<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:42:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231791" ref_strand="+" ref_description="SGN-E231791 [cLED-7-C3]">
      <seq>gaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctctttctgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacatggcttgagatatttgtgcttctaagttgtcaatgacaaacgcgacatgctgtccttgcagttgatttgccttatcatcgttacagatcctctggcgtcattcaacttaatagaagaaagttctgtaattgtaaacttcttccatatcaccggtgcagctacgtgctgctacttttcacattgtctgcaaaattctttgttatacagtagatgtattcgagatatcttagataaaaggttctcaatgttgtgttaggagaggaagttaattgtaaccccatatggtctgttgtgttctgggaatagcccaactggataattgcaggagatgcttataacccctttttttactatttgaaatcttttgttagtttcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="8081" stop="4509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7781" g_stop="7734" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6283" g_stop="6056" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="276" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5152" g_stop="4807" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="623" r_length="347" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E231791" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7781" e_stop="7734"/>
          <exon e_start="6283" e_stop="6056"/>
          <exon e_start="5152" e_stop="4807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCC-TTTTTTACTATTTGAAATCTTTTGTTAGTTTCTTATATC</genome_strand>
        <mrna_strand>GAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCTTATAACCCCTTTTTTTACTATTTGAAATCTTTTGTTAGTTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282139" ref_strand="+" ref_description="SGN-E282139 [cLES-4-C16]">
      <seq>tgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacatggcttgagatatttgtgcttctaagttgtcaatgacaaacgcgacatgctgtccttgcagttgatttgccttatcatcgttacagatcctctggcgtcattcaacttaatagaagaaagttctgtaattgtaaacttcttccatatcaccggtgcagctacgtgctgctacttttcacattgtctgcaaaattctttgttatacagtagatgtattcgagatatcttagataaaaggttctcaatgttgtgttaggagaggaagttaattgtaaccccatatggtctgttgtgttctgggaatagcccaactggataattgcaagagatgcatataaccccttttttactatttgaaatcttttgttagtttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="6563" stop="4509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6263" g_stop="6056" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="4823" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="538" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="563"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E282139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6263" e_stop="6056"/>
          <exon e_start="5152" e_stop="4823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAAATCTTTT</genome_strand>
        <mrna_strand>TGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAAGAGATGCATATAACCCCTTTTTTACTATTTGAAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745287" ref_strand="+" ref_description="SGN-E745287 [GI|47105791]">
      <seq>gaagagaaaagcgccactacacaaaactgcaaaaaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaacccctaccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaagaactgtgagcccgaatttcttatttctactcctgaaagacttcaagaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctctttctgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacatggcttgagatatttgtgcttctaagttgtcaatgacaaacgcgacatgctgtccttgcagttgatttgccttatcatcgttacagatcctctggcgtcattcaacttaatagaagaaagttctgtaattgtaaacttcttccatatcaccggtgcagctacgtgctgctacttttcacattgtctgcaaaattctttgttatacagtagatgtattcgagatatcttagataaaaggttctcaatgttgtgttaggagaggaagttaattgtaaccccatatggtctgttgtgttctgggaatagcccaactggataattgcaggagatgcatataaccccttttttactattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10455" stop="4529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10155" g_stop="9936" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="700" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="789" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="889" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6283" g_stop="6056" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="1117" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5152" g_stop="4830" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1118" r_stop="1440" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1441" polyA_stop="1455"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E745287" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1440</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10155" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6056"/>
          <exon e_start="5152" e_stop="4830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGCGCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</genome_strand>
        <mrna_strand>GAAGAGAAAAGCGCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213542" ref_strand="-" ref_description="SGN-E213542 [cLEC-71-K14]">
      <seq>aaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacatggcttgagatatttgtgcttctaagttgtcaatgacaaacgcgacatgctgtccttgcagttgatttgccttatcatcgttacagatcctctggcgtcattcaacttaatagaagaaagttctgtaattgtaaacttcttccatatcaccggtgcagctacgtgctgctacttttcacattgtctgcaaaattctttgttatacagtagatgtattcgagatatcttagataaaaggttttcaatgttgtgttaggagaggaagttaattgtaaccccatatggtctgttgtgttctgggaatagcccaactggataattgcaggagatgcatataaccccttttttactatttgaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="6512" stop="4529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6212" g_stop="6056" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5152" g_stop="4830" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="480" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="501"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E213542" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213542" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6212" e_stop="6056"/>
          <exon e_start="5152" e_stop="4830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</genome_strand>
        <mrna_strand>AAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTTTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455903" ref_strand="+" ref_description="SGN-E455903 [cSTS-27-N22]">
      <seq>caaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttattccttgttccctcccaagagaaagctgtcaaggtacggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaagaactgtgagcccgagtttcttatttctactcctgaaagacttcaagaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctcttactgagacaggttatgttgatgcggttgaatccattacaaaatctatttctggaaagccacaaatactggctttcagtgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgaaccagtaaatggtcataacatggcttgagatatttgtgcttctaagttgtcaaagacaaacggggcatgctgtccttgcagttgatttgccacagctctcttgcgaaagttgttcaaactcatcatcgttacagatcctctggcgtcattcaacttaatagaaggaagttctatagtagtaaacttcttccatatcacggtgctgcttcttttcacattcgtctgcaaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="9096" stop="4724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8796" g_stop="8677" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="209" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="309" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6283" g_stop="6056" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="537" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6055" i_stop="5697" i_length="359">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5696" g_stop="5673" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="560" r_length="23" r_score="0.500"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5672" i_stop="5306" i_length="367">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5305" g_stop="5301" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="565" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5300" i_stop="5153" i_length="148">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5152" g_stop="5026" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="691" r_length="126" r_score="0.780"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E455903" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8796" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6056"/>
          <exon e_start="5696" e_stop="5673"/>
          <exon e_start="5305" e_stop="5301"/>
          <exon e_start="5152" e_stop="5026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCT-TG-CAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTAC</genome_strand>
        <mrna_strand>CAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAGTTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTACTGAGACAGGTTATGTTGATGCGGTTGAATCCATTACAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAGTGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGAACCAGTAAATGGTCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................A-CAAACGGGGCATGCTGTCCTTG...............................................................................................................................................................................................................................................................................................................................................................................CAGTT....................................................................................................................................................-GATTTGCCACA-GCTCTCTTGCGAAAGTTGTTCAAACTCATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGGAAGTTCTATAGTAGTAAACTTCTTCCATATCA-CGGTGCTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613083" ref_strand="+" ref_description="SGN-E613083 [62853]">
      <seq>cccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttattccttgttccctcccaagagaaagctgtcaaggtgcggagaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccaaattcagggcctgaagaactgtgagcccgagtttcttatttctactcctgaaagacttcaagaactcctctcgcatggtgccatgaaagcttctgatgtttctttcctggtcatcgatggacctcttactgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcagtgattgctcaaattcttcatccaatttgtcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatggtcataacatggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="9113" stop="5785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8813" g_stop="8677" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="227" r_length="90" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="327" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6283" g_stop="6085" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="527" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E613083" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8813" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGA-AAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTT-TCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTT</genome_strand>
        <mrna_strand>CCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAGAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAAATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAGTTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCGCATGGTGCCATGAAAGCTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTACTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAGTGATTGCTCAAATTCTTCATCCAATTTGTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGGTCATAACATGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268972" ref_strand="+" ref_description="SGN-E268972 [cLEI-16-M17]">
      <seq>ttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaacccctaccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaagaactgtgagcccgaatttcttatttctactcctgaaagacttcaagaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctctttctgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="9291" stop="5790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8991" g_stop="8677" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="404" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6283" g_stop="6090" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="698" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E268972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8991" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACAT</genome_strand>
        <mrna_strand>TTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698696" ref_strand="+" ref_description="SGN-E698696 [FA07BC01]">
      <seq>ccgtaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaacccctaccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaaaaactgtgagcccgaatttcttatttctactcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10408" stop="7491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10108" g_stop="9936" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="653" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="742" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7833" g_stop="7791" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="785" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E698696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10108" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAA</genome_strand>
        <mrna_strand>CCGTAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAAAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317102" ref_strand="+" ref_description="SGN-E317102 [cTOA-27-L13]">
      <seq>aaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaacccctaccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10370" stop="7882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10070" g_stop="9936" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="615" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8182" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="686" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E317102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10070" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTAT</genome_strand>
        <mrna_strand>AAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486233" ref_strand="+" ref_description="SGN-E486233 [cSTE-21-D19]">
      <seq>tgaacaacagcagcagccagagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagatttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatgcatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatttcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10401" stop="7898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10106" g_stop="9936" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="649" r_length="480" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8198" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="704" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E486233" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10106" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGC</genome_strand>
        <mrna_strand>TGAACAACAGCAGCAGCCAGAGCA--AGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGATTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATGCATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATTTCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558320" ref_strand="+" ref_description="SGN-E558320 [17642]">
      <seq>ctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgacgaaaaagaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatacatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10378" stop="7921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10078" g_stop="9936" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="623" r_length="480" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8221" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="655" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E558320" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10078" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCT</genome_strand>
        <mrna_strand>CTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGTGACGAAAAAGAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443178" ref_strand="+" ref_description="SGN-E443178 [cSTA-36-H9]">
      <seq>gaacgaatggcggacggggcaacaacagcagcagccagagcatgctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcaaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatacatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagacggtctatcaattagcaaccccttcctttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10402" stop="8409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10101" g_stop="9936" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="187" r_length="167" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8708" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="636" r_length="449" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E443178" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10101" e_stop="9936"/>
          <exon e_start="9156" e_stop="8708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGCAGCAGCAGCAGCA-GCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATT</genome_strand>
        <mrna_strand>AACAACAGCAGCAGCCAGAGCATGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCAAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGACGGTCTATCAATTAGCAACCCCTTCCTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478189" ref_strand="+" ref_description="SGN-E478189 [cSTD-3-F15]">
