<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:56:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E338856" ref_strand="+" ref_description="SGN-E338856 	[cTOE-21-K7]">
      <seq>tttgtatagaaaggtattagggcaatccacaacattctttggctctgctcaaatttcatttgaggaataaaaaaaaatggtgatgtgggtatttggatatggatctctaatttggaagcctgggtttaactacgatgatcgtcttttcggttttatcaaaggctatcgtcgtgtcttttatcaaggcagtactgatcatagagggacaccagaattcccaggtagaacagtaacactggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="4623" stop="3610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4344" g_stop="4161" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4160" i_stop="3968" i_length="193">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3967" g_stop="3910" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="243" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E338856" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4344" e_stop="4161"/>
          <exon e_start="3967" e_stop="3910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATAGAAAGGTATTA-ACCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAGGTATGGCTTCTAATTTTTGTTTTGTATGTTTATTGAATTGCTTGTGAATGTTACAATGTCATATGAATAGTCAAAGTGAAAAGAATTAATTTTTAAGAACTATATGGAAATGTTTTGGATTTTAAGTATGATATATAGTTGGTCAAGTTAGTGGAGAGTTAATAGAAGTTTATATATATGTGTTGTTGTGTAGGCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCC</genome_strand>
        <mrna_strand>TTTGTATAGAAAGGTATTAGGGCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAG.................................................................................................................................................................................................GCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E555006" ref_strand="+" ref_description="SGN-E555006 	[cTSC-6-B9]">
      <seq>cggtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttgtgtcattaaatgctcgcttgaagcacacttaaactctgaagttttgtgaggcgcaatttagacgttccaccttgctgagatggcggttttgtgcaagcaccaagccacttagacctacacctcatcaccacgggtctgtctttaagagggcaaatcttggcaattaatatagttggcaaagcaatatagtttttgttaacaaaacgttattaatgaacttgttagtgatcgggatcaagaaactagagaactaataaagcactgctaactaactttttttttttaaaaaaatgtacatgtttgcatccaattcttaagtttaatttggttcatgtactttttgcatctatattttgcctagttccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="6337" stop="11757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6637" g_stop="6727" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9539" g_stop="9756" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="309" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10791" g_stop="10824" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="343" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10825" i_stop="11090" i_length="266">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11091" g_stop="11460" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="713" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E555006" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6637" e_stop="6727"/>
          <exon e_start="9539" e_stop="9756"/>
          <exon e_start="10791" e_stop="10824"/>
          <exon e_start="11091" e_stop="11460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTT</genome_strand>
        <mrna_strand>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG..........................................................................................................................................................................................................................................................................TGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E333161" ref_strand="+" ref_description="SGN-E333161 	[cTOD-19-J20]">
      <seq>ggtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggttgtacatgctaaagatgcagatcgatcacatttgctggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgncattgcactttgtgaagataatgcagtttactattggcacagggcagctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="6338" stop="17926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6638" g_stop="6727" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9539" g_stop="9795" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="347" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9796" i_stop="10790" i_length="995">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10791" g_stop="10824" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="381" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12982" g_stop="13118" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="518" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15789" g_stop="15855" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="585" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15856" i_stop="17516" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17517" g_stop="17616" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="685" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E333161" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6638" e_stop="6727"/>
          <exon e_start="9539" e_stop="9795"/>
          <exon e_start="10791" e_stop="10824"/>
          <exon e_start="12982" e_stop="13118"/>
          <exon e_start="15789" e_stop="15855"/>
          <exon e_start="17517" e_stop="17616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</genome_strand>
        <mrna_strand>GGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGNCATTGCACTTTGTGAAGATAATGCAGTTTACTATTGGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E374597" ref_strand="+" ref_description="SGN-E374597 	[TUS-15-N7]">
      <seq>gtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgcttttaccccagatccaacaatatgaagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="6351" stop="17932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6651" g_stop="6727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9539" g_stop="9756" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="295" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10791" g_stop="10824" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="329" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12982" g_stop="13118" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="466" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15789" g_stop="15855" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="533" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15856" i_stop="17516" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17517" g_stop="17616" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="633" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E374597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6651" e_stop="6727"/>
          <exon e_start="9539" e_stop="9756"/>
          <exon e_start="10791" e_stop="10824"/>
          <exon e_start="12982" e_stop="13118"/>
          <exon e_start="15789" e_stop="15855"/>
          <exon e_start="17517" e_stop="17616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</genome_strand>
        <mrna_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E204857" ref_strand="+" ref_description="SGN-E204857 	[cLEC-14-L11]">
      <seq>gtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="6351" stop="16151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6651" g_stop="6727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9539" g_stop="9756" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="295" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10791" g_stop="10824" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="329" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12982" g_stop="13118" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="466" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15789" g_stop="15851" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="529" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E204857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6651" e_stop="6727"/>
          <exon e_start="9539" e_stop="9756"/>
          <exon e_start="10791" e_stop="10824"/>
          <exon e_start="12982" e_stop="13118"/>
          <exon e_start="15789" e_stop="15851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCA</genome_strand>
        <mrna_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E251795" ref_strand="+" ref_description="SGN-E251795 	[cLEG-15-P6]">
      <seq>tggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctcccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcataggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagctgaccaaagccaaagaagtgtcgatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaacgccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctctgggcagatttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="6356" stop="17874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6656" g_stop="6727" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9539" g_stop="9756" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="290" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10791" g_stop="10824" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="324" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12982" g_stop="13118" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="461" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15789" g_stop="15855" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15856" i_stop="17516" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17517" g_stop="17574" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="586" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E251795" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6656" e_stop="6727"/>
          <exon e_start="9539" e_stop="9756"/>
          <exon e_start="10791" e_stop="10824"/>
          <exon e_start="12982" e_stop="13118"/>
          <exon e_start="15789" e_stop="15855"/>
          <exon e_start="17517" e_stop="17574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGC</genome_strand>
        <mrna_strand>TGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTCCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCATAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGCTGACCAAAGCCAAAGAAGTGTCGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTCTGGGCAGATTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 	[cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="22917" stop="22081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22617" g_stop="22381" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22617" e_stop="22381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 	[cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="23442" stop="22173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23142" g_stop="22851" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22850" i_stop="22700" i_length="151">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22699" g_stop="22473" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23142" e_stop="22851"/>
          <exon e_start="22699" e_stop="22473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTAC-TTGTTAATGATGATGCCTTGGTACAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATTGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGATGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACTGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTC-ACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG.......................................................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGC-AATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 	[cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="25458" stop="26447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25758" g_stop="26147" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25758" e_stop="26147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACGACGGATTCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGGCCGTCACAGACCCTTCAAAGAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACTGCGTAATCCCAGGCTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGGCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCAATTTCTT-GAGGGTTAAAAGAGATAACCTTGAATCAATT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAA-CCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E345032" ref_strand="+" ref_description="SGN-E345032 	[cTOF-22-B16]">
      <seq>ttggcaagcaaagtcggagacgcagtaagcaaagcgctgaacagcaacaaagtgttgaatgtagtgttaatgagtgcatttggattgctatgtatgagatcagtgcagcaacagaagaatatggaagttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="29839" stop="36528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30139" g_stop="30436" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30437" i_stop="35833" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35834" g_stop="36228" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="693" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E345032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30139" e_stop="30436"/>
          <exon e_start="35834" e_stop="36228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTC</genome_strand>
        <mrna_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E342384" ref_strand="+" ref_description="SGN-E342384 	[cTOF-8-N8]">
      <seq>tgtatgagatcagtgcagcaacagaagaatatggaagttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttaccagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaattttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgaggctgagtttcactatctatcaaccaaatatttatgagttcatgcatttgggatgtttgattgattcaccttcagtttaggcatggggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="29929" stop="36616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30229" g_stop="30436" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30437" i_stop="35833" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35834" g_stop="36318" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="698" r_length="490" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E342384" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30229" e_stop="30436"/>
          <exon e_start="35834" e_stop="36318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTA-CAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAA-TTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGA-GCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTT-GGATGTTTGATTGATTCCACTTCAGTTTAGGCAT-GGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACT</genome_strand>
        <mrna_strand>TGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACCAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGGATGTTTGATTGATTCACCTTCAGTTTAGGCATGGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E342885" ref_strand="+" ref_description="SGN-E342885 	[cTOF-11-E15]">
      <seq>ttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggacctatgccatgagctgagtttcactatctatcaaccaaatattttatgagttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="29966" stop="36504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30266" g_stop="30436" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30437" i_stop="35833" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35834" g_stop="36195" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="534" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E342885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30266" e_stop="30436"/>
          <exon e_start="35834" e_stop="36195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGA-CTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTT</genome_strand>
        <mrna_strand>TTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACCTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E233950" ref_strand="-" ref_description="SGN-E233950 	[cLEL-8-H22]">
      <seq>atcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcagtttaggcatgggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="35562" stop="36616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35862" g_stop="36316" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36317" i_stop="36567" i_length="251">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36568" g_stop="36582" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="470" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E233950" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233950" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35862" e_stop="36316"/>
          <exon e_start="36568" e_stop="36582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACTTATTTAGTGATCATGCAGCTTACCTCAACTTATTTGGCACTGAGGTTTGATAGTTGTTGTGATCAAATTTGTTACCTAAAGGTGGCTATACAAACAAGTGAAAAATTACCTAAGTAGACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAA</genome_strand>
        <mrna_strand>ATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA...........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E234372" ref_strand="-" ref_description="SGN-E234372 	[cLEL-8-H22]">
      <seq>actcagatctgtgaaatatcatgcttcagttagtagaatggaaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcagtttaggcatgggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="35653" stop="36616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35953" g_stop="36316" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36317" i_stop="36567" i_length="251">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36568" g_stop="36582" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="379" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E234372" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35953" e_stop="36316"/>
          <exon e_start="36568" e_stop="36582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACTTATTTAGTGATCATGCAGCTTACCTCAACTTATTTGGCACTGAGGTTTGATAGTTGTTGTGATCAAATTTGTTACCTAAAGGTGGCTATACAAACAAGTGAAAAATTACCTAAGTAGACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAA</genome_strand>
        <mrna_strand>ACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGAAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA...........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E224271" ref_strand="+" ref_description="SGN-E224271 	[cLEL-19-B8]">
      <seq>tttttttttttttttttacaacatacaagtgtaactattatactttaaaaataccatcaaataatcttttcaatgaaatgaggttatgttaacctgttgtaaatacctatcaaatgacatccttatatgcaggaactagaacaaaaatttgagtaaataaagcactgataaggggagaagtgaggggtcgaataatctatcttctgcaaaattgatgaaacctcttcatctgtgattttaaaggggttatctttggtcttgttctttctcatgnattagaggaacagattccatcttgttctctggcgtacgaggagactctcgagcatgttgtgataggatgtgccttacataaccataaaatgtacacccaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="17593" stop="37112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36436" g_stop="36812" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E224271" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36436" e_stop="36812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAATTTGAGTAAATAAAGCACTGATAAGGGGAGAAGTGAGGGGTCGAATAATCTATCTTCTGCAAAATTGATGAAACCTCTTCATCTGTGATTTTAAAGGGGTTATCTTTGGTCTTGTTCTTTCTCATGTATTAGAGGAACAGATTCCATCTTGTTCTCTGGCGTACGAGGAGACTCTCGAGCATGTTGTGATAGGATGTGCCTCACATAACCATAAAATGTACACCCAACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAATTTGAGTAAATAAAGCACTGATAAGGGGAGAAGTGAGGGGTCGAATAATCTATCTTCTGCAAAATTGATGAAACCTCTTCATCTGTGATTTTAAAGGGGTTATCTTTGGTCTTGTTCTTTCTCATGNATTAGAGGAACAGATTCCATCTTGTTCTCTGGCGTACGAGGAGACTCTCGAGCATGTTGTGATAGGATGTGCCTTACATAACCATAAAATGTACACCCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E223861" ref_strand="+" ref_description="SGN-E223861 	[cLEL-19-B8]">
      <seq>tttttttttttttttttacaacatacaagtgtaactattatactttaaaaataccatcaaataatcttttcaatgaaatgaggttatgttaacctgttgtaaatacctatcagatgacatccttatatgcaggaactagaacaaaaatttgagtaaataaagcactgataaggggagaagtgaggggtcgaataatttattttctgcaaaatagatgaaacctcttcatctgtgattttaaaggggttatctttggtcttgttctttcccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="17593" stop="37007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36436" g_stop="36709" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E223861" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36436" e_stop="36709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAATTTGAGTAAATAAAGCACTGATAAGGGGAGAAGTGAGGGGTCGAATAATCTATCTTCTGCAAAATTGATGAAACCTCTTCATCTGTGATTTTAAAGGGGTTATCTTTGGTCTTGTTCTTTCTCATGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAGATGACATCCTTATATGCAGGAACTAGAACAAAAATTTGAGTAAATAAAGCACTGATAAGGGGAGAAGTGAGGGGTCGAATAATTTATTTTCTGCAAAATAGATGAAACCTCTTCATCTGTGATTTTAAAGGGGTTATCTTTGGTCTTGTTCTTTCCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E547510" ref_strand="+" ref_description="SGN-E547510 	[TUS-71-G21]">
      <seq>gccctacaggcgtgcctatagttagagaaaaatggaggaaactgtattgtgccaatggactgttattagatccatttttgctattcttcaatggtggggtttcaatgttgctgttattatcatgaacaaatggatctttcagaaattggagtttaaatttcctttgacagtatcttgcgtgcacttcatatgctcagctattggtgcatacctggtaattaaagtgctgaaacttaaaccactcatcgtggtcgaacccacagatcagtggagaagaatttttccgatgtcatttgtgttttgtatcaacatagtcttggggaatgtaagtttgcgatatattcctgtctcttttatgcagaccataaagtcatttactcctgcaacaacagtgattttgcagtggctagtttggaggaagagctttgaatggaggatctggacttccttgattcccattgttggaggaattcttcttacttctattactgagctcagtttcaacacttttggattttgcgctgctttgtttggttgccttgctacttcgacaaaaactattctagcagagtcgttgttgcatggttacaaatttgacagtataaacacagtatactacatggctccctatgcaactatgatactggctctgccgtctttactctttagaggagctggggttgtagaatggttatacactttcccctcagtcgttctatccatgcttcttanttttctctccggagtgctagctttctgcctaacttctctatcttctatgttatcactccacgactgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="39391" stop="36767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39091" g_stop="38950" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38949" i_stop="37992" i_length="958">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37991" g_stop="37742" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="392" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37741" i_stop="37662" i_length="80">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37661" g_stop="37454" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="600" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37453" i_stop="37271" i_length="183">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37270" g_stop="37067" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="802" r_length="202" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E547510" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39091" e_stop="38950"/>
          <exon e_start="37991" e_stop="37742"/>
          <exon e_start="37661" e_stop="37454"/>
          <exon e_start="37270" e_stop="37067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAGAATGTATTGTGCCAATGGAGTGTTGTTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAGGTATCCTTTTTTTAACAACATTATGATTTTAATTTGCGATCTCAAATTGTGCTTCATTACATGTTTTGTATCTTTAGTTTTTGTATTGTTCGTTTGTTACCTTTTCTTTTATGTCGTCATAACTAATAAAATGTTGCCACATTAAAGTAGAAATTTGTTAGAAGATTTGATTTTGCCACCTGGGTTCTTCTATGTTATGGCCAGAGGCGGAACCAAGATTATGAGTTTTGGGGTTTCAAATCAATTTCACATGATAATATACATATTGTTATTTAATTTTCTAATAGGGAAAATGAACAACTATCCCGTAGGCTGTGACAGAAATTCCAGAGATACAACTTAACTAAACTAAGATACTATTATCCTGAAATTATTTTTTATAAAAAAATTTGTGCACATTTTGTCTTACGTGGCACATTCCGTGACTCCACGCAATTGAGCCGCGTGAAAGATATTTGGATACTACATAAACCAAAAAGGTGCACAAAATTACCAAAAAAATAAGTTTGGGGGTAATAGGAGCTTAGTTTAGTTAATGTATGTCTCTGAGATTTCGGTTATAGTCTACGGGATACTTGTGTATTTTCCCTTTCCAATATTATAGGGTCTACAAATAAGCTAGTGGGTTCGTTCGAACCCATGAACCCCCACCTAGTTGCGCCTCTGAGAAGGTCCAATGCTTCATTGGCGACTCTTGGCTCTTAGAGGGTCCCACACGTACCCGTTCACGTTTCTGAAGAGTCCGAGCAACATTAGCTTGAACCTTCACTCTCTTCAGGCTTCCTCTATGAGTTAAATCACGACGCCTCTAAAATGATAACGGACCTCAATTTGTACACCAGTGTCACTGTTCTTCCACCATTACCTTTCTACAAATTCCGACCCCAGTTTTAGGAGATGTGTAATGCTTTCGTGCAGTATCGTTGCTTATGATTGTGTACTCTACTCATCTTTGCAGAAATTGGTGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCGTAAAGTCATTTACTCCTGCTACAACAGGTAAAGCTTGAGCCACAAAGCCCTTCTGAGGCCTCTACCTAATCACTGCTTAGCTTATTTTTTTGCGTATGTTTGAACAGTGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTAGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCTACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGGTACAAATTTGACAGGTTAGTACCTACCTCTTCCTCCCCCTCCTTGTAGTCGTCCCAATCAAAAGGTATTGCTTGAGATGTAACAAAAACTTCTATAGATAACAAATCAGGTGACCAAACGTCAATGGAGTGACAGGCTTTCAGTGCTGCTGCTAGTATATGTGTCGTAACTAATGTTGGTTTATTATTGTTCTCCAGTATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTGAAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCTTCAGTCGTTCCATCCATGCTTCTTATTTTTCTCTCCGGAGTGCTAGCTTTCTGCCTTAACTTCTCTATCTTCTATGTTATCCACTCCACGACTGCTGT</genome_strand>
        <mrna_strand>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAAACTGTATTGTGCCAATGGACTGTTATTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCATAAAGTCATTTACTCCTGCAACAACAG................................................................................TGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTTGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCGACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGTTACAAATTTGACAG.......................................................................................................................................................................................TATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTAGAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCCTCAGTCGTTCTATCCATGCTTCTTANTTTTCTCTCCGGAGTGCTAGCTTTCTGCC-TAACTTCTCTATCTTCTATGTTAT-CACTCCACGACTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E311517" ref_strand="+" ref_description="SGN-E311517 	[cTOA-6-E7]">
      <seq>ctcatcactgtcactccgtacccctcccccaccattttcaagaaaacccctttactctttcaaaccccaaatctcccattttgctctctccacttgcagagacaagaattcattttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="43586" stop="44608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43886" g_stop="44308" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E311517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43886" e_stop="44308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATAC</genome_strand>
        <mrna_strand>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCA-TTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E318256" ref_strand="+" ref_description="SGN-E318256 	[cTOA-29-G6]">
      <seq>ccaaatctcccattttgctctctccacttgcagagacaagaattcatttttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgntgttagagctgttgatactcttgcagggattgctgctangtactctaccactcttactgaccttatgaatgttaatggctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="43652" stop="44980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43952" g_stop="44680" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E318256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43952" e_stop="44680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAAT-GCTTTGG</genome_strand>
        <mrna_strand>CCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGNTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTANGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E253841" ref_strand="+" ref_description="SGN-E253841 	[cLEG-28-L11]">
      <seq>aagaattcatttttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="43689" stop="44898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43989" g_stop="44598" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E253841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43989" e_stop="44598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTT</genome_strand>
        <mrna_strand>AAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E246427" ref_strand="+" ref_description="SGN-E246427 	[cLEF-52-I6]">
