGTTATTCAGGAGATGGCAGCAAGCCTATCTCCTTTTAACTCTGCCGTGGACAACATACCATCACTCCCCTTTAAGAAGGTTCCCTGTATTTACAAGCAAGGGTGACACTTGGTTCTGAGATCGGGATCTTCAACGAGTACCTAAAAACTAATCAGCAGCCTGTTGTGAAACAGTTGCTGTAGACTTGGTATCAGTTTCGTTTAATTTGGACTTCTCCTTCAAAGGCTTCTGCGTACTAGATGTCCTTTTGATGGTTCTGCTTGGTTGTCTCGCTGTTTGAGGT</gDNA_template>
            <first_frame> A  Q  Y  G  L  Q  S  L  D  *  *  M  N  P  T  F  R  S  C  T  T  H  N  K  E  I  G  N  Q  T  H  Q  I  P  Q  F  S  A  Q  E  K  W  H  K  K  Q  I  H  P  L  F  Y  T  G  R  E  E  G  *  R  K  Q  R  A  I  I  *  I  T  R  I  M  T  R  I  E  T  N  A  K  M  L  F  R  R  W  Q  Q  A  Y  L  L  L  T  L  P  W  T  T  Y  H  H  S  P  L  R  R  F  P  V  F  T  S  K  G  D  T  W  F  *  D  R  D  L  Q  R  V  P  K  N  *  S  A  A  C  C  E  T  V  A  V  D  L  V  S  V  S  F  N  L  D  F  S  F  K  G  F  C  V  L  D  V  L  L  M  V  L  L  G  C  L  A  V  *  G </first_frame>
            <second_frame>  H  N  M  V  Y  N  L  *  I  N  E  *  I  L  H  S  D  L  V  Q  H  T  T  K  K  L  A  I  K  L  T  K  F  P  S  F  Q  L  K  K  S  G  T  K  S  K  F  I  L  F  F  T  L  G  G  R  R  G  K  E  N  N  A  L  L  Y  K  L  H  E  L  *  Q  E  L  K  Q  M  R  R  C  Y  S  G  D  G  S  K  P  I  S  F  *  L  C  R  G  Q  H  T  I  T  P  L  *  E  G  S  L  Y  L  Q  A  R  V  T  L  G  S  E  I  G  I  F  N  E  Y  L  K  T  N  Q  Q  P  V  V  K  Q  L  L  *  T  W  Y  Q  F  R  L  I  W  T  S  P  S  K  A  S  A  Y  *  M  S  F  *  W  F  C  L  V  V  S  L  F  E   </second_frame>
            <third_frame>   T  I  W  S  T  I  S  R  L  M  N  E  S  Y  I  Q  I  L  Y  N  T  Q  Q  R  N  W  Q  S  N  S  P  N  S  P  V  F  S  S  R  K  V  A  Q  K  A  N  S  S  S  F  L  H  W  E  G  G  G  V  K  K  T  T  R  Y  Y  I  N  Y  T  N  Y  D  K  N  *  N  K  C  E  D  V  I  Q  E  M  A  A  S  L  S  P  F  N  S  A  V  D  N  I  P  S  L  P  F  K  K  V  P  C  I  Y  K  Q  G  *  H  L  V  L  R  S  G  S  S  T  S  T  *  K  L  I  S  S  L  L  *  N  S  C  C  R  L  G  I  S  F  V  *  F  G  L  L  L  Q  R  L  L  R  T  R  C  P  F  D  G  S  A  W  L  S  R  C  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76982" stop="77206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWSTISRLMNESYIQILYNTQQRNWQSNSPNSPVFSSRKVAQKANSSSFLHWEGGGVKKTTRYYINYTNYDKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79889" PGL_stop="78100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79889" e_stop="79776"/>
            <exon e_start="78590" e_stop="78100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79889" e_stop="79776" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79775" i_stop="78591" i_length="1185"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78590" e_stop="78100" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79889" stop="79776"/>
              <exon start="78590" stop="78100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79889" stop="79776"/>
              <exon start="78590" stop="78196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG : TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</gDNA_template>
            <first_frame> E  G  W  C  D  S  V  G  S  V  E  Q  I  Q  E  K  L  L  K  R  Q  E  A  A  A  K  R  E  R  A  M  A  Y  A  L  A  H  Q  :  W  Q  A  G  S  R  Q  Q  A  T  L  S  G  F  E  P  D  K  S  S  W  G  W  N  W  L  E  R  W  M  A  V  R  P  W  E  N  R  F  L  D  L  N  V  R  D  G  V  M  P  N  E  N  E  S  A  E  P  V  N  G  M  K  N  Q  V  K  V  A  G  K  K  P  A  T  T  T  L  S  N  D  R  V  G  P  S  H  S  S  S  N  S  K  S  N  E  K  A  A  A  S  L  S  D  G  C  S  S  S  P  N  V  S  A  S  T  Q  E  T  P  A  A  L  V  N  K  P  K  S  K  P  N  R  E  D  L  V  E  E  A  S  S  K  P  V  L  G  S  R  S  H  S  N  P  K  E  R  S  T  P  S  D  K   </first_frame>
            <second_frame>  R  A  G  V  T  V  L  D  L  L  S  K  F  K  K  S  C  *  R  D  K  R  Q  L  L  S  V  K  E  Q  W  P  M  L  *  L  T  S :   G  R  Q  D  P  G  S  R  L  H  F  L  G  L  N  Q  I  K  A  A  G  V  G  T  G  *  R  D  G  W  Q  Y  A  H  G  K  I  V  F  *  T  L  M  S  E  M  E  S  C  L  M  K  M  N  Q  P  N  L  *  T  G  *  R  T  R  *  K  L  L  G  R  N  Q  Q  L  Q  L  F  Q  M  I  E  W  V  H  L  I  Q  A  V  T  Q  N  Q  M  K  R  Q  Q  H  R  S  L  M  V  A  V  L  P  Q  M  C  Q  Q  A  H  K  K  H  L  Q  H  *  L  T  N  L  S  P  N  Q  I  V  K  I  *  L  R  K  L  V  Q  N  P  S  L  V  L  D  H  T  A  I  L  R  R  D  L  L  P  L  I  N  </second_frame>