      <seq>cacaaaactgcaaaaaccgcctctctcacttgaacaacagcagcagccagagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgaagaaaaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatacatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10436" stop="8409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10136" g_stop="9936" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8709" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="644" r_length="445" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E478189" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10136" e_stop="9936"/>
          <exon e_start="9156" e_stop="8709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTAT</genome_strand>
        <mrna_strand>CACAAAACTGCAAAAACCGCCTCTCTCACTTGAACAACAGCAGCAGCCAGAGCA--AGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGT---GAAGAAAAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458060" ref_strand="+" ref_description="SGN-E458060 [cPRO-4-F15]">
      <seq>cacaaaactgcaaaaaccgcctctctcacttgaacaacagcttcagccagagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagatttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatgcatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10436" stop="8459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10136" g_stop="9936" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8758" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="598" r_length="399" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E458060" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10136" e_stop="9936"/>
          <exon e_start="9156" e_stop="8758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATA</genome_strand>
        <mrna_strand>CACAAAACTGCAAAAACCGCCTCTCTCACTTGAACAACAGCTTCAGCCAGAGCA--AGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGATTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATGCATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399654" ref_strand="+" ref_description="SGN-E399654 [cSTC-2-A11]">
      <seq>cgcctctctcacttgaacaacagcagcagccagagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagatttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatgcatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10401" stop="8477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10119" g_stop="9936" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8777" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="562" r_length="380" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E399654" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10119" e_stop="9936"/>
          <exon e_start="9156" e_stop="8777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGC</genome_strand>
        <mrna_strand>CGCCTCTCTCACTTGAACAACAGCAGCAGCCAGAGCA--AGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGATTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATGCATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441529" ref_strand="+" ref_description="SGN-E441529 [cSTA-30-D16]">
      <seq>agagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcaaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatacatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10386" stop="8489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10086" g_stop="9936" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8789" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="519" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E441529" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10086" e_stop="9936"/>
          <exon e_start="9156" e_stop="8789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGC</genome_strand>
        <mrna_strand>AGAGCAAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCAAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206926" ref_strand="+" ref_description="SGN-E206926 [cLEC-33-E15]">
      <seq>aaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10422" stop="8496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10122" g_stop="9936" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8796" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="548" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E206926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10122" e_stop="9936"/>
          <exon e_start="9156" e_stop="8796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGC</genome_strand>
        <mrna_strand>AACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200853" ref_strand="+" ref_description="SGN-E200853 [cLEC-5-I7]">
      <seq>gccactacacaaaactgcaaaaaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10443" stop="8608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10143" g_stop="9936" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8908" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="457" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E200853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10143" e_stop="9936"/>
          <exon e_start="9156" e_stop="8908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGT</genome_strand>
        <mrna_strand>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577104" ref_strand="+" ref_description="SGN-E577104 [32812]">
      <seq>cagaagtaagttgctggtggatttgagtttgagatcattcttgaatatcccctttgatactcgagatggttgctgaatcttggtttcgtaatttctggaaaaattcgaaaaaacatgagtggtggtggtcatcaaaaggtgctagttggtgttctagcatttgaagttgcaagtttgatgtctaagctggttcatgtatggcagtctctaagtgataaacaagtggctagattgagggatgagataatgaactcggtcggtataaagaagcttatttcagatgatgattcgtatattgcaagattgatatgtactgagttggttgagaacttgggacatgtagcaattgctgtttctaggcttgcaaagaaatgtaatgatccgtttttgaagagttttgagcaagccttcaatgatttgctaaaagatggtgctgatccatacgtggtggcaactatcatggaggaagatggacaaaaaaatcaagaagatggaacggtttatttgtgattaacgcgaatttgtatcaagaaatggagaatctttctgatcttgaacagacattgaggagattgaagggaaatgatgatgcagatagcattactttggttgaatacgagaagaagcttgcgtggaagaagcaggaggtgaaagcaccttaaggatgtctctatttggaatagaacttatgattatattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="25641" stop="26937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25941" g_stop="26637" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E577104" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25941" e_stop="26637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAATTTGCTGGTGGATTTGAGTTTGAGATCGTTCTTGAATATACCCTTTGATACTAGAGATGGTTGCTGAATCTTGGTTTCGTAATTTCTGGAAAAATTCGAAAAAGCATGAG-GGTGGTGGTCATCAAAAGGTGCTAGTTGGTGTTCTAGCATTTGAAGTTGCAAGTTTGATGTCTAAGCTGGTTCATGTATGGCAGTCTCTAAGTGATAAACAAGTGGCTAGATTGAGGGATGAGATAATGAACTCGGTCGGTATAAAGAAGCTTATTTCGGATGATGATTCATATACTGCAAGATTGATATGTACTGAGTTGGTTGAGAACTTGGGACATGTAGCAACTGCTGTTTCTAGGCTTGCAAAGAAATGTAATGATCCGTTCTTGAAGAGTTTCGAGCAAGCCTTCAATGATTTGCTAAAAGTTGGTGCTGATCCATACG-GGTGGCAACTCTCATGGAAGAAGATGGACAAAAAAATCAAGAAGATGGAACGGTTTA-TTGTGATAAATGCGAATTTGTATCAAGAAATGGAGAATCTTTCTGATCTTGAACAGACATTGAGGAGATTGAAGGGAAATGATGATGCAGATAGTATTACCTTGGTTGAATACGAGAAGAAGCTTGCGTGGAAGAAGCAGGAGGTG-AAGCACCTTAAGGATGTCTCTATTTGGAATAGAACTTACGATTATATTGT</genome_strand>
        <mrna_strand>CAGAAGTAAGTTGCTGGTGGATTTGAGTTTGAGATCATTCTTGAATATCCCCTTTGATACTCGAGATGGTTGCTGAATCTTGGTTTCGTAATTTCTGGAAAAATTCGAAAAAACATGAGTGGTGGTGGTCATCAAAAGGTGCTAGTTGGTGTTCTAGCATTTGAAGTTGCAAGTTTGATGTCTAAGCTGGTTCATGTATGGCAGTCTCTAAGTGATAAACAAGTGGCTAGATTGAGGGATGAGATAATGAACTCGGTCGGTATAAAGAAGCTTATTTCAGATGATGATTCGTATATTGCAAGATTGATATGTACTGAGTTGGTTGAGAACTTGGGACATGTAGCAATTGCTGTTTCTAGGCTTGCAAAGAAATGTAATGATCCGTTTTTGAAGAGTTTTGAGCAAGCCTTCAATGATTTGCTAAAAGATGGTGCTGATCCATACGTGGTGGCAACTATCATGGAGGAAGATGGACAAAAAAATCAAGAAGATGGAACGGTTTATTTGTGATTAACGCGAATTTGTATCAAGAAATGGAGAATCTTTCTGATCTTGAACAGACATTGAGGAGATTGAAGGGAAATGATGATGCAGATAGCATTACTTTGGTTGAATACGAGAAGAAGCTTGCGTGGAAGAAGCAGGAGGTGAAAGCACCTTAAGGATGTCTCTATTTGGAATAGAACTTATGATTATATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575878" ref_strand="+" ref_description="SGN-E575878 [35571]">
      <seq>gggacatgtagcaattgctgtttctaggcttgcaaagaaatgtaatgatccgtttttgaagagttttgagcaagccttcaatgatttgctaaaagatggtgctgatccatacgggtggcaactatcatggaggaagatggacaaaaaaatcaagaagatggaacggtttattgtgattaacgcgaatttgtatcaagaaatggagaatctttctgatcttgaacagacattgaggagattgaagggaaatgatgatgcagatagcattactttggttgaatacgagaagaagcttgcgtggaagaagcaggaggtgaagcaccttaaggatgtctctatttggaatagaacttatgattatattgtccgtcttttggcgagatccttgttttctatatttagtaggatagggcatgtgtttggagttgatccggtcgtggatgagagggctaaagcatccagagatctagattctgatcaaatccatcggagccactcagttgcttatgctcagtcatctgttcacccatctgaaagtagtctgtctagattttcctcggaaccagtagaaagcatccttgccaaatctggaccaatttcgagcacaaaggaacattcacaattccttattgccggtcccttgaaaagttcaacatcaaacagcaaggcccgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="25972" stop="27243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26272" g_stop="26943" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E575878" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26272" e_stop="26943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACATGTAGCAACTGCTGTTTCTAGGCTTGCAAAGAAATGTAATGATCCGTTCTTGAAGAGTTTCGAGCAAGCCTTCAATGATTTGCTAAAAGTTGGTGCTGATCCATACGGGTGGCAACTCTCATGGAAGAAGATGGACAAAAAAATCAAGAAGATGGAACGGTTTATTGTGATAAATGCGAATTTGTATCAAGAAATGGAGAATCTTTCTGATCTTGAACAGACATTGAGGAGATTGAAGGGAAATGATGATGCAGATAGTATTACCTTGGTTGAATACGAGAAGAAGCTTGCGTGGAAGAAGCAGGAGGTGAAGCACCTTAAGGATGTCTCTATTTGGAATAGAACTTACGATTATATTGTCCGTCTTTTGGCGAGATCCTTGTTTTCTATATTTAGTAGGATAGGGCATGTGTTTGGAGTTGATCCCGTTGTGGATGAGAGGGCTAAAGCATCCAGAGATCTAGATTCTGATCAAATCCATCGGAGCTACTCAGTTGCTTATGCTCAGTCATCTGTTCACCCATCTGAAAGTAGTCTCTCTAGATTTTCTTCGGAACCAGTAGAAAGCATCCTTGCGAAATCTGGACCAATTTCGAGCAC-TAGGAACATTCACAGTT-CTTATT-CCGGTCCCTTGAAAAGTTCAACATC-AACAGCAA-GCCCGATTCC</genome_strand>
        <mrna_strand>GGGACATGTAGCAATTGCTGTTTCTAGGCTTGCAAAGAAATGTAATGATCCGTTTTTGAAGAGTTTTGAGCAAGCCTTCAATGATTTGCTAAAAGATGGTGCTGATCCATACGGGTGGCAACTATCATGGAGGAAGATGGACAAAAAAATCAAGAAGATGGAACGGTTTATTGTGATTAACGCGAATTTGTATCAAGAAATGGAGAATCTTTCTGATCTTGAACAGACATTGAGGAGATTGAAGGGAAATGATGATGCAGATAGCATTACTTTGGTTGAATACGAGAAGAAGCTTGCGTGGAAGAAGCAGGAGGTGAAGCACCTTAAGGATGTCTCTATTTGGAATAGAACTTATGATTATATTGTCCGTCTTTTGGCGAGATCCTTGTTTTCTATATTTAGTAGGATAGGGCATGTGTTTGGAGTTGATCCGGTCGTGGATGAGAGGGCTAAAGCATCCAGAGATCTAGATTCTGATCAAATCCATCGGAGCCACTCAGTTGCTTATGCTCAGTCATCTGTTCACCCATCTGAAAGTAGTCTGTCTAGATTTTCCTCGGAACCAGTAGAAAGCATCCTTGCCAAATCTGGACCAATTTCGAGCACAAAGGAACATTCACAATTCCTTATTGCCGGTCCCTTGAAAAGTTCAACATCAAACAGCAAGGCCCGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264942" ref_strand="+" ref_description="SGN-E264942 [cLEI-10-F21]">
      <seq>tatgctcagtcatctgttcacccatctgaaagtagtctctctagattttcttcggaaccagtagaaagcatccttgcgaaatctggaccaatttcgagcactaggaacattcacagttcttattccggtcccttgaaaagttcaacatcaacagcaagcccgattcctggaaggcattcttctgctggtttctattcgggtcctctggggaggtcaacaacaaaatctggtcctctccctctatttaataaatccggcatgaagtggtggaaatcccgtgatcgttcaggtaacctaaatggaaaaggctcaaatttaaaacatgctcgaccgacctctggaccgcttaaaggctgcatgatggttgggaatggtgctcctgtaagtaattgccatctagatccacacggatttcattcaggttttctaaatgcaacgaaaggagctggtgtagatggacttgctgatggctattcaacttgctcttatctaacaagttataatgcgaaaaaaaggctgttaaatgctcctccagaaactctcggggctgctgccttagcactgcattatgcaaatgtcattatcgtgactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="26477" stop="27670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26777" g_stop="27370" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E264942" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26777" e_stop="27370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTCAGTCATCTGTTCACCCATCTGAAAGTAGTCTCTCTAGATTTTCTTCGGAACCAGTAGAAAGCATCCTTGCGAAATCTGGACCAATTTCGAGCACTAGGAACATTCACAGTTCTTATTCCGGTCCCTTGAAAAGTTCAACATCAACAGCAAGCCCGATTCCTGGAAGGCATTCTTCTGCTGGTTTCTATTCGGGTCCTCTGGGGAGGTCAACAACAAAATCTGGTCCTCTCCCTCTATTTAATAAATCCGGCATGAAGTGGTGGAAATCCCGTGATCGTTCAGGTAACCTAAATGGAAAAGGCTCAAATTTAAAACATGCTCGACCGACCTCTGGACCGCTTAAAGGCTGCATGATGGTTGGGAATGGTTCTCCTGTAAGTAATTGCCATCTAGATCCACACGGATTTCATTCAGGTTTTCTAAATGCAACGAAAGGAGCTGGTGTAGATGGACTTGCTGATGGCTATTCAACTTGCTCTTATCTAACAAGTTATAATGCGAAAAAAAGGCTGTTAAATGCTCCTCCAGAAACTCTCGGGGCTGCTGCCTTAGCACTGCATTATGCAAATGTCATTATCGTGACTGAG</genome_strand>
        <mrna_strand>TATGCTCAGTCATCTGTTCACCCATCTGAAAGTAGTCTCTCTAGATTTTCTTCGGAACCAGTAGAAAGCATCCTTGCGAAATCTGGACCAATTTCGAGCACTAGGAACATTCACAGTTCTTATTCCGGTCCCTTGAAAAGTTCAACATCAACAGCAAGCCCGATTCCTGGAAGGCATTCTTCTGCTGGTTTCTATTCGGGTCCTCTGGGGAGGTCAACAACAAAATCTGGTCCTCTCCCTCTATTTAATAAATCCGGCATGAAGTGGTGGAAATCCCGTGATCGTTCAGGTAACCTAAATGGAAAAGGCTCAAATTTAAAACATGCTCGACCGACCTCTGGACCGCTTAAAGGCTGCATGATGGTTGGGAATGGTGCTCCTGTAAGTAATTGCCATCTAGATCCACACGGATTTCATTCAGGTTTTCTAAATGCAACGAAAGGAGCTGGTGTAGATGGACTTGCTGATGGCTATTCAACTTGCTCTTATCTAACAAGTTATAATGCGAAAAAAAGGCTGTTAAATGCTCCTCCAGAAACTCTCGGGGCTGCTGCCTTAGCACTGCATTATGCAAATGTCATTATCGTGACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584731" ref_strand="+" ref_description="SGN-E584731 [10558]">
      <seq>cctaaatggaaaaggctcaaattcgaaacatgctcgactgacctctggaccgcttaaaggctgcatgatggttgggaatggttctcctctaagtaattgccatctagatccacatgggtttcattccggttttctcaatgcaatgaaaggagctggtgtagatggacttgctgatggctattcaacttgctcttatctaacaagttataatgcgaaaaaaaggctgctaaacgctcctccaggaaactctcggggctgctgccttagcactgcattatgcaaatgtcattatcgtgactgagaaactagtggcatctcctcacttgatcggacatgatgcaagagaagacctgtacaacatgctaccggctagtttaagagcagccctcagggcgaaattaaagccatttgctaagagcttgacgtcatccgtttatgacacagttcttgctggagaatggaatgaagcaatgctggggatactagaatggcttgctcctcttgctcataacatgataagatggcagtctgagcggagtttcgagcatcagaacttcgtttctagaacaaatgttctgcttgtccaaaccctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="26770" stop="27964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27070" g_stop="27664" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E584731" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27070" e_stop="27664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATGGAAAAGGCTCAAATTTAAAACATGCTCGACCGACCTCTGGACCGCTTAAAGGCTGCATGATGGTTGGGAATGGTTCTCCTGTAAGTAATTGCCATCTAGATCCACACGGATTTCATTCAGGTTTTCTAAATGCAACGAAAGGAGCTGGTGTAGATGGACTTGCTGATGGCTATTCAACTTGCTCTTATCTAACAAGTTATAATGCGAAAAAAAGGCTGTTAAATGCTCCTCCA-GAAACTCTCGGGGCTGCTGCCTTAGCACTGCATTATGCAAATGTCATTATCGTGACTGAGAAACTAGTGGCATCTCCTCACTTGATCGGACATGATGCAAGAGAAGACCTGTACAACATGCTACCGGCTAGTTTAAGAGCAGCCCTCAGGGCGAAATTAAAACCATTTGCTAAGAGCTTGACGTCATCCGTTTATGACACAGTTCTTGCTGGAGAATGGAATGAAGCAATGCTGGGGATACTAGAATGGCTTGCTCCTCTTGCTCATAATATGATAAGATGGCAGTCCGAGCGGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTAT</genome_strand>
        <mrna_strand>CCTAAATGGAAAAGGCTCAAATTCGAAACATGCTCGACTGACCTCTGGACCGCTTAAAGGCTGCATGATGGTTGGGAATGGTTCTCCTCTAAGTAATTGCCATCTAGATCCACATGGGTTTCATTCCGGTTTTCTCAATGCAATGAAAGGAGCTGGTGTAGATGGACTTGCTGATGGCTATTCAACTTGCTCTTATCTAACAAGTTATAATGCGAAAAAAAGGCTGCTAAACGCTCCTCCAGGAAACTCTCGGGGCTGCTGCCTTAGCACTGCATTATGCAAATGTCATTATCGTGACTGAGAAACTAGTGGCATCTCCTCACTTGATCGGACATGATGCAAGAGAAGACCTGTACAACATGCTACCGGCTAGTTTAAGAGCAGCCCTCAGGGCGAAATTAAAGCCATTTGCTAAGAGCTTGACGTCATCCGTTTATGACACAGTTCTTGCTGGAGAATGGAATGAAGCAATGCTGGGGATACTAGAATGGCTTGCTCCTCTTGCTCATAACATGATAAGATGGCAGTCTGAGCGGAGTTTCGAGCATCAGAACTTCGTTTCTAGAACAAATGTTCTGCTTGTCCAAACCCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372136" ref_strand="+" ref_description="SGN-E372136 [TUS-30-D24]">
      <seq>ggagtttcgagcatcagaactttgtttccagaacaaatgtgctgctagtacaaaccctttattatgcaaatcaagaaaagacagaatcagcaatcacagagctgctcgttggtttgaactacatatggaggtatggcagggaagtgaatgctaaagcgatagaggaatgtgctagtgctagaatgatgtttaatgatgattacttggatgactgacaaacattttgatctttagtcagtgattttgggcttgaatgttttggagttgaggaactgttccacggcaaaatgcctctcttcagaagcaaagcacgagtcttctctgccaagttttttcaactgttgctgattcaagctactcagattccatgagattccttattcgtcaaaagggtgacgaatactgcagaaatgtaacacacttaaagcttctgaacattctttcaggtcagtaagccatgaccattttcctattttgccagcagaacttgggatcacatttgatgaatcggagtccacgctataaattctatatcttgttattttgttaaatgtatagaattagctgagattgttttttctagctttgtatatttacataacaaaggctttcttttagcatataagataatgaaagggttggtgcagtagtttgttcttgatgaacttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="27303" stop="28576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27603" g_stop="28276" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E372136" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27603" e_stop="28276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTATTATGCAAATCAAGAAAAGACAGAATCAGCAATCACAGAGCTGCTCGTTGGTTTGAACTACATATGGAGGTATGGCAGGGAAGTGAATGCTAAAGCGATAGAGGAATGTGCTAGTGCTAGAATGATGTTTAATGATGATTACTTGGATGACTGACAAACATTTTGATCTTTAGTCAGTGATTTTGGGCTTGAATGTTTTGGAGTTGAGGAACTGTTCCACGGCAAAATGCCTCTCTTCAGAAGCAAAGCACGAGTCTTCTCTGCCAAGTTTTTTCAACTGTTGCTGATTCAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTTGCCAGCAGAACTTGGGATCACATTTGATGAATCGGAGTCCACGCTATAAATTCTATATCTTGTTATTTTGTTAAATGTATAGAATTAGCTGAGATTGTTTTTTCTAGCTTTGTATATTTACATAACAAAGGCTTTCTTTTAGCATATAAGATAATGAAAGGTTTGGTGCAGTAGTTTGTTCTTGATGAACTTTTGGAG</genome_strand>
        <mrna_strand>GGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTATTATGCAAATCAAGAAAAGACAGAATCAGCAATCACAGAGCTGCTCGTTGGTTTGAACTACATATGGAGGTATGGCAGGGAAGTGAATGCTAAAGCGATAGAGGAATGTGCTAGTGCTAGAATGATGTTTAATGATGATTACTTGGATGACTGACAAACATTTTGATCTTTAGTCAGTGATTTTGGGCTTGAATGTTTTGGAGTTGAGGAACTGTTCCACGGCAAAATGCCTCTCTTCAGAAGCAAAGCACGAGTCTTCTCTGCCAAGTTTTTTCAACTGTTGCTGATTCAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTTGCCAGCAGAACTTGGGATCACATTTGATGAATCGGAGTCCACGCTATAAATTCTATATCTTGTTATTTTGTTAAATGTATAGAATTAGCTGAGATTGTTTTTTCTAGCTTTGTATATTTACATAACAAAGGCTTTCTTTTAGCATATAAGATAATGAAAGGGTTGGTGCAGTAGTTTGTTCTTGATGAACTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283148" ref_strand="+" ref_description="SGN-E283148 [cLER-17-E18]">
