<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 20:49:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M221-F" ref_strand="+" ref_description="SGN-M221-F TG497-F [rflp_markers_forward]">
      <seq>tgtttgtgttcttggtggcggagagtgaagatgcattggttaagaggttgattgataggaagactgagactaaagagactttgctagtgagaattgcaacgtctcgagaggaagtgaggcatatgggggagtttgattatgtggtagtgaatagagaaggagagttggagaattctgttaagttaatggagtctattattgatgctgagaaagctaaagtgaggcaaagaacagtgacaatttagagagtctgtttttcagttttttgatctgtttttgattaagttgagctgatactcttaatgttgtcttgtattcaatttatgcaacattgtttttcctacttgtgttaaccgtgtcgagctcttggttggttaaagtagatgagatgttacttcttgcctttgatcgatgacatagttgttttgttatggtttaattttgatttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="+" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="28832" stop="29884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29132" g_stop="29584" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="+" ref_id="SGN-M221-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M221-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29132" e_stop="29584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTACTTGTGTTAACCGTGTCGAGCTCTTGGTTGGTTAAAGTAGATGAGATGTTACTTCTTGCCTTTGATCGATGACATAGTTGTTTTGTTATGGTTTAATTTTGATTTCTAAT</genome_strand>
        <mrna_strand>TGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTACTTGTGTTAACCGTGTCGAGCTCTTGGTTGGTTAAAGTAGATGAGATGTTACTTCTTGCCTTTGATCGATGACATAGTTGTTTTGTTATGGTTTAATTTTGATTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M355-F" ref_strand="+" ref_description="SGN-M355-F TG629-F [rflp_markers_forward]">
      <seq>tactcaactagcagcaaactagatattttattatgtatctattttctaaaatttgtataatgttatctacttctactggcacccatgctacaagaagcttaaatggtgcactttattgaatacaacaaagatttcaagccatgctgagaagactactgaaagagagagtctcatacatacactgaatgatgatatgaattatctttcttttctaacaattgcatgaaaagagcagttaaatcttaaatgagttgttctagttcagatgaatagacagggcaagaggatcatcttctatctttatgcagaacagtgattgataggcttaacagaattggcaacacacaacatactactcaaaatgaacataaacagatacatcaagttccagagggagcacaatggaacagagatgcaaactgacgacactattaacataggcaagaattgcctttcggttcagacaatatctcaaacgagatggtaatatgctttgctgaataagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="-" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30720" stop="29614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30420" g_stop="29914" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="-" ref_id="SGN-M355-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M355-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30420" e_stop="29914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGGTAATATGCTTTGCTGAATAAGAC</genome_strand>
        <mrna_strand>TACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGGTAATATGCTTTGCTGAATAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M355-R" ref_strand="+" ref_description="SGN-M355-R TG629-R [rflp_markers_reverse]">
      <seq>caggttactcaactagcagcaaactagatattttattatgtatctattttctaaaatttgtataatgttatctacttctactggcacccatgctacaagaagcttaaatggtgcactttattgaatacaacaaagatttcaagccatgctgagaagactactgaaagagagagtctcatacatacactgaatgatgatatgaattatctttcttttctaacaattgcatgaaaagagcagttaaatcttaaatgagttgttctagttcagatgaatagacagggcaagaggatcatcttctatctttatgcagaacagtgattgataggcttaacagaattggcaacacacaacatactactcaaaatgaacataaacagatacatcaagttccagagggagcacaatggaacagagatgcaaactgacgacactattaacataggcaagaattgcctttcggttcagacaatatctcaaacgagatggtaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="-" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30725" stop="29632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30425" g_stop="29932" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="-" ref_id="SGN-M355-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M355-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30425" e_stop="29932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGGTAATA</genome_strand>
        <mrna_strand>CAGGTTACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M221-R" ref_strand="+" ref_description="SGN-M221-R TG497-R [rflp_markers_reverse]">
      <seq>tactcaactagcagcaaactagatattttattatgtatctattttctaaaatttgtataatgttatctacttctactggcacccatgctacaagaagcttaaatggtgcactttattgaatacaacaaagatttcaagccatgctgagaagactactgaaagagagagtctcatacatacactgaatgatgatatgaattatctttcttttctaacaattgcatgaaaagagcagttaaatcttaaatgagttgttctagttcagatgaatagacagggcaagaggatcatcttctatctttatgcagaacagtgattgataggcttaacagaattggcaacacacaacatactactcaaaatgaacataaacagatacatcaagttccagagggagcacaatggaacagagatgcaaactgacgacactattaacataggcaagaattgcctttcggttcagacaatatctcaaacgagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="-" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="30720" stop="29637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30420" g_stop="29937" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="-" ref_id="SGN-M221-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M221-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30420" e_stop="29937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGG</genome_strand>
        <mrna_strand>TACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M2106" ref_strand="+" ref_description="SGN-M2106 T1574 [cos_markers]">