            <third_frame>   G  L  V  *  Q  C  W  I  C  *  A  N  S  R  K  V  A  K  E  T  R  G  S  C  *  A  *  K  S  N  G  L  C  F  S  S  P   : V  A  G  R  I  Q  A  A  G  Y  T  F  W  V  *  T  R  *  K  Q  L  G  L  E  L  V  R  E  M  D  G  S  T  P  M  G  K  S  F  S  R  P  *  C  Q  R  W  S  H  A  *  *  K  *  I  S  R  T  C  K  R  D  E  E  P  G  K  S  C  W  E  E  T  S  N  Y  N  S  F  K  *  *  S  G  S  I  S  F  K  Q  *  L  K  I  K  *  K  G  S  S  I  A  L  *  W  L  Q  F  F  P  K  C  V  S  K  H  T  R  N  T  C  S  I  S  *  Q  T  *  V  Q  T  K  S  *  R  F  S  *  G  S  *  F  K  T  R  P  W  F  *  I  T  Q  Q  S  *  G  E  I  Y  S  L  *  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79889" stop="79776"/>
                    <exon start="78590" stop="78102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGWCDSVGSVEQIQEKLLKRQEAAAKRERAMAYALAHQWQAGSRQQATLSGFEPDKSSWGWNWLERWMAVRPWENRFLDLNVRDGVMPNENESAEPVNGMKNQVKVAGKKPATTTLSNDRVGPSHSSSNSKSNEKAAASLSDGCSSSPNVSASTQETPAALVNKPKSKPNREDLVEEASSKPVLGSRSHSNPKERSTPSDK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="89292" PGL_stop="92484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89292" e_stop="89488"/>
            <exon e_start="90435" e_stop="90600"/>
            <exon e_start="90929" e_stop="91067"/>
            <exon e_start="91263" e_stop="91539"/>
            <exon e_start="91708" e_stop="91906"/>
            <exon e_start="92021" e_stop="92484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="89292" e_stop="89488" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89489" i_stop="90434" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="90435" e_stop="90600" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90601" i_stop="90928" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90929" e_stop="91067" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91068" i_stop="91262" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91263" e_stop="91539" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91708" e_stop="91906" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92021" e_stop="92484" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89292" stop="89488"/>
              <exon start="90435" stop="90539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89293" stop="89488"/>
              <exon start="90435" stop="90600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89294" stop="89488"/>
              <exon start="90435" stop="90600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90554" stop="90600"/>
              <exon start="90929" stop="91067"/>
              <exon start="91263" stop="91511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90575" stop="90600"/>
              <exon start="90929" stop="91067"/>
              <exon start="91263" stop="91539"/>
              <exon start="91708" stop="91834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91022" stop="91067"/>
              <exon start="91263" stop="91539"/>
              <exon start="91708" stop="91851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91326" stop="91539"/>
              <exon start="91708" stop="91906"/>
              <exon start="92021" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91329" stop="91539"/>
              <exon start="91708" stop="91906"/>