      <seq>ggagtttcgagcatcagaactttgtttccagaacaaatgtgctgctagtacaaaccctttattatgcaaatcaagaaaagacagaatcagcaatcacagagctgctcgttggtttgaactacatatggaggtatggcagggaagtgaatgctaaagcgatagaggaatgtgctagtgctagaatgatgtttaatgatgattacttggatgactgacaaacattttgatctttagtcagtgattttgggcttgaatgttttggagttgaggaactgttccacggcaaaatgcctctcttcagaagcaaagcacgagtcttctctgccaagttttttcaactgttgctgattcaagctactcagattccatgagattccttattcgtcaaaagggtgacgaatactgcagaaatgtaacacacttaaagcttctgaacattctttcaagtcagtaagccatgaccattttcctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="27303" stop="28378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27603" g_stop="28078" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E283148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27603" e_stop="28078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTATTATGCAAATCAAGAAAAGACAGAATCAGCAATCACAGAGCTGCTCGTTGGTTTGAACTACATATGGAGGTATGGCAGGGAAGTGAATGCTAAAGCGATAGAGGAATGTGCTAGTGCTAGAATGATGTTTAATGATGATTACTTGGATGACTGACAAACATTTTGATCTTTAGTCAGTGATTTTGGGCTTGAATGTTTTGGAGTTGAGGAACTGTTCCACGGCAAAATGCCTCTCTTCAGAAGCAAAGCACGAGTCTTCTCTGCCAAGTTTTTTCAACTGTTGCTGATTCAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTT</genome_strand>
        <mrna_strand>GGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTATTATGCAAATCAAGAAAAGACAGAATCAGCAATCACAGAGCTGCTCGTTGGTTTGAACTACATATGGAGGTATGGCAGGGAAGTGAATGCTAAAGCGATAGAGGAATGTGCTAGTGCTAGAATGATGTTTAATGATGATTACTTGGATGACTGACAAACATTTTGATCTTTAGTCAGTGATTTTGGGCTTGAATGTTTTGGAGTTGAGGAACTGTTCCACGGCAAAATGCCTCTCTTCAGAAGCAAAGCACGAGTCTTCTCTGCCAAGTTTTTTCAACTGTTGCTGATTCAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAAGTCAGTAAGCCATGACCATTTTCCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577472" ref_strand="+" ref_description="SGN-E577472 [59452]">
      <seq>caagtttcttgcttcatagtattgcaaagatgctccaagaagttcatcaagaacaaactgcacccaaaccttgcattatcttatatgctaaaagaaagcctttgttatgtaaatttacaaatctagaaaaaaacaagctcagctaattctatacatttaataaaataacaagatatagaatttatagagtggactacgattcatgaaatgagaccccatgttctgctggcaaaataggaaaatggtcatggcttactgacctgaacgaatgtttagaagctttaagtgtgttacattcctgcagtattcgtcacgctcttaacgaataaagaatctcatgaaatcagcaacagttgaaaagcatggcagagaagactcgtgctttgcttctgaagagaggcattttgtagtggaacagttccttaacttcaaaacattcaagcccaaaatcactggctaaagatcaaaatgtttgtcagtcatccaagtaatcatcattaaacatcattctagcactagcacattcctctattgcttttgcattcacttccctgccatacctccatatgtagttcaaaccgacgagcagctctgtgattgctgattctgtcttttcttgatttgcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="28608" stop="27364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28308" g_stop="27664" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E577472" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28308" e_stop="27664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTCTTGCTTCATAGTATTGCAAAGATACTCCAA-AAGTTCATCAAGAACAAACTACTGCACCAAACCTTTCATTATCTTATATGCTAAAAGAAAGCCTTTGTTATGTAAATATACAAAGCTAG-AAAAAACAATCTCAGCTAATTCTATACATTTAACAAAATAACAAGATATAGAATTTATAGCGTGGACTCCGATTCATCAAATGTGATCCCAAGTTCTGCTGGCAAAATAGGAAAATGGTCATGGCTTACTGACCTGAAAGAATGTTCAGAAGCTTTAAGTGTGTTACATTTCTGCAGTATTCGTCACCCTTTTGACGAATAAGGAATCTCATGGAATCTGAGTAGCTTGAATCAGCAACAGTTGAAAAAACTTGGCAGAGAAGACTCGTGCTTTGCTTCTGAAGAGAGGCATTTTGCCGTGGAACAGTTCCTCAACTCCAAAACATTCAAGCCCAAAATCACTGACTAAAGATCAAAATGTTTGTCAGTCATCCAAGTAATCATCATTAAACATCATTCTAGCACTAGCACATTCCTCTATCGCTTTAGCATTCACTTCCCTGCCATACCTCCATATGTAGTTCAAACCAACGAGCAGCTCTGTGATTGCTGATTCTGTCTTTTCTTGATTTGCATAA</genome_strand>
        <mrna_strand>CAAGTTTCTTGCTTCATAGTATTGCAAAGATGCTCCAAGAAGTTCATCAAGAACAAACTGC-AC-CCAAACCTTGCATTATCTTATATGCTAAAAGAAAGCCTTTGTTATGTAAATTTACAAATCTAGAAAAAAACAAGCTCAGCTAATTCTATACATTTAATAAAATAACAAGATATAGAATTTATAGAGTGGACTACGATTCATGAAATGAGACCCCATGTTCTGCTGGCAAAATAGGAAAATGGTCATGGCTTACTGACCTGAACGAATGTTTAGAAGCTTTAAGTGTGTTACATTCCTGCAGTATTCGTCACGCTCTTAACGAATAAAGAATCTC-----A--T--G-A-----AATCAGCAACAGTTG-AAAAGCATGGCAGAGAAGACTCGTGCTTTGCTTCTGAAGAGAGGCATTTTGTAGTGGAACAGTTCCTTAACTTCAAAACATTCAAGCCCAAAATCACTGGCTAAAGATCAAAATGTTTGTCAGTCATCCAAGTAATCATCATTAAACATCATTCTAGCACTAGCACATTCCTCTATTGCTTTTGCATTCACTTCCCTGCCATACCTCCATATGTAGTTCAAACCGACGAGCAGCTCTGTGATTGCTGATTCTGTCTTTTCTTGATTTGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235996" ref_strand="+" ref_description="SGN-E235996 [cLED-16-G20]">
      <seq>caagctactcatattccatgagattccttattcgtcaaaagggtgacgaatactgcagaaatgtaacacacttaaagcttctgaacattctttcaggtcagtaagccatgaccattttcctattttgccagcagaacttgggatcacatttgatgaatcggagtccacgctataaattctatatcttgttattttgttaaatgtatagaattagctgagattgttttttctagctttgtatatttacataacaaaggctttcttttagcatataagataatgaaaggtttggtgcagtagtttgttcttgatgaacttttggagtatctttgcaatactatgaagcaagaaatttgagaattagtaaagccacatttctggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="27653" stop="28635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27953" g_stop="28335" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E235996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27953" e_stop="28335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTTGCCAGCAGAACTTGGGATCACATTTGATGAATCGGAGTCCACGCTATAAATTCTATATCTTGTTATTTTGTTAAATGTATAGAATTAGCTGAGATTGTTTTTTCTAGCTTTGTATATTTACATAACAAAGGCTTTCTTTTAGCATATAAGATAATGAAAGGTTTGGTGCAGTAGTTTGTTCTTGATGAACTTTTGGAGTATCTTTGCAATACTATGAAGCAAGAAATTTGAGAATTAGTAAAGCCACATTTCTGGCC</genome_strand>
        <mrna_strand>CAAGCTACTCATATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTTGCCAGCAGAACTTGGGATCACATTTGATGAATCGGAGTCCACGCTATAAATTCTATATCTTGTTATTTTGTTAAATGTATAGAATTAGCTGAGATTGTTTTTTCTAGCTTTGTATATTTACATAACAAAGGCTTTCTTTTAGCATATAAGATAATGAAAGGTTTGGTGCAGTAGTTTGTTCTTGATGAACTTTTGGAGTATCTTTGCAATACTATGAAGCAAGAAATTTGAGAATTAGTAAAGCCACATTTCTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738683" ref_strand="+" ref_description="SGN-E738683 [LC14CD07]">
      <seq>caattcacaaccaccaccaccgnttctcgagtcgccgccaccgccatgtatcggagtcggtcggcgcgatcctcatcactcagggagccggagagtcgactctctgagtccgacaaaattgaaggtgccggtagctgggatgcccttgaatggaccaaaatcgatcctgttgcgaggtcgattcctattggagttaaacagtttttgttggaagccgagcaagttatagtagagggttatggggtagttcttgtcaacactgatgatgctggaaccttatacgtgactaattttcgcctcctattcttgagtgaagggtctagagatatcatcacaattggcacaataccgttggcaaccattgaaaagttccagaaaattgctgtgaagcttccatcaggtccacgtcaacctgaaaagactagatcacagcgattgcttcagatcatcggcaaagatatgagaatcatcgtgtttggttttcgtgctcgaaccaagcagaggcgtgctgtctatgatgcattattacggtgtacaaggcctgcaactttatgggatctctatgcatttgctggtggtccatccaggtttagcaacacaaatcccaaagtaaggctgttgaatgagtattgccgacttcttggaatggggttttatcaagcttctatccgtgctattgaagatggggcatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="38707" stop="47578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39006" g_stop="39169" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39170" i_stop="39322" i_length="153">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39323" g_stop="39391" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="234" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39392" i_stop="41136" i_length="1745">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41137" g_stop="41211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="309" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41212" i_stop="42051" i_length="840">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42052" g_stop="42123" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="381" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42124" i_stop="42413" i_length="290">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42414" g_stop="42483" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="451" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42484" i_stop="42575" i_length="92">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42576" g_stop="42625" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="501" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42626" i_stop="47084" i_length="4459">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47085" g_stop="47278" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="695" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E738683" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39006" e_stop="39169"/>
          <exon e_start="39323" e_stop="39391"/>
          <exon e_start="41137" e_stop="41211"/>
          <exon e_start="42052" e_stop="42123"/>
          <exon e_start="42414" e_stop="42483"/>
          <exon e_start="42576" e_stop="42625"/>
          <exon e_start="47085" e_stop="47278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCACAACCACCACCACCG-TTCTCGAGTCGCCGCCACCGCCATGTATCGGAGTCGGTCGGCGCGATCCTCATCACTCAGGGAGCCGGAGAGTCGACTCTCTGAGTCCGACAAAATTGAAGGTGCCGGTAGCTGGGATGCCCTTGAATGGACCAAAATCGATGTAAATATATTTCACTTCTCTTAGGGTTCTATAAATTCAATTCAATTTATAGATTCCGTTTAATGTGTGTTGAATTCTTCTAAAAACAATTTAATTGAATGCGGAATTTAATTTTTTTTTCCTTTTTTTTTTTTGGGTGATTAATACGTGCAGCCTGTTGCGAGGTCGATTCCTATTGGAGTTAAACAGTTTTTGTTGGAAGCCGAGCAAGTTATAGTAGAGGTAACTATATCTGTGCTTTTTATTTGGTGTATCTATGTATGTGTAGTGCATTTTCAATAATTGTGTTTCCAGACAATGAAATCATGCCTCTAGTGATTAATTGATGTGTAGTTATAGTACGGAATATAGATGCTTTTTGGAAAGAAATCTGCAAGGAAATAATTAGAGGATAATTTGTATTGTTATTTACGGTGTGTGCGCAATGTATTGAAAGAATGATACTTAAAGTAGTGGTTATTTGAATCTCCACTTTGAGGAATTGGATTAATTTTCACAACATTATGTTATGGATGCTGAAATTATTTATTTCAATTGTAATTTGATTAGTAGGTACTGAATTCGGGTATGCTTTTTCACACTTTGTACATATACTGTGAGCATTTTCTGATCATGATGTAAATAATTCCGAGATGCAAGAAAAGAATGCATTGATGCGAGGTAACATAAAGAATGCTTTTGGGGAAAGTTATTCTCATTTCTTAATTGCTTACAGAAAATGAAGTATCATATGTAGATGATATGTTGTTTTCTTTAGGGGCGGGGGTTCCATATCGCTCGATGTCACTTATTATTGAAAAATTAAATCTGGCCCTTAGTTGCGAATATAAGGATTTCATCCATTACAGAAAAGTTGGTCGGCCTGTACACAGTGAGAATATGTTATACAACCAAAGTGGAGCAATTTGGAGATCAACAAGATGTTTTTATGGTTGGCTAGGTGTATGATTTTGGTTAAAATTTGCCAGTTCACTTAAGTTTAGAGGTACTTAAAAAGGGTTTACTATGGTTAACCAACCACCTTATGAATTGTGAATGTGTCCCTGCGATTTTTTGATAGGATAAAGTAGCGTTGGGAGTAGTATCTTAGCTTTAACGTTTCTGTAGAAGATGGGCATCTCTTTCTTAGGGAACTTAGTACTTAGTTCAGGGATTATGGTCTTAGAAGCTTTTATTCCCATCCGACATAGGACCTGATCTCCGAACTTTAACTAGATAAGCTTCCTTTTAACTCTGTAAGAGACTAACAATTATCCTTTTTTTTTTGCAACTTAGTTATTCAGTTGTCTCTTAAGCTTTTGCACAAGAATGTGATCGAACTAATCTTTCTTCCTTTTTATTTTTGCTGAAATCTTTGACTATTTGAAGCCTTTCAGATTCTTCAGCTTAAGAAATTATTATTTTCTAATCATTATCAAGAAAATAAATTATTATCTTTTATTGATGTTTCTTGAAAGTACATTTAGTCAATTATCTAAAAAAAAAGGTCTACCTTTAGTAAATTATTATAAATCCTCAGGTTGTGTTTCAAACAAGATGGTGACAGTTTATTTCTGAATTTTCTTTGTTTAGAAGCATTTATTAACTAATGCATAAGATACAAAATATGATTTACCTCACATACAGTGCTATTTTTAATATTTTTCCTGATTTATTGGGAAGACATGACGCTGGTTCGTGAGGGTCTTAATTTCTTTTTTTTTTCATTAGTTTATATGTTGATTTCTTCGATAGTTACTGAATATCTTGATTGTTTCTTTCTTATGATCATTTGGTTATTTATCTACTCATGTGTTCGTATAGAGTTTTATTTAGATCATGAAGACTTATCATATTGGAACAACTTATTAATAAGTTATTGATAAAAAGCCTCTGTACTAAAGCCTCAAATTGATCTAGTAGAGGCTTTCATCAGTTTCTTTTCTCTTCAGTTGGCACAAGCCTGAAGGTTAACTGATTATTTCCAGGGTTATGGGGTAGTTCTTGTCAACACTGATGATGCTGGAACCTTATACGTGACTAATTTTCGCCTCCTATTCTTGGTAAGTAATACACGCAGTTCTCATATTTTATATCTGATGGTGTATATGGCCTGGTTATGGAAGTTCCCTTTTGTAAATCTATGCCAGTGAAATTGCCCTCTAATACTGCAAATTCATTTTTTAAATAATATTATCGGAAACATCCTCTCTACCTTCACAAGGTAGGGGTAAGGTTGCGTATGCACCACCTTCTCTCGACCTCGCTTGTGGGATTACACTAGATATGTTATTGTTGTATAATATTGTAATGATTTATAAAGCACTTGATTTCTGAAGGTCTAGTGTCAATCTTAAGAGCCATACTGATGAGGTATTTAGATTGTTAAAATTTGTGAATGCTTACGCCTTATCTTTTTTTTGGATGCATGTGCATTGACTTTGAAAAAAACGTATTTTACTTCTTTTTCTCTACAGTTGAACAGCTTATGCGGTGTAGTTTATTCTTTTTCTTTGGATGAAGTAAAATATTTTATATAGTAGGCATCAAGAATATGCAGCAAGTACAAAAGAAGGGTAAAAGACAGCTTGGTACAAAAAGTGCTAAGCTAGGAAGAGAGCTGACTGTCCAATAAGATTGTGATTTCTTGAATGCTCAGATAGTATTTCAACATTCTGTGGTTTTGGTGGTAGTTTCAGATTTCCTGCTGGGATTATTGAAAGATCTTGGTCTCACGCTTAAAATTGCTTTCTAAACTGCCTTGAGTGCTCTAGGCACGCATGCTTGGTTACATACATGAATTACATGAAATAATTTTGCAGTTCCACAATTTTCTTCTCATCTTCTTCTGCTTTCTGCTATTTTGTACTGAATTTAATGATGTTTCTCTTTGTATTATCTAGAGTGAAGGGTCTAGAGATATCATCACAATTGGCACAATACCGTTGGCAACCATTGAAAAGTTCCAGAAAATTGTAGGTTTGCTGTTGTTTCTTCTTATAATCCAGATATTCAACAGTTAAATTGTATCTCTCTTTTCATTTGAGATAAAGGTGGTGTCCGGTCAACTTTTGCGCACTTCAATTAATCGACAACATAGTTGTGTTCACTAAAGTTAGCTATATGGGAAGAAACCACCTAGCTTTTTTCCCTCTATATAAATTTGAACCTTGGTCTTTCACGGTCCATTCTAGAATCAGTACTATGTAACCCTTTCCTGTGTTGGTCAAGTCTGGCTATAATTCTTTCTTTTCCTGCTAACCAGGCTGTGAAGCTTCCATCAGGTCCACGTCAACCTGAAAAGACTAGATCACAGCGATTGCTTCAGATCATCGGTATGTTATTACATGAAGGCACTGTCCATCCTCGGAGAATATGTTATTATTAGATATTCTGATAATGGTAAATTAAATTTGTGTTTTTTCAGGCAAAGATATGAGAATCATCGTGTTTGGTTTTCGTGCTCGAACCAAGCAGGTTAACTCATGAAAACCCATGTGCTGATTTTATCACTTTTTTCTTATGTATATGCTTTGGGCTTCATTAAGATGATTTGGTCATTCATTAATATAATGGCTTTGTTATCTTCTCTTTGTGGTTGTGGGGGAGGAGGGGGTCCATGATATTCCCACTGCTTTATGTGTCTCGAACTTGCAGACCGAGTTCTCTATAGTAGCATGAGAGTTTCCAGTTTCTCTTCTTGACTGGGTGGTTTGAGTTTTTGTCCTTTGAATAAATTTTGTGGACTATTACTGATAGGAGATGTGCATTTCACCAAGTTTAATGCCCTGAGAAACTCAGGTTAGACAAAGTGAATTTAGAGATTTTGAAAATATAATGAGTTAGAGATTACAACGGTCAGAAATATCTAGATTCATTGTACATCTCTAGTTTATTTGGTAGTGTGCTTATAAAACTTGTACTTAAGTAGAAAGACAATAAATAGAAACTTCACTTTCCTCATTTAGGAAGAAGTATTCCATGAGGGTCTCCTAATACAATGAATCGTCTTTTATGTTATTTCTAACCAATTCTTAGGAGTTCTTTCCTCTACTTTATTGTCCTTTCTACAGTACCTGGGATTTATAAAATTTAGAGGTACTTATTTAAGTGTCCAGTCAATTACTTAATCGTGAAAATAAGTAAATTCTCACCATGTTTTGTTGTTCCTTGTTTATGCTTTATCCTCTCACAATGATGTTTTATACTGTCACATTGAAGTAGCATTCATTCTCTTTACCTTGATTCTTTCCTCAGTGATCTCCATTCCAGAAAAATAAAAAACTCAGGTCTTATGTCTTTGCTGTTTTTCTCCATTCCACCTGATTTTGACATACAAGAATTTTGTTGCAATACACGCAATGGTGAGATCTTCTCTGAGATCCTATGCTTATGCGGCTTAAGGTTTTAGTTCCAGTCGCAGGTACGTGGACGTGCCTCCCGTGTCAAGATTCTATCAGCCATGTTAACACGTCATCCCTGTCCCATGTCATTCCCTCTCTGTTACTTAAACAATACAGTTCACTTCATTATTTTAACCATTACATCCACATCATCTGACATGTCAAGTTATAATTCATTATAACTAACTTGTCCTGTGAGTAGTCCTTGTAATCTGAACCAACCAATCTAGTAACAGCCAGTAATCATTGCCATGACATCATTGTGCCACGCTGTTGGTCTATGTCAGGTGACTGGTCAAGTCAGCATCCACATCAGCTGACATGTCAAGTCTATAGTTCACATAAATGTAGCTAATATTCCATGCCAACCAATATGTCAAGTTAGTCAATTTATCTGGTTACTACTACACATTACCACTTGTCATTAAATCACACTGGCATACAGAATCTAGTCAATCAATAATAACAACATACCCGGTGAAATCAGAGGTTTGGGGTGGAGTATTGGCCAGTCACAAGCTCACATATTCATAAGATGCATGTTGCGGAGATGAGGATGGTGAGATGGATGTGTCAGCATACTAGGAGTGGCAAGATTAGGAATAAGGTTATTCGGAGAAGATGACAGTGGCCTCTGTAGTGGACAAGATGAGGGAAACGAGATTGAATGGTTTGAGTATGTCTAGAGGATGTGCGTTGATGGCCTAGTGAGGAGGTGCAAGAGGTTAGTTGTAGGGGATACGCGGAGGGATAGAGGTACACGAGAAAGTAGTGGGGAAGAGGTGAGTAGATAGTACATGGTGCAACTTATTACGGAGGACACGACTCTAGATAAGAAGGAGTGAGTTCGCATATTAGGGTAGAATGTTAGGGAGACGTGTTGTCTTGCAATATAGGTTTAGGCTTGTTAATGCCTATTGTAGTATTAGTCTTACCCTTGAAGTTCTTGTCATATGTTGTTTATTGTGTTTCAATTATTGCACTATTTTGTTTTTACGTTTCTTTCTTGTAGTCTTTAGATTGCTTTTCTTATTAAAGACTATGCTTTCTTCATTGTTTTTTCCTTCCTTTACTTGGGTTTGATCCACTTGAGCCGAGGATCTTTTGGAAATAGCCTCTTTATTTCCGCGAGGTTGTGGTAAGGTTTGCTTATACTCCACCTCTCCAAACTCCACTTAGTGGGATTTCGCGGGGTATGTTGTTGTTCTTGGGGTCTAGGGAGGGTATGCGTACGCAAGCTTTACCAGTACCTCATAAAGATAGTGAGGTTGTTTTCCAAAGATCCTCAATTCAAGTACAACAAATTCAGCTAATAAAAAAGAAAATAGTGAAGAAAACATAACAACTAGTAAGAGAAGTTGTGCTACAAGAAAATCATAAGAACAAGAAAAAAATAGTGTAGTAATGGAAACAAATGATAGTAGATATCAAAAGCAAGAACTACAAGAGTACGACTAGTACAACGATAGACCCAACAAGCCTAAACCCTACAAGATCTAGATAACACTCTCTACTACCTACTAATGTTCTACCCTAATACTCGACCTCCTCCACCCCCCTTATCTAAGATCATATCCTTGTTAATATGTAGTTGCGTCAAGTCCTGTCTAATGAAATTTCCCCAATGCCTTTTCAACTTACCTTTACCTTTTACTGTGCCTACTATATTCAACCTTTTACACTTCGGGGCGTCTGCGCATCTCCTTTTCATAGGTTCAAATCATTCTATCTCGCTCCCCTTATCTTATCCACCACGAACGCCACTCCTACCTTACCCCGGATTACCTTATTCCTAATTTTATCGCTCTTAGTATCTCCAGACATTCATCTCAGCAACCTCCGCAACATGCATTTTTTTGAACGTGGGAGTTTTTGGCCTAAACTTTGCCCCGTACTACATCGTCAGTCTAACCACCATTTTATAAGTTAAGTTTTGGTGGTGCATTTTTATTACACAAGACTCTAGAGGCAACCCTCCACATCGTATCAATATGATGTATGATATCATAATCGTTGAAGTCATCTTTCTTGGGAATAGCCTGTGTGCCAAGCTTCACTTCCACGCCTGCCTCATTCATTGTATCATTGAATTTTCACTCCATTTTGGTCCTGCTCAACCTAAACCCTTTAGACTCCTGAGTTTGTCTCCACACTTCTAGCCTAGCATTAACTCTACTACGTGTCTTTCAATCAAGACTATATCAATCGCAAATAACATACACTAAAGCACCTCGTTTTGAATATACCACGTCAATTCATCCATCACCCAGGCAAACAGGAATGGACTAAGAACTGATCCTTGGTGCAACCCCATCTCTAATGGGAAGTGTTACAAGTCTCCTTCTACCGTTCTAACTCGAGTTTTGGCTCCATCATACATGTCCTTTATTTCCCTTATATAGTTCACTTGTACACCTCCAGGCATCTCCGGAGGACTCCCCTTGGAACTTTGTCGTAGGATTTTTCAAGGTCATGAACACCACATGTAAGTCCCTCTTCCTTTTACGATATTTCTCCATTAGTCTCCTCTAAAGATGGATGGCTTCTGTAGTCGATCGCATCAACATGATTCCAAACTGGTTCTCGGAAATGGACGCATCTCCTCACCCTCATCTCTACTACTCTCTCCCAAATTGTACTCCACCTTCATTCTTCGGGCATTTTGTGGTCCTAAAAATGACGTCAAACAAACTAGAATGAATGTGCTTTCCAGGAGTCGGAAGTTAATTTTTCCATTTCGATGCATTCTGTTCCTATATTTTCCATTTTGATGCATTCTGTTCCTATATTTGAAGTCTAGTTGTCAAATTCTTTCTGAAGTCCAAGAATCAAGTACATTTTTGGTTAGCTTGGAGCGTTGATATATATACTTCTAGCTCGAGGGTGTTTAACAGAGTTGTATAGGATGCCGAGATGCTCTAGGTTAATTGTATAGCATGTTTCTAATAGTTGTATTATAATTGTGATAATCATCGAACTGTTTTATATAGGGAACTTCCCTAGTAATTTCCTTGTTTTAGAAACTTCTATCTATAAAATCCTATTGTAGGGTCATAACCAGCATTCATTTCAGAGTAATATTTTACAGCATTTACTTGTTGCTGTATATAAATGAATTACTTTTACCAAAAAAGTGTACATTCATTACGAGTTTTCTCTTTTTCTCTTGTTCTACAGCAATATTGAGATACTATTTTAACTTCTTCAGTGATAGCTGCATATAGATTTGCTTCAAAATGATGAAATTTATGCAGGATGAAGGTGTATTTGTGGGGAGCCACATCTCATTTGTGATGGCTTTAGTAGTTGTTAATACCTCCATATATGCTATTTCAATGCCCTGATGCATTGTAAGACAATTATGGTAGTTGAAACTGGACAGTAATCTGAATACGTATATGTTTAGCATAGATCTGTAATATCCTGCATTCATTAACAAAGTTATGCAGACTTTTTACTTCACAAGCTTGTCCTAACTTCTGGCGAAACAACTGCACACATTTTGCTTACAAGCTTTTCTTATGGTTTCCCAGAGGCGTGCTGTCTATGATGCATTATTACGGTGTACAAGGCCTGCAACTTTATGGGATCTCTATGCATTTGCTGGTGGTCCATCCAGGTTTAGCAACACAAATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTAC</genome_strand>
        <mrna_strand>CAATTCACAACCACCACCACCGNTTCTCGAGTCGCCGCCACCGCCATGTATCGGAGTCGGTCGGCGCGATCCTCATCACTCAGGGAGCCGGAGAGTCGACTCTCTGAGTCCGACAAAATTGAAGGTGCCGGTAGCTGGGATGCCCTTGAATGGACCAAAATCGAT.........................................................................................................................................................CCTGTTGCGAGGTCGATTCCTATTGGAGTTAAACAGTTTTTGTTGGAAGCCGAGCAAGTTATAGTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGGGGTAGTTCTTGTCAACACTGATGATGCTGGAACCTTATACGTGACTAATTTTCGCCTCCTATTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGGTCTAGAGATATCATCACAATTGGCACAATACCGTTGGCAACCATTGAAAAGTTCCAGAAAATT..................................................................................................................................................................................................................................................................................................GCTGTGAAGCTTCCATCAGGTCCACGTCAACCTGAAAAGACTAGATCACAGCGATTGCTTCAGATCATCG............................................................................................GCAAAGATATGAGAATCATCGTGTTTGGTTTTCGTGCTCGAACCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTGCTGTCTATGATGCATTATTACGGTGTACAAGGCCTGCAACTTTATGGGATCTCTATGCATTTGCTGGTGGTCCATCCAGGTTTAGCAACACAAATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737996" ref_strand="+" ref_description="SGN-E737996 [LC11DH04]">