      <seq>aagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgttgttagagctgttgatactcttgcagggattgctgctaggtactctaccactcttactgaccttatgaatgttaatgctttgggaggtccttctattaaggagggtgacattctttccattcctttgtctgcttgtacgtctagcttcccaagatctgcctcggattatggcttatctgttgcgaatgggagctattctattacagctagccactgtgtgcaatgcagttgtggaccagggggtcggaatttgtactgcatgccagcttctttagcagtttcttgctcaagcatgcagtgcaagaacagcaatctcatgctcggaaatgttaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="44089" stop="46707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44389" g_stop="44728" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44729" i_stop="46110" i_length="1382">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46111" g_stop="46228" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="458" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46229" i_stop="46319" i_length="91">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46320" g_stop="46407" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="546" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E246427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44389" e_stop="44728"/>
          <exon e_start="46111" e_stop="46228"/>
          <exon e_start="46320" e_stop="46407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTGGTGAGCAAAATGCAACCCACTTTTTTTCTTTGTTTTTATGGCTTCTTTATTGTGTTTTGCGTGTGATTATGGTATGCAGGTGTCAAAGTGTTTGATTTTCCATCTGTATTACTCCCTCCCCTCCATTTCAATTTATTCTCTTGTTTCCTAAACATGTCCAAGTTAGACGTTAGAATTAAAGAACGACCAAAAAAGGAAAAAAAAAACATTTTTCAAAACAGAATGAAAAGGTAACTAAGGCAAACTTAATGGAATGGAGGGAGTATTCAACTCTAGCCTTATAAATATTGTATGTGTAGAGTTGTGTATGCAAACATTATCGCTATCTTGTATACCATATGTGTGTCTGTGCTTGATGGGTAGAACACATATCATAAAGTATGTGTATCTACATTTAATGTAGCTTCTTGGTACTCAGCTTTGAGGGGCCAAGTTGTCTAAGGAGGCATGCTTGCCATGCTATGGGTGAATATGTTCATTCTAGGTTTGCGGGTGTTATACATATGAAAGTAGGTTCCATGTAACATTGTAATGCATGTATAGTATGTAATTTGAACTAATGAAGATTTCATGTCCAGCATAAGAACCCTTCTTTGTGTCTACCGTTTTCCTCTTCTGTAATCTAATAAAGCAAGCAGTAGTGAGCAAGCTAGGATTATTTAGACAATGTTTATTACTGAAGTTACTTTTAATAGTTGATGTTATGCTTAGGTTCATGAAGCAAATGTTGAGTATAAGTTTGATATGTTTTTGAGTGATTTTTTATTTCCTCTTGAATGAAAATGCATCTCTTTGATATTCTTGATGAGAATTGCTTACGATGACCCAGTATGATTATACTTCGTAACTGTATGCATCAGATTATGAAGTCAAAAGCTGAGTCACTTATAACGATTTTTTTCTTTTTCTTGTCACTAGATGTATGTGTCTGTGAAATGCTTGAAGTTATTGAAAAGAGATGTTACTGTAGCATATCAAGAATTTTTTAACACTTGTAAGGTCACTAAGAGAACAGAACACGAATCCTTATTCGTAGATTGAATATTGCATTTCTCAGTTCAGTAATAACATCGTTTCTGGCTAAATCAGAAACAGATACTCGCTCCATTTCTTGTATTTTGGAAGTATTTCTTTGTCTAAGTTTTCATTGTTTCATGTTCTTTATTCTTCTTGCGGTTGTAATTCATCTAGTAGAAACTGCTTTATTGGAGATTTCATAAAAATGGCTCTGTCGTAGTATTTCGTTGTTGGATATCGAGTGTTTATAAACAAAGGTACAACTTTAATTATATTTAACTTAGCACAAGCATTGCAGTAAAGCTACTTAATTTCATTGATGATAGATGTTTGGTAATGATAGATGCTTTTTCTTCTCACTGCAGCTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAAGTAAGTCAGCAGATTATATGCTTTCAATTTCATTTGCAGTTATCCTGGTCTGTCGAAAGTTCTGATCGTGATATTGCTGGTTGTTTTGCAGTTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATA</genome_strand>
        <mrna_strand>AAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAA...........................................................................................TTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E333694" ref_strand="+" ref_description="SGN-E333694 	[cTOD-22-E7]">
      <seq>aaaatgcttattttttgagcttagatggatagttgagtggatttgaaggaaaactgaatgaacttgaagccaagttatagttgttgttaaatgacagtgtgtttggacagctggttgtattctgtagggtatagatggacattgtactatgagcatttaggagattaaatgcttattgagatggaaaagaggaaatggttgtggaaaaggagaccttccgataagagccctggtgaaacggagagttctggttctttatcttcatattcggagagatactccgatgagcaggatgcactaaaagaatttcctgaccatgacaaacagtcaccagaggttacctcaaaagctgcattcgttgatgatgaatccaaggaaagcttgagatgcttgacagagaaattatcagctgctcttgttaatgttagcgccaaagaagacttagttaagcagcatgctaaagttgccgaaaaagctatcgcaggttggggaaaggcagaaaatgaagttgcagttctaaagcaacaactagatgcggctgtgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="49008" stop="52242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49308" g_stop="49441" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49442" i_stop="49566" i_length="125">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49567" g_stop="49723" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="291" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49724" i_stop="51298" i_length="1575">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51299" g_stop="51491" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="484" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51492" i_stop="51878" i_length="387">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51879" g_stop="51942" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="548" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E333694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49308" e_stop="49441"/>
          <exon e_start="49567" e_stop="49723"/>
          <exon e_start="51299" e_stop="51491"/>
          <exon e_start="51879" e_stop="51942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAGGTATATTAGTTGTTTCTTTGCATTTGGGATGGAGCTTAATCATATCAGAGGTTATCTGTGTCATTTTTCTGTTGGACTAATGTCTCTTTGTGTTGTTATTGATTGAGGGTATCAATTATATGCAGATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAGGTAAAAGGCTTAAAGAGAAAGAGTTTTTCTTTTTTTGGTCTTTCAGTTAATTGTGCTGATATGGAATAATCTTATATCACATGGTTGGAAAAGATAAGCTGCTGTTTTTTAGAAACCTCACATTTAATCTTCACTTGCACCCCGGGTTTTAAATTGATAATGGTTGAGGTAAATATGCAGCTCAAATACTGACAGCTGAAAGTTTTTCGTGTCCGAGTACTGTATTTTCTTTCTACTTGCATATATATATATATATATGTACCAGTTTTGATTTTTGAAATATTTGGAAGGTCATTGGTCTTTATTGATCATCATCAGGTTTTCGCTATTGGTTTAGTTATAGAAATGACTAGCTTATAGTTATTGTAGACAAATAATCACAATAGATAGCCCCCCATATTGCTGAACCACCAGACTGCCCGTCATCATCTAGAGAACGTCCCTTCTCCGTGGTTTATCCAATTTCTACATTTAAATTGAGCCATAATTCTTCTCCCCTGTACTTCTTAACATTTATCTATTGTAAATGTTTACCTAAATGTTGGATTAGTATATAAATATTGTTATTTTATTGTCGTTTTTTCCTTTCAATCCTGCTTTGGTTACATTTTTTTGAGCTGAGGATCTATTAGAAATAACCTCTCTACCCCCACAAAGGTAGTGGTAAGGTCTGCATACATCCTACCCTACTTGTGGGGCTACACTTGTTCTCATTGAATTAGTATAAAGTTCCAGTTTTTAAGGTGCTTGGGAAGAATTATGTTTCATGACTTTATTAAAGAACACTAAGTTCCTCATAGAAGGGATTTATGATATCTATAAAACTAAATTGGTATAATACTAATTTGTTGTTTAATGATTCTGAGGTGATCTTTTTAAGAGTTTAAGGTTTTATTAAATGAAAAGTCTGCAGTCCAAGTTTGTAGCTAATTCACAAATCTCAGATCTATATGAGGCGAAAAGCAACATAAAAGAGATTGTTGTGATAGAATTTTGAGTATGTCAAACAGTTTATTTATCTGCAGAGCATCTCCTGAAATAGCAAATGTAAATTGCAGAGGCCGATTGAATAACAATTTATATGTGCAGCTAAAAACAGTAGTGGCTGAAGATTGACCTCTAGTTTGGTGCCTTGATATGCTTTCCAGTATAAAGATCTGTGCTCAGGTTAGATGGTAGCAGATGATGCAAGATCTTGGTTTGGAAAGAAAGTGCCAAAAGCTTTCATAAGTGATGTTTCTTACCGTAGTCAGCAGTTTCGTCCTGATAAGGAATATACTTTCACCCTTGACCCTTTTTTTTTGGTTGAGATTAGATGCTCTCAGTAAGTGTAAAGATGTTCCTATAGCTTTGTTAAAAGAAATATTGTCCTTATCACTGCACCATCCATTCCTTCTTTGTAGGGTCATTTGTCTCATATTGAAAATCATTCAATAGAAATCTTACTGACTAGCTGCCAGAGAACCATCTCTGTGCAATCTAGAACATTTTCTTGTCAAGAAAAGCTTTAACATTTTTAGCTATTGTATTACTTCTTTTACGAGAAAGGATCACCTGTTCTTTTCATTGAAGCAGGATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCA</genome_strand>
        <mrna_strand>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAG.............................................................................................................................ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAAAAGCTATCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAACAACTAGATGCGGCTGTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E344816" ref_strand="+" ref_description="SGN-E344816 	[cTOF-21-C2]">
      <seq>atcgatatgatggatgatttcttggagatggagcaacttgctgcattatctgaaactgcaaacaagacaccttcagtaacttctgatgctgttcctcatgattctcccaatattgagaaccctttggcagcagaatacaattccatttcacaaagggtggttgaattagaacaaaagctggagaagattgaagcagagaaagctgaactggagaatgctttcaacgagagtcaagatgcccttaaagtgtcctctttgcagcttaaggaaactcaaaccaggttggaagggctgcagaaggagctagatgtggtaaatgagtcaaaagagttgctcgagtttcaactctatggcatggaggtagaagcacggacaatgtctgtaaatattgattctttgaagacggaagttgaaaaagaaaaatctttgtcatcagaaatggaagctaaatgtcatgaattggaaaacgaccttagaaaaaaatcccaggaagctgaagctcagcaaacttctggttcaaatagtgaattgaaaataaaacaggaggatttagccgtggctgctgacaagcttgcagaatgccagaaaacaattgcatcccttgggaaacagctacaatccctagctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="52331" stop="53675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52631" g_stop="53173" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53174" i_stop="53286" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53287" g_stop="53375" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="632" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E344816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52631" e_stop="53173"/>
          <exon e_start="53287" e_stop="53375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAGGTAGCTCTTTCTCTCAACCTATCTTCCGTTGTTTGTCATTTATGTATAGACACATCGATGTGAAGAAAAGAAGATGAAAATTAATAATGGTATGTAAACTTTCTCACTAGCAGGAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCT</genome_strand>
        <mrna_strand>ATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG.................................................................................................................GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E346658" ref_strand="+" ref_description="SGN-E346658 	[cTOF-28-I5]">
      <seq>tcgatatgatggatgctttcttggagaaggagcaacttgctgcattatctgaaactgcaaacaagacaccttcagtaacttctgatgctgttcctcatgattctcccaatattgagaaccctttggcagcagaataccaattccatttcacaaagggtggttgaattagaaccaaagctggagaagattgaagcagaaaaagctgaactggagaatgctttcaacgagagtcaagaatgcccttaaagtgtcctctttgcagcttaagggaaactcaaaccaggttggaagggctgcagaaggagctagatgtggtaaatgagtcaaaagagttgctcgagtttcaactctatggcatggaggtagaagcacggacaatgtctgtaaatattgattctttgaaaacggaagttgaaaaagaaaaatctttgtcatcagaaatggaagctaaatgtcatgaattggaaaacgaccttagaaaaaaatcccaggaagctgaagctcagcaaacntctggttcaaatagtgaattgaaaataaaacaggaggatttagccgtggctgctgacaagcttgcagaatgccagaaaacaattgcatcccttgggaaacagctacaatccctagctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="52332" stop="53674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52632" g_stop="53173" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53174" i_stop="53286" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53287" g_stop="53374" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="633" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E346658" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52632" e_stop="53173"/>
          <exon e_start="53287" e_stop="53374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATA-CAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAG-ATGCCCTTAAAGTGTCCTCTTTGCAGCTTAA-GGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAGGTAGCTCTTTCTCTCAACCTATCTTCCGTTGTTTGTCATTTATGTATAGACACATCGATGTGAAGAAAAGAAGATGAAAATTAATAATGGTATGTAAACTTTCTCACTAGCAGGAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTC</genome_strand>
        <mrna_strand>TCGATATGATGGATGCTTTCTTGGAGAAGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACCAATTCCATTTCACAAAGGGTGGTTGAATTAGAACCAAAGCTGGAGAAGATTGAAGCAGAAAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGAATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAAACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACNTCTGGTTCAAATAGTGAATTGAAAATAAAACAG.................................................................................................................GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E236803" ref_strand="-" ref_description="SGN-E236803 	[cLEL-7-G13]">
      <seq>gagtcattctacaaacgaaaatgaaggggaatctccagcatcttcatcttcatcatctacttcatccactactcaggctagcactggcaaaagcaaaaatggctttgggaagttgttttctcggagtaagagtggagttccaactctaaaagttatcgaggataaataaatagaggaagaatgttgagaaggttggaacataatttgtaaaaggtttatcagttacatggctgatcaaattctgtttgataagcaaactgtttgcttcaatagttatgatgaatatcttgagaagcttcaaatagcaatagacaccttgaatttacactgctttggctaatctccctctttttatttaatccatttcagtatatttttgtctccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="53220" stop="54204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53520" g_stop="53897" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="401"/>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E236803" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236803" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53520" e_stop="53897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</genome_strand>
        <mrna_strand>GAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E236937" ref_strand="-" ref_description="SGN-E236937 	[cLEL-7-G13]">
      <seq>tagcactggcaaaagcaaaaatggctttgaaaagttgttttctcggagtaagaagtggaagttccaactctaaaagttatcgaggataaataaatagagaaagaatgttgagaaggttggaacataatttgtaaaaggtttatcagttacatggctgatcaaattctgtttgataagcaaactgtttgcttcaatagttatgatgaatatcttgagaagcttcaaatagcaatagacaccttgaatttacactgctttggctaatctccctctttttatttaatccatttcagtatatttttgtatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="53298" stop="54204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53598" g_stop="53897" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="325"/>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E236937" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236937" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53598" e_stop="53897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAG-AGTGG-AGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</genome_strand>
        <mrna_strand>TAGCACTGGCAAAAGCAAAAATGGCTTTGAAAAGTTGTTTTCTCGGAGTAAGAAGTGGAAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGAAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E347613" ref_strand="+" ref_description="SGN-E347613 	[cTOF-26-F23]">
      <seq>tttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaagtttgtcaaagggagctttggagtatttgctgtgtatggggaggagggtgggattccagataagaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="54937" stop="57497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55237" g_stop="55286" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55287" i_stop="55904" i_length="618">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55905" g_stop="56141" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56142" i_stop="56374" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56375" g_stop="56479" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56480" i_stop="56665" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56666" g_stop="56941" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="668" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56942" i_stop="57144" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57145" g_stop="57197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="721" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E347613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55237" e_stop="55286"/>
          <exon e_start="55905" e_stop="56141"/>
          <exon e_start="56375" e_stop="56479"/>
          <exon e_start="56666" e_stop="56941"/>
          <exon e_start="57145" e_stop="57197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGG</genome_strand>
        <mrna_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E244364" ref_strand="+" ref_description="SGN-E244364 	[cLEF-3-O21]">
      <seq>aaagttcctggttgacactgtgtgatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtataatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatggtaccgattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="55669" stop="57243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55969" g_stop="56141" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56142" i_stop="56374" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56375" g_stop="56479" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="278" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56480" i_stop="56665" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56666" g_stop="56941" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="554" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56942" i_stop="57144" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57145" g_stop="57157" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="567" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E244364" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55969" e_stop="56141"/>
          <exon e_start="56375" e_stop="56479"/>
          <exon e_start="56666" e_stop="56941"/>
          <exon e_start="57145" e_stop="57157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATT</genome_strand>
        <mrna_strand>AAAGTTCCTGGTTGACACTGTGTGATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTATAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................GTACCGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E264785" ref_strand="+" ref_description="SGN-E264785 	[cLEG-71-J13]">
      <seq>tttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataagcttctgcgagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaaggcagcaaccacgaagaacgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="55689" stop="57151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55989" g_stop="56141" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56142" i_stop="56374" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56375" g_stop="56479" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="258" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56480" i_stop="56665" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56666" g_stop="56851" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="444" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E264785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55989" e_stop="56141"/>
          <exon e_start="56375" e_stop="56479"/>
          <exon e_start="56666" e_stop="56851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAAT</genome_strand>
        <mrna_strand>TTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAAGCTTCTGCGAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGGCAGCAACCACGAAGAACGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E320301" ref_strand="+" ref_description="SGN-E320301 	[cTOB-21-F12]">
      <seq>ttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcaactttcacacatacatcaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="56430" stop="58090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56730" g_stop="56941" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56942" i_stop="57144" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57145" g_stop="57292" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="360" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57293" i_stop="57422" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57423" g_stop="57607" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="545" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57608" i_stop="57699" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57700" g_stop="57790" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="636" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E320301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56730" e_stop="56941"/>
          <exon e_start="57145" e_stop="57292"/>
          <exon e_start="57423" e_stop="57607"/>
          <exon e_start="57700" e_stop="57790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTG</genome_strand>
        <mrna_strand>TTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCAACTTTCACACATACATCAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E272835" ref_strand="+" ref_description="SGN-E272835 	[cLEM-25-A20]">
      <seq>aacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="56542" stop="58037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56842" g_stop="56941" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56942" i_stop="57144" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57145" g_stop="57292" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="248" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57293" i_stop="57422" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57423" g_stop="57607" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="433" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57608" i_stop="57699" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57700" g_stop="57737" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E272835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56842" e_stop="56941"/>
          <exon e_start="57145" e_stop="57292"/>
          <exon e_start="57423" e_stop="57607"/>
          <exon e_start="57700" e_stop="57737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTT</genome_strand>
        <mrna_strand>AACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E276100" ref_strand="+" ref_description="SGN-E276100 	[cLEN-12-L1]">
      <seq>gaaaatgccatcaacaagattactgaatgtcaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgagatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacaganaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="57154" stop="58616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57454" g_stop="57607" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57608" i_stop="57699" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57700" g_stop="57812" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57813" i_stop="58045" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58046" g_stop="58316" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="538" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E276100" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57454" e_stop="57607"/>
          <exon e_start="57700" e_stop="57812"/>
          <exon e_start="58046" e_stop="58316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</genome_strand>
        <mrna_strand>GAAAATGCCATCAACAAGATTACTGAATGTCAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGAGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGANAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E276106" ref_strand="+" ref_description="SGN-E276106 	[cLEN-12-N1]">
      <seq>gaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgggatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaaaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="57154" stop="58616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57454" g_stop="57607" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57608" i_stop="57699" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57700" g_stop="57812" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57813" i_stop="58045" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58046" g_stop="58316" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="538" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E276106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57454" e_stop="57607"/>
          <exon e_start="57700" e_stop="57812"/>
          <exon e_start="58046" e_stop="58316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</genome_strand>
        <mrna_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E548820" ref_strand="+" ref_description="SGN-E548820 	[TUS-64-L13]">
      <seq>ttcttttttttttttttttttttttttttttttttttttgcaaacagaacattaaccatttatataaatttataccagataatacacttaataagttcaacaaaatttacataggattagcatatagatacaacatggctttcttagaaagctacagcttagtaattaatagatagagttatcccatatacaactggggcaaaaacctcatcatgttaggcaggcttccaaactgggagcacttcttgaaacatctctagcatcagatctctatctgcctgtctgaaaaaattgttaatttcctccctaacatcataaatcttgccaaaatcgaacaaatacatcaagcaaccttttttcaatttatttagctgggaaagccaggcctcttgcagtctttcgaggacattacccgagttgatgtcttctaggagactttcctcacaagcattcttcaaatctacaatatcatacttgtttgccgcacccagtaatgccaatcggggcttccagaaatcctcttgttttatgggtccatacaagtaactaaaaagcgctgtgcatgattctgttgacatgtcttctatgtcgattatagaggactctttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="17590" stop="60779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59103" g_stop="59128" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.615"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59129" i_stop="59264" i_length="136">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59265" g_stop="59271" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="33" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59272" i_stop="59900" i_length="629">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59901" g_stop="60479" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="612" r_length="579" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E548820" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59103" e_stop="59128"/>
          <exon e_start="59265" e_stop="59271"/>
          <exon e_start="59901" e_stop="60479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGTAAGTATATTATTGTGGTCGATGTTCCTATGCTGAACAAGAGACAAAACTTGATGAAACAATCCATGTTTTCATTTCTGAGTCTTGGCTAGGAAAACTGAGCTCAAAGTTATGCAAGATGACCCTTTAAACACAGTAGCAGCAGATCCAAGAATCGTGTACTTCTGGACAATATGCAAATGCTCATTATAGTGTAGATGATGACCCAAACAACATATGGCGTAGTACCCTTGCTGAGTCTTGTGAAAAATTATTTCTTATGTAATATAACATTATCGAGGAAAAAATTAATTTAATGAAACCAACAACATAATCAGTGAAACGCCACGTACTCTGCAAATACAAAAATACACTACTAAATCCCATTTTTAGTTTCTACTAAGAATATTGGCTTGGATGGTTTCTACCAGTTTTCCAAGGGTTCAGCTGGCAAACAACAGAGAAATCCAAATCCAAGGTGCTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGTGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGTGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAGAAGTTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGTAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGTGCTTCCAGAAATCCTCTTGTTTTATGGTTCCATACAAGTAACTAAGAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</genome_strand>
        <mrna_strand>TTCTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................TTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGGGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGGGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAAAAATTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGGAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGGGCTTCCAGAAATCCTCTTGTTTTATGGGTCCATACAAGTAACTAAAAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E543085" ref_strand="+" ref_description="SGN-E543085 	[TUS-64-L13]">
      <seq>cagacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgcttcttagttacttgtatggaaccataaaacaagaggatttctggaaacaccgattggcattactgggtgcngcaaacaagtatgatattgtagatttgaagaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="63172" stop="60013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62872" g_stop="62764" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62763" i_stop="62684" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62683" g_stop="62532" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="261" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62531" i_stop="61127" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61126" g_stop="61011" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="377" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61010" i_stop="60689" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60688" g_stop="60313" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="753" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E543085" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62872" e_stop="62764"/>
          <exon e_start="62683" e_stop="62532"/>
          <exon e_start="61126" e_stop="61011"/>
          <exon e_start="60688" e_stop="60313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTT</genome_strand>
        <mrna_strand>CAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAACACCGATTGGCATTACTGGGTGCNGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E337401" ref_strand="+" ref_description="SGN-E337401 	[cTOE-18-G24]">