              <exon start="92021" stop="92059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91766" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91832" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91874" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91893" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG : TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG : GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG : CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  S :   L  R  S  *  L  K  L  M  R  S  *  V  T  H  R  S  V  R  F  M  I  S  M  E  K  K  H  *  K  K  E  W  V  V  V  V  A  H  M  I  H  L  T  S  L  I  P  S  L  V  E  V  L  L  E  :  V  V  V  V  E  D  K  E  R  G  G  V  T  M  *  C  I  H  *  R  C  R  L  R  T  Y  T  M  G  *  P  R  N  Y  R  F  R  A  M  L  F  A  R  S  V  V   : A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </first_frame>
            <second_frame>  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K   : V  *  G  A  S  S  S  L  *  G  L  E  *  L  T  E  A  *  D  L  *  S  V  W  R  R  S  T  E  R  R  N  G  W  W  W  W  H  T  *  S  I  *  P  L  *  F  L  L  *  W  K  S  F  W  R :   W  W  S  *  R  T  K  R  E  E  G  *  R  C  S  A  S  I  E  G  V  A  *  G  P  I  Q  W  D  D  Q  E  T  I  A  F  A  Q  C  Y  L  L  E  V  *  W  :  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </second_frame>
            <third_frame>   S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  :  F  K  E  L  A  Q  A  Y  E  V  L  S  D  S  Q  K  R  E  I  Y  D  Q  Y  G  E  E  A  L  K  E  G  M  G  G  G  G  G  T  H  D  P  F  D  L  F  N  S  F  F  S  G  S  P  F  G   : G  G  G  R  R  G  Q  R  E  R  R  G  D  D  V  V  H  P  L  K  V  S  L  E  D  L  Y  N  G  M  T  K  K  L  S  L  S  R  N  V  I  C  S  K  C  S  G :   K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89294" stop="89488"/>
                    <exon start="90435" stop="90600"/>
                    <exon start="90929" stop="91067"/>
                    <exon start="91263" stop="91539"/>
                    <exon start="91708" stop="91906"/>
                    <exon start="92021" stop="92343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELAQAYEVLSDSQKREIYDQYGEEALKEGMGGGGGTHDPFDLFNSFFSGSPFGGGGRRGQRERRGDDVVHPLKVSLEDLYNGMTKKLSLSRNVICSKCSGKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91162" e_stop="91539"/>
            <exon e_start="91708" e_stop="91906"/>
            <exon e_start="92021" e_stop="92484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="91162" e_stop="91539" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="91540" i_stop="91707" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91708" e_stop="91906" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="91907" i_stop="92020" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92021" e_stop="92484" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91162" stop="91515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91326" stop="91539"/>
              <exon start="91708" stop="91906"/>
              <exon start="92021" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91329" stop="91539"/>
              <exon start="91708" stop="91906"/>
              <exon start="92021" stop="92059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91766" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91832" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91863" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91874" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91893" stop="91906"/>
              <exon start="92021" stop="92484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> G  D  E  R  I  S  *  Y  R  E  V  R  F  Q  C  K  C  S  N  V  L  L  R  C  I  V  L  V  C  F  C  N  C  S  K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </first_frame>
            <second_frame>  E  M  K  G  S  P  D  I  E  K  *  D  F  N  A  S  A  Q  M  F  S  Y  V  V  L  Y  W  F  V  S  V  T  A  A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </second_frame>
            <third_frame>   R  *  K  D  L  L  I  *  R  S  E  I  S  M  Q  V  L  K  C  S  L  T  L  Y  C  I  G  L  F  L  *  L  Q  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91183" stop="91539"/>
                    <exon start="91708" stop="91906"/>
                    <exon start="92021" stop="92343"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YREVRFQCKCSNVLLRCIVLVCFCNCSKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="94041" PGL_stop="92788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94041" e_stop="94030"/>