      <seq>tcggtcggcgcgatcctcatcactaaaggagccggaaagtcgactctctgagtccgacaaaattgaaggtgccggaagctgggatgcccttgaatggaccaaaatcgatcctgttgcgaggtcgattcctattggagttaaacagtttttgttggaagccgagcaagttatattagagggttatggggtagttcttgtcaactctgatgatgcgggaaccttatacgtgactaattttcgcctcctattcttgagtgaagggtctaaagatatcatcccaattggcacaataccgttggcaaccattgaaaagttccagaaaagtgctgtgaagcttccatcaagtccacgtcaacctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="38761" stop="42751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39061" g_stop="39169" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39170" i_stop="39322" i_length="153">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39323" g_stop="39391" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="178" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39392" i_stop="41136" i_length="1745">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41137" g_stop="41211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="253" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41212" i_stop="42051" i_length="840">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42052" g_stop="42123" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="325" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42124" i_stop="42413" i_length="290">
            <donor d_prob="0.705" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42414" g_stop="42451" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="363" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E737996" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39061" e_stop="39169"/>
          <exon e_start="39323" e_stop="39391"/>
          <exon e_start="41137" e_stop="41211"/>
          <exon e_start="42052" e_stop="42123"/>
          <exon e_start="42414" e_stop="42451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTCGGCGCGATCCTCATCACTCAGGGAGCCGGAGAGTCGACTCTCTGAGTCCGACAAAATTGAAGGTGCCGGTAGCTGGGATGCCCTTGAATGGACCAAAATCGATGTAAATATATTTCACTTCTCTTAGGGTTCTATAAATTCAATTCAATTTATAGATTCCGTTTAATGTGTGTTGAATTCTTCTAAAAACAATTTAATTGAATGCGGAATTTAATTTTTTTTTCCTTTTTTTTTTTTGGGTGATTAATACGTGCAGCCTGTTGCGAGGTCGATTCCTATTGGAGTTAAACAGTTTTTGTTGGAAGCCGAGCAAGTTATAGTAGAGGTAACTATATCTGTGCTTTTTATTTGGTGTATCTATGTATGTGTAGTGCATTTTCAATAATTGTGTTTCCAGACAATGAAATCATGCCTCTAGTGATTAATTGATGTGTAGTTATAGTACGGAATATAGATGCTTTTTGGAAAGAAATCTGCAAGGAAATAATTAGAGGATAATTTGTATTGTTATTTACGGTGTGTGCGCAATGTATTGAAAGAATGATACTTAAAGTAGTGGTTATTTGAATCTCCACTTTGAGGAATTGGATTAATTTTCACAACATTATGTTATGGATGCTGAAATTATTTATTTCAATTGTAATTTGATTAGTAGGTACTGAATTCGGGTATGCTTTTTCACACTTTGTACATATACTGTGAGCATTTTCTGATCATGATGTAAATAATTCCGAGATGCAAGAAAAGAATGCATTGATGCGAGGTAACATAAAGAATGCTTTTGGGGAAAGTTATTCTCATTTCTTAATTGCTTACAGAAAATGAAGTATCATATGTAGATGATATGTTGTTTTCTTTAGGGGCGGGGGTTCCATATCGCTCGATGTCACTTATTATTGAAAAATTAAATCTGGCCCTTAGTTGCGAATATAAGGATTTCATCCATTACAGAAAAGTTGGTCGGCCTGTACACAGTGAGAATATGTTATACAACCAAAGTGGAGCAATTTGGAGATCAACAAGATGTTTTTATGGTTGGCTAGGTGTATGATTTTGGTTAAAATTTGCCAGTTCACTTAAGTTTAGAGGTACTTAAAAAGGGTTTACTATGGTTAACCAACCACCTTATGAATTGTGAATGTGTCCCTGCGATTTTTTGATAGGATAAAGTAGCGTTGGGAGTAGTATCTTAGCTTTAACGTTTCTGTAGAAGATGGGCATCTCTTTCTTAGGGAACTTAGTACTTAGTTCAGGGATTATGGTCTTAGAAGCTTTTATTCCCATCCGACATAGGACCTGATCTCCGAACTTTAACTAGATAAGCTTCCTTTTAACTCTGTAAGAGACTAACAATTATCCTTTTTTTTTTGCAACTTAGTTATTCAGTTGTCTCTTAAGCTTTTGCACAAGAATGTGATCGAACTAATCTTTCTTCCTTTTTATTTTTGCTGAAATCTTTGACTATTTGAAGCCTTTCAGATTCTTCAGCTTAAGAAATTATTATTTTCTAATCATTATCAAGAAAATAAATTATTATCTTTTATTGATGTTTCTTGAAAGTACATTTAGTCAATTATCTAAAAAAAAAGGTCTACCTTTAGTAAATTATTATAAATCCTCAGGTTGTGTTTCAAACAAGATGGTGACAGTTTATTTCTGAATTTTCTTTGTTTAGAAGCATTTATTAACTAATGCATAAGATACAAAATATGATTTACCTCACATACAGTGCTATTTTTAATATTTTTCCTGATTTATTGGGAAGACATGACGCTGGTTCGTGAGGGTCTTAATTTCTTTTTTTTTTCATTAGTTTATATGTTGATTTCTTCGATAGTTACTGAATATCTTGATTGTTTCTTTCTTATGATCATTTGGTTATTTATCTACTCATGTGTTCGTATAGAGTTTTATTTAGATCATGAAGACTTATCATATTGGAACAACTTATTAATAAGTTATTGATAAAAAGCCTCTGTACTAAAGCCTCAAATTGATCTAGTAGAGGCTTTCATCAGTTTCTTTTCTCTTCAGTTGGCACAAGCCTGAAGGTTAACTGATTATTTCCAGGGTTATGGGGTAGTTCTTGTCAACACTGATGATGCTGGAACCTTATACGTGACTAATTTTCGCCTCCTATTCTTGGTAAGTAATACACGCAGTTCTCATATTTTATATCTGATGGTGTATATGGCCTGGTTATGGAAGTTCCCTTTTGTAAATCTATGCCAGTGAAATTGCCCTCTAATACTGCAAATTCATTTTTTAAATAATATTATCGGAAACATCCTCTCTACCTTCACAAGGTAGGGGTAAGGTTGCGTATGCACCACCTTCTCTCGACCTCGCTTGTGGGATTACACTAGATATGTTATTGTTGTATAATATTGTAATGATTTATAAAGCACTTGATTTCTGAAGGTCTAGTGTCAATCTTAAGAGCCATACTGATGAGGTATTTAGATTGTTAAAATTTGTGAATGCTTACGCCTTATCTTTTTTTTGGATGCATGTGCATTGACTTTGAAAAAAACGTATTTTACTTCTTTTTCTCTACAGTTGAACAGCTTATGCGGTGTAGTTTATTCTTTTTCTTTGGATGAAGTAAAATATTTTATATAGTAGGCATCAAGAATATGCAGCAAGTACAAAAGAAGGGTAAAAGACAGCTTGGTACAAAAAGTGCTAAGCTAGGAAGAGAGCTGACTGTCCAATAAGATTGTGATTTCTTGAATGCTCAGATAGTATTTCAACATTCTGTGGTTTTGGTGGTAGTTTCAGATTTCCTGCTGGGATTATTGAAAGATCTTGGTCTCACGCTTAAAATTGCTTTCTAAACTGCCTTGAGTGCTCTAGGCACGCATGCTTGGTTACATACATGAATTACATGAAATAATTTTGCAGTTCCACAATTTTCTTCTCATCTTCTTCTGCTTTCTGCTATTTTGTACTGAATTTAATGATGTTTCTCTTTGTATTATCTAGAGTGAAGGGTCTAGAGATATCATCACAATTGGCACAATACCGTTGGCAACCATTGAAAAGTTCCAGAAAATTGTAGGTTTGCTGTTGTTTCTTCTTATAATCCAGATATTCAACAGTTAAATTGTATCTCTCTTTTCATTTGAGATAAAGGTGGTGTCCGGTCAACTTTTGCGCACTTCAATTAATCGACAACATAGTTGTGTTCACTAAAGTTAGCTATATGGGAAGAAACCACCTAGCTTTTTTCCCTCTATATAAATTTGAACCTTGGTCTTTCACGGTCCATTCTAGAATCAGTACTATGTAACCCTTTCCTGTGTTGGTCAAGTCTGGCTATAATTCTTTCTTTTCCTGCTAACCAGGCTGTGAAGCTTCCATCAGGTCCACGTCAACCTGAAAA</genome_strand>
        <mrna_strand>TCGGTCGGCGCGATCCTCATCACTAAAGGAGCCGGAAAGTCGACTCTCTGAGTCCGACAAAATTGAAGGTGCCGGAAGCTGGGATGCCCTTGAATGGACCAAAATCGAT.........................................................................................................................................................CCTGTTGCGAGGTCGATTCCTATTGGAGTTAAACAGTTTTTGTTGGAAGCCGAGCAAGTTATATTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGGGGTAGTTCTTGTCAACTCTGATGATGCGGGAACCTTATACGTGACTAATTTTCGCCTCCTATTCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGGGTCTAAAGATATCATCCCAATTGGCACAATACCGTTGGCAACCATTGAAAAGTTCCAGAAAAGT..................................................................................................................................................................................................................................................................................................GCTGTGAAGCTTCCATCAAGTCCACGTCAACCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456402" ref_strand="+" ref_description="SGN-E456402 [cSTS-29-M12]">
      <seq>atcccaaagtaaggctgttgaatgagtattgccgacttcttggaatggggttttatcaagcttctatccgtgctattgaagatggggcattcacactctcaaatgagtggtggcgtattagcagtgtcaactgtaattacacaatgtccagtacttatccatttgctttactcttaccgaagtccataagtgatgacaaagtggtgcaggctagtgcattccgtgcacggagtaggcttccatccataacatggtgtgatagaggaactggggctgttcttgcacgatcttctcaacctctagttggaatcatgatgaatatgagaagcaatgctgatgaaaaatctagttgctgcactctgtactcaaattgctggagagaaacgaaggaagctatatattgctgatgcaaggccgaggaaaaatgctttagcaaatggggcaatgggaggtggatcggagtcatctgcaaactatttccagtctgagattgttttctttggcattgataatatacatgcaatgagggagagtcttggtcggcttagagactatgtanatacttatggtactacttcatcagacgggatgtcatcttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="46885" stop="49069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47185" g_stop="47374" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47375" i_stop="47468" i_length="94">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47469" g_stop="47542" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="264" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47543" i_stop="47618" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47619" g_stop="47682" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="328" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47683" i_stop="47830" i_length="148">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47831" g_stop="47890" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="389" r_length="61" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47891" i_stop="48192" i_length="302">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48193" g_stop="48292" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48293" i_stop="48655" i_length="363">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48656" g_stop="48769" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="603" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E456402" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47185" e_stop="47374"/>
          <exon e_start="47469" e_stop="47542"/>
          <exon e_start="47619" e_stop="47682"/>
          <exon e_start="47831" e_stop="47890"/>
          <exon e_start="48193" e_stop="48292"/>
          <exon e_start="48656" e_stop="48769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTACACTTTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAGGTGAGGTTTTGTGTTTCGTTCTTCCATATTTCTTGGGTTTAAGTGATTATTATTTTGGTATTTACCTAATGACTTTTCGTTCTGCTTACTTTAGTGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAGGTATGCCTAAATTTAGTTCCTTGCACTCATTTGCCTTGATCTTGTTCGACCATTGCTTATGTTTTGCTGTTCTTAGGAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAGGTTATTCAAAATTATATGATTCTTTTTCTTTTATGAATTTGTATTACGTTTGTTCTCCTGAAAAATTAAGTGGGCTGTTAAAGATTTACAGTGGTCTCTGTTTCCTCGAGCTAATTTCAAAAAGAAATTTATTTGTTCTTTTCTGCAGCAATGCTGATG-AAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGACAGAAACGAAGGTTTTCCTTTTACTTCTCCACTTTTTATATCAGCAATTTCTAGATGTCTTCTTGATTAAATTTTTGTTCATAAGCCTTACAAGTAAATTTCTTGGTATGTGGCTAGTTAATAGAATTTCTTTCAATTCTTCGCTCGGTCAGGTCCTTAAAGTACTTATAATCTTGTTTCTCTTCTTGTTACTGATTCTTTTTAGATAGTTCCCTTTTGATGAATCACTCCTTTCAGATAGCTGCATGTGGAGTTCTACAGCATAGCTGGCTATCTCTTATTAATTGTGTATGTTCTTTATTTGTCGACGTAGGAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCGGAGGTCTGTTTAATATTTGAGCTGTCTGGTTATGCTGCTGTTTCCGTCATAATACTCCATGTGTTTCATTATACATGGACACACTTTCTTTTTTAGTTTTCCCCAGAAAGAATGACTTATTTGGTAATTTCTTAACCTTAGCTTCCCGTACCCTTAATGACATGCTCTTATAGCCATAGAAATGTCATGGCATGGCATGGTTAAGACCACATGATCTTAGGGTACTTCAGCTGCGTGCCAAAAATCTTTCTTTGTTTCTTCAACTCCATAACCATTTAGAAACCTAAATATATAATGTGACGGTGGAGTATATTTTTCCCTTTTTTCTCTTGGGACTTATGTTGCTTGATTTACATGCCCTTACAGATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTAGATACTTATGGAACTACTTCATCAGACGGAATGTCATCTTATCTG</genome_strand>
        <mrna_strand>ATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTCACACTCTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAG..............................................................................................TGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAG............................................................................GAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAG....................................................................................................................................................CAATGCTGATGAAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGAGAGAAACGAAG..............................................................................................................................................................................................................................................................................................................GAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCTGAG...........................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTANATACTTATGGTACTACTTCATCAGACGGGATGTCATCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426243" ref_strand="+" ref_description="SGN-E426243 [STM-46-C8]">
      <seq>atcccaaagtaaggctgttgaatgagtattgccgacttcttggaatggggttttatcaagcttctatccgtgctattgaagatggggcattcacactctcaaatgagtggtggcgtattagcagtgtcaactgtaattacacaatgtccagtacttatccatttgctttactcttaccgaagtccataagtgatgacaaagtggtgcaggctagtgcattccgtgcacggagtaggcttccatccataacatggtgtgatagaggaactggggctgttcttgcacgatcttctcaacctctagttggaatcatgatgaatatgagaagcaatgctgatgaaaatctagttgctgcactctgtactcaaattgctggagagaaacgaaggaagctatatattgctgatgncaggccgaggaaaaatgctttagcaaatggggcaatggggaagtggatcggagtcatctgcaaactatttccagtctgagattgtttctttggcattgataatatacatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="46885" stop="48989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47185" g_stop="47374" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47375" i_stop="47468" i_length="94">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47469" g_stop="47542" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="264" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47543" i_stop="47618" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47619" g_stop="47682" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="328" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47683" i_stop="47830" i_length="148">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47831" g_stop="47890" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="388" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47891" i_stop="48192" i_length="302">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48193" g_stop="48292" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="489" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48293" i_stop="48655" i_length="363">
            <donor d_prob="0.909" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48656" g_stop="48689" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="522" r_length="33" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E426243" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47185" e_stop="47374"/>
          <exon e_start="47469" e_stop="47542"/>
          <exon e_start="47619" e_stop="47682"/>
          <exon e_start="47831" e_stop="47890"/>
          <exon e_start="48193" e_stop="48292"/>
          <exon e_start="48656" e_stop="48689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTACACTTTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAGGTGAGGTTTTGTGTTTCGTTCTTCCATATTTCTTGGGTTTAAGTGATTATTATTTTGGTATTTACCTAATGACTTTTCGTTCTGCTTACTTTAGTGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAGGTATGCCTAAATTTAGTTCCTTGCACTCATTTGCCTTGATCTTGTTCGACCATTGCTTATGTTTTGCTGTTCTTAGGAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAGGTTATTCAAAATTATATGATTCTTTTTCTTTTATGAATTTGTATTACGTTTGTTCTCCTGAAAAATTAAGTGGGCTGTTAAAGATTTACAGTGGTCTCTGTTTCCTCGAGCTAATTTCAAAAAGAAATTTATTTGTTCTTTTCTGCAGCAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGACAGAAACGAAGGTTTTCCTTTTACTTCTCCACTTTTTATATCAGCAATTTCTAGATGTCTTCTTGATTAAATTTTTGTTCATAAGCCTTACAAGTAAATTTCTTGGTATGTGGCTAGTTAATAGAATTTCTTTCAATTCTTCGCTCGGTCAGGTCCTTAAAGTACTTATAATCTTGTTTCTCTTCTTGTTACTGATTCTTTTTAGATAGTTCCCTTTTGATGAATCACTCCTTTCAGATAGCTGCATGTGGAGTTCTACAGCATAGCTGGCTATCTCTTATTAATTGTGTATGTTCTTTATTTGTCGACGTAGGAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAAT-GGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCGGAGGTCTGTTTAATATTTGAGCTGTCTGGTTATGCTGCTGTTTCCGTCATAATACTCCATGTGTTTCATTATACATGGACACACTTTCTTTTTTAGTTTTCCCCAGAAAGAATGACTTATTTGGTAATTTCTTAACCTTAGCTTCCCGTACCCTTAATGACATGCTCTTATAGCCATAGAAATGTCATGGCATGGCATGGTTAAGACCACATGATCTTAGGGTACTTCAGCTGCGTGCCAAAAATCTTTCTTTGTTTCTTCAACTCCATAACCATTTAGAAACCTAAATATATAATGTGACGGTGGAGTATATTTTTCCCTTTTTTCTCTTGGGACTTATGTTGCTTGATTTACATGCCCTTACAGATTGTTTTCTTTGGCATTGATAATATACATGCAA</genome_strand>
        <mrna_strand>ATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTCACACTCTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAG..............................................................................................TGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAG............................................................................GAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAG....................................................................................................................................................CAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGAGAGAAACGAAG..............................................................................................................................................................................................................................................................................................................GAAGCTATATATTGCTGATGNCAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGGAAGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCTGAG...........................................................................................................................................................................................................................................................................................................................................................................ATTG-TTTCTTTGGCATTGATAATATACATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452092" ref_strand="+" ref_description="SGN-E452092 [cSTS-15-J19]">