      <seq>caaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="63165" stop="60121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62865" g_stop="62764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62763" i_stop="62684" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62683" g_stop="62532" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="254" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62531" i_stop="61127" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61126" g_stop="61011" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="370" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61010" i_stop="60689" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60688" g_stop="60421" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="638" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E337401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62865" e_stop="62764"/>
          <exon e_start="62683" e_stop="62532"/>
          <exon e_start="61126" e_stop="61011"/>
          <exon e_start="60688" e_stop="60421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGC</genome_strand>
        <mrna_strand>CAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E303309" ref_strand="+" ref_description="SGN-E303309 	[cLEX-2-G13]">
      <seq>agacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctgtctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="63171" stop="60182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62871" g_stop="62764" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62763" i_stop="62684" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62683" g_stop="62532" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="260" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62531" i_stop="61127" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61126" g_stop="61011" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="376" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61010" i_stop="60689" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60688" g_stop="60482" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="583" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E303309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62871" e_stop="62764"/>
          <exon e_start="62683" e_stop="62532"/>
          <exon e_start="61126" e_stop="61011"/>
          <exon e_start="60688" e_stop="60482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTC</genome_strand>
        <mrna_strand>AGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTGTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E239310" ref_strand="-" ref_description="SGN-E239310 	[cLEL-9-D10]">
      <seq>taaatctcccagtggaaaaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatgtgtaacattgttgtttgtaactcttttatttttggcatggcatcttagaatcgggaagttttcaatgtgttgtgaacaggaaatggtctctctacctccacgaggtagtggtaaggtctgcgttcatcctccatatactttgcttgtgggacttatgagatttcaatgggtatgttgttgtcgtaaacaagatcctatcgagcaatagaagaccagtataataccggtcttctgcgtgtgtattgtatggcagtttgaatatgttccaagttggaatctgtttgctgataaatggagttcaataatcattgtattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="67009" stop="17591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66709" g_stop="66310" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66309" i_stop="65569" i_length="741">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65568" g_stop="65550" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="419" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E239310" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239310" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66709" e_stop="66310"/>
          <exon e_start="65568" e_stop="65550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGCCTTAGTGTATATGCATTTTATGGCTGAAATATTTACTCTCATGTATCGCAATGATTCAATTGACTTGAGTTTTAAGAACTCCAATAATACGTAAGAACACTGTAGAATAATTTTCTTATCAGTCGAAAAAGCAGAATTAGCGTAAAGCGTATTGTTCTACGCCATTATATAATATAATGTCGTACATTCATAATTTGAATAATAAATTTACAGGATAAGTAGGGTATAGGGAGACGTACTTTGAAAAGGTAGGTAAAAGATGAGATATAATAAGGGCAAAGGTTAAAGATAAAATTACCACTTGTCCCATATAAGTTTATAATTACGAAAATTTTTCAAACTAATATTATAATGTAAACATTGATGTATTATTCTGATGTGTGAGATATATTAATTGTTAAGTAAGATACATTACATTTTATAATGATACACTAAACTGATGTATATTTTATACATGATACACTAATCTGATGCGCGAGTTACATTATACATTAATTTGATATGTTGATATATTAATGTGATGCGTGAAAATGAGGAATTTTGGGGTAAAACTAATAGGGGTTAATGGTAATAAGAAAACTTAAATGTGGGAATTCTGTCATTTTAAGTATAATTATCAAACACAAAATGAGAAGAAACTATTAATGTAATATTGCGATAACATTAAATCAATTGTTATATAAAATAAGTTTTTTTGTTATTACATATTGATGAATTTAAACGGTATCATATTATAGAACTGAAGTAACAATTAAA</genome_strand>
        <mrna_strand>TAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E238936" ref_strand="-" ref_description="SGN-E238936 	[cLEL-9-D10]">
      <seq>aaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatgtgtaacattgttgtttgtaactcttttatttttggcatggcatcttagaatcgggaagttttcaatgtgttgtgaacaggaaatggtctctctacctccaccaggtagtggtaaggtctgcgttcatcctccatatactttgcttgtgggacttatgagatttcaatgggtatgttgttgtcgtaaacaagatcctatcgagcaatagaagaccagtataataccggtcttctgcgtgtgtattgtatggcagtttgaatatgttccaagttggaatctgtttgctgataaatggagttcaataatcattgtattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="66992" stop="17591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66692" g_stop="66310" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66309" i_stop="65569" i_length="741">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65568" g_stop="65550" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="402" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E238936" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238936" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66692" e_stop="66310"/>
          <exon e_start="65568" e_stop="65550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGCCTTAGTGTATATGCATTTTATGGCTGAAATATTTACTCTCATGTATCGCAATGATTCAATTGACTTGAGTTTTAAGAACTCCAATAATACGTAAGAACACTGTAGAATAATTTTCTTATCAGTCGAAAAAGCAGAATTAGCGTAAAGCGTATTGTTCTACGCCATTATATAATATAATGTCGTACATTCATAATTTGAATAATAAATTTACAGGATAAGTAGGGTATAGGGAGACGTACTTTGAAAAGGTAGGTAAAAGATGAGATATAATAAGGGCAAAGGTTAAAGATAAAATTACCACTTGTCCCATATAAGTTTATAATTACGAAAATTTTTCAAACTAATATTATAATGTAAACATTGATGTATTATTCTGATGTGTGAGATATATTAATTGTTAAGTAAGATACATTACATTTTATAATGATACACTAAACTGATGTATATTTTATACATGATACACTAATCTGATGCGCGAGTTACATTATACATTAATTTGATATGTTGATATATTAATGTGATGCGTGAAAATGAGGAATTTTGGGGTAAAACTAATAGGGGTTAATGGTAATAAGAAAACTTAAATGTGGGAATTCTGTCATTTTAAGTATAATTATCAAACACAAAATGAGAAGAAACTATTAATGTAATATTGCGATAACATTAAATCAATTGTTATATAAAATAAGTTTTTTTGTTATTACATATTGATGAATTTAAACGGTATCATATTATAGAACTGAAGTAACAATTAAA</genome_strand>
        <mrna_strand>AAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACCAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E254881" ref_strand="+" ref_description="SGN-E254881 	[cLEG-33-L20]">
      <seq>ttggaagtgctagcagcaagcagtttgttgaccctgcattgatacaccgagtactacctgatgaactgctttttgagatcttgtcaaaaacgaccccatacaccttgggtaaggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcacttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggaatagctgagtggaagatcactaatccagttcatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="73940" stop="70425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73640" g_stop="73564" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73563" i_stop="72038" i_length="1526">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72037" g_stop="71921" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="194" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71920" i_stop="71837" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71836" g_stop="71740" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="291" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71739" i_stop="70801" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70800" g_stop="70725" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="367" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E254881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73640" e_stop="73564"/>
          <exon e_start="72037" e_stop="71921"/>
          <exon e_start="71836" e_stop="71740"/>
          <exon e_start="70800" e_stop="70725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</genome_strand>
        <mrna_strand>TTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 	[cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="81366" stop="80192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81066" g_stop="80492" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81066" e_stop="80492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTCAAATATCTTGAACAGGGTTCTGATGATATTACAAACGATGAAGGTATACCACAACTATTGAATTGATGGAGGAACCGTGAAACTCAATTTTCAAAACTTAGTAGGATGGTGAAGGATGTGCTTTCAATTCAAGGATCATCAGTAGCTTCGGAGGCAACTTTCAGTGCAACAAGATTTCAAATTGGAGACCACAAATATTCGTCAGCAGAAGACAACTTAGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCAGAGAAATCAAGGACTTTCAAAGTTAGATAGTCAATTTGAACTTTCTATAGATTCAGCTATTGAATGTTGTAGTGATGATGGCATCGAACTTCAAGATCGTAAACGAGCGTTACAAAGACCAAAATTTGATTATAATCAATCTATAGCTGAGTTAGAAAAAGAATTTACGGGACTATACAACTATTAGTATTACATCCGAAACTTAGTTGAAACAGAACCCTTTCTAAAAGGTGGCTATGTAAACTATGTACTCTACTAATAGTTATAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E338281" ref_strand="+" ref_description="SGN-E338281 	[cTOE-13-M24]">
      <seq>actgctcttgccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttctagatgtgcgaagttcagattcaagccacttcctgaagaaataatgggcagccgaatattgcatatttgtaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="98090" stop="90077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97790" g_stop="97759" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97758" i_stop="96813" i_length="946">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96812" g_stop="96693" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="152" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96692" i_stop="95986" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95985" g_stop="95916" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="222" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95915" i_stop="95851" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95850" g_stop="95777" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="296" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95776" i_stop="90474" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90473" g_stop="90377" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="393" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E338281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97790" e_stop="97759"/>
          <exon e_start="96812" e_stop="96693"/>
          <exon e_start="95985" e_stop="95916"/>
          <exon e_start="95850" e_stop="95777"/>
          <exon e_start="90473" e_stop="90377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</genome_strand>
        <mrna_strand>ACTGCTCTTGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E336264" ref_strand="+" ref_description="SGN-E336264 	[cTOE-10-J12]">
      <seq>agcactctgacaaaagaaagagaacagctatggcgccagttatgcagagctctcagccatgggtcgagaaatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttttatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="98527" stop="95522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98227" g_stop="98155" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98154" i_stop="98080" i_length="75">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98079" g_stop="98001" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="152" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98000" i_stop="97839" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97838" g_stop="97759" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97758" i_stop="96813" i_length="946">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96812" g_stop="96693" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="352" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96692" i_stop="95986" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95985" g_stop="95916" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="422" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95915" i_stop="95851" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95850" g_stop="95822" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="451" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E336264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98227" e_stop="98155"/>
          <exon e_start="98079" e_stop="98001"/>
          <exon e_start="97838" e_stop="97759"/>
          <exon e_start="96812" e_stop="96693"/>
          <exon e_start="95985" e_stop="95916"/>
          <exon e_start="95850" e_stop="95822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATA</genome_strand>
        <mrna_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E318640" ref_strand="+" ref_description="SGN-E318640 	[cTOB-9-F2]">
      <seq>aatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttatatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="98379" stop="97469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98158" g_stop="98155" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98154" i_stop="98080" i_length="75">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98079" g_stop="98001" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="83" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98000" i_stop="97839" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97838" g_stop="97769" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E318640" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98158" e_stop="98155"/>
          <exon e_start="98079" e_stop="98001"/>
          <exon e_start="97838" e_stop="97769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</genome_strand>
        <mrna_strand>AATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTATATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E267530" ref_strand="+" ref_description="SGN-E267530 	[cLEI-8-K15]">
      <seq>ggagatgcaaatgattctcaaaatgagcagcaatcaacaatgaaaggaaatgatgcgccggtgctggttgttaacagcaaaatagccactacaattgttcacaaccaaaatacgtcaagtgaagaaaatgcactctacacggttaagaatgataaaaaagttaatacactctcaatagaactcttagtagctggcgaaagaggtaaaccttcgaaggatcttggcattttggacgataggccttcaaaacgaataaaagtaaatggttctgtgacactatcagaggacaagggtggggacagtgtacagaagttcactgtttgcacaaatgacaaagaggttatgggaacaggtgccactccttctgaagaaagaaagaaatctggagatagtaagctttctggtggactggacaagaacatgcagaacagaaacgatggtgctgccttggatatcaggcctccaaagaaggcaatcatagactctgttaaagtgaaagaggatagagataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="129931" stop="128819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129631" g_stop="129119" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E267530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129631" e_stop="129119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGA</genome_strand>
        <mrna_strand>GGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E273237" ref_strand="+" ref_description="SGN-E273237 	[cLEM-24-M13]">
      <seq>tgaatcttgacctcgcgatatattttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggataccatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctacctgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtcccttattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140745" stop="143901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141045" g_stop="141180" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="164" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="303" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="382" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="436" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="496" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143557" g_stop="143601" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="541" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E273237" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141045" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATA-CATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTAC-TGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</genome_strand>
        <mrna_strand>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACCATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACCTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E317537" ref_strand="+" ref_description="SGN-E317537 	[cTOB-17-E7]">
      <seq>tatattttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140763" stop="144822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141063" g_stop="141180" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141960" i_length="780">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="195" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="249" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142214" i_stop="143556" i_length="1343">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="345" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="447" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144497" g_stop="144522" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="473" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E317537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141063" e_stop="141180"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAG</genome_strand>
        <mrna_strand>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E542066" ref_strand="+" ref_description="SGN-E542066 	[TUS-63-C22]">
      <seq>attttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140766" stop="145061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141066" g_stop="141180" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="413" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="569" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="671" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="752" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="144728" g_stop="144761" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="786" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E542066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141066" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="144761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCC</genome_strand>
        <mrna_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E220816" ref_strand="+" ref_description="SGN-E220816 	[cLEL-22-O2]">
      <seq>tttttatttacttttctttattcgctctgtcctctctnttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttaccagataattcgtgattctcaaactaataggaatgccaggttacacgaaagagggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140767" stop="142339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141066" g_stop="141180" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="360" r_length="79" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142164" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="365" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E220816" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141066" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTA-CAGATCAATTCGTGATTCTC-AACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCT</genome_strand>
        <mrna_strand>TTTTTATTTACTTTTCTTTATTCGCTCTGTCCTCTCTNTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACCAGAT-AATTCGTGATTCTCAAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E221220" ref_strand="+" ref_description="SGN-E221220 	[cLEL-22-O2]">
      <seq>tttttatttacttttctggattcgctctgtcctctctcttctctgtttctgaagaagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgtaggttgattctttgaattggagagtcaaaaatgagatagatgctattttatccaatcctatcattcctactgagctttacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140767" stop="142291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141066" g_stop="141180" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="141991" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="312" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E221220" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141066" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="141991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGAT</genome_strand>
        <mrna_strand>TTTTTATTTACTTTTCTGGATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGAAGAAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TAGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGCTATTTTATCC...................................................................................................................................................................................................................................................................................................................................AATCCTATCATTCCTACTGAGCTTTACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E298202" ref_strand="+" ref_description="SGN-E298202 	[cLEW-9-M9]">
      <seq>ttttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140767" stop="143752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141067" g_stop="141180" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="142" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="226" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="280" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="358" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="412" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143452" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="458" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E298202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141067" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCG</genome_strand>
        <mrna_strand>TTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E272562" ref_strand="+" ref_description="SGN-E272562 	[cLEM-21-K6]">
      <seq>tttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgattgtcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140772" stop="143982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141072" g_stop="141180" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="138" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="222" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="276" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="354" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="408" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E272562" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141072" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATT-TCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG</genome_strand>
        <mrna_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTGTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E319216" ref_strand="+" ref_description="SGN-E319216 	[cTOB-16-L8]">
      <seq>tttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140772" stop="143891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141072" g_stop="141180" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="137" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="221" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="275" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="353" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="407" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="467" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143557" g_stop="143591" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="502" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E319216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141072" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAG</genome_strand>
        <mrna_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E317572" ref_strand="+" ref_description="SGN-E317572 	[cTOB-8-A11]">
      <seq>ttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140777" stop="143751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141077" g_stop="141180" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="132" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="216" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="270" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="348" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="402" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143451" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="447" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E317572" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141077" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGC</genome_strand>
        <mrna_strand>TTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E319315" ref_strand="+" ref_description="SGN-E319315 	[cTOB-16-L12]">
      <seq>ccatgtgtgtgatttcataagaatccatccgctcactttgaagctttaatggaacaagttgatgaatcactcagaactacttttcagaatgctcatcaacgttgttcacgggatacatatctgcggctcctaatagcaagagagggaaatgtggcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcgggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtcattctgcctgctgcaagtgagaagtatgggaaacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="140823" stop="143889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141123" g_stop="141180" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141259" g_stop="141287" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="87" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141402" g_stop="141485" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="171" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141584" g_stop="141637" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="225" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141961" g_stop="142038" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="303" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="357" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="417" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143557" g_stop="143589" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="450" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E319315" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141123" e_stop="141180"/>
          <exon e_start="141259" e_stop="141287"/>
          <exon e_start="141402" e_stop="141485"/>
          <exon e_start="141584" e_stop="141637"/>
          <exon e_start="141961" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTGTGTGATTTCAGCAAGAATCCAT-CGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATC</genome_strand>
        <mrna_strand>CCATGTGTGTGATTTCA-TAAGAATCCATCCGCTCACTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAGAACTACTTTTCAG..................................................................................................................AATGCTCATCAACGTTGTTCACGGGATACATATCTGCGGCTCCTAATAGCAAGAGAGGGAAATGTGGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCGGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTCATTCTG..........................................................................................CCTGCTGCAAGTGAGAAGTATGGGAAACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E336659" ref_strand="+" ref_description="SGN-E336659 	[cTOE-4-D12]">