      <seq>gaggctgaattcgatgagaatgaagataattctgtttgggaagcttcaaagagccatggtttacatccatgcattaagccaactgcaaaatacaaagctgctctaggatggaatcgctacttgactgtaaaaagtaatggtggattaaatcaaatgaggacgggtatagctgacatggtggcagtggcacatgtgatgaatgcaactttggtaattcctcaattggacaagcgttcattctggcaagattcaagatatatttgatgagaaccatttcattaaagcattacgaggagacctcatgattattaaagagcttcctaaagaaatagaatctttacctcgagctaggaagcacttcacgtcatggtcaggagtgggttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="+" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="41247" stop="45674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41552" g_stop="41630" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41631" i_stop="42030" i_length="400">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42031" g_stop="42098" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="165" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42099" i_stop="44672" i_length="2574">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44673" g_stop="44761" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="254" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44762" i_stop="45240" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45241" g_stop="45374" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="388" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="+" ref_id="SGN-M2106" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41552" e_stop="41630"/>
          <exon e_start="42031" e_stop="42098"/>
          <exon e_start="44673" e_stop="44761"/>
          <exon e_start="45241" e_stop="45374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAGGTTAAACTCTACTACTACAGCTTGTGCTTCTTTTGCTACCTGCTAGTTAATATGGAAAAAAGGTATCTCCATTGCCTTTTGGGAGCACTAATTTTTTCTGAATTTTGTAAAAGGGAAATACTTGATTATCTCAAGATCTCATTTTTCAGATTCTTTTTATAGGGTGTGGGGACAATTTTCTGTATGTCGTTTCTTATGTGTTCTATCAGTTCATGCCTGTGTTTGTTTAAAGCTGAAACAGCGTATTTCAGTCATAAAAATAGATAAAAGATCATGCCTTTGCTGTTTTCTATCAATTGCAATCTCTTAAACATGTACCAACTCATGCACAATATGAACCTTTTGTATGCTGTAACTTTTAAGCAGATAGTCTTATGCAGAATTTATACTTCTTGTCCAGCTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGTGTAAGTTTGATCTTTCCTTAGATTTCTAATTTCCATTTTCTGTGTGTATGTTACATAATTGTTCTTGTTTTTAATCCACAATAATTCAAAGAAATTGCTTTCATGCTACGGTTAGACGAGCTAAAAGTGTGGATTAGCTTAAACATGTAAATGCTAGTGGGCATGTAGTAACTTGTATGCACTTCTACTTGTATATTCCTAGGGTATCATTCAACAAGTTAACTTGATTGAAGCTGAGCCATTTAAAACCTTCAGCTTAGAAATAGATATTAAAGTAAGACAAATTAAAGTGGGCCTTTAAGTTTATACGCTGTTTGGAATGAAGTCTGTAAAAATAGCATTCATAGATAAAGGGGGTGGGGGGGAAGTTAACAAAAAAAGCAGTCTCATACGAAGTTGTGTTGCTGCAAGGAAATAGCTAAATGATGCACTAGCAATTTGATGATTCTTTAAATTTGAGACATATTTGGTATACAGAAAAACACTTTTCTCATTTATACTTTTTATCACATAAAATAATCATAACATGTCATATGAATGGGAATTAGATTTCTATAAGACCAGAAAACGTTGTTCCCAGCAAGAAGACGATGAATTATGATTGTAAGTTGGCATAGTTTTGGAAAGAAATGGCAGATCTGGACATGTCTATTGGTTAAGGTTGACCTCGCCCAATTTTATTAGCTTGATCTCCTTTTCTCTTCATGGAAAATTAAATAAACGTCCAAGTTTTTGTGGCATCACAGAAACTTACATGTTAATTTTGTAAGTTTACTTCAAATCCTCAAAACCCTAACTTGGCAACAAAAAGAAAGAATGGTTATTTTGAAAACAGAGTTGCCACTTAATTTTGCAAGGCAATTATGAAAACCTTTAATTTTTAAAAAAAGATTCTAACAGAAAAATCTTTTCAAAATTTCAAAGATAGGGTTCCTATTAACATTTCGAGAAGGTTCTAAGCCCTTGAAATGTCTGCTTAACACATGGTTATCTGTTGATTTAACTAAACAATTATTTGACTAACTTAATTGATTGAAGAATTTCTTAAATTTTTTAATATGTGAAAGGAAAAAGTATTTTTGGCATTTTGTTGAAAAGAAAAGCTCTTTTGGACTGTTTGAAAAGAAAAACTCTTTTGAAACTCTCAAGGCAATCTAAGTTAATTTAAAACTTCAGTATTTAAGACAAATAAAATTACAAGGAACCAAAAATAAAACATAGCAACTCAAGGGGGATTCATCCAAGTTAGAATGAATGTTAGTATACAATACAATGAAATCAAGAAATAAGAGAAAATTTAAATTGGGCTCCTGAGACCCAATCTTTGCTACTAACAGATGATCTTCAGGCTCTATGCAGTATTACTGCTCCTACCCCATTTTATCTGCTCCTGCTGATGTAATTTCGGCCTCTGGACAGATTTATCTTCCATTTTCACACTGTTTGAGGCTGACTCAAAAGACATGTATTGAGCTTTAAGCAAATGCCAAAAATGATTGACTTAACTTAATGTCATACAATGCTTTGAAATTATGATAATAAAAATTTGAATAAGAACTCCATTTTTTGACCATTTTTGAGTTTTAACTCTATATCCAGATAATGAAATCATGCACCATACATATTTGATTCATATGTGTCAAATTAGAAACCTGGAACTTATCATACGTGTAAATCAAATTGAGTATTATGCTAACTAGAAGAATTAGTTTCCTCAAACCAAAGCTATCAGTCATACCAAATTCTATAGGTCACTAAGTTAACTTCAAATTCTTTCTCAAAATAAAATAAAATAGTTAACTTTAAATTGAAACATATCATAAAAATAAGATTTCATCTACTCTTAATCTACGAATTGAACATATCATAGAATAAGATATTCATCTACTCTTAATCCACTTTTAAAGTTACTAGATCAAATAATATTTTTACTTAGTAAGGAATTGACATGTTGCCAGGAAAATCTAAGACTCGATTTTTCAAAGATAGGCAAAATATCAGACAGGAAATAAACGCATAAGTGTCACTTTATTTTAAAGATGAGCTGATTTACGGGTGGAAAAAGGATGAGACGGACAGGAATTTGCCCGTGGATTTGGGATTTGCACATCCGAGGGTTGACTTGCGTTGAGCCTTGGTCTTCTTGTATCTTCAGCCGTTGCATTCCCAATATACGTTGATGTAGACATTATGAAATTCCCAATTTCTTGTATAATGGGTGGAAATAAAGTTTTCAAAGATGGGCGCTGAACCTTGGATAGGATGCCACGTATCTCGGCGTTGTTCGAACATACAAGGACTGATCTTTGATTTTCATTTATTCACGTTCACTCCAAGGGACAAAGTTCCATAAGTTTTGCTAATTTTGTTTTACATTGGTAAGATGATTATGCCATGACTTCTGAAGTGCTGACTCATGAATCATTATGTTGTTGGATGTAGTCCCGTCTCATTATTGAAATGTCATTCTGGTCATGCCCTTTCTTTAAGCAAATATATCCACATATTTATAAGTTAATGAAGTACTTTCCCCTTCAGTCTTAATTTTTTCATTTTGCTTCTTTTTGCTTACAGATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAGGTCATATTTTTTTCTGTACTGTATATCTTACAACTTCACATGGCTTGTCATTCTTTTAGAAATGTGTTTATATATGTAATGTATTGCTTAGATGGTGGTCTCCTTGTATGGACTTGTGCAGTCCCCTCCTCATGGGCTAGATTTTGAGGTTGAGTTAGGTCCAAGATTCATTTATTTACATGGTACCATAGCAGGACCCATCATACCCGATGTTGAGCCCCAAAATTAAATTGCCCATGCTCCAGCTGTCTGGTCTCTTTTTATGGATTTGGGCAATCCTCCACTCACGAGCTATCTTTTGAGGTTGAGTTAGGCCCAAGATCTATTTCTTTACAAGTTTAGACTCTGATATTTTTCTTGTTTCTTGTAAAATTTCTGATGAGTGCTTTGATCTCTACCAACTGCTTTTTTTTTTTCACTTTATCTAAACATACTTACTCTAGTTTGTTCTAATGGGCTAATGTACAGTACATTTTCAGATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</genome_strand>
        <mrna_strand>AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTAGGATGGAATCGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATGAGAACCATTTCATTAAAGCATTACGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M9199" ref_strand="+" ref_description="SGN-M9199 C2_At5g64630 [cosii_markers]">