      <seq>gttgaatgagtattgccgacttcttggaatggggttttatcaagcttctatccgtgctattgaagatggggcattcacactctcaaatgagtggtggcgtattagcagtgtcaactgtaattacacaatgtccagtacttatccatttgctttactcttaccgaagtccataagtgatgacaaagtggtgcaggctagtgcattccgtgcacggagtaggcttccatccataacatggtgtgatagaggaactggggctgttcttgcacgatcttctcaacctctagttggaatcatgatgaatatgagaagcaatgctgatgaaaatctagttgctgcactctgtactcaaattgctggagagaaacgaaggaagctatatattgctgatgcaaggccgaggaaaaatgctttagcaaatggggcaatgggaggtggatcggagtcatctgcaaactatttccagtctgagattgttttctttggcattgataatatacatgcaatgagggagagtcttggtcggcttagagactatgtagatacttatggtactacttcatcagacggaatgtcatcttttctgaggcatggtggatggagttggggcggaggcaatctcagcagtatgtcagcttcagtttctactctgggggacactggggtggttaatacatgtgcagactgtcctgggctggttctgcttggattgctgcacgtgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="46901" stop="49437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47201" g_stop="47374" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47375" i_stop="47468" i_length="94">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47469" g_stop="47542" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="248" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47543" i_stop="47618" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47619" g_stop="47682" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="312" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47683" i_stop="47830" i_length="148">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47831" g_stop="47890" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="372" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47891" i_stop="48192" i_length="302">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48193" g_stop="48292" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="472" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48293" i_stop="48655" i_length="363">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48656" g_stop="48769" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="586" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48770" i_stop="48997" i_length="228">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48998" g_stop="49137" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="728" r_length="142" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E452092" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47201" e_stop="47374"/>
          <exon e_start="47469" e_stop="47542"/>
          <exon e_start="47619" e_stop="47682"/>
          <exon e_start="47831" e_stop="47890"/>
          <exon e_start="48193" e_stop="48292"/>
          <exon e_start="48656" e_stop="48769"/>
          <exon e_start="48998" e_stop="49137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTACACTTTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAGGTGAGGTTTTGTGTTTCGTTCTTCCATATTTCTTGGGTTTAAGTGATTATTATTTTGGTATTTACCTAATGACTTTTCGTTCTGCTTACTTTAGTGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAGGTATGCCTAAATTTAGTTCCTTGCACTCATTTGCCTTGATCTTGTTCGACCATTGCTTATGTTTTGCTGTTCTTAGGAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAGGTTATTCAAAATTATATGATTCTTTTTCTTTTATGAATTTGTATTACGTTTGTTCTCCTGAAAAATTAAGTGGGCTGTTAAAGATTTACAGTGGTCTCTGTTTCCTCGAGCTAATTTCAAAAAGAAATTTATTTGTTCTTTTCTGCAGCAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGACAGAAACGAAGGTTTTCCTTTTACTTCTCCACTTTTTATATCAGCAATTTCTAGATGTCTTCTTGATTAAATTTTTGTTCATAAGCCTTACAAGTAAATTTCTTGGTATGTGGCTAGTTAATAGAATTTCTTTCAATTCTTCGCTCGGTCAGGTCCTTAAAGTACTTATAATCTTGTTTCTCTTCTTGTTACTGATTCTTTTTAGATAGTTCCCTTTTGATGAATCACTCCTTTCAGATAGCTGCATGTGGAGTTCTACAGCATAGCTGGCTATCTCTTATTAATTGTGTATGTTCTTTATTTGTCGACGTAGGAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCGGAGGTCTGTTTAATATTTGAGCTGTCTGGTTATGCTGCTGTTTCCGTCATAATACTCCATGTGTTTCATTATACATGGACACACTTTCTTTTTTAGTTTTCCCCAGAAAGAATGACTTATTTGGTAATTTCTTAACCTTAGCTTCCCGTACCCTTAATGACATGCTCTTATAGCCATAGAAATGTCATGGCATGGCATGGTTAAGACCACATGATCTTAGGGTACTTCAGCTGCGTGCCAAAAATCTTTCTTTGTTTCTTCAACTCCATAACCATTTAGAAACCTAAATATATAATGTGACGGTGGAGTATATTTTTCCCTTTTTTCTCTTGGGACTTATGTTGCTTGATTTACATGCCCTTACAGATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTAGATACTTATGGAACTACTTCATCAGACGGAATGTCATCTTATCTGGTATGCCGCCAATTTATCTGGTATTCCCGTTTTTCTTCTCTCATTATGGTCTGTGCCATCAGTATTTAGTGGCCCAGCCAGAAGCTTCGTCATTGGTAAGGAAATAAGAAAATTAACGGGGAGTTCTATCCTTCTGCCACATTAAATTTCTCTCTTCTTTTTGGAGGTGGGGTGTGGTTGGGCTGTGATGATAAGTTAATGCTGTCAATTGATTATCTGCTTTTACAGAGGCATGGTGGATGGAGTTGGGGCGGAGGCAATCTCAGCAGTATGTCAGCTTCAGTTTCTACTCTGGGGGACACT-GGGTGGTTAATACATGTGCAGACTGTCCT-GGCTGGTTCTGCTTGGATTGCTGCACGTGTTGCACT</genome_strand>
        <mrna_strand>GTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTCACACTCTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAG..............................................................................................TGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAG............................................................................GAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAG....................................................................................................................................................CAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGAGAGAAACGAAG..............................................................................................................................................................................................................................................................................................................GAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCTGAG...........................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTAGATACTTATGGTACTACTTCATCAGACGGAATGTCATCTTTTCTG....................................................................................................................................................................................................................................AGGCATGGTGGATGGAGTTGGGGCGGAGGCAATCTCAGCAGTATGTCAGCTTCAGTTTCTACTCTGGGGGACACTGGGGTGGTTAATACATGTGCAGACTGTCCTGGGCTGGTTCTGCTTGGATTGCTGCACGTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456582" ref_strand="+" ref_description="SGN-E456582 [cSTS-29-P4]">
      <seq>gttgaatgagtattgccgacttcttggaatggggttttatcaagcttctatccgtgctattgaagatggggcattcacactctcaaatgagtggtggcgtattagcagtgtcaactgtaattacacaatgtccagtacttatccatttgctttactcttaccgaagtccataagtgatgacaaagtggtgcaggctagtgcattccgtgcacggagtaggcttccatccataacatggtgtgatagaggaactggggctgttcttgcacgatcttctcaacctctagttggaatcatgatgaatatgagaagcaatgctgatgaaaatctagttgctgcactctgtactcaaattgctggagagaaacgaaggaagctatatattgctgatgcaaggccgaggaaaaatgctttagcaaatggggcaatgggaggtggatcggagtcatctgcaaactatttccagtctgagattgttttctttggcattgataatatacatgcaatgagggagagtcttggtcggcttaaagactatgtagatacttatggtactacttcatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="46901" stop="49049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47201" g_stop="47374" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47375" i_stop="47468" i_length="94">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47469" g_stop="47542" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="248" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47543" i_stop="47618" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47619" g_stop="47682" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="312" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47683" i_stop="47830" i_length="148">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47831" g_stop="47890" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="372" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47891" i_stop="48192" i_length="302">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48193" g_stop="48292" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="472" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48293" i_stop="48655" i_length="363">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48656" g_stop="48749" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="566" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E456582" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47201" e_stop="47374"/>
          <exon e_start="47469" e_stop="47542"/>
          <exon e_start="47619" e_stop="47682"/>
          <exon e_start="47831" e_stop="47890"/>
          <exon e_start="48193" e_stop="48292"/>
          <exon e_start="48656" e_stop="48749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTACACTTTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAGGTGAGGTTTTGTGTTTCGTTCTTCCATATTTCTTGGGTTTAAGTGATTATTATTTTGGTATTTACCTAATGACTTTTCGTTCTGCTTACTTTAGTGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAGGTATGCCTAAATTTAGTTCCTTGCACTCATTTGCCTTGATCTTGTTCGACCATTGCTTATGTTTTGCTGTTCTTAGGAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAGGTTATTCAAAATTATATGATTCTTTTTCTTTTATGAATTTGTATTACGTTTGTTCTCCTGAAAAATTAAGTGGGCTGTTAAAGATTTACAGTGGTCTCTGTTTCCTCGAGCTAATTTCAAAAAGAAATTTATTTGTTCTTTTCTGCAGCAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGACAGAAACGAAGGTTTTCCTTTTACTTCTCCACTTTTTATATCAGCAATTTCTAGATGTCTTCTTGATTAAATTTTTGTTCATAAGCCTTACAAGTAAATTTCTTGGTATGTGGCTAGTTAATAGAATTTCTTTCAATTCTTCGCTCGGTCAGGTCCTTAAAGTACTTATAATCTTGTTTCTCTTCTTGTTACTGATTCTTTTTAGATAGTTCCCTTTTGATGAATCACTCCTTTCAGATAGCTGCATGTGGAGTTCTACAGCATAGCTGGCTATCTCTTATTAATTGTGTATGTTCTTTATTTGTCGACGTAGGAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCGGAGGTCTGTTTAATATTTGAGCTGTCTGGTTATGCTGCTGTTTCCGTCATAATACTCCATGTGTTTCATTATACATGGACACACTTTCTTTTTTAGTTTTCCCCAGAAAGAATGACTTATTTGGTAATTTCTTAACCTTAGCTTCCCGTACCCTTAATGACATGCTCTTATAGCCATAGAAATGTCATGGCATGGCATGGTTAAGACCACATGATCTTAGGGTACTTCAGCTGCGTGCCAAAAATCTTTCTTTGTTTCTTCAACTCCATAACCATTTAGAAACCTAAATATATAATGTGACGGTGGAGTATATTTTTCCCTTTTTTCTCTTGGGACTTATGTTGCTTGATTTACATGCCCTTACAGATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTAGATACTTATGGAACTACTTCATCAG</genome_strand>
        <mrna_strand>GTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTCACACTCTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAG..............................................................................................TGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAG............................................................................GAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAG....................................................................................................................................................CAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGAGAGAAACGAAG..............................................................................................................................................................................................................................................................................................................GAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCTGAG...........................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAAAGACTATGTAGATACTTATGGTACTACTTCATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271456" ref_strand="+" ref_description="SGN-E271456 [cLEM-5-B2]">
      <seq>gtctaaatggagaacattagtcccttctattcatgtttctgttgattcctctttggatattttatcagtaatattcttattagttgggactacgttttagtcatggtactacgttaactttaggttttatgttttctaagagcctcttagtcctatttagcagagacctcccccaggtttttgctccatcacactgacgtcccttgtgatatacaatactacacttatttgttttaatttctctataacatttcttttaacttatatattattaatttataaaaattgtgatatgactaacttgccatttgtaatatatgctgttttgcttaattaatattataaatgtacttctgtgaaataaaaagcaatacactagctctcttgcaatggcattgatgatctcataagagctatagaaatagggagctgctgatcactcgttcataggttaatcaagggttaagttggttgttttatagcagaactttttatgtgattatcatgtattaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="48918" stop="50033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49218" g_stop="49733" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E271456" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49218" e_stop="49733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAATGGAGAACATTAGTCCCTTCTATTCATGTTTCTGTTGATTCCTCTTTGGATATTTTATCAGTAATATTCTTATTAGTTGGGACTACGTTTTAGTCATGGTACTACGTTAACTTTAGGTTTTATGTTTTCTAAGAGCCTCTTAGTCCTATTTAGCAGAGACCTCCCCCAGGTTTTTGCTCCATCACACTGACGTCCCTTGTGATATACAATACTACACTTATTTGTTTTAATTTCTCTATAACATTTCTTTTAACTTATATATTATTAATTTATAAAAATTGTGATATGACTAACTTGCCATTTGTAATATATGCTGTTTTGCTTAATTAATATTATAAATGTACTTCTGTGAAATAAAAAGCAATACACTAGCTCTCTTGCAATGGCATTGATGATCTCATAAGAGCTATAGAAATAGGGAGCTGCTGATCACTCGTTCATAGGTTAATCAAGGGTTAAGTTGGTTGTTTTATAGCAGAACTTTTTATGTGATTATCATGTA-TAATATG</genome_strand>
        <mrna_strand>GTCTAAATGGAGAACATTAGTCCCTTCTATTCATGTTTCTGTTGATTCCTCTTTGGATATTTTATCAGTAATATTCTTATTAGTTGGGACTACGTTTTAGTCATGGTACTACGTTAACTTTAGGTTTTATGTTTTCTAAGAGCCTCTTAGTCCTATTTAGCAGAGACCTCCCCCAGGTTTTTGCTCCATCACACTGACGTCCCTTGTGATATACAATACTACACTTATTTGTTTTAATTTCTCTATAACATTTCTTTTAACTTATATATTATTAATTTATAAAAATTGTGATATGACTAACTTGCCATTTGTAATATATGCTGTTTTGCTTAATTAATATTATAAATGTACTTCTGTGAAATAAAAAGCAATACACTAGCTCTCTTGCAATGGCATTGATGATCTCATAAGAGCTATAGAAATAGGGAGCTGCTGATCACTCGTTCATAGGTTAATCAAGGGTTAAGTTGGTTGTTTTATAGCAGAACTTTTTATGTGATTATCATGTATTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476275" ref_strand="+" ref_description="SGN-E476275 [cSTB-43-L18]">
      <seq>ccccatttttttgcagtgggttgattgtgtttcacagttgttaaggatgtatccctttgcctttgagttctcttcggctttcctggtagatcttctggattgcatgctttcttgtcgttttggaaactttttgtgcaacagcgagaaggaaagagagcaagctggtatatatgatgcttgtggatgcctgtggatgcatttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcacaaggtggggaagttgaggctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaattagcagaaacaagacttaacgaagcaagtgtcaccgtggagtccttagctacagagctgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagatcaagcaaagaaactgcaactataaagcgtgcagtacaatctttggggttcaatgtctacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="51144" stop="53550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51269" g_stop="51284" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51285" i_stop="51456" i_length="172">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51457" g_stop="51516" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="76" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51517" i_stop="51638" i_length="122">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51639" g_stop="51703" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="141" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51704" i_stop="52295" i_length="592">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52296" g_stop="52575" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="421" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53070" g_stop="53250" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="602" r_length="181" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E476275" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51269" e_stop="51284"/>
          <exon e_start="51457" e_stop="51516"/>
          <exon e_start="51639" e_stop="51703"/>
          <exon e_start="52296" e_stop="52575"/>
          <exon e_start="53070" e_stop="53250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATTTTTTTGCAGGTATGTCTTTTGGGCAGATAAGTCTGCACGGTGCGAAGTTCTATCGCTTGTTTGGGTTAATTTCCTGCATTTGACAAAATATCCCCCCAGCCCTGTGCTTCTTCTTCTATTGACCCTTAACTGATTTCTTAAATTTTTACTCTAACTTGATATGCTTGGATGTGCTTTGCAGTGGGTTGATTGTGTTTCGCAGTTGTTGAGGATGTATCCCTTTGCCTTTGAGTTCTCTTCGGTATGTGTTCCTAAAGGACATGAAAAATTAAATATGAGTAAAAATATTATGTTCAAGTAAACAAACAAATTACACCCACCGGAGAAAATAAAGCTTCCCATCTTTCAATTCCAACAATGCAGGCTTTCCTGGTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAGGTAATCTATCTTGGAAGTATTTTCTTTTGCACTTTCATTTCTGTACACTTTTTTGTTGAAAAAAGGGAATTACACACACTCTGTTAAGAAGTTAAGGTGCTTGTTTGATATATTGATATGAACGAGATCCAGGTCTGATAAAAGGGAATAGAATTAGAGTTAACAACCTGAAGAAGAGGTGTTATAGTTCTGAGGCGTCCTCTTTCTATAATATCCCCCGGGTCACGTTTGAATCATGTTAAAAGCTAGGTCTCTTGTTCAACACAAAAGAGCATAGTCATTGTCATGTGTGTGTGACTTATTTTAAAAGAAATTATCCCATATTATGATGCAAGAATGACTACATGAAAAAAAAATCATTTTTTGTATCTGTTCTTTTCTTTCTTTCTTCATTCATTTTTTTTGGGTGGGGTCGGGGGTGGGTTATTTATACTTTTATGATCAGGATTTGCAGCTATTAAGCACTGTAGGAAAATTTGCCACCTCAGTGGTTTTGGCTTTACGTTGTTTGAACTCCATCACGGGAAGCTAGGATTCTCTAAATGTCATTTCCTAGTTTTAATTCACTTCTTCTGACTTTTATAAATTTCAGCGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTA</genome_strand>
        <mrna_strand>CCCCATTTTTTTGCAG............................................................................................................................................................................TGGGTTGATTGTGTTTCACAGTTGTTAAGGATGTATCCCTTTGCCTTTGAGTTCTCTTCG..........................................................................................................................GCTTTCCTGGTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGAAACTTTTTGTGCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGCATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCACAAGGTGGGGAAGTTGAGGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAATTAGCAGAAACAAGACTTAACGAAGCAAGTGTCACCGTGGAGTCCTTAGCTACAGAGCTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGATCAAGCAAAGAAACTGCAACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726960" ref_strand="+" ref_description="SGN-E726960 [LA13BC09]">