      <seq>tacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="141685" stop="145166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141985" g_stop="142038" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="108" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="168" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="264" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="366" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="447" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144728" g_stop="144866" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="586" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E336659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141985" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="144866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGC</genome_strand>
        <mrna_strand>TACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E255251" ref_strand="+" ref_description="SGN-E255251 	[cLEG-31-F10]">
      <seq>caattcgtgattctcaactaataggaatgctaggttacacgaaagagggcctgccagtatgcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtattgggggggcaaacgtatcancaaatctctgaaggttttaaatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcaacctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="141692" stop="145058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141992" g_stop="142038" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="101" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="161" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="263" r_length="102" r_score="0.854"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="365" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="446" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144728" g_stop="144758" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="477" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E255251" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141992" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="144758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTA-T----GGG-AAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTT</genome_strand>
        <mrna_strand>CAATTCGTGATTCTCAACTAATAGGAATGCTAGGTTACACGAAAGAG.........................................................................................................................GGCCTGCCAGTATGCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATTGGGGGGGCAAACGTATCANCAAATCTCTGAAGGTTTTAAATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAACCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E264054" ref_strand="+" ref_description="SGN-E264054 	[cLEG-64-A19]">
      <seq>caattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="141692" stop="143901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141992" g_stop="142038" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="101" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="161" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143557" g_stop="143601" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="206" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E264054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141992" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</genome_strand>
        <mrna_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E264107" ref_strand="+" ref_description="SGN-E264107 	[cLEG-64-G22]">
      <seq>aattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="141693" stop="145139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141993" g_stop="142038" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142160" g_stop="142213" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="100" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="160" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="256" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="358" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="439" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144728" g_stop="144839" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E264107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141993" e_stop="142038"/>
          <exon e_start="142160" e_stop="142213"/>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="144839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACC</genome_strand>
        <mrna_strand>AATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E551765" ref_strand="+" ref_description="SGN-E551765 	[cTSB-1-M15]">
      <seq>aaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagcaggcattgcttcgcagacctgttcggccagttaaacagggctctgtccatgtggattttcctgatgctgtcactgaggggactgagtttgttcagacgttggcatcagaatttcaaaagttcggtaagcaaaatggactttctcaatcactagatgatcttaatatcaatgatcatcaagcatagataataagagtttgggtcattatgcactcgctgacaattctggattctcatgcaagtacagtattaatagctcgagcagtatagcagaggttttctcctaattagacgcctcactcaaattttatatgttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="143102" stop="145485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143407" g_stop="143466" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="69" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143557" g_stop="143652" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="165" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="267" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="348" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144728" g_stop="145185" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="806" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E551765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143407" e_stop="143466"/>
          <exon e_start="143557" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="145185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAG</genome_strand>
        <mrna_strand>GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E235283" ref_strand="+" ref_description="SGN-E235283 	[cLED-11-K19]">
      <seq>cggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagcaggcattgcttcgcagacctgttcggccagttaaacagggctctgtccatgtggattttcctgatgctgtcactgaggggactgagtttgttcagacgttggcatcagaatttcaaaagttcggtaagcaaaatggactttctcaatcactagatgatcttaatatcaatgatcatcaagcatagataataagagtttgggtcattatgcactcgctgacaattctggattctcatgcaagtacagtattaatagctcgagcagtatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="143319" stop="145435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143619" g_stop="143652" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144282" g_stop="144383" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="136" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144497" g_stop="144577" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144728" g_stop="145135" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="625" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E235283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143619" e_stop="143652"/>
          <exon e_start="144282" e_stop="144383"/>
          <exon e_start="144497" e_stop="144577"/>
          <exon e_start="144728" e_stop="145135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAG</genome_strand>
        <mrna_strand>CGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E374098" ref_strand="-" ref_description="SGN-E374098 	[TUS-33-D17]">
      <seq>ttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttttgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaaaatgtttggttgaggctttgtgatgtggattttggggatatagaactgaagatcatattgatcgatttcccttttgcagctccctttaagtaagacggagatagatctgttgaagttaggattggttggtccttaaatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatttcaaatgtattatatatattcataatggtgtggacttgtgctccagctaaatccttgttagaacattgcttttcctagtttttttcaatagcagcattgagctgatggattaacataccattgctgttttgtatttttggtgaagctcatcgtcattttgactgctatctttaagaaatcgatgcattaaagctgagaaaagtattgttaccttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152213" stop="17591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151913" g_stop="151873" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149611" g_stop="148977" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="676" r_length="635" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148976" i_stop="148741" i_length="236">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148740" g_stop="148725" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="692" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E374098" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374098" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="151913" e_stop="151873"/>
          <exon e_start="149611" e_stop="148977"/>
          <exon e_start="148740" e_stop="148725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGATGTCAACTATACACATTTTCAACTATATTCTGATTGATATGTATCCATGAATTGCGTAATTTATGGGCATTTTTTTATTTCCGAGTTACAAAATTCATATCTAAAAAAGAGAATAATATCCATTGCACCTCACATTTGTCATTTTTGTGGCCATTTCTCCCTCAACAGCCATTATTTGTATGGTTTTGCGTTTATTCAGCAAAAACCCCTCTTGGAAATGAACAACTTCACAAAGAGAAAAAATAAAAAAAAA</genome_strand>
        <mrna_strand>TTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTTTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAAATGTTTGGTTGAGGCTTTGTGATGTGGATTTTGGGGATATAGAACTGAAGATCATATTGATCGATTTCCCTTTTGCAGCTCCCTTTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAAATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATTTCAAATGTATTATATATATTCATAATGGTGTGGACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTTTCCTAGTTTTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTTTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTAAA............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E225610" ref_strand="+" ref_description="SGN-E225610 	[cLEL-17-I8]">
      <seq>ttttttttttttttttttttgagctttaatgcatcgatttcttaaagatagcagtcaaaatgacgatgagcttcaccaaaaatacagaacagcaatggtatgttaatccatcagctcaatgctgctattgaaaagaactaggagaagcaatgttctaacaaggatttagctggagcacaagtacacaccattatgaatatatataatacatttgagatacaactaagtgctggctctcctactggatatatcacacatgctaaacctttacctgcgacaagaaagtaaatctaaggaccaaccaatcctaacttcaacagatctatctccgtcttacttagagggagctgcagaagggagatcgatcaatatgatcttcagttctatatccccagaatccacatcacaaagcctcaaccagacatcttgaacaacctcaccattcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="17590" stop="149727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148729" g_stop="148751" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148752" i_stop="149001" i_length="250">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149002" g_stop="149427" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="449" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E225610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148729" e_stop="148751"/>
          <exon e_start="149002" e_stop="149427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTTCTCTTTGTGAAGTTGTTCATTTCCAAGAGGGGTTTTTGCTGAATAAACGCAAAACCATACAAATAATGGCTGTTGAGGGAGAAATGGCCACAAAAATGACAAATGTGAGGTGCAATGGATATTATTCTCTTTTTTAGATATGAATTTTGTAACTCGGAAATAAAAAAATGCCCATAAATTACGCAATTCATGGATACATATCAATCAGAATATAGTTGAAAATGTGTATAGTTGACATCAAGGTAACAATACTTTTCTCAGCTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTGAG..........................................................................................................................................................................................................................................................CTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E210776" ref_strand="+" ref_description="SGN-E210776 	[cLEC-68-I2]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtccttagatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatctcaaatgtattatatatattcataatggtgtgtacttgtgctccagctaatccttgatagacattgcttctcctagttcttttcatagcagcattgagctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152764" stop="148785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152464" g_stop="152431" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152430" i_stop="152168" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152167" g_stop="152052" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149611" g_stop="149085" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="770" r_length="524" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E210776" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152464" e_stop="152431"/>
          <exon e_start="152167" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGA</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCT-AATCCTTGATAG-ACATTGCTTCTCCTAGTTCTTTTC-ATAGCAGCATTGAGCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E374099" ref_strand="+" ref_description="SGN-E374099 	[TUS-33-D17]">
      <seq>agaaaattaatttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcatcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152653" stop="148974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152353" g_stop="152274" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152273" i_stop="152168" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152167" g_stop="152052" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="196" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149611" g_stop="149274" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="630" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E374099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152353" e_stop="152274"/>
          <exon e_start="152167" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTC</genome_strand>
        <mrna_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA..........................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E374606" ref_strand="+" ref_description="SGN-E374606 	[TUS-15-P9]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccttctaagtaagacggagatagatctgttgaagttaggattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152764" stop="148979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152464" g_stop="152431" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152430" i_stop="152168" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152167" g_stop="152052" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149611" g_stop="149279" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="579" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E374606" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152464" e_stop="152431"/>
          <exon e_start="152167" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGT</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCTTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E242901" ref_strand="+" ref_description="SGN-E242901 	[cLED-31-E18]">
      <seq>aaaaaaagggttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152550" stop="149031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152250" g_stop="152052" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="295" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149611" g_stop="149331" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="576" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E242901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152250" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTC</genome_strand>
        <mrna_strand>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E300427" ref_strand="+" ref_description="SGN-E300427 	[cLET-45-I12]">
      <seq>agaaaattaatttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcatcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152653" stop="149038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152353" g_stop="152274" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152273" i_stop="152168" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152167" g_stop="152052" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="196" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149611" g_stop="149338" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="566" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E300427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152353" e_stop="152274"/>
          <exon e_start="152167" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATC</genome_strand>
        <mrna_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA..........................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E204712" ref_strand="+" ref_description="SGN-E204712 	[cLEC-14-P5]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152764" stop="149121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152464" g_stop="152431" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152430" i_stop="152168" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152167" g_stop="152052" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151968" g_stop="151873" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149611" g_stop="149421" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="437" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E204712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152464" e_stop="152431"/>
          <exon e_start="152167" e_stop="152052"/>
          <exon e_start="151968" e_stop="151873"/>
          <exon e_start="149611" e_stop="149421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAA</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E203890" ref_strand="+" ref_description="SGN-E203890 	[cLEC-17-F9]">
      <seq>atttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcagttgagtcattttattgtaccctaaaaaaagggttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattggtgagttttgaaccctctcaagcctcaaattcatttacttgactaatcttgtgtctcatactgttttgaactacacttgcataatcttggattatttcttaaagaatgaaaattgttggcatcatgtgtaaatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="152644" stop="151435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152344" g_stop="152052" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151968" g_stop="151735" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="527" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E203890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152344" e_stop="152052"/>
          <exon e_start="151968" e_stop="151735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</genome_strand>
        <mrna_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E233888" ref_strand="+" ref_description="SGN-E233888 	[cLEL-8-L89]">
      <seq>tttttttttttttttttttggngctaatgttactggttccatacaccacaaaatgcttacaaatctacagttcacaagaatccgcggatcatatgaaggagggaggaactacaacagacgcacttctgttactaatctaaacaaacaaaatatacaaaatgaagacacaagactacaacaaaaaccgagctgcaacacaggatcggttcgtcgggtaagttaatgccaacttactacactagagctgtacaatgcctaagagaactgctattgatgcatatcagttacctctagaccgcagctacacaaactatgggaatgcacattcttgtccttgctccctaccttttaataaacctgtgacctaccattttctatgtggtaaactgtacttcataaacttattaatggtactgttaatggtatcatcttcctaggatgaccggatttggattgatgctacttgctctccaggatgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="+" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="17591" stop="154425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152969" g_stop="152987" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152988" i_stop="153661" i_length="674">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153662" g_stop="154125" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="483" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="+" ref_id="SGN-E233888" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152969" e_stop="152987"/>
          <exon e_start="153662" e_stop="154125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTATATATTAAATATATCCTAAAATGTTAGTTAAAATTTTTATAATTCAACTCTAAAATTGAAAAGTATGACAATAATAGTGAACGAAGGAAGTACCTTTTTAAGCCGTAGATACAATACTTCATGAATAAAATAAATACGCCCATAAAATAAGGAAAAAATGACAGTAAGAGTTAGAATTCATTAAGAAAAACGCAATTTGTATTTTGTTTCAAGTTGGATCAGTCCCAATTTGTAATTAGCGATAATTAGTTTTGTATGTATAAAAGAACTTACTTTAATACATAGATGAACACTGCTTAATTCTCATTCATCTTTTCATGCCAATTAAGGATAAGGTGTTTCTCACGTGTTGTTCAGTTTTTGCGTAAAAATTACTTTTTGATAATTTAATAAAATTCACCAAAGTGATAATTGAAGCAAAAGTGAGATGATTCTTATGTAAAAAGAAGCGATTTTTGTGTAATGAACTCAGCCGGACGATCATCAACTGTTTATCAAAACACACATCTAACCATCAATTTTCTCTTTTCCTACATAATGGTGGAAACACGACTCATAATTGATGCGTGTTTTTGATAAATAGTTGATCATAGTTCAAATAGAAAAAGTGAATATCTAATAGTTCAAGTAGAGAACACCTCATTCACAAATATTGAGAATTAGAAGCAAAAAAGAAGTGAAAAGGGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGNGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGGTACTGTTAATGGTATCATCTTCCTAGGATGACCGGATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E540863" ref_strand="-" ref_description="SGN-E540863 	[TUS-61-F19]">
      <seq>aaagatgaggatgaacttggcacccctcaggattctcgtgatcagacagggagatctctctttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaggcattgtacagctctagtgtagtaagttggcattaacttacccgacgaaccgatcctgtgttgcagctcggtttttgttgtagtcttgtgtcttcattttgtatattttgtttgtttagattagtaacagaagtgcgtctgttgtagttcctccctccttcatatgatccgcggattcttgtgaactgtagatttgtaagcattttgtggtgtatggaaccagtaacattagcacccttttcacttcttttttgcttctaattctcaatatttgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="154840" stop="153320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154540" g_stop="154301" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="154215" g_stop="153623" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="832" r_length="593" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153622" i_stop="153508" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.388" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="153507" g_stop="153496" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="844" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E540863" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540863" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="154540" e_stop="154301"/>
          <exon e_start="154215" e_stop="153623"/>
          <exon e_start="153507" e_stop="153496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGTGAATGAGGTGTTCTCTACTTGAACTATTAGATATTCACTTTTTCTATTTGAACTATGATCAACTATTTATCAAAAACACGCATCAATTATGAGTCGTGTTTCCACCATTATGTAGGAAAAGAGAAAA</genome_strand>
        <mrna_strand>AAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGT-GATCAGACAGGGAGATCTCTCTTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGT...................................................................................................................GAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E554987" ref_strand="+" ref_description="SGN-E554987 	[cTSC-6-A8]">
      <seq>ccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgttccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaggcattgtacagctctagtgtagtaagttggcattaacttacccgacgaaccgatcctgtgttgcagctcggtttttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="156662" stop="153517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156362" g_stop="156320" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="154707" g_stop="154301" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="450" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="154215" g_stop="153817" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="849" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E554987" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156362" e_stop="156320"/>
          <exon e_start="154707" e_stop="154301"/>
          <exon e_start="154215" e_stop="153817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGT</genome_strand>
        <mrna_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTTCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E556559" ref_strand="+" ref_description="SGN-E556559 	[cTSD-3-N5]">
      <seq>ccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgttccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaagcattgtacagctctagtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="156662" stop="153577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156362" g_stop="156320" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="154707" g_stop="154301" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="450" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="154215" g_stop="153877" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="789" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E556559" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156362" e_stop="156320"/>
          <exon e_start="154707" e_stop="154301"/>
          <exon e_start="154215" e_stop="153877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTA</genome_strand>
        <mrna_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTTCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAAGCATTGTACAGCTCTAGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E329452" ref_strand="+" ref_description="SGN-E329452 	[cTOD-11-C6]">
      <seq>aagaatgtcctttggaaaataaagatgaggatgaacttggcagccctcatgattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="154860" stop="153660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154560" g_stop="154301" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="154215" g_stop="153960" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="516" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E329452" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154560" e_stop="154301"/>
          <exon e_start="154215" e_stop="153960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATT</genome_strand>
        <mrna_strand>AAGAATGTCCTTTGGAAAATAAAGATGAGGATGAACTTGGCAGCCCTCATGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E540865" ref_strand="+" ref_description="SGN-E540865 	[TUS-61-F19]">
      <seq>tggaaaaggagtgttgggagcttgttggtggtgtgcagaaacctgtgaagggttcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgtcccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctggcaaatctgatgaagattatccgacgatgagctacttagcacgtggaaaacacgagcagggaagtcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="157595" stop="153884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157295" g_stop="157246" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="157245" i_stop="157137" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157136" g_stop="157099" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="88" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157098" i_stop="156620" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156619" g_stop="156557" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="151" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="156556" i_stop="156475" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="156474" g_stop="156320" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="306" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="154707" g_stop="154301" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="712" r_length="406" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="154215" g_stop="154184" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="744" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E540865" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157295" e_stop="157246"/>
          <exon e_start="157136" e_stop="157099"/>
          <exon e_start="156619" e_stop="156557"/>
          <exon e_start="156474" e_stop="156320"/>
          <exon e_start="154707" e_stop="154301"/>
          <exon e_start="154215" e_stop="154184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGC</genome_strand>
        <mrna_strand>TGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGGCAAATCTGATGAAG-ATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAAACACGAGCAGGGAAGTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E251176" ref_strand="+" ref_description="SGN-E251176 	[cLEG-10-J3]">