      <seq>caaccaaaatcaccatttctctaaaccctattttcttcttcttctcttgcatttttccaaaatctcaaaaattagtaagaagagagatcaggaagcaacaaataaggatgaagggtggtacagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttggcctctggtgccgatggcggcgagctcatcatttggaagctacattcttcagatgacagcaaaacatggaaagtcctaaagacgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttaatttctggttctgttgataattcatgcatcgtatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatccattgtccaagtatactgcctcactcagttcagatagatcttgccggatttacagcaatagaccatctaaaacaaaaggagttgagaagttgaattttgtgtgtcaacatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="+" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="107215" stop="111882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107515" g_stop="107734" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107735" i_stop="109073" i_length="1339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109074" g_stop="109185" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="333" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109186" i_stop="110269" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110270" g_stop="110296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="360" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110297" i_stop="110376" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110377" g_stop="110449" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="433" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110450" i_stop="111220" i_length="771">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111221" g_stop="111324" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="537" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111325" i_stop="111408" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111409" g_stop="111582" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="711" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="+" ref_id="SGN-M9199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107515" e_stop="107734"/>
          <exon e_start="109074" e_stop="109185"/>
          <exon e_start="110270" e_stop="110296"/>
          <exon e_start="110377" e_stop="110449"/>
          <exon e_start="111221" e_stop="111324"/>
          <exon e_start="111409" e_stop="111582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAA-CAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</genome_strand>
        <mrna_strand>CAACCAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M9199-2" ref_strand="+" ref_description="SGN-M9199-2 C2_At5g64630-2 [cosii_markers]">
      <seq>gagagatcaggaagcaacaagaagaatgaagggtggtacagttcagatcaattggcacgacagcaagcctgttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgacatcaagatgtgggtgattaattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttagcctctggtgcagatggtggcgagctcatcatttggaagctacattcttcagatgacagcaaaacatggaaggtcctaaagacgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttgatttctggttctgttgataattcgtgcatcatatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatccattgtccaagtatactgcctcactcagttcagatagatcttgccggatttacagcaatagaccatctaaaacaaaaggagttgagaagttgaattttgtgtgtcaacatgtcattatgaaggttgaaccacaactgccggatgagtccaagtctactaaaaatcatctctttcttgatgagacattgccatctttcttccgaaggttatcttggtctcctgatggctcctttctgcttgtgcctgcaggttcttacaagtttacacctgcttcagaaccagcgaacactgcttatgtgttttctaggaaagatctcacaaggccagctttaatgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="+" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="107295" stop="112949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107595" g_stop="107734" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107735" i_stop="109073" i_length="1339">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109074" g_stop="109185" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="251" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109186" i_stop="110269" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110270" g_stop="110296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="278" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110297" i_stop="110376" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110377" g_stop="110449" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="351" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110450" i_stop="111220" i_length="771">
            <donor d_prob="0.757" d_score="0.98"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111221" g_stop="111324" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="455" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111325" i_stop="111408" i_length="84">
            <donor d_prob="0.932" d_score="0.94"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111409" g_stop="111620" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="667" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111621" i_stop="111708" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111709" g_stop="111805" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="764" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111806" i_stop="112560" i_length="755">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="112561" g_stop="112633" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="837" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="112634" i_stop="112749" i_length="116">
            <donor d_prob="0.145" d_score="0.94"/>