            <exon e_start="93931" e_stop="93864"/>
            <exon e_start="93615" e_stop="93526"/>
            <exon e_start="93403" e_stop="93334"/>
            <exon e_start="93249" e_stop="92788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94041" e_stop="94030" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="94029" i_stop="93932" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93931" e_stop="93864" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.981">
            <gDNA_intron_boundary i_start="93863" i_stop="93616" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93615" e_stop="93526" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.953">
            <gDNA_intron_boundary i_start="93525" i_stop="93404" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93403" e_stop="93334" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="93333" i_stop="93250" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="93249" e_stop="92788" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94041" stop="94030"/>
              <exon start="93931" stop="93864"/>
              <exon start="93615" stop="93526"/>
              <exon start="93403" stop="93334"/>
              <exon start="93249" stop="92788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACCTTTCTG : ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA : GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA : CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG : AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATT</gDNA_template>
            <first_frame> N  T  F  L  :  T  L  *  *  L  H  *  T  G  E  *  D  C  R  *  Q  L  A  S  L  L  L  * :   N  I  S  T  S  F  V  I  R  R  C  T  T  F  Q  S  V  Q  V  P  S  C  W  T  R  T  S  Q  L  N :   S  V  M  L  A  S  F  V  L  S  R  T  T  I  H  F  R  S  L  N  A  P  K  :  N  V  V  M  R  S  A  N  R  Q  S  S  S  L  V  C  *  S  S  S  *  S  P  V  N  P  Q  K  K  E  V  L  T  *  F  N  G  F  K  I  L  A  S  E  E  D  P  F  T  R  *  L  I  L  I  S  E  T  A  T  I  S  K  S  L  K  V  F  W  Q  L  Q  K  C  V  Y  N  L  S  I  S  L  Q  *  R  P  L  K  Y  C  G  I  S  K  R  N  W  A  G  L  Q  *  F  A  D  D  L  S  H  V  M  F  T  D  I  D  H  R  L  C  E  *  T  F  F  L  *  S  Y  V  T  R  T  L  Q  I  E  E  S  T  Q  L  S  L  *  V  V  C  C  V  L  T  L  I </first_frame>
            <second_frame>  T  P  F  * :   P  S  D  D  S  T  K  L  E  N  K  T  A  D  S  S  W  H  R  C  C  F   : R  I  S  P  L  L  L  *  S  A  D  V  P  R  F  S  Q  F  K  Y  H  H  A  G  R  E  L  H  S  *   : T  L  *  C  *  P  P  L  F  C  R  E  Q  Q  S  T  S  E  V  *  M  L  Q  R :   M  W  *  *  D  L  Q  T  D  N  L  P  A  W  F  A  D  P  R  V  S  H  R  S  I  L  R  R  R  R  C  *  L  S  S  M  G  S  R  F  S  L  P  K  K  I  H  S  P  D  D  *  S  *  S  R  R  Q  L  R  F  Q  R  A  *  R  S  F  G  S  C  K  N  V  C  T  I  Y  P  *  A  Y  N  K  D  P  S  N  I  V  V  S  P  K  E  T  G  Q  D  S  S  S  L  L  M  T  *  V  M  S  C  S  Q  I  *  I  I  D  C  V  S  R  H  F  F  C  K  A  M  L  L  G  L  F  K  S  K  S  P  H  N  L  V  C  K  *  S  A  A  F  *  H  *   </second_frame>
            <third_frame>   H  L  S   : D  P  L  M  T  P  L  N  W  R  I  R  L  Q  I  A  V  G  I  A  A  A  L  :  E  Y  L  H  F  F  C  D  P  P  M  Y  H  V  S  V  S  S  S  T  I  M  L  D  E  N  F  T  A  K  :  L  C  D  V  S  L  L  C  S  V  E  N  N  N  P  L  P  K  S  K  C  S  K   : E  C  G  N  E  I  C  K  Q  T  I  F  Q  L  G  L  L  I  L  E  L  V  T  G  Q  S  S  E  E  G  G  V  D  L  V  Q  W  V  Q  D  S  R  F  R  R  R  S  I  H  Q  M  I  D  P  D  L  G  D  S  Y  D  F  K  E  L  K  G  L  L  A  V  A  K  M  C  V  Q  S  I  H  K  P  T  I  K  T  P  Q  I  L  W  Y  L  Q  K  K  L  G  R  T  P  V  V  C  *  *  L  E  S  C  H  V  H  R  Y  R  S  *  I  V  *  V  D  I  F  F  V  K  L  C  Y  S  D  S  S  N  R  R  V  H  T  T  *  S  V  S  S  L  L  R  F  D  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94039" stop="94030"/>