      <seq>ggaaaaggagtgttgggatcttgttggtggtgtgcanaaacctgtgaagggtgcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgtcccgtggaaaataaagatgaggatgaacttggcacccctcatgattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="157594" stop="154155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157294" g_stop="157246" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="157245" i_stop="157137" i_length="109">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157136" g_stop="157099" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="87" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157098" i_stop="156620" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156619" g_stop="156557" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="149" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="156556" i_stop="156475" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="156474" g_stop="156320" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="304" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="154707" g_stop="154455" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="557" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E251176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157294" e_stop="157246"/>
          <exon e_start="157136" e_stop="157099"/>
          <exon e_start="156619" e_stop="156557"/>
          <exon e_start="156474" e_stop="156320"/>
          <exon e_start="154707" e_stop="154455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGA</genome_strand>
        <mrna_strand>GGAAAAGGAGTGTTGGGATCTTGTTGGTGGTGTGCANAAACCTGTGAAG.............................................................................................................GGTGCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGG-AAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCATGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-HZ9klD/sgn_ests_tomato" ref_id="SGN-E289984" ref_strand="+" ref_description="SGN-E289984 	[cLET-9-L14]">
      <seq>ggaaaatgagtgttgggagcttgttggtggtgtgcagaaacctgtgaagggttcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DDKvT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0062I24.1" temp_strand="-" temp_description="C11HBa0062I24.1  AC212432.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0062I24 sequenced_by:ivf-caas">
        <position start="157594" stop="154294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157294" g_stop="157246" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="157245" i_stop="157137" i_length="109">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157136" g_stop="157099" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="87" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157098" i_stop="156620" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156619" g_stop="156557" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="156556" i_stop="156475" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="156474" g_stop="156320" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="305" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="154707" g_stop="154594" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.1" gen_strand="-" ref_id="SGN-E289984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157294" e_stop="157246"/>
          <exon e_start="157136" e_stop="157099"/>
          <exon e_start="156619" e_stop="156557"/>
          <exon e_start="156474" e_stop="156320"/>
          <exon e_start="154707" e_stop="154594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTG</genome_strand>
        <mrna_strand>GGAAAATGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>78</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4344" PGL_stop="3910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4344" e_stop="4161"/>
            <exon e_start="3967" e_stop="3910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="4344" e_stop="4161" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4160" i_stop="3968" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3967" e_stop="3910" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4344" stop="4161"/>
              <exon start="3967" stop="3910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTATAGAAAGGTATTAACCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAG : GCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCC</gDNA_template>
            <first_frame> F  V  *  K  G  I  N  Q  S  T  T  F  F  G  S  A  Q  I  S  F  E  E  *  K  K  M  V  M  W  V  F  G  Y  G  S  L  I  W  K  P  G  F  N  Y  D  D  R  L  F  G  F  I  K  G  Y  R  R  V  F  Y  Q   : G  S  T  D  H  R  G  T  P  E  F  P  G  R  T  V  T  L  E   </first_frame>
            <second_frame>  L  Y  R  K  V  L  T  N  P  Q  H  S  L  A  L  L  K  F  H  L  R  N  K  K  K  W  *  C  G  Y  L  D  M  D  L  *  F  G  S  L  G  L  T  T  M  I  V  F  S  V  L  S  K  A  I  V  V  S  F  I  K  :  A  V  L  I  I  E  G  H  Q  N  S  Q  V  E  Q  *  H  W  S  </second_frame>
            <third_frame>   C  I  E  R  Y  *  P  I  H  N  I  L  W  L  C  S  N  F  I  *  G  I  K  K  N  G  D  V  G  I  W  I  W  I  S  N  L  E  A  W  V  *  L  R  *  S  S  F  R  F  Y  Q  R  L  S  S  C  L  L  S  R :   Q  Y  *  S  *  R  D  T  R  I  P  R  *  N  S  N  T  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6637" PGL_stop="17616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6651" e_stop="6727"/>
            <exon e_start="9539" e_stop="9756"/>
            <exon e_start="10791" e_stop="10824"/>
            <exon e_start="12982" e_stop="13118"/>
            <exon e_start="15789" e_stop="15855"/>
            <exon e_start="17517" e_stop="17616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6651" e_stop="6727" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9539" e_stop="9756" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10791" e_stop="10824" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12982" e_stop="13118" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15789" e_stop="15855" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="15856" i_stop="17516" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17517" e_stop="17616" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6651" stop="6727"/>
              <exon start="9539" stop="9756"/>
              <exon start="10791" stop="10824"/>
              <exon start="12982" stop="13118"/>
              <exon start="15789" stop="15855"/>
              <exon start="17517" stop="17616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6651" stop="6727"/>
              <exon start="9539" stop="9756"/>
              <exon start="10791" stop="10824"/>
              <exon start="12982" stop="13118"/>
              <exon start="15789" stop="15851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6656" stop="6727"/>
              <exon start="9539" stop="9756"/>
              <exon start="10791" stop="10824"/>
              <exon start="12982" stop="13118"/>
              <exon start="15789" stop="15855"/>
              <exon start="17517" stop="17574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</gDNA_template>
            <first_frame> V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q </first_frame>
            <second_frame>  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N   </second_frame>
            <third_frame>   Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6652" stop="6727"/>
                    <exon start="9539" stop="9756"/>
                    <exon start="10791" stop="10824"/>
                    <exon start="12982" stop="13118"/>
                    <exon start="15789" stop="15855"/>
                    <exon start="17517" stop="17614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6638" e_stop="6727"/>
            <exon e_start="9539" e_stop="9795"/>
            <exon e_start="10791" e_stop="10824"/>
            <exon e_start="12982" e_stop="13118"/>
            <exon e_start="15789" e_stop="15855"/>
            <exon e_start="17517" e_stop="17616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6638" e_stop="6727" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9539" e_stop="9795" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9796" i_stop="10790" i_length="995"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10791" e_stop="10824" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10825" i_stop="12981" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12982" e_stop="13118" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="13119" i_stop="15788" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15789" e_stop="15855" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="15856" i_stop="17516" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="17517" e_stop="17616" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6638" stop="6727"/>
              <exon start="9539" stop="9795"/>
              <exon start="10791" stop="10824"/>
              <exon start="12982" stop="13118"/>
              <exon start="15789" stop="15855"/>
              <exon start="17517" stop="17616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</gDNA_template>
            <first_frame> G  G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R  L  Y  M  L  K  M  Q  I  D  H  I  C  W :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T  </first_frame>
            <second_frame>  V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E  G  C  T  C  *  R  C  R  S  I  T  F  A   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q </second_frame>
            <third_frame>   W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  V  V  H  A  K  D  A  D  R  S  H  L  L  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6640" stop="6727"/>
                    <exon start="9539" stop="9795"/>
                    <exon start="10791" stop="10824"/>
                    <exon start="12982" stop="13118"/>
                    <exon start="15789" stop="15855"/>
                    <exon start="17517" stop="17614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKVVHAKDADRSHLLAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6637" e_stop="6727"/>
            <exon e_start="9539" e_stop="9756"/>
            <exon e_start="10791" e_stop="10824"/>
            <exon e_start="11091" e_stop="11460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.672" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6637" e_stop="6727" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6728" i_stop="9538" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9539" e_stop="9756" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9757" i_stop="10790" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10791" e_stop="10824" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.672">
            <gDNA_intron_boundary i_start="10825" i_stop="11090" i_length="266"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="11091" e_stop="11460" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6637" stop="6727"/>
              <exon start="9539" stop="9756"/>
              <exon start="10791" stop="10824"/>
              <exon start="11091" stop="11460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : TGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTT</gDNA_template>
            <first_frame> R  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : V  S  L  N  A  R  L  K  H  T  *  T  L  K  F  C  E  A  Q  F  R  R  S  T  L  L  R  W  R  F  C  A  S  T  K  P  L  R  P  T  P  H  H  H  G  S  V  F  K  R  A  N  L  G  N  *  Y  S  W  Q  S  N  I  V  F  V  N  K  T  L  L  M  N  L  L  V  I  G  I  K  K  L  E  N  *  *  S  T  A  N  *  L  F  F  F  K  K  M  Y  M  F  A  S  N  S  *  V  *  F  G  S  C  T  F  C  I  Y  I  L  P  S  S  N   </first_frame>
            <second_frame>  G  G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  C  H  *  M  L  A  *  S  T  L  K  L  *  S  F  V  R  R  N  L  D  V  P  P  C  *  D  G  G  F  V  Q  A  P  S  H  L  D  L  H  L  I  T  T  G  L  S  L  R  G  Q  I  L  A  I  N  I  V  G  K  A  I  *  F  L  L  T  K  R  Y  *  *  T  C  *  *  S  G  S  R  N  *  R  T  N  K  A  L  L  T  N  F  F  F  L  K  K  C  T  C  L  H  P  I  L  K  F  N  L  V  H  V  L  F  A  S  I  F  C  L  V  P  I  </second_frame>
            <third_frame>   V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  C :   V  I  K  C  S  L  E  A  H  L  N  S  E  V  L  *  G  A  I  *  T  F  H  L  A  E  M  A  V  L  C  K  H  Q  A  T  *  T  Y  T  S  S  P  R  V  C  L  *  E  G  K  S  W  Q  L  I  *  L  A  K  Q  Y  S  F  C  *  Q  N  V  I  N  E  L  V  S  D  R  D  Q  E  T  R  E  L  I  K  H  C  *  L  T  F  F  F  *  K  N  V  H  V  C  I  Q  F  L  S  L  I  W  F  M  Y  F  L  H  L  Y  F  A  *  F  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6637" stop="6727"/>
                    <exon start="9539" stop="9756"/>
                    <exon start="10791" stop="10824"/>
                    <exon start="11091" stop="11122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFVSLNARLKHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23142" PGL_stop="22381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23142" e_stop="22851"/>
            <exon e_start="22699" e_stop="22381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="23142" e_stop="22851" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22850" i_stop="22700" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="22699" e_stop="22381" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23142" stop="22851"/>
              <exon start="22699" stop="22473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22617" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTGTTAATGATGATGCCTTGGTACAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACTGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  V  N  D  D  A  L  V  Q  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I   : V  Y  *  G  A  E  C  H  V  L  T  R  G  E  *  R  *  *  I  L  K  D  D  N  I  F  K  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  Q  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  :  Y  I  E  E  R  S  V  T  Y  *  H  E  G  N  K  D  N  E  S  *  K  M  I  I  Y  S  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   *  S  T  C  *  *  *  C  L  G  T  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  N  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  *  *  Y  I  Q  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25758" PGL_stop="26147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25758" e_stop="26147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="25758" e_stop="26147" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25758" stop="26147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGACGACGGATTCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGGCCGTCACAGACCCTTCAAAGAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACTGCGTAATCCCAGGCTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGGCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCAATTTCTTGAGGGTTAAAAGAGATAACCTTGAATCAATT</gDNA_template>
            <first_frame> *  D  D  G  F  H  D  G  P  S  W  A  R  R  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  T  L  Q  R  I  E  S  L  N  F  V  T  E  A  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  R  L  G  R  I  S  V  K  C  F  K  G  R  F  G  L  F  L  L  I  I  I  K  L  V  V  E  Y  *  *  F  N  F  L  R  V  K  R  D  N  L  E  S  I </first_frame>
            <second_frame>  E  T  T  D  S  T  T  D  R  H  G  H  D  G  P  S  R  G  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  T  G  R  H  R  P  F  K  E  L  S  L  *  T  L  *  R  K  Q  Q  D  G  P  S  Q  A  R  R  A  V  T  D  C  V  I  P  G  W  V  G  F  L  L  N  V  L  R  G  V  L  G  Y  S  C  L  *  L  *  S  *  W  L  N  I  N  N  S  I  S  *  G  L  K  E  I  T  L  N  Q   </second_frame>
            <third_frame>   R  R  R  I  P  R  R  T  V  M  G  T  T  D  R  R  G  G  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  A  V  T  D  P  S  K  N  *  V  S  E  L  C  D  G  S  S  R  T  D  R  R  R  H  D  G  P  S  Q  T  A  *  S  Q  A  G  S  D  F  C  *  M  F  *  G  A  F  W  A  I  P  A  Y  N  Y  K  V  S  G  *  I  L  I  I  Q  F  L  E  G  *  K  R  *  P  *  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25878" stop="26102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNGRTDRHRRDGPSQTLQRIESLNFVTEAAGRTVAGTTGRHRLRNPRLGRISVKCFKGRFGLFLLIIIKLVVEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30139" PGL_stop="36812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30139" e_stop="30436"/>
            <exon e_start="35834" e_stop="36316"/>
            <exon e_start="36568" e_stop="36582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30139" e_stop="30436" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.941">
            <gDNA_intron_boundary i_start="30437" i_stop="35833" i_length="5397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35834" e_stop="36316" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36317" i_stop="36567" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="36568" e_stop="36582" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30139" stop="30436"/>
              <exon start="35834" stop="36228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30266" stop="30436"/>
              <exon start="35834" stop="36195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35862" stop="36316"/>
              <exon start="36568" stop="36582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233950" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35953" stop="36316"/>
              <exon start="36568" stop="36582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234372" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG : GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA : GAACTAGAACAAAAA</gDNA_template>
            <first_frame> L  A  S  K  V  G  D  A  V  S  K  A  L  N  S  N  K  V  L  N  V  V  L  M  S  A  F  G  L  L  C  M  R  S  V  Q  Q  Q  K  N  M  E  V  L  E  A  E  K  D  S  L  L  K  S  N  K  A  M  K  K  D  M  W  D  W  K  Q  Q  L  F  A  E  A  E  L  P  N  P  L  I  P  L  S  K  I  K  A  I  Y  G  D  V  Q  T  T  T  S  T  S   : G  G  D  A  H  N  G  D  G  K  S  P  A  G  V  F  V  I  *  K  P  L  L  *  L  V  H  D  E  A  S  C  F  L  A  K  *  Q  A  A  T  Q  I  C  E  I  S  C  F  S  *  *  N  G  K  L  G  K  V  V  *  F  *  V  F  S  W  N  L  V  I  Y  S  C  F  F  P  S  P  L  S  C  S  P  L  G  G  R  D  P  S  L  I  C  G  D  T  A  P  L  I  Y  F  C  C  W  D  Y  A  M  S  *  V  S  L  S  I  N  Q  I  F  M  S  S  C  I  W  M  F  D  *  F  H  F  S  L  G  M  G  V  L  S  K  I  T  M  *  P  A  F  L  S  H  C  E  D  M  I  F  F  I   : R  T  R  T  K  </first_frame>
            <second_frame>  W  Q  A  K  S  E  T  Q  *  A  K  R  *  T  A  T  K  C  *  M  *  C  *  *  V  H  L  D  C  Y  V  *  D  Q  C  S  N  R  R  I  W  K  F  L  K  Q  K  R  T  L  C  S  N  L  I  K  L  *  R  R  I  C  G  I  G  S  S  S  F  L  L  K  L  S  Y  P  I  H  L  F  H  S  L  R  L  K  P  F  M  E  T  F  K  P  P  H  R  L  L  :  V  E  M  L  I  T  E  M  E  N  H  L  Q  E  Y  L  L  S  E  S  H  C  C  S  L  F  M  T  K  Q  V  V  F  W  Q  N  N  K  R  P  L  R  S  V  K  Y  H  A  S  V  S  R  M  G  S  L  G  K  W  C  N  S  E  F  S  L  G  T  *  *  F  T  V  V  F  S  L  L  L  S  H  V  V  R  *  E  V  E  I  Q  V  *  F  V  V  T  L  H  H  L  S  T  F  V  A  G  T  M  P  *  A  E  F  H  Y  L  S  T  K  Y  L  *  V  H  A  F  G  C  L  I  D  S  T  S  V  *  A  W  V  F  S  A  R  *  Q  C  N  Q  L  F  L  V  T  V  K  I  *  Y  F  L  *  :  E  L  E  Q  K </second_frame>
            <third_frame>   G  K  Q  S  R  R  R  S  K  Q  S  A  E  Q  Q  Q  S  V  E  C  S  V  N  E  C  I  W  I  A  M  Y  E  I  S  A  A  T  E  E  Y  G  S  S  *  S  R  K  G  L  F  A  Q  I  *  *  S  Y  E  E  G  Y  V  G  L  E  A  A  A  F  C  *  S  *  V  T  Q  S  T  Y  S  T  L  *  D  *  S  H  L  W  R  R  S  N  H  H  I  D  F  W :   W  R  C  S  *  R  R  W  K  I  T  C  R  S  I  C  Y  L  K  A  I  V  V  A  C  S  *  R  S  K  L  F  S  G  K  I  T  S  G  H  S  D  L  *  N  I  M  L  Q  L  V  E  W  E  A  W  E  S  G  V  I  L  S  F  L  L  E  L  S  D  L  Q  L  F  F  P  F  S  S  L  M  *  S  V  R  R  S  R  S  K  F  N  L  W  *  H  C  T  T  Y  L  L  L  L  L  G  L  C  H  E  L  S  F  T  I  Y  Q  P  N  I  Y  E  F  M  H  L  D  V  *  L  I  P  L  Q  F  R  H  G  C  S  Q  Q  D  N  N  V  T  S  F  S  *  S  L  *  R  Y  D  I  F  Y  K :   N  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="30436"/>
                    <exon start="35834" stop="35889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASKVGDAVSKALNSNKVLNVVLMSAFGLLCMRSVQQQKNMEVLEAEKDSLLKSNKAMKKDMWDWKQQLFAEAELPNPLIPLSKIKAIYGDVQTTTSTSGGDAHNGDGKSPAGVFVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30314" stop="30436"/>
                    <exon start="35834" stop="36040"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICGIGSSSFLLKLSYPIHLFHSLRLKPFMETFKPPHRLLVEMLITEMENHLQEYLLSESHCCSLFMTKQVVFWQNNKRPLRSVKYHASVSRMGSLGKWCNSEFSLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30139" e_stop="30436"/>
            <exon e_start="35834" e_stop="36318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30139" e_stop="30436" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.941">
            <gDNA_intron_boundary i_start="30437" i_stop="35833" i_length="5397"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="35834" e_stop="36318" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30139" stop="30436"/>
              <exon start="35834" stop="36228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30229" stop="30436"/>
              <exon start="35834" stop="36318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30266" stop="30436"/>
              <exon start="35834" stop="36195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG : GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACT</gDNA_template>
            <first_frame> L  A  S  K  V  G  D  A  V  S  K  A  L  N  S  N  K  V  L  N  V  V  L  M  S  A  F  G  L  L  C  M  R  S  V  Q  Q  Q  K  N  M  E  V  L  E  A  E  K  D  S  L  L  K  S  N  K  A  M  K  K  D  M  W  D  W  K  Q  Q  L  F  A  E  A  E  L  P  N  P  L  I  P  L  S  K  I  K  A  I  Y  G  D  V  Q  T  T  T  S  T  S   : G  G  D  A  H  N  G  D  G  K  S  P  A  G  V  F  V  I  *  K  P  L  L  *  L  V  H  D  E  A  S  C  F  L  A  K  *  Q  A  A  T  Q  I  C  E  I  S  C  F  S  *  *  N  G  K  L  G  K  V  V  *  F  *  V  F  S  W  N  L  V  I  Y  S  C  F  F  P  S  P  L  S  C  S  P  L  G  G  R  D  P  S  L  I  C  G  D  T  A  P  L  I  Y  F  C  C  W  D  Y  A  M  S  *  V  S  L  S  I  N  Q  I  F  M  S  S  C  I  W  M  F  D  *  F  H  F  S  L  G  M  G  V  L  S  K  I  T  M  *  P  A  F  L  S  H  C  E  D  M  I  F  F  I  T </first_frame>
            <second_frame>  W  Q  A  K  S  E  T  Q  *  A  K  R  *  T  A  T  K  C  *  M  *  C  *  *  V  H  L  D  C  Y  V  *  D  Q  C  S  N  R  R  I  W  K  F  L  K  Q  K  R  T  L  C  S  N  L  I  K  L  *  R  R  I  C  G  I  G  S  S  S  F  L  L  K  L  S  Y  P  I  H  L  F  H  S  L  R  L  K  P  F  M  E  T  F  K  P  P  H  R  L  L  :  V  E  M  L  I  T  E  M  E  N  H  L  Q  E  Y  L  L  S  E  S  H  C  C  S  L  F  M  T  K  Q  V  V  F  W  Q  N  N  K  R  P  L  R  S  V  K  Y  H  A  S  V  S  R  M  G  S  L  G  K  W  C  N  S  E  F  S  L  G  T  *  *  F  T  V  V  F  S  L  L  L  S  H  V  V  R  *  E  V  E  I  Q  V  *  F  V  V  T  L  H  H  L  S  T  F  V  A  G  T  M  P  *  A  E  F  H  Y  L  S  T  K  Y  L  *  V  H  A  F  G  C  L  I  D  S  T  S  V  *  A  W  V  F  S  A  R  *  Q  C  N  Q  L  F  L  V  T  V  K  I  *  Y  F  L  *   </second_frame>
            <third_frame>   G  K  Q  S  R  R  R  S  K  Q  S  A  E  Q  Q  Q  S  V  E  C  S  V  N  E  C  I  W  I  A  M  Y  E  I  S  A  A  T  E  E  Y  G  S  S  *  S  R  K  G  L  F  A  Q  I  *  *  S  Y  E  E  G  Y  V  G  L  E  A  A  A  F  C  *  S  *  V  T  Q  S  T  Y  S  T  L  *  D  *  S  H  L  W  R  R  S  N  H  H  I  D  F  W :   W  R  C  S  *  R  R  W  K  I  T  C  R  S  I  C  Y  L  K  A  I  V  V  A  C  S  *  R  S  K  L  F  S  G  K  I  T  S  G  H  S  D  L  *  N  I  M  L  Q  L  V  E  W  E  A  W  E  S  G  V  I  L  S  F  L  L  E  L  S  D  L  Q  L  F  F  P  F  S  S  L  M  *  S  V  R  R  S  R  S  K  F  N  L  W  *  H  C  T  T  Y  L  L  L  L  L  G  L  C  H  E  L  S  F  T  I  Y  Q  P  N  I  Y  E  F  M  H  L  D  V  *  L  I  P  L  Q  F  R  H  G  C  S  Q  Q  D  N  N  V  T  S  F  S  *  S  L  *  R  Y  D  I  F  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30139" stop="30436"/>
                    <exon start="35834" stop="35889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASKVGDAVSKALNSNKVLNVVLMSAFGLLCMRSVQQQKNMEVLEAEKDSLLKSNKAMKKDMWDWKQQLFAEAELPNPLIPLSKIKAIYGDVQTTTSTSGGDAHNGDGKSPAGVFVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30314" stop="30436"/>
                    <exon start="35834" stop="36040"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICGIGSSSFLLKLSYPIHLFHSLRLKPFMETFKPPHRLLVEMLITEMENHLQEYLLSESHCCSLFMTKQVVFWQNNKRPLRSVKYHASVSRMGSLGKWCNSEFSLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36436" e_stop="36812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="36436" e_stop="36812" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36436" stop="36812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36436" stop="36709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAATTTGAGTAAATAAAGCACTGATAAGGGGAGAAGTGAGGGGTCGAATAATCTATCTTCTGCAAAATTGATGAAACCTCTTCATCTGTGATTTTAAAGGGGTTATCTTTGGTCTTGTTCTTTCTCATGTATTAGAGGAACAGATTCCATCTTGTTCTCTGGCGTACGAGGAGACTCTCGAGCATGTTGTGATAGGATGTGCCTCACATAACCATAAAATGTACACCCAACAA</gDNA_template>
            <first_frame> T  *  L  Q  Y  L  Q  H  T  S  V  T  I  I  L  *  K  Y  H  Q  I  I  F  S  M  K  *  G  Y  V  N  L  L  *  I  P  I  K  *  H  P  Y  M  Q  E  L  E  Q  K  F  E  *  I  K  H  *  *  G  E  K  *  G  V  E  *  S  I  F  C  K  I  D  E  T  S  S  S  V  I  L  K  G  L  S  L  V  L  F  F  L  M  Y  *  R  N  R  F  H  L  V  L  W  R  T  R  R  L  S  S  M  L  *  *  D  V  P  H  I  T  I  K  C  T  P  N   </first_frame>
            <second_frame>  H  S  Y  N  I  Y  N  I  Q  V  *  L  L  Y  F  K  N  T  I  K  *  S  F  Q  *  N  E  V  M  L  T  C  C  K  Y  L  S  N  D  I  L  I  C  R  N  *  N  K  N  L  S  K  *  S  T  D  K  G  R  S  E  G  S  N  N  L  S  S  A  K  L  M  K  P  L  H  L  *  F  *  R  G  Y  L  W  S  C  S  F  S  C  I  R  G  T  D  S  I  L  F  S  G  V  R  G  D  S  R  A  C  C  D  R  M  C  L  T  *  P  *  N  V  H  P  T  </second_frame>
            <third_frame>   I  A  T  I  F  T  T  Y  K  C  N  Y  Y  T  L  K  I  P  S  N  N  L  F  N  E  M  R  L  C  *  P  V  V  N  T  Y  Q  M  T  S  L  Y  A  G  T  R  T  K  I  *  V  N  K  A  L  I  R  G  E  V  R  G  R  I  I  Y  L  L  Q  N  *  *  N  L  F  I  C  D  F  K  G  V  I  F  G  L  V  L  S  H  V  L  E  E  Q  I  P  S  C  S  L  A  Y  E  E  T  L  E  H  V  V  I  G  C  A  S  H  N  H  K  M  Y  T  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39091" PGL_stop="37067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39091" e_stop="38950"/>
            <exon e_start="37991" e_stop="37742"/>
            <exon e_start="37661" e_stop="37454"/>
            <exon e_start="37270" e_stop="37067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.542" e_score="0.972"/>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="0.986"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="39091" e_stop="38950" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.542">