            <acceptor a_prob="0.748" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="112750" g_stop="112767" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="855" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="+" ref_id="SGN-M9199-2" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9199-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107595" e_stop="107734"/>
          <exon e_start="109074" e_stop="109185"/>
          <exon e_start="110270" e_stop="110296"/>
          <exon e_start="110377" e_stop="110449"/>
          <exon e_start="111221" e_stop="111324"/>
          <exon e_start="111409" e_stop="111620"/>
          <exon e_start="111709" e_stop="111805"/>
          <exon e_start="112561" e_stop="112633"/>
          <exon e_start="112750" e_stop="112767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCATTATGAAGGTTGAACCACAACTGCCGGATGAGTCCAAGGTCAAATATCATATCAGTTTCTCAATGTCTTCTATTTACAAGTGAATGTTAAATGCATAATAACTTTGGCGCTTCCAAATTCATGCAGTCTACTAAAAATCATCTCTTTCTTGATGAGACACTGCCATCTTTCTTCCGAAGGTTATCTTGGTCTCCTGATGGTTCCTTTCTGCTTGTGCCTGCAGGTACAACCTTGAAACTAAAAGTCCTAATTATGAGTCTGTGCATTTTGATTATTCTTTCTACCCGTGTCGGAATGTTCTCCTGCTACCTCCTGCACCCCCACCATTCCGAAAGAAAAAGACGAAGAAAACCATTCTCAAAGACAAAAAGAAAAGGAAAGCTCTATCAAGACTTCATGTGTTCTTTGCCTTAAAACATACCTCTTTGTTCTTGCAGTGACATGACATTGGTGTCAGTTCAGTCACCCTGTGAAATATCATCAACAGTTTAATTTTTCATTGAAGGAGTATTACGATATTTCTCTACTTTCTGAATAAGCCTATTGAAGCATCGGGACCTTCTTTTGCAGTCCAAATATAAAAGTAGTGCACGAAAATTTTCAGATTAAAATCATACCATAGCCCACTTTGTGAACTGTGTCTTGACATTTTGCAGCATCAGGTTAATTTCCACGACACCTGTTTTATAGTTCTCATTTAAGCTTTATCTTTGGACTCTCCATTTGCTTTTTTGGCAATTTACTGTTTTTGAAATGTTGAATTGTACTTGAGATAGAACTTCCAGAGAGAAACTTGAACTTCTTCATATTCTTCATGTGATAGTGCTAATGCGATAGATTATAGGCATCTGACCTGTATTCCTTTTTTTTTGTTTATTATTATTTTTATAATTATCATTTTTGAGGTAATGGGGAAAAAGGGAACTGGTAAAGTAAAGGTAGAAGGTTTGAGAATATAGACGTGTTTTGCTATTTCAGGTTGTTACAAGTTTACACCTGCTTCAGAACCAGCAAACACTGCTTATGTGTTTTCTAGGAATGATCTTACAAGGCAAGAATCTTATGTCTTTTTCGTACTGCTATATTTTTATTAAAGCGAATCCATTATATTCCCTCTAGCTCACAACAATCTGATACTTGCGCATCAACTTTGTTGGATTTTGACAGGCCAGCTTTAATGCTCCC</genome_strand>
        <mrna_strand>GAGAGATCAGGAAGCAAC-AAGAAGAATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGCAAGCCTGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGACATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTAATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTAGCCTCTGGTGCAGATG................................................................................GTGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAGGTCCTAAAGACGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTGATTTCTGGTTCTGTTGATAATTCGTGCATCATATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCATTATGAAGGTTGAACCACAACTGCCGGATGAGTCCAAG........................................................................................TCTACTAAAAATCATCTCTTTCTTGATGAGACATTGCCATCTTTCTTCCGAAGGTTATCTTGGTCTCCTGATGGCTCCTTTCTGCTTGTGCCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACAAGTTTACACCTGCTTCAGAACCAGCGAACACTGCTTATGTGTTTTCTAGGAAAGATCTCACAAG....................................................................................................................GCCAGCTTTAATGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M2961" ref_strand="+" ref_description="SGN-M2961 cTOA-5-G7 [est_clones]">
      <seq>agagatcaggaagcaacaaataaggatgaagggtggtacagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttggcctctggtgccgatggcggcgagctcatcatttggaagctacattcttcagatgacagcaaaacatggaaagtcctaaagacgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttaatttctggttctgttgataattcatgcatcgtatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatccattgtccaagtatactgcctcactcagttcagatagatcttgccggatttacagcaatagaccatctaaaacaaaaggagttgagaagttgaattttgtgtgtcaacatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="+" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="107296" stop="111882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107596" g_stop="107734" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107735" i_stop="109073" i_length="1339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109074" g_stop="109185" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="251" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109186" i_stop="110269" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110270" g_stop="110296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="278" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110297" i_stop="110376" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110377" g_stop="110449" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="351" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110450" i_stop="111220" i_length="771">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111221" g_stop="111324" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="455" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111325" i_stop="111408" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111409" g_stop="111582" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="629" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="+" ref_id="SGN-M2961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107596" e_stop="107734"/>
          <exon e_start="109074" e_stop="109185"/>
          <exon e_start="110270" e_stop="110296"/>
          <exon e_start="110377" e_stop="110449"/>
          <exon e_start="111221" e_stop="111324"/>