      <seq>cggtagatcttctggattgcatgctttcttgtcgttttgggaactttttgtgcaacagcgagaaggaaagagagcaagctggtatatatgatgcttgtggatgcctgtggatgtatttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcagaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagagcaagcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagtttttacaaaagatattaatggcacagtgtcccacagtgagaaagcagacctctctgaacctgtttctgtggcagaagataatgtttccgacaatcctctcatccgagtttgtggatctctatgcccgaagcacactagagatggagagtgtcagttgccaaatgctggttgtgctcagtttcagagccaattggttgatttcaagcccactttgatgcatttgatcggctttcgatatatgatagttatttcggaaagtaagaaagatggtttcagctaagcatcaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="51347" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51646" g_stop="51703" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51704" i_stop="52295" i_length="592">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52296" g_stop="52575" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="338" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53070" g_stop="53615" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="883" r_length="545" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E726960" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51646" e_stop="51703"/>
          <exon e_start="52296" e_stop="52575"/>
          <exon e_start="53070" e_stop="53615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAGGTAATCTATCTTGGAAGTATTTTCTTTTGCACTTTCATTTCTGTACACTTTTTTGTTGAAAAAAGGGAATTACACACACTCTGTTAAGAAGTTAAGGTGCTTGTTTGATATATTGATATGAACGAGATCCAGGTCTGATAAAAGGGAATAGAATTAGAGTTAACAACCTGAAGAAGAGGTGTTATAGTTCTGAGGCGTCCTCTTTCTATAATATCCCCCGGGTCACGTTTGAATCATGTTAAAAGCTAGGTCTCTTGTTCAACACAAAAGAGCATAGTCATTGTCATGTGTGTGTGACTTATTTTAAAAGAAATTATCCCATATTATGATGCAAGAATGACTACATGAAAAAAAAATCATTTTTTGTATCTGTTCTTTTCTTTCTTTCTTCATTCATTTTTTTTGGGTGGGGTCGGGGGTGGGTTATTTATACTTTTATGATCAGGATTTGCAGCTATTAAGCACTGTAGGAAAATTTGCCACCTCAGTGGTTTTGGCTTTACGTTGTTTGAACTCCATCACGGGAAGCTAGGATTCTCTAAATGTCATTTCCTAGTTTTAATTCACTTCTTCTGACTTTTATAAATTTCAGCGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTC</genome_strand>
        <mrna_strand>CGGTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTC-AAGCCCACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAAGTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726149" ref_strand="+" ref_description="SGN-E726149 [LA10BH05]">
      <seq>gtagatcttctggattgcatgctttcttgtcgttttgggaactttttgtgcaacagcgagaaggaaagagagcaagctggtatatatgatgcttgtggatgcctgtggatgtatttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcagaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagagcaagcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="51348" stop="53545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51648" g_stop="51703" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51704" i_stop="52295" i_length="592">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52296" g_stop="52575" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="336" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53070" g_stop="53245" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="512" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E726149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51648" e_stop="51703"/>
          <exon e_start="52296" e_stop="52575"/>
          <exon e_start="53070" e_stop="53245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAGGTAATCTATCTTGGAAGTATTTTCTTTTGCACTTTCATTTCTGTACACTTTTTTGTTGAAAAAAGGGAATTACACACACTCTGTTAAGAAGTTAAGGTGCTTGTTTGATATATTGATATGAACGAGATCCAGGTCTGATAAAAGGGAATAGAATTAGAGTTAACAACCTGAAGAAGAGGTGTTATAGTTCTGAGGCGTCCTCTTTCTATAATATCCCCCGGGTCACGTTTGAATCATGTTAAAAGCTAGGTCTCTTGTTCAACACAAAAGAGCATAGTCATTGTCATGTGTGTGTGACTTATTTTAAAAGAAATTATCCCATATTATGATGCAAGAATGACTACATGAAAAAAAAATCATTTTTTGTATCTGTTCTTTTCTTTCTTTCTTCATTCATTTTTTTTGGGTGGGGTCGGGGGTGGGTTATTTATACTTTTATGATCAGGATTTGCAGCTATTAAGCACTGTAGGAAAATTTGCCACCTCAGTGGTTTTGGCTTTACGTTGTTTGAACTCCATCACGGGAAGCTAGGATTCTCTAAATGTCATTTCCTAGTTTTAATTCACTTCTTCTGACTTTTATAAATTTCAGCGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTA</genome_strand>
        <mrna_strand>GTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731716" ref_strand="+" ref_description="SGN-E731716 [LA27DH07]">
      <seq>gcctgtggatgtatttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcagaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagagcaagcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagtttttacaaaagatattaatggcacagtgtcccacagtgagaaagcagacctctctgaacctgtttctgtggcagaagataatgtttccgacaatcctctcatccgagtttgtggatctctatgcccgaagcacactagagatggagagtgtcagttgccaaatgctggttgtgctcagtttcagagccaattggttgatttcaaagccaactttgatgcatttgatcggctttcgatatatgatagttatttcggaagttaagaaagatggtttcagctaaccatcaagctcaatttatgtgatcagatatctttgtacagttgggaattaaatggaggcgggcagtaggttcaatttctattattaacaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52040" stop="53997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52340" g_stop="52575" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53070" g_stop="53697" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="865" r_length="629" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E731716" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52340" e_stop="52575"/>
          <exon e_start="53070" e_stop="53697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGC-GGCAGTAGGTTCAGTTTCTATTATTAGCAAAAAT</genome_strand>
        <mrna_strand>GCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAACCATCAAGCTCAATTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGGCAGTAGGTTCAATTTCTATTATTAACAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731634" ref_strand="+" ref_description="SGN-E731634 [LA27CH07]">
      <seq>gcctgtggatgtatttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcagaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagagcaagcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagtttttacaaaagatattaatggcacagtgtcccacagtgagaaagcagacctctctgaacctgtttctgtggcagaagataatgtttccgacaatcctctcatccgagtttgtggatctctatgcccgaagcacactagagatggagagtgtcagttgccaaatgctggttgtgctcagtttcagagccaattggttgatttcaaagccaactttgatgcatttgatcggctttcgatatatgatagttatttcggaagttaagaaagatggtttcagctaagcatcaagctcagtttatgtgatcaaatatctttgtacagttgggaattaaatggaggcggcagtaagttcagtttctattattagcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52040" stop="53997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52340" g_stop="52575" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53070" g_stop="53697" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="864" r_length="628" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E731634" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52340" e_stop="52575"/>
          <exon e_start="53070" e_stop="53697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGCAGTAGGTTCAGTTTCTATTATTAGCAAAAAT</genome_strand>
        <mrna_strand>GCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAAATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGCAGTAAGTTCAGTTTCTATTATTAGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380032" ref_strand="+" ref_description="SGN-E380032 [TUS-3-P5]">
      <seq>atttagctggactaaggacatctgaaggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcagaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcagaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagagcaagcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagtttttacaaaagatattaatggcacagtgtcccacagtgagaaagcagacctctctgaacctgtttctgtggcagaagataatgtttccgacaatcctctcatccgagtttgtggatctctatgcccgaagcacactagagatggagagtgtcagttgccaaatgctggttgtgctcagtttcagagccattggnttgatttcaagccaactttgatgcatttgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52052" stop="53851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52352" g_stop="52575" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53070" g_stop="53551" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="705" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E380032" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52352" e_stop="52575"/>
          <exon e_start="53070" e_stop="53551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCG</genome_strand>
        <mrna_strand>ATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCATTGGNTTGATTTC-AAGCCAACTTTGATGCATTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210010" ref_strand="+" ref_description="SGN-E210010 [cLEC-40-D20]">
      <seq>atttagctggactaaggacatctgagggaagctctcatgcgcattacaacctattctatgacccactgaaacataatggtcctatacttccaccagcagcagctttagctccaactgtgtggcctcagtttcaccttcgttgggcttgcccctcaaaggcgcaaggtggggaagttgaagctgaatgcaggaagctgacgagaaaattctctgagctgcaaagggccaaagaactagcaaaaacaagacttaacgaagcaagtgtctccgtggagtccttagttacagaactgagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaaaagcaagcaaagaaactgctactataaagcgtgcagtacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52052" stop="53527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52352" g_stop="52575" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53070" g_stop="53227" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="382" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E210010" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52352" e_stop="52575"/>
          <exon e_start="53070" e_stop="53227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGGGTAACCTCTTTCCTTTTATCCTTTTTCCCCCTTTGTCTTAGTATCCCTGTAATTTTTCCATAGGGTTGAATATGTTCCTGTATACTCTCTTTAATATGTAATTAGGAACTTGAAGTTATAACATGTTGTGGCAGGTTTGGATATTTTAGAAATAGAAATACAAATTGTTACCCTCTTTTTTCCTCTGCTGACTCCTCTCTCCTCTGGCCTCTCCGAAAAGGAAAAAAAGAAAGTTTCCAGCTTGAAACTGCGAGTGCATGAAAACCTAAATATAGCATCTTAATGTTGACAGAAATTATAATGGTAGACCAAATTTGGCTTATATCAGTTCCATGAGAAGATTAACTACTATGACAAGCATAACTTTCTAGCTTATTTGTAGTGTAGCATGTAGCTGTCGCTCGACTGTTGCATCTTAATTTTGTCAATGCATGCTAGAACTTGGGGTGTATCCATAACTCCTTCATTAACCGTCTAAAACAACTTTTACACAGGCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATC</genome_strand>
        <mrna_strand>ATTTAGCTGGACTAAGGACATCTGAGGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAAAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGAACTAGCAAAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAAAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457525" ref_strand="+" ref_description="SGN-E457525 [cPRO-2-P18]">
      <seq>gagaaatgagaaacttgcaagcacctctgccagggatgcggtaaaaagatcaagcaaagaaactgcaactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagttcttacaaaggatataaatggtacagtgtcccacagtgagaaagcagacctctctgaacctgtttctatgatggaagataatgtttctgacaatcctctcatccgagtttgtggatctctgtgcccgatgcacactanagatggagagtgccagttgccaaatgctggttgtactcagtttcagagccaattggttgatttcaaagccaactttgatgcatttgatcggctttcgatatatgatagttatttcggaagttaacaaagatggtttcagccaagcatcaaacttcatttatctggtcagatatctttgtacagatgggaattaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52838" stop="53959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53138" g_stop="53659" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E457525" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53138" e_stop="53659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGG</genome_strand>
        <mrna_strand>GAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGATCAAGCAAAGAAACTGCAACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTCTTACAAAGGATATAAATGGTACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTATGATGGAAGATAATGTTTCTGACAATCCTCTCATCCGAGTTTGTGGATCTCTGTGCCCGATGCACACTANAGATGGAGAGTGCCAGTTGCCAAATGCTGGTTGTACTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAACAAAGATGGTTTCAGCCAAGCATCAAACTTCATTTATCTGGTCAGATATCTTTGTACAGATGGGAATTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379298" ref_strand="+" ref_description="SGN-E379298 [TUS-3-P5](-)">
      <seq>gcaaagaaactgctactataaagcgtgcagtacaatctttggggttcaatgtctactttacagcagatggagactgtaatgtaggcattgaaaggaacccaaccgaaatccctcagcgatctatctgctcagtttttacaaaagatattaatggcacagtgtcccacagtgagaaagcagacctctctgaacctgtttctgtggcagaagataatgtttccgacaatcctctcatccgagtttgtggatctctatgcccgaagcacactagagatggagagtgtcagttgccaaatgctggttgtgctcagtttcagagccaattggttgatttcaaagccaactttgatgcatttgatcggctttcgatatatgatagttatttcggaagttaagaaagatggtttcagctaagcatcaagctcagtttatgtgatcagatatctttgtacagttgggaattaaatggaggcggcagtaggttcagtttctattattagcaaaaatcacagcaaacaattagacagaagtagcagtagtgagtacaaccagctttgaaacatagtttctgttagattgagatggctcaagaactgtacatggagaactgatttgagtttctatgcggatcatctgaaagttttgacatcgcggaggattgagaagatttgaactgatattatttagatacaattcatatgtacattttgacataggcgttcctcctccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="52891" stop="54220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53191" g_stop="53920" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E379298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53191" e_stop="53920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGCAGTAGGTTCAGTTTCTATTATTAGCAAAAATCACAGCAAACAATTAGACAGAAGTAGCAGTAGTGAGTACAACCAGCTTTGAAACATAGTTTCTGTTAGATTGAGATGGCTCAAGAACTGTACATGGAGAACTGATTTGAGTTTCTATGCGGATCATCTGAAAGTTTTGACATCGCGGAGGATTGAGAAGATTTGAACTGATATTATTTAGATACAATTCATATGTACATTTTGACATAGGCGTTCCTCCTCCG</genome_strand>
        <mrna_strand>GCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGCAGTAGGTTCAGTTTCTATTATTAGCAAAAATCACAGCAAACAATTAGACAGAAGTAGCAGTAGTGAGTACAACCAGCTTTGAAACATAGTTTCTGTTAGATTGAGATGGCTCAAGAACTGTACATGGAGAACTGATTTGAGTTTCTATGCGGATCATCTGAAAGTTTTGACATCGCGGAGGATTGAGAAGATTTGAACTGATATTATTTAGATACAATTCATATGTACATTTTGACATAGGCGTTCCTCCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713942" ref_strand="+" ref_description="SGN-E713942 [FB10AD03]">
      <seq>gaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtacagcctgtgtttcagcccttgttgataattcttgctaaagcaagtggatgcgtgcatgagctatactgtaagctcatatatttcattcaacttgataagttctttttaaatgaaaagatagtgctcttgagtacatgatatttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58308" stop="54618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58008" g_stop="57846" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54918" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="598" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E713942" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58008" e_stop="57846"/>
          <exon e_start="55352" e_stop="54918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAGTTCTTTTTAAATGAAAAGATAGTGCTCTTGAGTACATGATATTTGGAGA</genome_strand>
        <mrna_strand>GAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAGTTCTTTTTAAATGAAAAGATAGTGCTCTTGAGTACATGATATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420104" ref_strand="+" ref_description="SGN-E420104 [STM-30-P19]">
      <seq>ggcggacaccacaacaacaatctccggcgactctattccgattcccgatgaccagcaaaacaattccacgaacccacttgcatcatttatctctagtgttcttcagttcttcaaaccgccgccgccatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaaccccattgtcttgtggcaggtttatgctattggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatctgatgaagaacctcctcccagtcaagagtagactttgtactgcaacatgttagacaagagaaaacaaagaatgacacttgtggagacaggtttatgacttcatatgagtcttgtaaagtgttgaagtcacagttctggttttacaatactaaatgtaaaaacccggatcaagctttacgtcaattagccagtcagcattattttgtacaacctgtgtttcggccgttcttgctaaagcaagtggatgtgtgcatgagttattgtaaagctcatatattcattcaacttgataagctccttttttttaatgaaaagttggtgctcttgagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58439" stop="54659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58145" g_stop="57846" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54926" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="716" r_length="418" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E420104" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58145" e_stop="57846"/>
          <exon e_start="55352" e_stop="54926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAG-T--TCTTTTTAAATGAAAAGATAGTGCTCTTGAGTACATGATA</genome_strand>
        <mrna_strand>GGCG-GAC-ACCACAACAACAATCTCCGGCGACTCTATTCCGATTCCCGATGACCAGCAAAACAATTCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGTTCTTCAAACCGCCGCCGCCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAACCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATTGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCTGATGAAGAACCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGACAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTCATATGAGTCTTGTAAAGTGTTGAAGTCACAGTTCTGGTTTTACAATACTAAATGTAAAAACCCGGATCAAGCTTTACGTCAATTAGCCAGTCAGCATTATTTTGTACAACCTGTGTTTC-GGCC-----G----TTCTTGCTAAAGCAAGTGGATGTGTGCATGAGTTATTGT-AAAGCTCATATA-TTCATTCAACTTGATAAGCTCCTTTTTTTTAATGAAAAGTTGGTGCTCTTGAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712761" ref_strand="+" ref_description="SGN-E712761 [FB05DA06]">
      <seq>aaacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtacagcctgtgtttcagcccttgttgataattcttgctaaagcaagtggatgcgtgcatgagctatactgtaagctcatatatttcattcaacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58471" stop="54668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58171" g_stop="57846" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54968" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="711" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E712761" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58171" e_stop="57846"/>
          <exon e_start="55352" e_stop="54968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAA</genome_strand>
        <mrna_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420105" ref_strand="-" ref_description="SGN-E420105 [STM-30-P19]">