            <gDNA_intron_boundary i_start="38949" i_stop="37992" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="37991" e_stop="37742" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37741" i_stop="37662" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="37661" e_stop="37454" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="37453" i_stop="37271" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="37270" e_stop="37067" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39091" stop="38950"/>
              <exon start="37991" stop="37742"/>
              <exon start="37661" stop="37454"/>
              <exon start="37270" stop="37067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAGAATGTATTGTGCCAATGGAGTGTTGTTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAG : AAATTGGTGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCGTAAAGTCATTTACTCCTGCTACAACAG : TGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTAGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCTACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGGTACAAATTTGACAG : TATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTGAAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCTTCAGTCGTTCCATCCATGCTTCTTATTTTTCTCTCCGGAGTGCTAGCTTTCTGCCTTAACTTCTCTATCTTCTATGTTATCCACTCCACGACTGCTGT</gDNA_template>
            <first_frame> A  L  Q  A  C  L  *  L  E  K  N  G  G  E  C  I  V  P  M  E  C  C  *  I  H  F  C  Y  S  S  M  V  G  F  Q  C  C  C  Y  Y  H  E  Q  M  D  L  S   : E  I  G  V  *  I  S  F  D  S  I  L  R  A  L  H  M  L  S  Y  W  C  I  P  G  N  *  S  A  E  T  *  T  T  H  R  G  R  T  H  R  S  V  E  K  N  F  S  D  V  I  C  V  L  Y  Q  H  S  L  G  E  C  K  F  A  I  Y  S  C  L  F  Y  A  D  R  K  V  I  Y  S  C  Y  N  S :   D  F  A  V  A  S  L  E  E  E  L  *  M  E  D  L  D  F  L  D  S  H  C  W  R  N  S  S  Y  F  Y  Y  *  A  Q  F  Q  H  F  R  I  L  R  C  F  V  W  L  P  C  Y  F  Y  K  N  Y  S  S  R  V  V  V  A  W  V  Q  I  *  Q  :  Y  K  H  S  I  L  H  G  S  L  C  N  Y  D  T  G  S  A  V  F  T  L  *  R  S  W  G  C  R  M  V  I  H  F  P  F  S  R  S  I  H  A  S  Y  F  S  L  R  S  A  S  F  L  P  *  L  L  Y  L  L  C  Y  P  L  H  D  C  C </first_frame>
            <second_frame>  P  Y  R  R  A  Y  S  *  R  K  M  E  E  N  V  L  C  Q  W  S  V  V  R  S  I  F  A  I  L  Q  W  W  G  F  N  V  A  V  I  I  M  N  K  W  I  F  Q  :  K  L  V  F  K  F  P  L  T  V  S  C  V  H  F  I  C  S  A  I  G  A  Y  L  V  I  K  V  L  K  L  K  P  L  I  V  V  E  P  T  D  Q  W  R  R  I  F  P  M  S  F  V  F  C  I  N  I  V  L  G  N  V  S  L  R  Y  I  P  V  S  F  M  Q  T  V  K  S  F  T  P  A  T  T   : V  I  L  Q  W  L  V  W  R  K  S  F  E  W  R  I  W  T  S  L  I  P  I  V  G  G  I  L  L  T  S  I  T  E  L  S  F  N  T  L  G  F  C  A  A  L  F  G  C  L  A  T  S  T  K  T  I  L  A  E  S  L  L  H  G  Y  K  F  D  S :   I  N  T  V  Y  Y  M  A  P  Y  A  T  M  I  L  A  L  P  S  L  L  F  E  G  A  G  V  V  E  W  L  Y  T  F  P  S  V  V  P  S  M  L  L  I  F  L  S  G  V  L  A  F  C  L  N  F  S  I  F  Y  V  I  H  S  T  T  A   </second_frame>
            <third_frame>   P  T  G  V  P  I  V  R  E  K  W  R  R  M  Y  C  A  N  G  V  L  L  D  P  F  L  L  F  F  N  G  G  V  S  M  L  L  L  L  S  *  T  N  G  S  F  R :   N  W  C  L  N  F  L  *  Q  Y  L  A  C  T  S  Y  A  Q  L  L  V  H  T  W  *  L  K  C  *  N  L  N  H  S  S  W  S  N  P  Q  I  S  G  E  E  F  F  R  C  H  L  C  F  V  S  T  *  S  W  G  M  *  V  C  D  I  F  L  S  L  L  C  R  P  *  S  H  L  L  L  L  Q  Q  :  *  F  C  S  G  *  F  G  G  R  A  L  N  G  G  S  G  L  P  *  F  P  L  L  E  E  F  F  L  L  L  L  L  S  S  V  S  T  L  *  D  F  A  L  L  C  L  V  A  L  L  L  L  Q  K  L  F  *  Q  S  R  C  C  M  G  T  N  L  T   : V  *  T  Q  Y  T  T  W  L  P  M  Q  L  *  Y  W  L  C  R  L  Y  S  L  K  E  L  G  L  *  N  G  Y  T  L  S  L  Q  S  F  H  P  C  F  L  F  F  S  P  E  C  *  L  S  A  L  T  S  L  S  S  M  L  S  T  P  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39066" stop="38950"/>
                    <exon start="37991" stop="37742"/>
                    <exon start="37661" stop="37454"/>
                    <exon start="37270" stop="37069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMEENVLCQWSVVRSIFAILQWWGFNVAVIIMNKWIFQKLVFKFPLTVSCVHFICSAIGAYLVIKVLKLKPLIVVEPTDQWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTVKSFTPATTVILQWLVWRKSFEWRIWTSLIPIVGGILLTSITELSFNTLGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPYATMILALPSLLFEGAGVVEWLYTFPSVVPSMLLIFLSGVLAFCLNFSIFYVIHSTTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43886" PGL_stop="46407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43886" e_stop="44728"/>
            <exon e_start="46111" e_stop="46228"/>
            <exon e_start="46320" e_stop="46407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.995"/>
          <exon-intron don_prob="0.895" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43886" e_stop="44728" e_length="843"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44729" i_stop="46110" i_length="1382"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46111" e_stop="46228" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.895" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46229" i_stop="46319" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46320" e_stop="46407" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43886" stop="44308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43952" stop="44680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43989" stop="44598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44389" stop="44728"/>
              <exon start="46111" stop="46228"/>
              <exon start="46320" stop="46407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG : CTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAA : TTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATA</gDNA_template>
            <first_frame> L  I  T  V  T  P  Y  P  S  P  T  I  F  K  K  T  P  L  L  F  Q  T  P  N  L  P  F  C  S  L  H  L  Q  R  Q  E  F  I  F  F  C  V  F  L  Q  L  L  A  V  E  P  R  I  E  L  K  G  Q  K  G  I  *  E  K  C  Y  L  S  C  S  S  C  *  A  L  V  S  S  I  P  Q  L  Q  N  L  L  L  S  H  V  P  T  L  I  L  V  L  P  F  L  A  T  L  F  I  L  T  L  R  F  L  K  W  L  H  S  F  K  Q  T  Q  Y  L  F  L  L  L  M  L  L  I  S  H  I  Q  M  L  K  T  T  Y  F  Q  L  N  C  S  L  R  F  L  L  L  V  L  V  L  M  G  S  L  S  L  L  L  F  I  T  R  L  G  L  L  I  L  C  L  *  L  L  T  *  Y  M  G  V  L  F  L  L  T  R  S  R  K  E  T  P  M  L  L  V  L  T  L  Q  C  *  M  L  G  L  I  F  G  F  L  F  L  A  L  A  L  M  G  L  T  I  I  F  L  L  F  I  C  H  M  L  L  E  L  L  I  L  L  Q  G  L  L  L  G  T  L  P  L  L  L  T  L  *  M  L  M  L  W  E  V  L  L  L  R  R  V  T  F  F  P  F  L  C  L  :  L  V  R  L  A  S  Q  D  L  P  R  I  M  A  Y  L  L  R  M  G  A  I  L  L  Q  L  A  T  V  C  N  A  V  V  D  Q  G  V  G   : I  C  T  A  C  Q  L  L  *  Q  F  L  A  Q  A  C  S  A  R  T  A  I  S  C  S  E  M  L  P   </first_frame>
            <second_frame>  S  S  L  S  L  R  T  P  P  P  P  F  S  R  K  P  L  Y  S  F  K  P  Q  I  S  H  F  A  L  S  T  C  R  D  K  N  S  F  F  F  V  C  F  C  N  F  L  L  *  N  Q  E  L  S  L  K  G  K  R  V  S  E  K  N  A  T  F  L  V  P  L  V  E  L  *  F  H  R  S  H  N  F  K  I  Y  Y  *  A  M  F  Q  L  *  Y  L  F  F  P  S  W  L  L  S  L  Y  *  P  *  G  F  *  S  G  F  T  L  S  N  R  P  N  I  S  S  Y  Y  *  C  Y  *  Y  L  I  S  R  C  *  K  P  H  T  S  S  *  T  V  P  *  G  S  C  Y  L  F  L  C  *  W  D  L  *  V  C  F  C  S  L  Q  D  *  A  F  *  Y  S  V  F  D  C  *  H  N  I  W  G  S  C  F  C  *  P  D  Q  G  R  K  P  Q  C  C  W  S  *  P  F  S  V  K  C  W  D  *  S  L  D  S  S  S  L  H  L  L  *  W  D  *  Q  *  S  S  C  Y  L  Y  V  I  C  C  *  S  C  *  Y  S  C  R  D  C  C  *  V  L  Y  H  S  Y  *  P  Y  E  C  *  C  F  G  R  S  F  Y  *  G  G  *  H  S  F  H  S  F  V  C :   L  Y  V  *  L  P  K  I  C  L  G  L  W  L  I  C  C  E  W  E  L  F  Y  Y  S  *  P  L  C  A  M  Q  L  W  T  R  G  S  E  :  F  V  L  H  A  S  F  F  S  S  F  L  L  K  H  A  V  Q  E  Q  Q  S  H  A  R  K  C  Y  H  </second_frame>
            <third_frame>   H  H  C  H  S  V  P  L  P  H  H  F  Q  E  N  P  F  T  L  S  N  P  K  S  P  I  L  L  S  P  L  A  E  T  R  I  H  F  F  L  C  V  S  A  T  S  C  C  R  T  K  N  *  A  *  R  A  K  G  Y  L  R  K  M  L  P  F  L  F  L  L  L  S  F  S  F  I  D  P  T  T  S  K  S  T  I  E  P  C  S  N  S  D  T  C  S  S  L  L  G  Y  S  L  Y  T  D  L  K  V  S  E  V  A  S  L  F  Q  T  D  P  I  S  L  L  T  T  N  A  I  D  I  S  Y  P  D  V  E  N  H  I  L  P  A  K  L  F  L  K  V  P  V  T  C  S  C  V  D  G  I  F  K  S  A  F  V  H  Y  K  T  R  P  S  D  T  L  S  L  I  A  D  I  I  Y  G  G  L  V  S  A  D  Q  I  K  E  G  N  P  N  A  V  G  P  D  P  S  V  L  N  V  G  T  N  L  W  I  P  L  P  C  T  C  F  N  G  T  D  N  N  L  P  A  I  Y  M  S  Y  V  V  R  A  V  D  T  L  A  G  I  A  A  R  Y  S  T  T  L  T  D  L  M  N  V  N  A  L  G  G  P  S  I  K  E  G  D  I  L  S  I  P  L  S   : A  C  T  S  S  F  P  R  S  A  S  D  Y  G  L  S  V  A  N  G  S  Y  S  I  T  A  S  H  C  V  Q  C  S  C  G  P  G  G  R  N :   L  Y  C  M  P  A  S  L  A  V  S  C  S  S  M  Q  C  K  N  S  N  L  M  L  G  N  V  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44053" stop="44728"/>
                    <exon start="46111" stop="46228"/>
                    <exon start="46320" stop="46407"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKGYLRKMLPFLFLLLSFSFIDPTTSKSTIEPCSNSDTCSSLLGYSLYTDLKVSEVASLFQTDPISLLTTNAIDISYPDVENHILPAKLFLKVPVTCSCVDGIFKSAFVHYKTRPSDTLSLIADIIYGGLVSADQIKEGNPNAVGPDPSVLNVGTNLWIPLPCTCFNGTDNNLPAIYMSYVVRAVDTLAGIAARYSTTLTDLMNVNALGGPSIKEGDILSIPLSACTSSFPRSASDYGLSVANGSYSITASHCVQCSCGPGGRNLYCMPASLAVSCSSMQCKNSNLMLGNVTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49308" PGL_stop="51942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49308" e_stop="49441"/>
            <exon e_start="49567" e_stop="49723"/>
            <exon e_start="51299" e_stop="51491"/>
            <exon e_start="51879" e_stop="51942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49308" e_stop="49441" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="49442" i_stop="49566" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49567" e_stop="49723" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.970">
            <gDNA_intron_boundary i_start="49724" i_stop="51298" i_length="1575"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="51299" e_stop="51491" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51492" i_stop="51878" i_length="387"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="51879" e_stop="51942" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49308" stop="49441"/>
              <exon start="49567" stop="49723"/>
              <exon start="51299" stop="51491"/>
              <exon start="51879" stop="51942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAG : ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG : GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG : GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCA</gDNA_template>
            <first_frame> K  M  L  I  F  *  A  *  M  D  S  *  V  D  L  K  E  N  *  M  N  L  K  P  S  Y  S  C  C  *  M  T  V  C  L  D  S  W  L  Y  S  V  G  Y  R :   W  T  L  Y  Y  E  H  L  G  D  *  M  L  I  E  M  E  K  R  K  W  L  W  K  R  R  P  S  D  K  S  P  G  E  T  E  S  S  G  S  L  S  S  Y  S  E  R  Y  S  D  E  Q  :  D  A  L  K  E  F  P  D  H  D  K  Q  S  P  E  V  T  S  K  A  A  F  V  D  D  E  S  K  E  S  L  R  C  L  T  E  K  L  S  A  A  L  V  N  V  S  A  K  E  D  L  V  K  Q  H  A  K  V  A  E  E  A  I  A   : G  W  E  K  A  E  N  E  V  A  V  L  K  Q  Q  L  D  A  A  V  Q   </first_frame>
            <second_frame>  K  C  L  F  F  E  L  R  W  I  V  E  W  I  *  R  K  T  E  *  T  *  S  Q  V  I  V  V  V  K  *  Q  C  V  W  T  A  G  C  I  L  *  G  I   : D  G  H  C  T  M  S  I  *  E  I  K  C  L  L  R  W  K  R  G  N  G  C  G  K  G  D  L  P  I  R  A  L  V  K  R  R  V  L  V  L  Y  L  H  I  R  R  D  T  P  M  S  R :   M  H  *  K  N  F  L  T  M  T  N  S  H  Q  R  L  P  Q  K  L  H  S  L  M  M  N  P  R  K  A  *  D  A  *  Q  R  N  Y  Q  L  L  L  L  M  L  A  P  K  K  T  *  L  S  S  M  L  K  L  P  K  K  L  S  Q  :  V  G  K  R  Q  K  M  K  L  Q  F  *  S  S  N  *  M  R  L  C  S  </second_frame>
            <third_frame>   N  A  Y  F  L  S  L  D  G  *  L  S  G  F  E  G  K  L  N  E  L  E  A  K  L  *  L  L  L  N  D  S  V  F  G  Q  L  V  V  F  C  R  V  *  :  M  D  I  V  L  *  A  F  R  R  L  N  A  Y  *  D  G  K  E  E  M  V  V  E  K  E  T  F  R  *  E  P  W  *  N  G  E  F  W  F  F  I  F  I  F  G  E  I  L  R  *  A   : G  C  T  K  R  I  S  *  P  *  Q  T  V  T  R  G  Y  L  K  S  C  I  R  *  *  *  I  Q  G  K  L  E  M  L  D  R  E  I  I  S  C  S  C  *  C  *  R  Q  R  R  L  S  *  A  A  C  *  S  C  R  R  S  Y  R  R :   L  G  K  G  R  K  *  S  C  S  S  K  A  A  T  R  C  G  C  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49601" stop="49723"/>
                    <exon start="51299" stop="51491"/>
                    <exon start="51879" stop="51940"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLIEMEKRKWLWKRRPSDKSPGETESSGSLSSYSERYSDEQDALKEFPDHDKQSPEVTSKAAFVDDESKESLRCLTEKLSAALVNVSAKEDLVKQHAKVAEEAIAGWEKAENEVAVLKQQLDAAVQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52631" PGL_stop="53375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52631" e_stop="53173"/>
            <exon e_start="53287" e_stop="53375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52631" e_stop="53173" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.948">
            <gDNA_intron_boundary i_start="53174" i_stop="53286" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53287" e_stop="53375" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52631" stop="53173"/>
              <exon start="53287" stop="53375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52632" stop="53173"/>
              <exon start="53287" stop="53374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG : GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCT</gDNA_template>
            <first_frame> I  D  M  M  D  D  F  L  E  M  E  Q  L  A  A  L  S  E  T  A  N  K  T  P  S  V  T  S  D  A  V  P  H  D  S  P  N  I  E  N  P  L  A  A  E  Y  N  S  I  S  Q  R  V  V  E  L  E  Q  K  L  E  K  I  E  A  E  K  A  E  L  E  N  A  F  N  E  S  Q  D  A  L  K  V  S  S  L  Q  L  K  E  T  Q  T  R  L  E  G  L  Q  K  E  L  D  V  V  N  E  S  K  E  L  L  E  F  Q  L  Y  G  M  E  V  E  A  R  T  M  S  V  N  I  D  S  L  K  T  E  V  E  K  E  K  S  L  S  S  E  M  E  A  K  C  H  E  L  E  N  D  L  R  K  K  S  Q  E  A  E  A  Q  Q  T  S  G  S  N  S  E  L  K  I  K  Q  :  E  D  L  A  V  A  A  D  K  L  A  E  C  Q  K  T  I  A  S  L  G  K  Q  L  Q  S  L  A  T   </first_frame>
            <second_frame>  S  I  *  W  M  I  S  W  R  W  S  N  L  L  H  Y  L  K  L  Q  T  R  H  L  Q  *  L  L  M  L  F  L  M  I  L  P  I  L  R  T  L  W  Q  Q  N  T  I  P  F  H  K  G  W  L  N  *  N  K  S  W  R  R  L  K  Q  R  K  L  N  W  R  M  L  S  T  R  V  K  M  P  L  K  C  P  L  C  S  L  R  K  L  K  P  G  W  K  G  C  R  R  S  *  M  W  *  M  S  Q  K  S  C  S  S  F  N  S  M  A  W  R  *  K  H  G  Q  C  L  *  I  L  I  L  *  R  R  K  L  K  K  K  N  L  C  H  Q  K  W  K  L  N  V  M  N  W  K  T  T  L  E  K  N  P  R  K  L  K  L  S  K  L  L  V  Q  I  V  N  *  K  *  N  R :   R  I  *  P  W  L  L  T  S  L  Q  N  A  R  K  Q  L  H  P  L  G  N  S  Y  N  P  *  L  L  </second_frame>
            <third_frame>   R  Y  D  G  *  F  L  G  D  G  A  T  C  C  I  I  *  N  C  K  Q  D  T  F  S  N  F  *  C  C  S  S  *  F  S  Q  Y  *  E  P  F  G  S  R  I  Q  F  H  F  T  K  G  G  *  I  R  T  K  A  G  E  D  *  S  R  E  S  *  T  G  E  C  F  Q  R  E  S  R  C  P  *  S  V  L  F  A  A  *  G  N  S  N  Q  V  G  R  A  A  E  G  A  R  C  G  K  *  V  K  R  V  A  R  V  S  T  L  W  H  G  G  R  S  T  D  N  V  C  K  Y  *  F  F  E  D  G  S  *  K  R  K  I  F  V  I  R  N  G  S  *  M  S  *  I  G  K  R  P  *  K  K  I  P  G  S  *  S  S  A  N  F  W  F  K  *  *  I  E  N  K  T   : G  G  F  S  R  G  C  *  Q  A  C  R  M  P  E  N  N  C  I  P  W  E  T  A  T  I  P  S  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52631" stop="53173"/>
                    <exon start="53287" stop="53373"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMMDDFLEMEQLAALSETANKTPSVTSDAVPHDSPNIENPLAAEYNSISQRVVELEQKLEKIEAEKAELENAFNESQDALKVSSLQLKETQTRLEGLQKELDVVNESKELLEFQLYGMEVEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELENDLRKKSQEAEAQQTSGSNSELKIKQEDLAVAADKLAECQKTIASLGKQLQSLAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="53520" PGL_stop="53897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53520" e_stop="53897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53520" e_stop="53897" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53520" stop="53897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236803" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53598" stop="53897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236937" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</gDNA_template>
            <first_frame> E  S  F  Y  K  R  K  *  R  G  I  S  S  I  F  I  F  I  I  Y  F  I  H  Y  S  G  *  H  W  Q  K  Q  K  W  L  W  E  V  V  F  S  E  *  E  W  S  S  N  S  K  S  Y  R  G  *  I  N  R  G  R  M  L  R  R  L  E  H  N  L  *  K  V  Y  Q  L  H  G  *  S  N  S  V  *  *  A  N  C  L  L  Q  *  L  *  *  I  S  *  E  A  S  N  S  N  R  H  L  E  F  T  L  L  W  L  I  S  L  F  L  F  N  P  F  Q  Y  I  F </first_frame>
            <second_frame>  S  H  S  T  N  E  N  E  G  E  S  P  A  S  S  S  S  S  S  T  S  S  T  T  Q  A  S  T  G  K  S  K  N  G  F  G  K  L  F  S  R  S  K  S  G  V  P  T  L  K  V  I  E  D  K  *  I  E  E  E  C  *  E  G  W  N  I  I  C  K  R  F  I  S  Y  M  A  D  Q  I  L  F  D  K  Q  T  V  C  F  N  S  Y  D  E  Y  L  E  K  L  Q  I  A  I  D  T  L  N  L  H  C  F  G  *  S  P  S  F  Y  L  I  H  F  S  I  F   </second_frame>
            <third_frame>   V  I  L  Q  T  K  M  K  G  N  L  Q  H  L  H  L  H  H  L  L  H  P  L  L  R  L  A  L  A  K  A  K  M  A  L  G  S  C  F  L  G  V  R  V  E  F  Q  L  *  K  L  S  R  I  N  K  *  R  K  N  V  E  K  V  G  T  *  F  V  K  G  L  S  V  T  W  L  I  K  F  C  L  I  S  K  L  F  A  S  I  V  M  M  N  I  L  R  S  F  K  *  Q  *  T  P  *  I  Y  T  A  L  A  N  L  P  L  F  I  *  S  I  S  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="55237" PGL_stop="58316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55237" e_stop="55286"/>
            <exon e_start="55905" e_stop="56141"/>
            <exon e_start="56375" e_stop="56479"/>
            <exon e_start="56666" e_stop="56941"/>
            <exon e_start="57145" e_stop="57292"/>
            <exon e_start="57423" e_stop="57607"/>
            <exon e_start="57700" e_stop="57812"/>
            <exon e_start="58046" e_stop="58316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.927" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55237" e_stop="55286" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.947">
            <gDNA_intron_boundary i_start="55287" i_stop="55904" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55905" e_stop="56141" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.883">
            <gDNA_intron_boundary i_start="56142" i_stop="56374" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56375" e_stop="56479" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56480" i_stop="56665" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56666" e_stop="56941" e_length="276"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56942" i_stop="57144" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57145" e_stop="57292" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="57293" i_stop="57422" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57423" e_stop="57607" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.857">
            <gDNA_intron_boundary i_start="57608" i_stop="57699" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57700" e_stop="57812" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.559" acc_prob="0.927">
            <gDNA_intron_boundary i_start="57813" i_stop="58045" i_length="233"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="58046" e_stop="58316" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55237" stop="55286"/>
              <exon start="55905" stop="56141"/>
              <exon start="56375" stop="56479"/>
              <exon start="56666" stop="56941"/>
              <exon start="57145" stop="57197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55969" stop="56141"/>
              <exon start="56375" stop="56479"/>
              <exon start="56666" stop="56941"/>
              <exon start="57145" stop="57157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56141"/>
              <exon start="56375" stop="56479"/>
              <exon start="56666" stop="56851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56730" stop="56941"/>
              <exon start="57145" stop="57292"/>
              <exon start="57423" stop="57607"/>
              <exon start="57700" stop="57790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56842" stop="56941"/>
              <exon start="57145" stop="57292"/>
              <exon start="57423" stop="57607"/>
              <exon start="57700" stop="57737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57454" stop="57607"/>
              <exon start="57700" stop="57812"/>
              <exon start="58046" stop="58316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57454" stop="57607"/>
              <exon start="57700" stop="57812"/>
              <exon start="58046" stop="58316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG : TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG : GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG : GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG : ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG : CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</gDNA_template>
            <first_frame> F  H  F  L  S  L  C  A  A  L  T  S  L  V  L  E  S :   L  S  K  G  A  L  E  Y  L  L  C  M  G  R  R  V  G  F  Q  I  R  K  V  P  G  *  H  S  L  M  W  K  I  P  G  L  K  F  H  K  V  K  A  S  S  W  M  Q  I  K  L  *  K  L  L  D  M  I  Y  N  T  V  I  G  E  L  G  K  M  Y  L  L  *  C  C  Y  T  K  R :   L  W  K  Y  *  T  L  W  H  A  I  I  N  L  L  E  P  *  R  R  N  L  Q  N  C  K  K  N  F  L  R  L  T  T  R :   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R :   *  S  W  N  F  Q  W  N  M  D  Y  F  *  T  I  F  *  I  L  H  T  H  L  S  H  I  H  Q  L  L  L  K  D  G  V  Y  Q   : A  W  *  S  S  *  L  L  H  L  V  C  K  D  I  G  I  H  I  Q  *  I  W  N  L  D  H  L  V  W  F  Y  P  P  L  A  S  Q  S  Q  A  N  W  K  D  R  V  P  S  S  V  L  R  T  F  I  N  C  M  F  A  Y  L  H  H  D  R  K  H  G  Y  Y  I  E  C  H  W  I  L  L  P  C  *  N  T  S  P  S  C  N   </first_frame>
            <second_frame>  F  T  S  F  L  F  V  P  L  *  Q  V  L  Y  *  K   : V  C  Q  R  E  L  W  S  I  C  C  V  W  G  G  G  W  D  S  R  *  E  K  F  L  V  D  T  L  *  C  G  R  S  Q  D  *  S  S  T  K  *  R  Q  V  L  G  C  K  S  S  F  R  S  C  *  I  *  S  T  I  L  *  L  E  S  *  A  R  C  T  Y  Y  N  A  A  T  R  K   : G  C  G  S  I  K  P  S  G  T  R  L  *  I  Y  W  N  H  E  E  G  T  C  R  I  A  R  R  T  F  S  G  S  Q  P   : G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *   : D  S  H  G  T  S  S  G  T  W  T  T  F  R  Q  S  F  R  S  C  T  R  T  F  H  T  Y  I  N  F  C  *  R  M  E  C  T  K  :  L  G  K  V  L  D  S  C  I  W  S  A  R  I  L  G  S  I  S  N  R  Y  G  I  *  T  T  L  Y  G  F  I  H  H  W  H  L  K  A  R  Q  I  G  R  T  E  Y  Q  A  V  F  Y  A  P  S  S  T  A  C  L  L  T  C  I  T  T  E  N  T  V  I  I  *  N  V  T  G  F  C  S  P  A  E  T  H  P  L  H  A  I  </second_frame>
            <third_frame>   S  L  P  F  S  L  C  R  S  N  K  S  C  T  R  K  :  F  V  K  G  S  F  G  V  F  A  V  Y  G  E  E  G  G  I  P  D  K  K  S  S  W  L  T  L  F  N  V  E  D  P  R  T  K  V  P  Q  S  K  G  K  F  L  D  A  N  Q  A  L  E  V  A  R  Y  D  L  Q  Y  C  D  W  R  A  R  Q  D  V  L  T  I  M  L  L  H  E  K  :  V  V  E  V  L  N  P  L  A  R  D  Y  K  S  I  G  T  M  K  K  E  L  A  E  L  Q  E  E  L  S  Q  A  H  N  Q  :  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  :  I  V  M  E  L  P  V  E  H  G  L  L  L  D  N  L  L  D  L  A  H  A  P  F  T  H  T  S  T  F  A  K  G  W  S  V  P  S :   L  V  K  F  L  T  P  A  S  G  L  Q  G  Y  W  D  P  Y  P  I  D  M  E  F  R  P  P  C  M  V  L  S  T  I  G  I  S  K  P  G  K  L  E  G  Q  S  T  K  Q  C  S  T  H  L  H  Q  L  H  V  C  L  P  A  S  R  Q  K  T  R  L  L  Y  R  M  S  L  D  F  A  P  L  L  K  H  I  P  F  M  Q  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55239" stop="55286"/>
                    <exon start="55905" stop="56141"/>
                    <exon start="56375" stop="56479"/>
                    <exon start="56666" stop="56941"/>
                    <exon start="57145" stop="57292"/>
                    <exon start="57423" stop="57607"/>
                    <exon start="57700" stop="57812"/>
                    <exon start="58046" stop="58316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1383</number_coding_nucleotides>
                  <number_encoded_amino_acids>461</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPFSLCRSNKSCTRKFVKGSFGVFAVYGEEGGIPDKKSSWLTLFNVEDPRTKVPQSKGKFLDANQALEVARYDLQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELSQAHNQVHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPASRQKTRLLYRMSLDFAPLLKHIPFMQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="59103" PGL_stop="60479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59103" e_stop="59128"/>
            <exon e_start="59265" e_stop="59271"/>
            <exon e_start="59901" e_stop="60479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.562" e_score="0.615"/>
          <exon-intron don_prob="0.659" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.615">
            <gDNA_exon_boundary e_start="59103" e_stop="59128" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.562">
            <gDNA_intron_boundary i_start="59129" i_stop="59264" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="59265" e_stop="59271" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59272" i_stop="59900" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="59901" e_stop="60479" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59103" stop="59128"/>
              <exon start="59265" stop="59271"/>
              <exon start="59901" stop="60479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGCAGTTTTCCATATTTTTTCTT : GTTCTTT : GTGCTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGTGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGTGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAGAAGTTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGTAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGTGCTTCCAGAAATCCTCTTGTTTTATGGTTCCATACAAGTAACTAAGAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</gDNA_template>