          <exon e_start="111409" e_stop="111582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</genome_strand>
        <mrna_strand>AGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M803-2" ref_strand="+" ref_description="SGN-M803-2 SSR130-2 [est_by_read]">
      <seq>ctatttggcctagttttcctcttcaaaaccctcaacaccatcaccttccctcctcctcaacccaacaacaacaacaacaacaagaagaagtagtagttgtcccttttgatcatgtgttaaacaaccatgttcaaaccctaatagaggatcaagaacacgatgatcaagacgaagatgaagaggaagaagaagagctaggagccatgaaagaaatgatgttcaaaattgcatctatgcaaccagtagacattgatccatccactatacgaaaacctaaaaggcgtaacgtacgtataagcaatgatccacaaagcgtagcagccaggctacgccgcgaaaggataagtgaaaaaatcagaatcttgcaaagattagtccctggtggaacaaaaatggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="-" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="123708" stop="122708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123408" g_stop="123008" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="-" ref_id="SGN-M803-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M803-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123408" e_stop="123008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</genome_strand>
        <mrna_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-xT8mOr/sgn_marker_seqs" ref_id="SGN-M803" ref_strand="+" ref_description="SGN-M803 SSR130 [est_by_read_no_qc_info]">
      <seq>tgtcctatttggcctagttttcctcttcaaaaccctcaacaccatcaccttccctcctcctcaacccaacaacaacaacaacaacaagaagaagtagtagttgtcccttttgatcatgtgttaaacaaccatgttcaaaccctaatagaggatcaagaacacgatgatcaagacgaagatgaagaggaagaagaagagctaggagccatgaaagaaatgatgttcaaaattgcatctatgcaaccagtagacattgatccatccactatacgaaaacctaaaaggcgtaacgtacgtataagcaatgatccacaaagcgtagcagccaggctacgccgcgaaaggataagtgaaaaaatcagaatcttgcaaagattagtccctggtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-ZLfRn/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0054I23.1" temp_strand="-" temp_description="C11HBa0054I23.1  AC212431.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0054I23 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="123709" stop="122721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123412" g_stop="123021" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.1" gen_strand="-" ref_id="SGN-M803" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123412" e_stop="123021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAAC</genome_strand>
        <mrna_strand>TGTCCTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29132" PGL_stop="29584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29132" e_stop="29584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29132" e_stop="29584" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29132" stop="29584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M221-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTACTTGTGTTAACCGTGTCGAGCTCTTGGTTGGTTAAAGTAGATGAGATGTTACTTCTTGCCTTTGATCGATGACATAGTTGTTTTGTTATGGTTTAATTTTGATTTCTAAT</gDNA_template>
            <first_frame> C  L  C  S  W  W  R  R  V  K  M  H  W  L  R  G  *  L  I  G  R  L  R  L  K  R  L  C  *  *  E  L  Q  R  L  E  R  K  *  G  I  W  G  S  L  I  M  W  *  *  I  E  K  E  S  W  R  I  L  L  S  *  W  S  L  L  L  M  L  R  K  L  K  *  G  K  E  Q  *  Q  F  R  E  S  V  F  Q  F  F  D  L  F  L  I  K  L  S  *  Y  S  *  C  C  L  V  F  N  L  C  N  I  V  F  P  T  C  V  N  R  V  E  L  L  V  G  *  S  R  *  D  V  T  S  C  L  *  S  M  T  *  L  F  C  Y  G  L  I  L  I  S  N </first_frame>
            <second_frame>  V  C  V  L  G  G  G  E  *  R  C  I  G  *  E  V  D  *  *  E  D  *  D  *  R  D  F  A  S  E  N  C  N  V  S  R  G  S  E  A  Y  G  G  V  *  L  C  G  S  E  *  R  R  R  V  G  E  F  C  *  V  N  G  V  Y  Y  *  C  *  E  S  *  S  E  A  K  N  S  D  N  L  E  S  L  F  F  S  F  L  I  C  F  *  L  S  *  A  D  T  L  N  V  V  L  Y  S  I  Y  A  T  L  F  F  L  L  V  L  T  V  S  S  S  W  L  V  K  V  D  E  M  L  L  L  A  F  D  R  *  H  S  C  F  V  M  V  *  F  *  F  L   </second_frame>
            <third_frame>   F  V  F  L  V  A  E  S  E  D  A  L  V  K  R  L  I  D  R  K  T  E  T  K  E  T  L  L  V  R  I  A  T  S  R  E  E  V  R  H  M  G  E  F  D  Y  V  V  V  N  R  E  G  E  L  E  N  S  V  K  L  M  E  S  I  I  D  A  E  K  A  K  V  R  Q  R  T  V  T  I  *  R  V  C  F  S  V  F  *  S  V  F  D  *  V  E  L  I  L  L  M  L  S  C  I  Q  F  M  Q  H  C  F  S  Y  L  C  *  P  C  R  A  L  G  W  L  K  *  M  R  C  Y  F  L  P  L  I  D  D  I  V  V  L  L  W  F  N  F  D  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29134" stop="29376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFLVAESEDALVKRLIDRKTETKETLLVRIATSREEVRHMGEFDYVVVNREGELENSVKLMESIIDAEKAKVRQRTVTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30425" PGL_stop="29914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30425" e_stop="29914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30425" e_stop="29914" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30425" stop="29932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M355-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30420" stop="29914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M355-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30420" stop="29937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M221-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGTTACTCAACTAGCAGCAAACTAGATATTTTATTATGTATCTATTTTCTAAAATTTGTATAATGTTATCTACTTCTACTGGCACCCATGCTACAAGAAGCTTAAATGGTGCACTTTATTGAATACAACAAAGATTTCAAGCCATGCTGAGAAGACTACTGAAAGAGAGAGTCTCATACATACACTGAATGATGATATGAATTATCTTTCTTTTCTAACAATTGCATGAAAAGAGCAGTTAAATCTTAAATGAGTTGTTCTAGTTCAGATGAATAGACAGGGCAAGAGGATCATCTTCTATCTTTATGCAGAACAGTGATTGATAGGCTTAACAGAATTGGCAACACACAACATACTACTCAAAATGAACATAAACAGATACATCAAGTTCCAGAGGGAGCACAATGGAACAGAGATGCAAACTGACGACACTATTAACATAGGCAAGAATTGCCTTTCGGTTCAGACAATATCTCAAACGAGATGGTAATATGCTTTGCTGAATAAGAC</gDNA_template>