                    <exon start="93931" stop="93864"/>
                    <exon start="93615" stop="93526"/>
                    <exon start="93403" stop="93334"/>
                    <exon start="93249" stop="92936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSDPLMTPLNWRIRLQIAVGIAAALEYLHFFCDPPMYHVSVSSSTIMLDENFTAKLCDVSLLCSVENNNPLPKSKCSKECGNEICKQTIFQLGLLILELVTGQSSEEGGVDLVQWVQDSRFRRRSIHQMIDPDLGDSYDFKELKGLLAVAKMCVQSIHKPTIKTPQILWYLQKKLGRTPVVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97941" PGL_stop="94054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97941" e_stop="97694"/>
            <exon e_start="95923" e_stop="95665"/>
            <exon e_start="94082" e_stop="94054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97941" e_stop="97694" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="97693" i_stop="95924" i_length="1770"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95923" e_stop="95665" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.868">
            <gDNA_intron_boundary i_start="95664" i_stop="94083" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94082" e_stop="94054" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97941" stop="97694"/>
              <exon start="95923" stop="95665"/>
              <exon start="94082" stop="94054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG : GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG : GTTCCTAGTCTTTGAAAATATGGAAAAAG</gDNA_template>
            <first_frame> L  I  V  E  P  K  K  V  S  I  Y  L  R  *  R  K  H  I  F  D  Y  *  S  Q  K  Q  Q  W  V  I  I  I  I  S  *  P  T  H  L  S  L  F  V  L  V  V  K  V  S  S  F  S  C  L  F  L  A  E  F  V  N  G  T  F  D  L  Q  N  *  A  S  Y  S  C  L  G  A  F  Q  I  S  F  R :   S  N  I  L  G  E  T  L  L  *  *  R  Y  K  E  S  N  *  W  F  *  E  N  C  L  Q  L  F  Q  N  S  C  L  Q  S  K  V  S  K  W  P  C  C  V  C  E  R  S  P  R  F  R  R  *  G  *  Y  G  L  L  Q  G  G  T  V  T  R  S  L  A  S  S  T  Y  C  C  T  *  W  V  L  L  R  P  *  E  :  V  P  S  L  *  K  Y  G  K   </first_frame>
            <second_frame>  *  *  *  S  Q  K  K  F  Q  F  T  *  D  K  E  S  I  Y  S  I  I  K  V  R  S  N  N  G  S  S  S  S  S  V  N  R  P  T  C  H  S  L  Y  *  L  *  K  F  L  L  F  L  V  F  F  L  Q  N  L  S  M  E  P  L  I  F  K  I  R  L  L  I  L  A  W  V  H  F  R  S  H  S   : G  P  I  S  L  V  K  H  F  S  N  K  D  I  K  K  A  T  D  G  F  R  R  I  V  Y  N  S  S  K  I  V  A  Y  R  A  K  F  Q  N  G  H  A  A  F  V  K  E  V  R  G  F  E  D  E  D  D  T  A  F  Y  R  E  V  Q  L  L  G  R  L  H  H  R  H  I  A  A  L  N  G  F  S  C  G  P  K  R :   F  L  V  F  E  N  M  E  K  </second_frame>
            <third_frame>   N  S  R  A  K  K  S  F  N  L  L  E  I  K  K  A  Y  I  R  L  L  K  S  E  A  T  M  G  H  H  H  H  Q  L  T  D  P  L  V  T  L  C  T  S  C  K  S  F  F  F  F  L  S  F  S  C  R  I  C  Q  W  N  L  *  S  S  K  L  G  F  L  F  L  L  G  C  I  S  D  L  I  Q  :  V  Q  Y  P  W  *  N  T  S  L  I  K  I  *  R  K  Q  L  M  V  L  G  E  L  F  T  T  L  P  K  *  L  L  T  E  Q  S  F  K  M  A  M  L  R  L  *  K  K  S  E  V  S  K  M  R  M  I  R  P  S  T  G  R  Y  S  Y  S  V  A  C  I  I  D  I  L  L  H  L  M  G  S  L  A  A  L  R   : G  S  *  S  L  K  I  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97802" stop="97694"/>
                    <exon start="95923" stop="95665"/>
                    <exon start="94082" stop="94055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLFLVFFLQNLSMEPLIFKIRLLILAWVHFRSHSGPISLVKHFSNKDIKKATDGFRRIVYNSSKIVAYRAKFQNGHAAFVKEVRGFEDEDDTAFYREVQLLGRLHHRHIAALNGFSCGPKRFLVFENMEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 136 chains have been computed
$ 
$ memory statistics:
$ 229248 bytes spliced alignments in total
$ 70 spliced alignments have been stored
$ 3274 bytes was the average size of a spliced alignment
$ 25616 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1601 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 145 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:48:47
-->