      <seq>tccgattcccgatgaccagcaaaacaattccacgaacccacttgcatcattatcttctagtgttcttcagttcttcaaaccgccgccgccatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaaccccattgtcttgtggcaggtttatgctattggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatctgatgaagaacctcctcccagtcaagagtagactttgtactgcaacatgttagacaagagaaaacaaagaatgacacttgtggagacaaggtttatgacttcatatgagtcttgtaaagtgttgaagtcacagttctggttttacaatactaaatgtaaaaacccggatcaagctttacgtcaattagccagtcagcattattttgtacaacctgtgtttcggccgttcttgctaaagcaagtggatgtgtgcatgagttattgtaaagctcatatattcattcaacttgataagctcctttttttgaaaaaaaagttggtgctcttgcgtaatttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58407" stop="54659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58107" g_stop="57846" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54968" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="636" r_length="374" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E420105" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58107" e_stop="57846"/>
          <exon e_start="55352" e_stop="54968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGAC-AGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAA</genome_strand>
        <mrna_strand>TCCGATTCCCGATGACCAGCAAAACAATTCCACGAACCCACTTGCATCATTATCTTCTAGTGTTCTTCAGTTCTTCAAACCGCCGCCGCCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAACCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATTGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCTGATGAAGAACCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGACAAGAGAAAACAAAGAATGACACTTGTGGAGACAAGGTTTATGACTTCATATGAGTCTTGTAAAGTGTTGAAGTCACAGTTCTGGTTTTACAATACTAAATGTAAAAACCCGGATCAAGCTTTACGTCAATTAGCCAGTCAGCATTATTTTGTACAACCTGTGTTTC-GGCC-----G----TTCTTGCTAAAGCAAGTGGATGTGTGCATGAGTTATTGT-AAAGCTCATATA-TTCATTCAACTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348835" ref_strand="+" ref_description="SGN-E348835 [cTOF-29-N19]">
      <seq>cctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtacagcctgtgtttcagcccttgttgataattcttgctaaagcaagtgnatgcgtgcatgagctatactgtaagctcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58468" stop="54687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58168" g_stop="57846" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54987" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="688" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E348835" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58168" e_stop="57846"/>
          <exon e_start="55352" e_stop="54987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATAT</genome_strand>
        <mrna_strand>CCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTG-AATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGNATGCGTGCATGAGCTATACTGTAAGCTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690638" ref_strand="+" ref_description="SGN-E690638 [LH_Ea04A12]">
      <seq>ccatgttagaaacctccaaaaacttagctatggcggacacccctacaacaactatctccggtgactctactccagttaccggtgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagctttttaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaagcagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagacaagagataacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaagtcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttatatgaatttgccagtcagcatcattttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58481" stop="54764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58180" g_stop="57846" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="621" r_length="289" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E690638" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58180" e_stop="57846"/>
          <exon e_start="55352" e_stop="55064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACA</genome_strand>
        <mrna_strand>CCATGTTAGAAACCTCCAAAAACTTAGCTATGGCGGACACC-C--CTACAACAACTATCTCCGGTGACTCTACTCCAGTTACCGGTGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTTAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAGCAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGACAAGAGATAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAGTCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTATATGAATTTGCCAGTCAGCATCATTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732364" ref_strand="+" ref_description="SGN-E732364 [LB01DH06]">
      <seq>cattacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58469" stop="54764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58173" g_stop="57846" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="617" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E732364" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58173" e_stop="57846"/>
          <exon e_start="55352" e_stop="55064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACA</genome_strand>
        <mrna_strand>CATTACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716524" ref_strand="+" ref_description="SGN-E716524 [FB17BB10]">
      <seq>aatcctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58471" stop="54764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58171" g_stop="57846" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="615" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="633"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E716524" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58171" e_stop="57846"/>
          <exon e_start="55352" e_stop="55064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACA</genome_strand>
        <mrna_strand>AATCCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730321" ref_strand="+" ref_description="SGN-E730321 [LA23DB02]">
      <seq>accttccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58469" stop="54764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58170" g_stop="57846" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55064" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="614" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E730321" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58170" e_stop="57846"/>
          <exon e_start="55352" e_stop="55064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACA</genome_strand>
        <mrna_strand>ACCTTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694478" ref_strand="+" ref_description="SGN-E694478 [LH_Ea04A12](-)">
      <seq>gtcaaaaacctccaaaaacttagctatggcggacaccacaacaacaactatctccggtgactctactccagttaccggtgaccagaaaaacaatcccacgaacccacttgcatcatttatctttagtgttcttcagctttttaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaagcagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagacaagagataacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaagtcacagatgtggttttacagtactaaatgtaaaaacccgaatcaaaatggatatgaatttgccagtcagcatcatttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58476" stop="54764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58176" g_stop="57846" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55069" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="612" r_length="284" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="623"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E694478" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58176" e_stop="57846"/>
          <exon e_start="55352" e_stop="55069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTT</genome_strand>
        <mrna_strand>GTCAAAAACCTCCAAAAACTTAGCTATGGCGGACA-C-C-ACAACAACAACTATCTCCGGTGACTCTACTCCAGTTACCGGTGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTTTAGTGTTCTTCAGCTTTTTAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAGCAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGACAAGAGATAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAGTCACAGATGTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAAATGGATATGAATTTGCCAGTCAGCATCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405669" ref_strand="+" ref_description="SGN-E405669 [PPI-1-C6]">
      <seq>ggcggacaccacacaacaatctccggcgactctattccgattcccgatgaccagcaaaacaattccacgaacccacttgcatcatttatctctagtgttcttcagttcttcaaaccgccgccgccatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaaccccattgtcttgtggcaggtttatgctattggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatctgatgaagaacctcctcccagtcaagagtagactntgtactgcaacatgttagacaagagaaaacaaagaatgacacttgtggagacaggtttatgacttcatatgagtcttgtaaagtgttgaagtcacagttctggttttacaatactaaatgtaaaaacccggatcaagctttacgtcaattagccagtcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58436" stop="54775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58145" g_stop="57846" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55075" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="575" r_length="278" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E405669" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58145" e_stop="57846"/>
          <exon e_start="55352" e_stop="55075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCAT</genome_strand>
        <mrna_strand>GGCG-GAC-ACCAC-ACAACAATCTCCGGCGACTCTATTCCGATTCCCGATGACCAGCAAAACAATTCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGTTCTTCAAACCGCCGCCGCCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAACCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATTGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCTGATGAAGAACCTCCTCCCAGTCAAGAGTAGACTNTGTACTGCAACATGTTAGACAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTCATATGAGTCTTGTAAAGTGTTGAAGTCACAGTTCTGGTTTTACAATACTAAATGTAAAAACCCGGATCAAGCTTTACGTCAATTAGCCAGTCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548403" ref_strand="+" ref_description="SGN-E548403 [TUS-60-O4](-)">
      <seq>aaacctccaaaaacttagctatggcggacaccacaacaancaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatctgagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58471" stop="54776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58171" g_stop="57846" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55077" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="603" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="615"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E548403" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58171" e_stop="57846"/>
          <exon e_start="55352" e_stop="55077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAA-CAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGC</genome_strand>
        <mrna_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAANCAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCTGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540551" ref_strand="+" ref_description="SGN-E540551 [TUS-60-O4]">
      <seq>aaacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatctgagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58471" stop="54776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58171" g_stop="57846" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55077" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="602" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="614"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E540551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58171" e_stop="57846"/>
          <exon e_start="55352" e_stop="55077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGC</genome_strand>
        <mrna_strand>AAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCTGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291431" ref_strand="+" ref_description="SGN-E291431 [cLET-2-G19]">
      <seq>cctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccagttgcatgatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58468" stop="54815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58168" g_stop="57846" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55115" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="561" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E291431" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58168" e_stop="57846"/>
          <exon e_start="55352" e_stop="55115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAA</genome_strand>
        <mrna_strand>CCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCAGTTGCATGATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284408" ref_strand="+" ref_description="SGN-E284408 [cLER-16-M14]">
      <seq>aaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58463" stop="54863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58163" g_stop="57846" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55163" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="508" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E284408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58163" e_stop="57846"/>
          <exon e_start="55352" e_stop="55163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTC</genome_strand>
        <mrna_strand>AAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725912" ref_strand="+" ref_description="SGN-E725912 [LA08CH06]">
      <seq>aacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacacagaatgacacttgtggagacaggtttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58470" stop="54875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58170" g_stop="57846" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55175" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="503" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E725912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58170" e_stop="57846"/>
          <exon e_start="55352" e_stop="55175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGAC</genome_strand>
        <mrna_strand>AACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACACAGAATGACACTTGTGGAGACAGGTTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291350" ref_strand="+" ref_description="SGN-E291350 [cLET-2-D17]">
      <seq>aacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacgggtaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatctgagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58470" stop="54899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58170" g_stop="57846" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55199" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="479" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E291350" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58170" e_stop="57846"/>
          <exon e_start="55352" e_stop="55199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGA</genome_strand>
        <mrna_strand>AACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGGTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCTGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200154" ref_strand="+" ref_description="SGN-E200154 [cLEB-7-N22]">
      <seq>gcacgagaaaacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaagagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaatatggaacgagcgtcgtggaaacaagaagccatacgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58472" stop="54967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58179" g_stop="57846" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55267" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="420" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E200154" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58179" e_stop="57846"/>
          <exon e_start="55352" e_stop="55267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGA</genome_strand>
        <mrna_strand>GCACGAGAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAAGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAATATGGAACGAGCGTCGTGGAAACAAGAAGCCATACGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280107" ref_strand="-" ref_description="SGN-E280107 [cLEL-7-P2](-)">
      <seq>gcacgagaaaacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctatcacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatcggagggttctttgtcttaaggtgggcatggtcaagatggaacgagccgtcgtggaaacaggaagccatccgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58472" stop="54967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58179" g_stop="57846" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="55267" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="421" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E280107" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280107" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58179" e_stop="57846"/>
          <exon e_start="55352" e_stop="55267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAG-CGTCGTGGAAACAGGAAGCCATCCGATGA</genome_strand>
        <mrna_strand>GCACGAGAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATCACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCCGTCGTGGAAACAGGAAGCCATCCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481634" ref_strand="+" ref_description="SGN-E481634 [cSTD-18-L2]">
      <seq>ttgagaaatcgaaaagttatttaaaatataatctatttccctgcctgactcaccaaatgcatttatgctacagtattttactatttatagcagttttgctatctccattattttactatttctctctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctggagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggtacgctgggtccgaaatcacgttctgtggagattatctgtagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcgggtatgctagacactggtggtcctgaattacaagttgtcaataagaacgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67102" stop="69872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67402" g_stop="67647" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="342" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69572" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E481634" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67402" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATAAACCGAAAAGTTATTTAAAATATAAATTATTTCCCGGCCTCACTCACCAAATGCATTTATGCTACAATATTTTTACTATTTAAAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGAT</genome_strand>