            <first_frame> Q  V  T  Q  L  A  A  N  *  I  F  Y  Y  V  S  I  F  *  N  L  Y  N  V  I  Y  F  Y  W  H  P  C  Y  K  K  L  K  W  C  T  L  L  N  T  T  K  I  S  S  H  A  E  K  T  T  E  R  E  S  L  I  H  T  L  N  D  D  M  N  Y  L  S  F  L  T  I  A  *  K  E  Q  L  N  L  K  *  V  V  L  V  Q  M  N  R  Q  G  K  R  I  I  F  Y  L  Y  A  E  Q  *  L  I  G  L  T  E  L  A  T  H  N  I  L  L  K  M  N  I  N  R  Y  I  K  F  Q  R  E  H  N  G  T  E  M  Q  T  D  D  T  I  N  I  G  K  N  C  L  S  V  Q  T  I  S  Q  T  R  W  *  Y  A  L  L  N  K   </first_frame>
            <second_frame>  R  L  L  N  *  Q  Q  T  R  Y  F  I  M  Y  L  F  S  K  I  C  I  M  L  S  T  S  T  G  T  H  A  T  R  S  L  N  G  A  L  Y  *  I  Q  Q  R  F  Q  A  M  L  R  R  L  L  K  E  R  V  S  Y  I  H  *  M  M  I  *  I  I  F  L  F  *  Q  L  H  E  K  S  S  *  I  L  N  E  L  F  *  F  R  *  I  D  R  A  R  G  S  S  S  I  F  M  Q  N  S  D  *  *  A  *  Q  N  W  Q  H  T  T  Y  Y  S  K  *  T  *  T  D  T  S  S  S  R  G  S  T  M  E  Q  R  C  K  L  T  T  L  L  T  *  A  R  I  A  F  R  F  R  Q  Y  L  K  R  D  G  N  M  L  C  *  I  R  </second_frame>
            <third_frame>   G  Y  S  T  S  S  K  L  D  I  L  L  C  I  Y  F  L  K  F  V  *  C  Y  L  L  L  L  A  P  M  L  Q  E  A  *  M  V  H  F  I  E  Y  N  K  D  F  K  P  C  *  E  D  Y  *  K  R  E  S  H  T  Y  T  E  *  *  Y  E  L  S  F  F  S  N  N  C  M  K  R  A  V  K  S  *  M  S  C  S  S  S  D  E  *  T  G  Q  E  D  H  L  L  S  L  C  R  T  V  I  D  R  L  N  R  I  G  N  T  Q  H  T  T  Q  N  E  H  K  Q  I  H  Q  V  P  E  G  A  Q  W  N  R  D  A  N  *  R  H  Y  *  H  R  Q  E  L  P  F  G  S  D  N  I  S  N  E  M  V  I  C  F  A  E  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0054I23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="41552" PGL_stop="45374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41552" e_stop="41630"/>
            <exon e_start="42031" e_stop="42098"/>
            <exon e_start="44673" e_stop="44761"/>
            <exon e_start="45241" e_stop="45374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.992" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41552" e_stop="41630" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.471">
            <gDNA_intron_boundary i_start="41631" i_stop="42030" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="42031" e_stop="42098" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42099" i_stop="44672" i_length="2574"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44673" e_stop="44761" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.648">
            <gDNA_intron_boundary i_start="44762" i_stop="45240" i_length="479"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="45241" e_stop="45374" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41552" stop="41630"/>
              <exon start="42031" stop="42098"/>
              <exon start="44673" stop="44761"/>
              <exon start="45241" stop="45374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG : CTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT : ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG : ATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</gDNA_template>
            <first_frame> N  E  D  N  S  V  W  E  A  S  K  S  H  G  L  H  P  C  I  K  P  T  A  K  Y  K   : A  A  L  G  W  K  R  Y  L  T  V  K  S  N  G  G  L  N  Q  M  R  T  G  :  I  A  D  M  V  A  V  A  H  V  M  N  A  T  L  V  I  P  Q  L  D  K  R  S  F  W  Q  D  S  R :   Y  I  *  *  E  P  F  H  Q  S  I  K  R  R  P  H  D  Y  *  R  A  S  *  R  N  R  I  F  T  S  S  *  E  A  L  H  V  M  V  R  S  G  L  L  </first_frame>
            <second_frame>  M  K  I  I  L  F  G  K  L  Q  R  A  M  V  Y  I  H  A  L  S  Q  L  Q  N  T  K  :  L  L  *  G  G  N  A  T  *  L  *  K  V  M  V  D  *  I  K  *  G  R  V :   *  L  T  W  W  Q  W  H  M  *  *  M  Q  L  W  *  F  L  N  W  T  S  V  H  S  G  K  I  Q   : D  I  F  D  E  N  H  F  I  K  A  L  R  G  D  L  M  I  I  K  E  L  P  K  E  I  E  S  L  P  R  A  R  K  H  F  T  S  W  S  G  V  G  Y  Y </second_frame>
            <third_frame>   *  R  *  F  C  L  G  S  F  K  E  P  W  F  T  S  M  H  *  A  N  C  K  I  Q  S :   C  S  R  V  E  T  L  L  D  C  K  K  *  W  W  I  K  S  N  E  D  G   : Y  S  *  H  G  G  S  G  T  C  D  E  C  N  F  G  N  S  S  I  G  Q  A  F  I  L  A  R  F  K  :  I  Y  L  M  R  T  I  S  S  K  H  *  E  E  T  S  *  L  L  K  S  F  L  K  K  *  N  L  Y  L  E  L  G  S  T  S  R  H  G  Q  E  W  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41552" stop="41630"/>
                    <exon start="42031" stop="42098"/>
                    <exon start="44673" stop="44761"/>
                    <exon start="45241" stop="45250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEDNSVWEASKSHGLHPCIKPTAKYKAALGWKRYLTVKSNGGLNQMRTGIADMVAVAHVMNATLVIPQLDKRSFWQDSRYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="107515" PGL_stop="112767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107515" e_stop="107734"/>