            <first_frame> Y  C  S  F  P  Y  F  F  L :   F  F  :  V  L  A  N  R  T  L  T  I  Y  I  N  L  Y  Q  I  I  H  L  I  S  S  T  K  F  T  *  D  *  H  I  D  T  T  W  L  S  *  K  A  T  A  *  *  L  I  D  R  V  I  P  Y  T  T  V  A  K  T  S  S  C  *  A  G  F  Q  T  V  S  T  S  *  N  I  S  S  I  R  S  L  S  A  C  L  K  K  L  L  I  S  S  L  T  S  *  I  L  P  K  S  N  K  Y  I  K  Q  P  F  F  N  L  F  S  W  *  S  Q  A  S  C  S  L  S  R  T  L  P  E  L  M  S  S  R  R  L  S  S  Q  A  F  F  K  S  T  I  S  Y  L  F  A  A  P  S  N  A  N  R  C  F  Q  K  S  S  C  F  M  V  P  Y  K  *  L  R  S  A  V  H  D  S  V  D  M  S  S  M  S  I  I  E  D  S  F  S </first_frame>
            <second_frame>  T  A  V  F  H  I  F  S   : C  S  L :   C  L  Q  T  E  H  *  P  F  I  *  I  Y  T  R  *  Y  T  *  *  V  Q  Q  N  L  H  R  I  S  I  *  I  Q  H  G  F  L  R  K  L  Q  L  S  N  *  *  I  E  L  S  H  I  Q  L  W  Q  K  P  H  H  V  R  Q  A  S  K  L  *  A  L  L  E  T  S  L  A  S  D  L  Y  L  P  V  *  R  S  C  *  F  P  P  *  H  H  K  S  C  Q  N  R  T  N  T  S  S  N  L  F  S  I  Y  L  A  G  K  A  R  P  L  A  V  F  R  G  H  Y  P  S  *  C  L  L  G  D  F  P  H  K  H  S  S  N  L  Q  Y  H  T  C  L  P  H  P  V  M  P  I  G  A  S  R  N  P  L  V  L  W  F  H  T  S  N  *  E  A  L  C  M  I  L  L  T  C  L  L  C  R  L  *  R  T  L  S   </second_frame>
            <third_frame>   L  Q  F  S  I  F  F  L  :  V  L   : C  A  C  K  Q  N  I  N  H  L  Y  K  F  I  P  D  N  T  L  N  K  F  N  K  I  Y  I  G  L  A  Y  R  Y  N  M  A  F  L  E  S  Y  S  L  V  I  N  R  *  S  Y  P  I  Y  N  C  G  K  N  L  I  M  L  G  R  L  P  N  C  E  H  F  L  K  H  L  *  H  Q  I  S  I  C  L  S  E  E  V  V  N  F  L  P  N  I  I  N  L  A  K  I  E  Q  I  H  Q  A  T  F  F  Q  F  I  *  L  V  K  P  G  L  L  Q  S  F  E  D  I  T  R  V  D  V  F  *  E  T  F  L  T  S  I  L  Q  I  Y  N  I  I  L  V  C  R  T  Q  *  C  Q  S  V  L  P  E  I  L  L  F  Y  G  S  I  Q  V  T  K  K  R  C  A  *  F  C  *  H  V  F  Y  V  D  Y  R  G  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="62872" PGL_stop="60313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62872" e_stop="62764"/>
            <exon e_start="62683" e_stop="62532"/>
            <exon e_start="61126" e_stop="61011"/>
            <exon e_start="60688" e_stop="60313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62872" e_stop="62764" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.643">
            <gDNA_intron_boundary i_start="62763" i_stop="62684" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62683" e_stop="62532" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="62531" i_stop="61127" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61126" e_stop="61011" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61010" i_stop="60689" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="60688" e_stop="60313" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62872" stop="62764"/>
              <exon start="62683" stop="62532"/>
              <exon start="61126" stop="61011"/>
              <exon start="60688" stop="60313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62871" stop="62764"/>
              <exon start="62683" stop="62532"/>
              <exon start="61126" stop="61011"/>
              <exon start="60688" stop="60482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62865" stop="62764"/>
              <exon start="62683" stop="62532"/>
              <exon start="61126" stop="61011"/>
              <exon start="60688" stop="60421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG : GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG : TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT : GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTT</gDNA_template>
            <first_frame> Q  T  A  R  *  R  L  Y  Q  G  *  L  N  G  G  S  T  I  S  Q  H  L  L  T  K  D  L  T  L  L  K  L  V  Y  G  T   : G  I  C  Q  L  R  R  I  G  I  C  I  F  D  C  F  L  N  L  L  G  F  R  K  S  S  F  L  L  L  L  L  A  L  C  F  V  L  L  Q  L  E  P  I  G  D  L  I  Y  L  L  :  Y  M  R  G  C  F  E  Q  V  M  T  L  C  G  L  L  I  L  V  Y  K  V  D  L  S  L  M  L  S  S  L  T  *  R  S  T  P  Q  M :   V  E  K  E  N  L  Y  G  P  M  T  *  F  C  N  L  *  L  P  K  V  L  S  D  A  S  L  A  C  L  M  S  P  S  I  L  M  L  P  L  I  R  L  M  D  Q  C  K  L  T  E  R  Y  C  L  L  L  L  L  Y  S  T  A  C  S  F  T  I  S  G  R  K  S  P  L  *  S  T  *  K  T  C  Q  Q  N  H  A  Q  R  F  L  V  T  C  M  E  P  *  N  K  R  I  S  G  S  T  D  W  H  Y  W  V  R  Q  T  S  M  I  L  *  I  *  R  M  L </first_frame>
            <second_frame>  R  Q  Q  G  R  D  S  I  K  V  S  S  M  E  D  R  Q  F  H  S  I  Y  L  Q  K  I  *  P  F  *  N  W  Y  M  E  L  :  A  S  V  N  *  E  E  S  V  F  V  Y  S  I  V  S  *  T  F  S  A  F  E  R  A  A  S  S  S  F  C  S  L  Y  A  S  C  Y  Y  N  W  N  Q  S  E  T  S  Y  I  S  C :   I  *  E  A  A  S  N  K  *  *  L  C  V  A  Y  *  F  L  F  T  R  S  I  C  H  *  C  *  V  P  *  P  E  D  L  H  P  K   : W  W  R  R  K  I  Y  M  A  Q  *  H  D  F  A  I  F  S  Y  P  K  Y  S  P  M  P  L  S  H  A  *  *  V  H  P  Y  *  C  Y  H  *  Y  G  *  W  I  S  A  S  S  Q  S  D  T  V  C  Y  F  S  C  I  P  Q  H  V  P  S  R  S  Q  G  E  R  V  L  Y  N  R  H  R  R  H  V  N  R  I  M  H  S  A  S  *  L  L  V  W  N  H  K  T  R  G  F  L  E  A  P  I  G  I  T  G  C  G  K  Q  V  *  Y  C  R  F  E  E  C   </second_frame>
            <third_frame>   D  S  K  V  E  T  L  S  R  L  A  Q  W  R  I  D  N  F  T  A  S  T  Y  K  R  S  D  P  F  K  I  G  I  W  N  W :   H  L  S  I  E  K  N  R  Y  L  Y  I  R  L  F  P  E  P  S  R  L  S  K  E  Q  L  P  P  P  F  A  R  F  M  L  R  V  T  T  T  G  T  N  R  R  P  H  I  S  P   : V  Y  E  R  L  L  R  T  S  D  D  F  V  W  P  I  D  S  C  L  Q  G  R  F  V  I  D  V  E  F  L  D  L  K  I  Y  T  P  N  :  G  G  E  G  K  S  I  W  P  N  D  M  I  L  Q  S  L  A  T  Q  S  T  L  R  C  L  S  R  M  L  D  E  S  I  H  T  D  V  T  I  N  T  A  D  G  S  V  Q  A  H  R  A  I  L  S  A  T  S  P  V  F  H  S  M  F  L  H  D  L  R  E  K  E  S  S  I  I  D  I  E  D  M  S  T  E  S  C  T  A  L  L  S  Y  L  Y  G  T  I  K  Q  E  D  F  W  K  H  R  L  A  L  L  G  A  A  N  K  Y  D  I  V  D  L  K  N  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62870" stop="62764"/>
                    <exon start="62683" stop="62532"/>
                    <exon start="61126" stop="61011"/>
                    <exon start="60688" stop="60314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKVETLSRLAQWRIDNFTASTYKRSDPFKIGIWNWHLSIEKNRYLYIRLFPEPSRLSKEQLPPPFARFMLRVTTTGTNRRPHISPVYERLLRTSDDFVWPIDSCLQGRFVIDVEFLDLKIYTPNGGEGKSIWPNDMILQSLATQSTLRCLSRMLDESIHTDVTINTADGSVQAHRAILSATSPVFHSMFLHDLREKESSIIDIEDMSTESCTALLSYLYGTIKQEDFWKHRLALLGAANKYDIVDLKNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="66709" PGL_stop="65550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66709" e_stop="66310"/>
            <exon e_start="65568" e_stop="65550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66709" e_stop="66310" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="66309" i_stop="65569" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="0.579">
            <gDNA_exon_boundary e_start="65568" e_stop="65550" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66709" stop="66310"/>
              <exon start="65568" stop="65550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239310" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66692" stop="66310"/>
              <exon start="65568" stop="65550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238936" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT : AACTGAAGTAACAATTAAA</gDNA_template>
            <first_frame> *  I  S  Q  W  K  K  W  I  I  M  F  L  V  K  N  W  I  K  Q  T  I  H  W  L  *  M  C  N  I  V  V  C  N  S  F  I  F  G  M  A  S  *  N  R  E  V  F  N  V  L  *  T  G  N  G  L  S  T  S  T  R  *  W  *  G  L  R  S  S  S  I  Y  F  A  C  G  T  Y  E  I  S  M  G  M  L  L  S  *  T  R  S  Y  R  A  I  E  D  Q  Y  N  T  G  L  L  R  V  Y  C  M  A  V  *  I  C  S  K  L  E  S  V  C  *  *  M  E  F  N  N  H  C  I  I   : *  L  K  *  Q  L   </first_frame>
            <second_frame>  K  S  P  S  G  K  N  G  L  L  C  S  W  L  R  T  G  S  N  R  Q  S  I  G  C  K  C  V  T  L  L  F  V  T  L  L  F  L  A  W  H  L  R  I  G  K  F  S  M  C  C  E  Q  E  M  V  S  L  P  P  R  G  S  G  K  V  C  V  H  P  P  Y  T  L  L  V  G  L  M  R  F  Q  W  V  C  C  C  R  K  Q  D  P  I  E  Q  *  K  T  S  I  I  P  V  F  C  V  C  I  V  W  Q  F  E  Y  V  P  S  W  N  L  F  A  D  K  W  S  S  I  I  I  V  L  F  :  N  *  S  N  N  *  </second_frame>
            <third_frame>   N  L  P  V  E  K  M  D  Y  Y  V  P  G  *  E  L  D  Q  T  D  N  P  L  V  V  N  V  *  H  C  C  L  *  L  F  Y  F  W  H  G  I  L  E  S  G  S  F  Q  C  V  V  N  R  K  W  S  L  Y  L  H  E  V  V  V  R  S  A  F  I  L  H  I  L  C  L  W  D  L  *  D  F  N  G  Y  V  V  V  V  N  K  I  L  S  S  N  R  R  P  V  *  Y  R  S  S  A  C  V  L  Y  G  S  L  N  M  F  Q  V  G  I  C  L  L  I  N  G  V  Q  *  S  L  Y  Y  L :   T  E  V  T  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66708" stop="66421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSPSGKNGLLCSWLRTGSNRQSIGCKCVTLLFVTLLFLAWHLRIGKFSMCCEQEMVSLPPRGSGKVCVHPPYTLLVGLMRFQWVCCCRKQDPIEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73640" PGL_stop="70725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73640" e_stop="73564"/>
            <exon e_start="72037" e_stop="71921"/>
            <exon e_start="71836" e_stop="71740"/>
            <exon e_start="70800" e_stop="70725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73640" e_stop="73564" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="73563" i_stop="72038" i_length="1526"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72037" e_stop="71921" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="71920" i_stop="71837" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71836" e_stop="71740" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71739" i_stop="70801" i_length="939"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70800" e_stop="70725" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73640" stop="73564"/>
              <exon start="72037" stop="71921"/>
              <exon start="71836" stop="71740"/>
              <exon start="70800" stop="70725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG : ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG : GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG : GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</gDNA_template>
            <first_frame> L  E  V  L  A  A  S  S  L  L  T  L  H  *  Y  T  E  Y  Y  L  M  N  C  F  L  R :   S  C  Q  K  R  P  H  T  P  W  V  R  Q  L  V  F  V  E  S  G  G  I  Q  F  G  T  L  Y  F  G  A  M  H  A  *  R  L  G  R :   F  L  D  W  *  K  T  I  R  S  F  T  *  S  M  M  V  H  G  E  K  C  G  F  *  D  Q  G  F  V  R  M  :  V  F  M  S  V  E  T  H  I  F  V  Q  E  *  L  S  G  R  S  L  I  Q  F  I  L  </first_frame>
            <second_frame>  W  K  C  *  Q  Q  A  V  C  *  P  C  I  D  T  P  S  T  T  *  *  T  A  F  *   : D  L  V  K  N  D  P  I  H  L  G  *  G  S  L  C  L  S  K  V  E  V  Y  N  S  E  P  C  I  L  A  Q  C  M  P  K  G  L  A   : G  F  W  I  G  R  K  L  *  G  P  S  L  E  V  *  W  F  M  E  K  N  V  A  F  K  T  K  D  S  Y  G  W :   Y  L  C  Q  S  K  H  I  Y  S  C  R  N  S  *  V  E  D  H  *  S  S  S  S  C </second_frame>
            <third_frame>   G  S  A  S  S  K  Q  F  V  D  P  A  L  I  H  R  V  L  P  D  E  L  L  F  E  :  I  L  S  K  T  T  P  Y  T  L  G  K  A  A  C  V  C  R  K  W  R  Y  T  I  R  N  P  V  F  W  R  N  A  C  L  K  A  W  Q  :  V  S  G  L  V  E  N  Y  K  V  L  H  L  K  Y  D  G  S  W  R  K  M  W  L  L  R  P  R  I  R  T  D   : G  I  Y  V  S  R  N  T  Y  I  R  A  G  I  A  E  W  K  I  T  N  P  V  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73638" stop="73564"/>
                    <exon start="72037" stop="71921"/>
                    <exon start="71836" stop="71740"/>
                    <exon start="70800" stop="70727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSASSKQFVDPALIHRVLPDELLFEILSKTTPYTLGKAACVCRKWRYTIRNPVFWRNACLKAWQVSGLVENYKVLHLKYDGSWRKMWLLRPRIRTDGIYVSRNTYIRAGIAEWKITNPVHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="81066" PGL_stop="80492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81066" e_stop="80492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="81066" e_stop="80492" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81066" stop="80492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTCAAATATCTTGAACAGGGTTCTGATGATATTACAAACGATGAAGGTATACCACAACTATTGAATTGATGGAGGAACCGTGAAACTCAATTTTCAAAACTTAGTAGGATGGTGAAGGATGTGCTTTCAATTCAAGGATCATCAGTAGCTTCGGAGGCAACTTTCAGTGCAACAAGATTTCAAATTGGAGACCACAAATATTCGTCAGCAGAAGACAACTTAGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCAGAGAAATCAAGGACTTTCAAAGTTAGATAGTCAATTTGAACTTTCTATAGATTCAGCTATTGAATGTTGTAGTGATGATGGCATCGAACTTCAAGATCGTAAACGAGCGTTACAAAGACCAAAATTTGATTATAATCAATCTATAGCTGAGTTAGAAAAAGAATTTACGGGACTATACAACTATTAGTATTACATCCGAAACTTAGTTGAAACAGAACCCTTTCTAAAAGGTGGCTATGTAAACTATGTACTCTACTAATAGTTATAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  S  D  D  I  T  N  D  E  G  I  P  Q  L  L  N  *  W  R  N  R  E  T  Q  F  S  K  L  S  R  M  V  K  D  V  L  S  I  Q  G  S  S  V  A  S  E  A  T  F  S  A  T  R  F  Q  I  G  D  H  K  Y  S  S  A  E  D  N  L  E  I  S  V  L  F  R  D  W  I  N  A  E  Q  R  N  Q  G  L  S  K  L  D  S  Q  F  E  L  S  I  D  S  A  I  E  C  C  S  D  D  G  I  E  L  Q  D  R  K  R  A  L  Q  R  P  K  F  D  Y  N  Q  S  I  A  E  L  E  K  E  F  T  G  L  Y  N  Y  *  Y  Y  I  R  N  L  V  E  T  E  P  F  L  K  G  G  Y  V  N  Y  V  L  Y  *  *  L  *  I  E   </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  S  N  I  L  N  R  V  L  M  I  L  Q  T  M  K  V  Y  H  N  Y  *  I  D  G  G  T  V  K  L  N  F  Q  N  L  V  G  W  *  R  M  C  F  Q  F  K  D  H  Q  *  L  R  R  Q  L  S  V  Q  Q  D  F  K  L  E  T  T  N  I  R  Q  Q  K  T  T  *  R  Y  Q  C  Y  L  E  I  G  *  M  L  S  R  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  L  *  I  Q  L  L  N  V  V  V  M  M  A  S  N  F  K  I  V  N  E  R  Y  K  D  Q  N  L  I  I  I  N  L  *  L  S  *  K  K  N  L  R  D  Y  T  T  I  S  I  T  S  E  T  *  L  K  Q  N  P  F  *  K  V  A  M  *  T  M  Y  S  T  N  S  Y  K  L  K  </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  Q  I  S  *  T  G  F  *  *  Y  Y  K  R  *  R  Y  T  T  T  I  E  L  M  E  E  P  *  N  S  I  F  K  T  *  *  D  G  E  G  C  A  F  N  S  R  I  I  S  S  F  G  G  N  F  Q  C  N  K  I  S  N  W  R  P  Q  I  F  V  S  R  R  Q  L  R  D  I  S  V  I  *  R  L  D  K  C  *  A  E  K  S  R  T  F  K  V  R  *  S  I  *  T  F  Y  R  F  S  Y  *  M  L  *  *  *  W  H  R  T  S  R  S  *  T  S  V  T  K  T  K  I  *  L  *  S  I  Y  S  *  V  R  K  R  I  Y  G  T  I  Q  L  L  V  L  H  P  K  L  S  *  N  R  T  L  S  K  R  W  L  C  K  L  C  T  L  L  I  V  I  N  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80961" stop="80581"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRNRETQFSKLSRMVKDVLSIQGSSVASEATFSATRFQIGDHKYSSAEDNLEISVLFRDWINAEQRNQGLSKLDSQFELSIDSAIECCSDDGIELQDRKRALQRPKFDYNQSIAELEKEFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="98227" PGL_stop="90377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98227" e_stop="98155"/>
            <exon e_start="98079" e_stop="98001"/>
            <exon e_start="97838" e_stop="97759"/>
            <exon e_start="96812" e_stop="96693"/>
            <exon e_start="95985" e_stop="95916"/>
            <exon e_start="95850" e_stop="95777"/>
            <exon e_start="90473" e_stop="90377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98227" e_stop="98155" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.981">
            <gDNA_intron_boundary i_start="98154" i_stop="98080" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98079" e_stop="98001" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="98000" i_stop="97839" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97838" e_stop="97759" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97758" i_stop="96813" i_length="946"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96812" e_stop="96693" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.935">
            <gDNA_intron_boundary i_start="96692" i_stop="95986" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95985" e_stop="95916" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="95915" i_stop="95851" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95850" e_stop="95777" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95776" i_stop="90474" i_length="5303"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90473" e_stop="90377" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98227" stop="98155"/>
              <exon start="98079" stop="98001"/>
              <exon start="97838" stop="97759"/>
              <exon start="96812" stop="96693"/>
              <exon start="95985" stop="95916"/>
              <exon start="95850" stop="95822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98158" stop="98155"/>
              <exon start="98079" stop="98001"/>
              <exon start="97838" stop="97769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97790" stop="97759"/>
              <exon start="96812" stop="96693"/>
              <exon start="95985" stop="95916"/>
              <exon start="95850" stop="95777"/>
              <exon start="90473" stop="90377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA : TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC : TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG : ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG : TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA : AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG : GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</gDNA_template>
            <first_frame> S  T  L  T  K  E  R  E  Q  L  W  R  Q  L  C  R  A  L  S  H  G  S  R  N   : I  D  R  S  K  *  R  M  *  L  T  R  M  K  S  F  E  S  S  P  T  L  S  R  L  L  T :   A  R  I  C  C  F  M  V  L  L  E  L  E  R  Q  P  L  L  L  P  L  P  I  S  F  S   : D  L  S  C  I  N  R  G  Y  W  S  *  M  L  V  M  T  V  V  S  M  *  F  V  Q  K  L  R  T  L  L  L  L  L  *  V  L  I  G  K   : V  V  I  L  A  H  L  L  R  S  *  S  L  M  K  Q  I  Q  *  L  K  M  L  K :   M  P  C  D  E  L  W  R  H  I  Q  K  L  Q  D  S  S  S  F  V  I  T  S  A   : G  S  *  S  H  L  L  L  D  V  R  S  S  D  S  S  H  F  L  K  K  *  W  A  A  E  Y  C  I  F  V  K   </first_frame>
            <second_frame>  A  L  *  Q  K  K  E  N  S  Y  G  A  S  Y  A  E  L  S  A  M  G  R  E  I  :  S  T  E  A  S  E  G  C  S  S  P  G  *  S  R  S  S  P  H  Q  H  S  R  D  F  *   : L  P  A  Y  V  V  L  W  S  S  W  N  W  K  D  N  H  C  S  C  H  C  P  S  A  F  R  :  T  *  A  V  *  I  E  G  I  G  A  K  C  *  *  *  P  W  Y  Q  C  S  S  Y  K  N  *  E  L  C  C  C  C  C  R  F  *  S  A  K  :  W  L  S  L  P  T  F  *  D  H  N  P  *  *  S  R  F  N  D  S  R  C  S   : K  C  L  A  T  N  Y  G  D  I  F  K  S  Y  K  I  L  L  H  L  *  L  H  Q  Q  :  D  H  R  A  T  C  F  *  M  C  E  V  Q  I  Q  A  T  S  *  R  N  N  G  Q  P  N  I  A  Y  L  *  R  </second_frame>
            <third_frame>   H  S  D  K  R  K  R  T  A  M  A  P  V  M  Q  S  S  Q  P  W  V  E  K  Y :   R  P  K  Q  V  K  D  V  A  H  Q  D  E  V  V  R  V  L  T  N  T  L  E  T  S  N  :  C  P  H  M  L  F  Y  G  P  P  G  T  G  K  T  T  T  A  L  A  I  A  H  Q  L  F  G :   P  E  L  Y  K  S  R  V  L  E  L  N  A  S  D  D  R  G  I  N  V  V  R  T  K  I  K  N  F  A  A  V  A  V  G  S  N  R  Q  S :   G  Y  P  C  P  P  F  K  I  I  I  L  D  E  A  D  S  M  T  Q  D  A  Q  :  N  A  L  R  R  T  M  E  T  Y  S  K  V  T  R  F  F  F  I  C  N  Y  I  S  R :   I  I  E  P  L  A  S  R  C  A  K  F  R  F  K  P  L  P  E  E  I  M  G  S  R  I  L  H  I  C  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98225" stop="98155"/>
                    <exon start="98079" stop="98001"/>
                    <exon start="97838" stop="97759"/>
                    <exon start="96812" stop="96693"/>
                    <exon start="95985" stop="95916"/>
                    <exon start="95850" stop="95777"/>
                    <exon start="90473" stop="90377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSDKRKRTAMAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIILDEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMGSRILHICKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="129631" PGL_stop="129119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129631" e_stop="129119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129631" e_stop="129119" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129631" stop="129119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGA</gDNA_template>
            <first_frame> G  D  A  N  D  S  Q  N  E  Q  Q  S  T  M  K  G  N  D  A  P  V  L  V  V  N  S  K  I  A  T  T  I  V  H  N  Q  N  T  S  S  E  E  N  A  L  Y  T  V  K  N  D  K  K  V  N  T  L  S  I  E  L  L  V  A  G  E  R  G  K  P  S  K  D  L  G  I  L  D  D  R  P  S  K  R  I  K  V  N  G  S  V  T  L  S  E  D  K  G  G  D  S  V  Q  K  F  T  V  C  T  N  D  K  E  V  M  G  T  G  A  T  P  S  E  E  R  K  K  S  G  D  S  K  L  S  G  G  L  D  K  N  M  Q  N  R  N  D  G  A  A  L  D  I  R  P  P  K  K  A  I  I  D  S  V  K  V  K  E  D  R  D  R </first_frame>
            <second_frame>  E  M  Q  M  I  L  K  M  S  S  N  Q  Q  *  K  E  M  M  R  R  C  W  L  L  T  A  K  *  P  L  Q  L  F  T  T  K  I  R  Q  V  K  K  M  H  S  T  R  L  R  M  I  K  K  L  I  H  S  Q  *  N  S  *  *  L  A  K  E  V  N  L  R  R  I  L  A  F  W  T  I  G  L  Q  N  E  *  K  *  M  V  L  *  H  Y  Q  R  T  R  V  G  T  V  Y  R  S  S  L  F  A  Q  M  T  K  R  L  W  E  Q  V  P  L  L  L  K  K  E  R  N  L  E  I  V  S  F  L  V  D  W  T  R  T  C  R  T  E  T  M  V  L  P  W  I  S  G  L  Q  R  R  Q  S  *  T  L  L  K  *  K  R  I  E  I   </second_frame>
            <third_frame>   R  C  K  *  F  S  K  *  A  A  I  N  N  E  R  K  *  C  A  G  A  G  C  *  Q  Q  N  S  H  Y  N  C  S  Q  P  K  Y  V  K  *  R  K  C  T  L  H  G  *  E  *  *  K  S  *  Y  T  L  N  R  T  L  S  S  W  R  K  R  *  T  F  E  G  S  W  H  F  G  R  *  A  F  K  T  N  K  S  K  W  F  C  D  T  I  R  G  Q  G  W  G  Q  C  T  E  V  H  C  L  H  K  *  Q  R  G  Y  G  N  R  C  H  S  F  *  R  K  K  E  I  W  R  *  *  A  F  W  W  T  G  Q  E  H  A  E  Q  K  R  W  C  C  L  G  Y  Q  A  S  K  E  G  N  H  R  L  C  *  S  E  R  G  *  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129631" stop="129119"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDANDSQNEQQSTMKGNDAPVLVVNSKIATTIVHNQNTSSEENALYTVKNDKKVNTLSIELLVAGERGKPSKDLGILDDRPSKRIKVNGSVTLSEDKGGDSVQKFTVCTNDKEVMGTGATPSEERKKSGDSKLSGGLDKNMQNRNDGAALDIRPPKKAIIDSVKVKEDRDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="141045" PGL_stop="145185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141045" e_stop="141180"/>
            <exon e_start="141259" e_stop="141287"/>
            <exon e_start="141402" e_stop="141485"/>
            <exon e_start="141584" e_stop="141637"/>
            <exon e_start="141961" e_stop="142038"/>
            <exon e_start="142160" e_stop="142213"/>
            <exon e_start="143407" e_stop="143466"/>
            <exon e_start="143557" e_stop="143652"/>
            <exon e_start="144282" e_stop="144383"/>
            <exon e_start="144497" e_stop="144577"/>
            <exon e_start="144728" e_stop="145185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.983" e_score="0.988"/>
          <exon-intron don_prob="0.517" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="141045" e_stop="141180" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="141181" i_stop="141258" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="141259" e_stop="141287" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="141288" i_stop="141401" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="141402" e_stop="141485" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.983">
            <gDNA_intron_boundary i_start="141486" i_stop="141583" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="141584" e_stop="141637" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.517" acc_prob="0.951">
            <gDNA_intron_boundary i_start="141638" i_stop="141960" i_length="323"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="141961" e_stop="142038" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="142160" e_stop="142213" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.968">
            <gDNA_intron_boundary i_start="142214" i_stop="143406" i_length="1193"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="143407" e_stop="143466" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.920">
            <gDNA_intron_boundary i_start="143467" i_stop="143556" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="143557" e_stop="143652" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="144282" e_stop="144383" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="144497" e_stop="144577" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="144728" e_stop="145185" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141045" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141066" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="144761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141066" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141066" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="141991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141067" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141072" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141072" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141077" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141123" stop="141180"/>
              <exon start="141259" stop="141287"/>
              <exon start="141402" stop="141485"/>
              <exon start="141584" stop="141637"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141985" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="144866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141992" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="144758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141992" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141993" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="144839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143407" stop="143466"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="145185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143619" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="145135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG : TTGATGAATCACTCAAAACTACTTTTCAG : AATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG : TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAG</gDNA_template>
            <first_frame> *  I  L  T  S  R  Y  I  L  F  T  F  L  H  S  L  C  P  L  S  S  L  F  L  *  *  P  C  V  *  F  Q  Q  E  S  I  A  Q  F  E  A  L  M  E  Q   : V  D  E  S  L  K  T  T  F  Q  :  N  V  H  Q  G  C  T  R  D  T  Y  R  R  F  L  I  A  R  E  G  N  V  A  N  A  H  K  M  :  L  V  D  S  L  N  W  R  V  K  N  E  I  D  D  I  L  S  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  V  H  Y  Y  V  Q  S  H  I  Q  F  N  E  Y  R  D  R  V  I  L  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y   </first_frame>