            <exon e_start="109074" e_stop="109185"/>
            <exon e_start="110270" e_stop="110296"/>
            <exon e_start="110377" e_stop="110449"/>
            <exon e_start="111221" e_stop="111324"/>
            <exon e_start="111409" e_stop="111620"/>
            <exon e_start="111709" e_stop="111805"/>
            <exon e_start="112561" e_stop="112633"/>
            <exon e_start="112750" e_stop="112767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.991"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.230" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.946" e_score="0.979"/>
          <exon-intron don_prob="0.145" acc_prob="0.748" e_score="0.945"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="107515" e_stop="107734" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="107735" i_stop="109073" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109074" e_stop="109185" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="109186" i_stop="110269" i_length="1084"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110270" e_stop="110296" e_length="27"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.882">
            <gDNA_intron_boundary i_start="110297" i_stop="110376" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110377" e_stop="110449" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.757" acc_prob="0.486">
            <gDNA_intron_boundary i_start="110450" i_stop="111220" i_length="771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111221" e_stop="111324" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.230">
            <gDNA_intron_boundary i_start="111325" i_stop="111408" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111409" e_stop="111620" e_length="212"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.733">
            <gDNA_intron_boundary i_start="111621" i_stop="111708" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="111709" e_stop="111805" e_length="97"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.946">
            <gDNA_intron_boundary i_start="111806" i_stop="112560" i_length="755"/>
          </intron>
          <exon e_serial="8" e_score="0.945">
            <gDNA_exon_boundary e_start="112561" e_stop="112633" e_length="73"/>
          </exon>
          <intron i_serial="8" don_prob="0.145" acc_prob="0.748">
            <gDNA_intron_boundary i_start="112634" i_stop="112749" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="112750" e_stop="112767" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107515" stop="107734"/>
              <exon start="109074" stop="109185"/>
              <exon start="110270" stop="110296"/>
              <exon start="110377" stop="110449"/>
              <exon start="111221" stop="111324"/>
              <exon start="111409" stop="111582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107595" stop="107734"/>
              <exon start="109074" stop="109185"/>
              <exon start="110270" stop="110296"/>
              <exon start="110377" stop="110449"/>
              <exon start="111221" stop="111324"/>
              <exon start="111409" stop="111620"/>
              <exon start="111709" stop="111805"/>
              <exon start="112561" stop="112633"/>
              <exon start="112750" stop="112767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9199-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107596" stop="107734"/>
              <exon start="109074" stop="109185"/>
              <exon start="110270" stop="110296"/>
              <exon start="110377" stop="110449"/>
              <exon start="111221" stop="111324"/>
              <exon start="111409" stop="111582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG : ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG : GAGAGCATTTGGCCTCTGGTGCCGATG : GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC : ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG : GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCATTATGAAGGTTGAACCACAACTGCCGGATGAGTCCAAG : TCTACTAAAAATCATCTCTTTCTTGATGAGACACTGCCATCTTTCTTCCGAAGGTTATCTTGGTCTCCTGATGGTTCCTTTCTGCTTGTGCCTGCAG : GTTGTTACAAGTTTACACCTGCTTCAGAACCAGCAAACACTGCTTATGTGTTTTCTAGGAATGATCTTACAAG : GCCAGCTTTAATGCTCCC</gDNA_template>
            <first_frame> Q  Q  N  H  H  F  S  K  P  Y  F  L  L  L  L  L  H  F  S  K  I  S  K  I  S  K  K  R  D  Q  E  A  T  N  K  D  E  G  W  Y  S  S  D  Q  L  A  R  Q  *  A  S  F  V  P  *  F  S  P  P  H  R  R  Y  C  Y  W  W  R  R  L  *  Y  Q   : D  V  G  D  *  F  *  R  K  *  K  E  S  A  F  S  Y  I  P  G  *  P  F  L  P  *  W  C  C  E  C  S  S  V  L  P  F  R :   R  A  F  G  L  W  C  R  W :   R  R  A  H  H  L  E  A  T  F  F  R  *  Q  Q  N  M  E  S  P  K  D  V  I  :  I  S  P  E  G  C  I  G  L  A  V  V  C  *  W  F  F  F  N  F  W  F  C  *  *  F  M  H  R  M  G  C  Q  Q  R :   F  C  S  S  D  F  G  C  S  F  A  L  C  A  R  C  G  M  G  S  I  V  Q  V  Y  C  L  T  Q  F  R  *  I  L  P  D  L  Q  Q  *  T  I  *  N  K  R  S  *  E  V  E  F  C  V  S  T  C  H  Y  E  G  *  T  T  T  A  G  *  V  Q   : V  Y  *  K  S  S  L  S  *  *  D  T  A  I  F  L  P  K  V  I  L  V  S  *  W  F  L  S  A  C  A  C  R :   L  L  Q  V  Y  T  C  F  R  T  S  K  H  C  L  C  V  F  *  E  *  S  Y  K  :  A  S  F  N  A  P </first_frame>
            <second_frame>  N  K  I  T  I  S  L  N  P  I  F  F  F  F  S  C  I  F  P  K  S  Q  K  L  V  R  R  E  I  R  K  Q  Q  I  R  M  K  G  G  T  V  Q  I  N  W  H  D  S  K  P  V  L  C  L  D  F  H  H  L  T  G  V  I  A  T  G  G  A  D  Y  D  I  K  :  M  W  V  I  D  S  E  E  N  E  K  K  A  P  S  V  T  Y  Q  A  S  L  S  Y  H  S  G  A  V  N  A  L  R  F  S  P  S   : G  E  H  L  A  S  G  A  D   : G  G  E  L  I  I  W  K  L  H  S  S  D  D  S  K  T  W  K  V  L  K  T  L  S :   F  H  R  K  D  V  L  D  L  Q  W  S  A  D  G  S  F  L  I  S  G  S  V  D  N  S  C  I  V  W  D  V  N  K   : G  S  V  H  Q  I  L  D  A  H  L  H  Y  V  Q  G  V  A  W  D  P  L  S  K  Y  T  A  S  L  S  S  D  R  S  C  R  I  Y  S  N  R  P  S  K  T  K  G  V  E  K  L  N  F  V  C  Q  H  V  I  M  K  V  E  P  Q  L  P  D  E  S  K  :  S  T  K  N  H  L  F  L  D  E  T  L  P  S  F  F  R  R  L  S  W  S  P  D  G  S  F  L  L  V  P  A   : G  C  Y  K  F  T  P  A  S  E  P  A  N  T  A  Y  V  F  S  R  N  D  L  T  R :   P  A  L  M  L   </second_frame>
            <third_frame>   T  K  S  P  F  L  *  T  L  F  S  S  S  S  L  A  F  F  Q  N  L  K  N  *  *  E  E  R  S  G  S  N  K  *  G  *  R  V  V  Q  F  R  S  I  G  T  T  V  S  Q  F  C  A  L  I  F  T  T  S  P  A  L  L  L  L  V  A  P  T  M  I  S  R :   C  G  *  L  I  L  K  K  M  K  R  K  R  L  Q  L  H  T  R  L  A  F  L  T  I  V  V  L  *  M  L  F  G  S  P  L  Q  :  E  S  I  W  P  L  V  P  M  :  A  A  S  S  S  F  G  S  Y  I  L  Q  M  T  A  K  H  G  K  S  *  R  R  Y   : H  F  T  G  R  M  Y  W  T  C  S  G  L  L  M  V  L  F  *  F  L  V  L  L  I  I  H  A  S  Y  G  M  S  T  K  :  V  L  F  I  R  F  W  M  L  I  C  T  M  C  K  V  W  H  G  I  H  C  P  S  I  L  P  H  S  V  Q  I  D  L  A  G  F  T  A  I  D  H  L  K  Q  K  E  L  R  S  *  I  L  C  V  N  M  S  L  *  R  L  N  H  N  C  R  M  S  P  S :   L  L  K  I  I  S  F  L  M  R  H  C  H  L  S  S  E  G  Y  L  G  L  L  M  V  P  F  C  L  C  L  Q  :  V  V  T  S  L  H  L  L  Q  N  Q  Q  T  L  L  M  C  F  L  G  M  I  L  Q   : G  Q  L  *  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107516" stop="107734"/>
                    <exon start="109074" stop="109185"/>
                    <exon start="110270" stop="110296"/>
                    <exon start="110377" stop="110449"/>
                    <exon start="111221" stop="111324"/>
                    <exon start="111409" stop="111620"/>
                    <exon start="111709" stop="111805"/>
                    <exon start="112561" stop="112633"/>
                    <exon start="112750" stop="112765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKITISLNPIFFFFSCIFPKSQKLVRREIRKQQIRMKGGTVQINWHDSKPVLCLDFHHLTGVIATGGADYDIKMWVIDSEENEKKAPSVTYQASLSYHSGAVNALRFSPSGEHLASGADGGELIIWKLHSSDDSKTWKVLKTLSFHRKDVLDLQWSADGSFLISGSVDNSCIVWDVNKGSVHQILDAHLHYVQGVAWDPLSKYTASLSSDRSCRIYSNRPSKTKGVEKLNFVCQHVIMKVEPQLPDESKSTKNHLFLDETLPSFFRRLSWSPDGSFLLVPAGCYKFTPASEPANTAYVFSRNDLTRPALML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="123412" PGL_stop="123008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123412" e_stop="123008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123412" e_stop="123008" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123412" stop="123021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123408" stop="123008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M803-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</gDNA_template>
            <first_frame> N  P  I  W  P  S  F  P  L  Q  N  P  Q  H  H  H  L  P  S  S  S  T  Q  Q  Q  Q  Q  Q  Q  E  E  V  V  V  V  P  F  D  H  V  L  N  N  H  V  Q  T  L  I  E  D  Q  E  H  D  D  Q  D  E  D  E  E  E  E  E  E  L  G  A  M  K  E  M  M  F  K  I  A  S  M  Q  P  V  D  I  D  P  S  T  I  R  K  P  K  R  R  N  V  R  I  S  N  D  P  Q  S  V  A  A  R  L  R  R  E  R  I  S  E  K  I  R  I  L  Q  R  L  V  P  G  G  T  K  M  D  T </first_frame>
            <second_frame>  T  L  F  G  L  V  F  L  F  K  T  L  N  T  I  T  F  P  P  P  Q  P  N  N  N  N  N  N  K  K  K  *  *  L  S  L  L  I  M  C  *  T  T  M  F  K  P  *  *  R  I  K  N  T  M  I  K  T  K  M  K  R  K  K  K  S  *  E  P  *  K  K  *  C  S  K  L  H  L  C  N  Q  *  T  L  I  H  P  L  Y  E  N  L  K  G  V  T  Y  V  *  A  M  I  H  K  A  *  Q  P  G  Y  A  A  K  G  *  V  K  K  S  E  S  C  K  D  *  S  L  V  E  Q  K  W  T   </second_frame>
            <third_frame>   P  Y  L  A  *  F  S  S  S  K  P  S  T  P  S  P  S  L  L  L  N  P  T  T  T  T  T  T  R  R  S  S  S  C  P  F  *  S  C  V  K  Q  P  C  S  N  P  N  R  G  S  R  T  R  *  S  R  R  R  *  R  G  R  R  R  A  R  S  H  E  R  N  D  V  Q  N  C  I  Y  A  T  S  R  H  *  S  I  H  Y  T  K  T  *  K  A  *  R  T  Y  K  Q  *  S  T  K  R  S  S  Q  A  T  P  R  K  D  K  *  K  N  Q  N  L  A  K  I  S  P  W  W  N  K  N  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123412" stop="123008"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPIWPSFPLQNPQHHHLPSSSTQQQQQQQEEVVVVPFDHVLNNHVQTLIEDQEHDDQDEDEEEEEELGAMKEMMFKIASMQPVDIDPSTIRKPKRRNVRISNDPQSVAARLRRERISEKIRILQRLVPGGTKMDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 20848 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2084 bytes was the average size of a spliced alignment
$ 10584 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2116 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 20:49:40
-->