            <second_frame>  E  S  *  P  R  D  I  F  Y  L  L  F  F  I  R  S  V  L  S  L  L  C  F  C  S  S  H  V  C  D  F  S  K  N  P  S  L  S  L  K  L  *  W  N  K  :  L  M  N  H  S  K  L  L  F  R :   M  F  I  K  V  V  Q  G  I  H  I  G  G  S  *  *  Q  E  R  E  M  L  Q  M  L  I  K  C :   W  L  I  L  *  I  G  E  S  K  M  R  *  M  I  F  Y  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   S  I  I  M  C  N  H  T  F  S  S  M  N  I  A  I  V  *  F  C :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  </second_frame>
            <third_frame>   N  L  D  L  A  I  Y  F  I  Y  F  S  S  F  A  L  S  S  L  F  S  V  S  V  V  A  M  C  V  I  S  A  R  I  H  R  S  V  *  S  F  N  G  T  S :   *  *  I  T  Q  N  Y  F  S   : E  C  S  S  R  L  Y  K  G  Y  I  S  A  V  P  N  S  K  R  G  K  C  C  K  C  S  *  N   : V  G  *  F  F  E  L  E  S  Q  K  *  D  R  *  Y  F  I   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : G  P  L  L  C  A  I  T  H  S  V  Q  *  I  S  R  S  C  N  S   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141135" stop="141180"/>
                    <exon start="141259" stop="141287"/>
                    <exon start="141402" stop="141485"/>
                    <exon start="141584" stop="141637"/>
                    <exon start="141961" stop="142038"/>
                    <exon start="142160" stop="142213"/>
                    <exon start="143407" stop="143466"/>
                    <exon start="143557" stop="143652"/>
                    <exon start="144282" stop="144383"/>
                    <exon start="144497" stop="144577"/>
                    <exon start="144728" stop="145051"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQQESIAQFEALMEQVDESLKTTFQNVHQGCTRDTYRRFLIAREGNVANAHKMLVDSLNWRVKNEIDDILSKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASVHYYVQSHIQFNEYRDRVILPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="141063" e_stop="141180"/>
            <exon e_start="141961" e_stop="142038"/>
            <exon e_start="142160" e_stop="142213"/>
            <exon e_start="143557" e_stop="143652"/>
            <exon e_start="144282" e_stop="144383"/>
            <exon e_start="144497" e_stop="144577"/>
            <exon e_start="144728" e_stop="145135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="0.992"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="141063" e_stop="141180" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="141181" i_stop="141960" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="141961" e_stop="142038" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="142039" i_stop="142159" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142160" e_stop="142213" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.920">
            <gDNA_intron_boundary i_start="142214" i_stop="143556" i_length="1343"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143557" e_stop="143652" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="143653" i_stop="144281" i_length="629"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144282" e_stop="144383" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="144384" i_stop="144496" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144497" e_stop="144577" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="144578" i_stop="144727" i_length="150"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="144728" e_stop="145135" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141063" stop="141180"/>
              <exon start="141961" stop="142038"/>
              <exon start="142160" stop="142213"/>
              <exon start="143557" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143619" stop="143652"/>
              <exon start="144282" stop="144383"/>
              <exon start="144497" stop="144577"/>
              <exon start="144728" stop="145135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAG</gDNA_template>
            <first_frame> Y  I  L  F  T  F  L  H  S  L  C  P  L  S  S  L  F  L  *  *  P  C  V  *  F  Q  Q  E  S  I  A  Q  F  E  A  L  M  E  Q   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  </first_frame>
            <second_frame>  I  F  Y  L  L  F  F  I  R  S  V  L  S  L  L  C  F  C  S  S  H  V  C  D  F  S  K  N  P  S  L  S  L  K  L  *  W  N  K  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  * </second_frame>
            <third_frame>   Y  F  I  Y  F  S  S  F  A  L  S  S  L  F  S  V  S  V  V  A  M  C  V  I  S  A  R  I  H  R  S  V  *  S  F  N  G  T  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141172" stop="141180"/>
                    <exon start="141961" stop="142038"/>
                    <exon start="142160" stop="142213"/>
                    <exon start="143557" stop="143652"/>
                    <exon start="144282" stop="144383"/>
                    <exon start="144497" stop="144577"/>
                    <exon start="144728" stop="145051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNKKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="152464" PGL_stop="148725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="152464" e_stop="152431"/>
            <exon e_start="152167" e_stop="152052"/>
            <exon e_start="151968" e_stop="151873"/>
            <exon e_start="149611" e_stop="148977"/>
            <exon e_start="148740" e_stop="148725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="152464" e_stop="152431" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.918">
            <gDNA_intron_boundary i_start="152430" i_stop="152168" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="152167" e_stop="152052" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="151968" e_stop="151873" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="149611" e_stop="148977" e_length="635"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="148976" i_stop="148741" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="148740" e_stop="148725" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152464" stop="152431"/>
              <exon start="152167" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152464" stop="152431"/>
              <exon start="152167" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152464" stop="152431"/>
              <exon start="152167" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151913" stop="151873"/>
              <exon start="149611" stop="148977"/>
              <exon start="148740" stop="148725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT : TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> R  V  N  I  C  *  L  *  L  R  P   : F  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </first_frame>
            <second_frame>  E  S  T  F  A  S  S  N  *  D  R  :  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </second_frame>
            <third_frame>   S  Q  H  L  L  A  L  I  E  T  V :   Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152440" stop="152431"/>
                    <exon start="152167" stop="152052"/>
                    <exon start="151968" stop="151873"/>
                    <exon start="149611" stop="149312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPFNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="152353" e_stop="152274"/>
            <exon e_start="152167" e_stop="152052"/>
            <exon e_start="151968" e_stop="151873"/>
            <exon e_start="149611" e_stop="148977"/>
            <exon e_start="148740" e_stop="148725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="152353" e_stop="152274" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="152273" i_stop="152168" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="152167" e_stop="152052" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="151968" e_stop="151873" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="149611" e_stop="148977" e_length="635"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="148976" i_stop="148741" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="148740" e_stop="148725" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152353" stop="152274"/>
              <exon start="152167" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152353" stop="152274"/>
              <exon start="152167" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151913" stop="151873"/>
              <exon start="149611" stop="148977"/>
              <exon start="148740" stop="148725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA : TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> R  K  L  I  *  N  S  N  F  *  F  W  L  R  L  F  L  V  S  E  Y  C  C  C  S  S  H :   Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </first_frame>
            <second_frame>  E  N  *  F  R  T  Q  I  F  N  F  G  F  A  S  F  W  S  A  S  I  V  V  V  L  L   : I  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </second_frame>
            <third_frame>   K  I  N  L  E  L  K  F  L  I  L  A  S  P  L  F  G  Q  R  V  L  L  L  F  F  S  :  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152343" stop="152274"/>
                    <exon start="152167" stop="152052"/>
                    <exon start="151968" stop="151873"/>
                    <exon start="149611" stop="149312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTQIFNFGFASFWSASIVVVLLINMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="152250" e_stop="152052"/>
            <exon e_start="151968" e_stop="151873"/>
            <exon e_start="149611" e_stop="148977"/>
            <exon e_start="148740" e_stop="148725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="152250" e_stop="152052" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="151968" e_stop="151873" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="151872" i_stop="149612" i_length="2261"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="149611" e_stop="148977" e_length="635"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="148976" i_stop="148741" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="148740" e_stop="148725" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152250" stop="152052"/>
              <exon start="151968" stop="151873"/>
              <exon start="149611" stop="149331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151913" stop="151873"/>
              <exon start="149611" stop="148977"/>
              <exon start="148740" stop="148725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> K  K  R  V  F  S  A  L  M  E  *  *  F  Y  L  F  S  C  A  N  L  N  V  Y  V  K  F  S  Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </first_frame>
            <second_frame>  K  K  G  F  F  L  L  *  W  S  S  N  F  I  C  F  H  V  L  I  *  M  Y  M  S  N  S  V  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </second_frame>
            <third_frame>   K  K  G  F  F  C  F  N  G  V  V  I  L  F  V  F  M  C  *  F  E  C  I  C  Q  I  Q  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152186" stop="152052"/>
                    <exon start="151968" stop="151873"/>
                    <exon start="149611" stop="149312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYMSNSVNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="152344" e_stop="152052"/>
            <exon e_start="151968" e_stop="151735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="152344" e_stop="152052" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="152051" i_stop="151969" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="151968" e_stop="151735" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152344" stop="152052"/>
              <exon start="151968" stop="151735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</gDNA_template>
            <first_frame> I  *  N  S  N  F  *  F  W  L  R  L  F  L  V  S  E  Y  C  C  C  S  S  Q  L  S  H  F  I  V  P  *  K  K  G  F  F  C  F  N  G  V  V  I  L  F  V  F  M  C  *  F  E  C  I  C  Q  I  Q  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  W  *  V  L  N  P  L  K  P  Q  I  H  L  L  D  *  S  C  V  S  Y  C  F  E  L  H  L  H  N  L  G  L  F  L  K  E  *  K  L  L  A  S  C  V  N  V   </first_frame>
            <second_frame>  F  R  T  Q  I  F  N  F  G  F  A  S  F  W  S  A  S  I  V  V  V  L  L  S  *  V  I  L  L  Y  P  K  K  R  V  F  S  A  L  M  E  *  *  F  Y  L  F  S  C  A  N  L  N  V  Y  V  K  F  S  Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I  G  E  F  *  T  L  S  S  L  K  F  I  Y  L  T  N  L  V  S  H  T  V  L  N  Y  T  C  I  I  L  D  Y  F  L  K  N  E  N  C  W  H  H  V  *  M  L  </second_frame>
            <third_frame>   L  E  L  K  F  L  I  L  A  S  P  L  F  G  Q  R  V  L  L  L  F  F  S  V  E  S  F  Y  C  T  L  K  K  G  F  F  L  L  *  W  S  S  N  F  I  C  F  H  V  L  I  *  M  Y  M  S  N  S  V  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  V  S  F  E  P  S  Q  A  S  N  S  F  T  *  L  I  L  C  L  I  L  F  *  T  T  L  A  *  S  W  I  I  S  *  R  M  K  I  V  G  I  M  C  K  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152186" stop="152052"/>
                    <exon start="151968" stop="151831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYMSNSVNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLVSFEPSQASNSFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="148729" PGL_stop="149427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148729" e_stop="148751"/>
            <exon e_start="149002" e_stop="149427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.389" e_score="0.783"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.783">
            <gDNA_exon_boundary e_start="148729" e_stop="148751" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.389">
            <gDNA_intron_boundary i_start="148752" i_stop="149001" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="149002" e_stop="149427" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148729" stop="148751"/>
              <exon start="149002" stop="149427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTTTTCTCTTTGTGAA : CTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</gDNA_template>
            <first_frame> F  L  F  F  L  F  V  N :   F  N  A  S  I  S  *  R  *  Q  S  K  *  R  *  A  S  P  K  I  Q  N  S  N  G  M  L  I  H  Q  L  N  A  A  I  E  K  N  *  E  K  Q  C  S  N  K  D  L  A  G  A  Q  V  H  T  I  M  N  I  Y  N  T  F  E  I  Q  L  S  A  G  S  P  T  G  Y  I  T  H  A  K  P  L  P  A  T  R  K  *  I  *  G  P  T  N  P  N  F  N  R  S  I  S  V  L  L  R  G  S  C  R  R  E  I  D  Q  Y  D  L  Q  F  Y  I  P  R  I  H  I  T  K  P  Q  P  D  I  L  N  N  L  T  I  H   </first_frame>
            <second_frame>  F  Y  F  F  S  L  *   : T  L  M  H  R  F  L  K  D  S  S  Q  N  D  D  E  L  H  Q  K  Y  R  T  A  M  V  C  *  S  I  S  S  M  L  L  L  K  R  T  R  R  S  N  V  L  T  R  I  *  L  E  H  K  Y  T  P  L  *  I  Y  I  I  H  L  R  Y  N  *  V  L  A  L  L  L  D  I  S  H  M  L  N  L  Y  L  R  Q  E  S  K  S  K  D  Q  P  I  L  T  S  T  D  L  S  P  S  Y  L  E  G  A  A  E  G  R  S  I  N  M  I  F  S  S  I  S  P  E  S  T  S  Q  S  L  N  Q  T  S  *  T  T  S  P  F  T  </second_frame>
            <third_frame>   F  I  F  S  L  C  E  :  L  *  C  I  D  F  L  K  I  A  V  K  M  T  M  S  F  T  K  N  T  E  Q  Q  W  Y  V  N  P  S  A  Q  C  C  Y  *  K  E  L  G  E  A  M  F  *  Q  G  F  S  W  S  T  S  T  H  H  Y  E  Y  I  *  Y  I  *  D  T  T  K  C  W  L  S  Y  W  I  Y  H  T  C  *  T  F  T  C  D  K  K  V  N  L  R  T  N  Q  S  *  L  Q  Q  I  Y  L  R  L  T  *  R  E  L  Q  K  G  D  R  S  I  *  S  S  V  L  Y  P  Q  N  P  H  H  K  A  S  T  R  H  L  E  Q  P  H  H  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149205" stop="149408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLALLLDISHMLNLYLRQESKSKDQPILTSTDLSPSYLEGAAEGRSINMIFSSISPESTSQSLNQTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="152969" PGL_stop="154125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="152969" e_stop="152987"/>
            <exon e_start="153662" e_stop="154125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.579"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="152969" e_stop="152987" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="152988" i_stop="153661" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="153662" e_stop="154125" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152969" stop="152987"/>
              <exon start="153662" stop="154125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTTATATATTAAAT : GGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</gDNA_template>
            <first_frame> N  F  L  Y  I  K   : W  C  *  C  Y  W  F  H  T  P  Q  N  A  Y  K  S  T  V  H  K  N  P  R  I  I  *  R  R  E  E  L  Q  Q  T  H  F  C  Y  *  S  K  Q  T  K  Y  T  K  *  R  H  K  T  T  T  K  T  E  L  Q  H  R  I  G  S  S  G  K  L  M  P  T  Y  Y  T  R  A  V  Q  C  L  R  E  L  L  L  M  H  I  S  Y  L  *  T  A  A  T  Q  T  M  G  M  H  I  L  V  L  A  P  Y  L  L  I  N  L  *  P  T  I  F  Y  V  V  N  C  T  S  *  T  Y  *  C  Y  C  *  W  Y  H  L  P  R  M  T  V  F  G  L  M  L  L  A  L  Q  D  A  A </first_frame>
            <second_frame>  I  F  Y  I  L  N  :  G  A  N  V  T  G  S  I  H  H  K  M  L  T  N  L  Q  F  T  R  I  R  G  S  Y  E  G  G  R  N  Y  N  R  R  T  S  V  T  N  L  N  K  Q  N  I  Q  N  E  D  T  R  L  Q  Q  K  P  S  C  N  T  G  S  V  R  R  V  S  *  C  Q  L  T  T  L  E  L  Y  N  A  *  E  N  C  Y  *  C  I  S  V  T  S  R  P  Q  L  H  K  L  W  E  C  T  F  L  S  L  L  P  T  F  *  *  T  C  D  L  P  F  S  M  W  *  T  V  L  H  K  L  I  N  V  T  V  N  G  I  I  F  L  G  *  R  Y  L  D  *  C  Y  L  L  S  R  M  L   </second_frame>
            <third_frame>   F  F  I  Y  *  M :   V  L  M  L  L  V  P  Y  T  T  K  C  L  Q  I  Y  S  S  Q  E  S  A  D  H  M  K  E  G  G  T  T  T  D  A  L  L  L  L  I  *  T  N  K  I  Y  K  M  K  T  Q  D  Y  N  K  N  R  A  A  T  Q  D  R  F  V  G  *  V  N  A  N  L  L  H  *  S  C  T  M  P  K  R  T  A  I  D  A  Y  Q  L  P  L  D  R  S  Y  T  N  Y  G  N  A  H  S  C  P  C  S  L  P  F  N  K  P  V  T  Y  H  F  L  C  G  K  L  Y  F  I  N  L  L  M  L  L  L  M  V  S  S  S  *  D  D  G  I  W  I  D  A  T  C  S  P  G  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152970" stop="152987"/>
                    <exon start="153662" stop="153865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYILNGANVTGSIHHKMLTNLQFTRIRGSYEGGRNYNRRTSVTNLNKQNIQNEDTRLQQKPSCNTGSVRRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153885" stop="154079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTMPKRTAIDAYQLPLDRSYTNYGNAHSCPCSLPFNKPVTYHFLCGKLYFINLLMLLLMVSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="157295" PGL_stop="153496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157295" e_stop="157246"/>
            <exon e_start="157136" e_stop="157099"/>
            <exon e_start="156619" e_stop="156557"/>
            <exon e_start="156474" e_stop="156320"/>
            <exon e_start="154707" e_stop="154301"/>
            <exon e_start="154215" e_stop="153623"/>
            <exon e_start="153507" e_stop="153496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.388" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="157295" e_stop="157246" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="157245" i_stop="157137" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="157136" e_stop="157099" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.684">
            <gDNA_intron_boundary i_start="157098" i_stop="156620" i_length="479"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="156619" e_stop="156557" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="156556" i_stop="156475" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="156474" e_stop="156320" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="156319" i_stop="154708" i_length="1612"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="154707" e_stop="154301" e_length="407"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="154300" i_stop="154216" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="154215" e_stop="153623" e_length="593"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.388">
            <gDNA_intron_boundary i_start="153622" i_stop="153508" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="153507" e_stop="153496" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157295" stop="157246"/>
              <exon start="157136" stop="157099"/>
              <exon start="156619" stop="156557"/>
              <exon start="156474" stop="156320"/>
              <exon start="154707" stop="154301"/>
              <exon start="154215" stop="154184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157294" stop="157246"/>
              <exon start="157136" stop="157099"/>
              <exon start="156619" stop="156557"/>
              <exon start="156474" stop="156320"/>
              <exon start="154707" stop="154455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157294" stop="157246"/>
              <exon start="157136" stop="157099"/>
              <exon start="156619" stop="156557"/>
              <exon start="156474" stop="156320"/>
              <exon start="154707" stop="154594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156362" stop="156320"/>
              <exon start="154707" stop="154301"/>
              <exon start="154215" stop="153817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156362" stop="156320"/>
              <exon start="154707" stop="154301"/>
              <exon start="154215" stop="153877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154560" stop="154301"/>
              <exon start="154215" stop="153960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154540" stop="154301"/>
              <exon start="154215" stop="153623"/>
              <exon start="153507" stop="153496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540863" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG : GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA : ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT : GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG : GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT : AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGT : GAAAAGAGAAAA</gDNA_template>
            <first_frame> W  K  R  S  V  G  S  L  L  V  V  C  R  N  L  *  R :   V  Q  I  P  K  R  V  Q  A  P  R  K   : N  L  E  R  G  K  K  E  L  L  L  P  P  G  K  R  R  R  P  I  R   : C  L  H  Y  R  Q  Y  E  G  R  E  L  Q  G  R  I  *  S  M  D  K  K  V  H  Q  N  L  L  *  A  E  E  A  C  F  *  A  S  R  *  *  P  Q  S  P  R  R  T  I  *  A  Q  :  V  N  Q  K  V  S  R  K  K  A  R  M  S  S  A  C  L  N  M  N  C  L  T  R  M  T  *  H  T  L  M  G  N  P  G  L  M  L  I  D  *  V  V  W  R  S  L  K  K  K  N  V  P  W  K  I  K  M  R  M  N  L  A  P  L  R  I  L  V  D  Q  T  G  R  S  L  L  H  M  R  N  H  M  Q  M  V  P  Q  R  S  Q  M  M  M  L  K  D  Q  I  L  M  G  V  *  E  M  M  Q  T  V  I  Q  L  I  K  A  T  L  E  V  A  R  L  P  N  L  M  K  N  Y  P  T  M  S  Y  L :   A  R  G  N  N  E  Q  G  S  R  L  E  G  S  K  P  A  E  R  L  S  C  E  *  L  M  I  C  S  D  A  A  S  W  R  A  S  S  I  N  P  N  T  V  I  L  G  R  *  Y  H  *  Q  *  H  *  *  V  Y  E  V  Q  F  T  T  *  K  M  V  G  H  R  F  I  K  R  *  G  A  R  T  R  M  C  I  P  I  V  C  V  A  A  V  *  R  *  L  I  C  I  N  S  S  S  L  R  H  C  T  A  L  V  *  *  V  G  I  N  L  P  D  E  P  I  L  C  C  S  S  V  F  V  V  V  L  C  L  H  F  V  Y  F  V  C  L  D  *  *  Q  K  C  V  C  C  S  S  S  L  L  H  M  I  R  G  F  L  *  T  V  D  L  *  A  F  C  G  V  W  N  Q  *  H  *  H  P  F  H  F  F  F  A  S  N  S  Q  Y  L   : *  K  E  K  </first_frame>
            <second_frame>  G  K  G  V  L  G  A  C  W  W  C  A  E  T  C  E   : G  F  K  F  Q  K  G  F  R  L  Q  E  R  :  I  W  R  E  E  K  K  N  S  C  C  L  Q  A  K  E  G  D  R  *  D  :  V  S  I  I  A  S  T  R  E  E  N  S  K  E  E  F  E  V  W  T  K  R  S  I  K  I  F  F  E  Q  K  K  P  A  F  R  Q  A  V  D  N  L  K  V  Q  G  G  Q  F  K  L  R :   *  I  R  K  *  A  E  R  K  H  A  *  V  Q  L  V  *  T  *  T  V  *  Q  G  *  H  S  I  L  *  W  E  T  R  G  *  C  *  *  I  E  W  Y  G  G  V  *  R  R  R  M  S  R  G  K  *  R  *  G  *  T  W  H  P  S  G  F  S  W  I  R  Q  G  D  L  F  F  T  *  E  T  T  C  R  W  F  H  R  E  V  K  *  *  C  *  K  I  R  F  S  W  E  C  K  R  *  C  R  Q  S  F  N  *  S  R  R  L  W  K  *  L  G  C  Q  I  *  *  R  I  I  R  R  *  A  T   : *  H  V  E  T  T  S  R  E  V  G  W  R  E  V  N  Q  Q  K  G  Y  H  V  N  D  *  *  F  V  A  M  Q  H  P  G  E  Q  V  A  S  I  Q  I  P  S  S  *  E  D  D  T  I  N  S  N  I  N  K  F  M  K  Y  S  L  P  H  R  K  W  *  V  T  G  L  L  K  G  R  E  Q  G  Q  E  C  A  F  P  *  F  V  *  L  R  S  R  G  N  *  Y  A  S  I  A  V  L  L  G  I  V  Q  L  *  C  S  K  L  A  L  T  Y  P  T  N  R  S  C  V  A  A  R  F  L  L  *  S  C  V  F  I  L  Y  I  L  F  V  *  I  S  N  R  S  A  S  V  V  V  P  P  S  F  I  *  S  A  D  S  C  E  L  *  I  C  K  H  F  V  V  Y  G  T  S  N  I  S  T  L  F  T  S  F  L  L  L  I  L  N  I  C  :  E  K  R  K </second_frame>
            <third_frame>   E  K  E  C  W  E  L  V  G  G  V  Q  K  P  V  K  :  G  S  N  S  K  K  G  S  G  S  K  K  E :   S  G  E  R  K  K  R  T  L  A  A  S  R  Q  K  K  E  T  D  K  M :   S  P  L  S  P  V  R  G  K  R  T  P  R  K  N  L  K  Y  G  Q  K  G  P  S  K  S  S  L  S  R  R  S  L  L  L  G  K  P  L  I  T  S  K  S  K  A  D  N  L  S  S   : G  E  S  E  S  E  Q  K  E  S  T  H  E  F  S  L  S  E  H  E  L  S  D  K  D  D  I  A  Y  F  D  G  K  P  G  A  D  A  D  R  L  S  G  M  E  E  S  E  E  E  E  C  P  V  E  N  K  D  E  D  E  L  G  T  P  Q  D  S  R  G  S  D  R  E  I  S  S  S  H  E  K  P  H  A  D  G  S  T  E  K  S  N  D  D  A  E  R  S  D  S  H  G  S  V  R  D  D  A  D  S  H  S  T  D  Q  G  D  S  G  S  S  S  A  A  K  S  D  E  E  L  S  D  D  E  L  L  :  S  T  W  K  Q  R  A  G  K  S  A  G  G  K  *  T  S  R  K  A  I  M  *  M  T  D  D  L  *  R  C  S  I  L  E  S  K  *  H  Q  S  K  Y  R  H  P  R  K  M  I  P  L  T  V  T  L  I  S  L  *  S  T  V  Y  H  I  E  N  G  R  S  Q  V  Y  *  K  V  G  S  K  D  K  N  V  H  S  H  S  L  C  S  C  G  L  E  V  T  D  M  H  Q  *  Q  F  S  *  A  L  Y  S  S  S  V  V  S  W  H  *  L  T  R  R  T  D  P  V  L  Q  L  G  F  C  C  S  L  V  S  S  F  C  I  F  C  L  F  R  L  V  T  E  V  R  L  L  *  F  L  P  P  S  Y  D  P  R  I  L  V  N  C  R  F  V  S  I  L  W  C  M  E  P  V  T  L  A  P  F  S  L  L  F  C  F  *  F  S  I  F  V :   K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157293" stop="157246"/>
                    <exon start="157136" stop="157099"/>
                    <exon start="156619" stop="156557"/>
                    <exon start="156474" stop="156320"/>
                    <exon start="154707" stop="154301"/>
                    <exon start="154215" stop="154171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKECWELVGGVQKPVKGSNSKKGSGSKKESGERKKRTLAASRQKKETDKMSPLSPVRGKRTPRKNLKYGQKGPSKSSLSRRSLLLGKPLITSKSKADNLSSGESESEQKESTHEFSLSEHELSDKDDIAYFDGKPGADADRLSGMEESEEEECPVENKDEDELGTPQDSRGSDREISSSHEKPHADGSTEKSNDDAERSDSHGSVRDDADSHSTDQGDSGSSSAAKSDEELSDDELLSTWKQRAGKSAGGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 207 chains have been computed
$ 
$ memory statistics:
$ 1312752 bytes spliced alignments in total
$ 78 spliced alignments have been stored
$ 16830 bytes was the average size of a spliced alignment
$ 34888 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1516 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 266 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:59:21
-->