        <mrna_strand>TTGAGAAATCGAAAAGTTATTTAAAATATAATCTATTTCCCTGCCTGACTCACCAAATGCATTTATGCTACAGTA-TTTTACTATTTATAGCAGTTTTGCTATCTCCATTATTTTACTATTTCTCTCTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTGGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGTACGCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTGTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GGTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAACGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585698" ref_strand="+" ref_description="SGN-E585698 [68161]">
      <seq>gcacgaggcattatgctacagtgttttactatttatagcagttttgctatctccattattttactatttctctctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacactgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagctgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagtcgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67166" stop="70518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67453" g_stop="67647" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="290" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="388" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="544" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70218" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="618" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E585698" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67453" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATGCATTTATGCTACAATATTTTTACTATTTAAAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCT</genome_strand>
        <mrna_strand>GCACGAGGCA-TTATGCTACAGTGTT-TTACTATTTATAGCAGTTTTGCTATCTCCATTATTTTACTATTTCTCTCTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACACTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCTGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTCGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448337" ref_strand="+" ref_description="SGN-E448337 [cSTS-2-N9]">
      <seq>ccaaatgcatttatgctacagtgttttactatttatagcagttttgctatctccattattttactatttctctctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacactgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagctgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaatnntagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67154" stop="70483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67454" g_stop="67647" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="290" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="388" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="544" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70183" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="583" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E448337" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67454" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGCATTTATGCTACAATATTTTTACTATTTAAAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTAC</genome_strand>
        <mrna_strand>CCAAATGCATTTATGCTACAGT-GTTTTACTATTTATAGCAGTTTTGCTATCTCCATTATTTTACTATTTCTCTCTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACACTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCTGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATNNTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604068" ref_strand="+" ref_description="SGN-E604068 [67259]">
      <seq>tagcagttttgctatctccattattttactatttctctctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacgctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaacggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagagggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67191" stop="70526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67490" g_stop="67647" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="255" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="353" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="509" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="588" r_length="79" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E604068" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67490" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAA-GGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG</genome_strand>
        <mrna_strand>TAGCAGTTTTGCTATCTCCATTATTTTACTATTTCTCTCTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACGCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAACGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737231" ref_strand="+" ref_description="SGN-E737231 [LC08DG07]">
      <seq>cattattctactatttttctctgaactgagctcactcaccgcagtttcagtgacgatcggctaccggaaaaatgcactcgacgaacttgcttctcgaagaaccgattcgaatggcttcgattctcgagccatcaaagcctacgtttttttccagcaatgacgaagattgttggcacgctgggtccaaaatcacgttcggtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgccgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaactacaagttgtcaataagagcgaacacccaatttcactccaagcagattccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggtaacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctgacggacaaagataagaaggttataagcacttgggcctttcgaaacaaaatagatatcctttcactgtcatatacacgaaatgctgaagatgttcgacatgctcgtgaatttctatctaagctgggtgatcttgatcaaacacagatttttgctaagatagaaaatgtggagggaatggggcactttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67208" stop="71626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67508" g_stop="67647" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="336" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="492" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="570" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="702" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="783" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71254" g_stop="71325" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="855" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71326" i_stop="71413" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71414" g_stop="71432" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="874" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E737231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67508" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71325"/>
          <exon e_start="71414" e_stop="71432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACG-TTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAGGTTAGTTACCTATTGAATACTCGGGGATTTATTTATGAAAAAAACTGCACAGTAGTTGGTATAAATTTTTCCTTGCATTTGCTTATAGGGAATGGGCAACTTTGATG</genome_strand>
        <mrna_strand>CATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAG........................................................................................GGAATGGGGCACTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737137" ref_strand="+" ref_description="SGN-E737137 [LC08CE01]">
      <seq>cattattctactatttttctctgaactgagctcactcaccgcagtttcagtgacgatcggctaccggaaaaatgcactcgacgaacttgcttctcgaagaaccgattcgaatggcttcgattctcgagccatcgaagcctacgtttttttccagcagatgacgaagattgttggcacgctgggtccaaaatcgcgttcgggggagattatctctaattgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgccgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaggctctgagcggttatgctagacactggtggtcctgaactacaaggtgtcaataagagcgaacacccaatttcactccaggcagattccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaatagattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggtaacagaggtgaaaggagaggatgtcgtgtgcttgattagaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctgacggacagagataagaacgttataatcacttgggcctttcgagactaaatagatatcctttcactgtcatatacacaaaatgctgaagatgttcgacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67208" stop="71403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67508" g_stop="67647" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="239" r_length="99" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="337" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="493" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="571" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="703" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="784" r_length="81" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E737137" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67508" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACG-TTTTTTCCAGCA-ATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACAT</genome_strand>
        <mrna_strand>CATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCGAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTTCCAGCAGATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCGCGTTCGGGGGAGATTATCTCTAATTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAGGCTCTGAGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAACTACAAGGTGTCAATAAGAGCGAACACCCAATTTCACTCCAGGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAGATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAGGTGAAAGGAGAGGATGTCGTGTGCTTGATTAGAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAGAGATAAGAAC..............................................................................................................................................................................................................................................................................................GTTATAATCACTTGGGCCTTTCGAGACTAAATAGATATCCTTTCACTGTCATATACACAAAATGCTGAAGATGTTCGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483887" ref_strand="+" ref_description="SGN-E483887 [cSTE-11-E18]">
      <seq>tttatagcagtttcgctatctccattattttactatttctctctgaagtctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacgctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttgcagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67227" stop="70960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67527" g_stop="67647" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="169" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="266" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="364" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="520" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="598" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70660" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="655" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E483887" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67527" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTG</genome_strand>
        <mrna_strand>TCTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACGCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462373" ref_strand="+" ref_description="SGN-E462373 [cPRO-11-B9]">
      <seq>ctgaactgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcactctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatactgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggcaacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccgggacattgtacacattacatgtctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67228" stop="70991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67528" g_stop="67647" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="217" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="471" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="549" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70691" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="637" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E462373" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67528" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCC</genome_strand>
        <mrna_strand>CTGAACTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACTCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATACTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCAACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGGACATTGTACACATTACATGTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471257" ref_strand="+" ref_description="SGN-E471257 [cSTB-23-I12]">
      <seq>ctgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctggagccatcaaagcccacgttttttcctgcaatgacgaagattgtcggtacgctgggtccgaaatcacgttctgtggagattatctgtagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagaacgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67233" stop="69872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67533" g_stop="67647" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="212" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="310" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69572" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="409" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E471257" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67533" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGAT</genome_strand>
        <mrna_strand>CTGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTGGAGCCATCAAAGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGTACGCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTGTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAACGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463161" ref_strand="+" ref_description="SGN-E463161 [cPRO-13-D22]">
      <seq>tgagctcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcactctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatactgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggcaacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctcactgacaaagataagaaggttataagcagttgggccgttcgaaacaaatagatatcctttcactgtcatacacgcgaaatgctgaagatgttcgacatgctcgtgaatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67234" stop="71403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67534" g_stop="67647" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="211" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="309" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="465" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="543" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="675" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="755" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71254" g_stop="71268" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="770" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E463161" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67534" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTA</genome_strand>
        <mrna_strand>TGAGCTCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACTCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATACTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCAACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTCACTGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCAGTTGGGCCGTTCGAAAC-AAATAGATATCCTTTCACTGTCATACACGCGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTGAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464923" ref_strand="+" ref_description="SGN-E464923 [cPRO-19-F7]">
      <seq>tcactcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcactctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatactgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggcaacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67239" stop="70986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67539" g_stop="67647" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="206" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="304" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="460" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="538" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70686" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="621" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E464923" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67539" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGT</genome_strand>
        <mrna_strand>TCACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACTCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATACTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCAACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460515" ref_strand="+" ref_description="SGN-E460515 [cPRO-31-D19]">
      <seq>actcaccgcagttgcagtgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcactctgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatactgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggcaacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaatctgccaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67241" stop="70960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67541" g_stop="67647" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="204" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="458" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="536" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70660" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="592" r_length="56" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E460515" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67541" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTG</genome_strand>
        <mrna_strand>ACTCACCGCAGTTGCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACTCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATACTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCAACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAA-TCTGCCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476437" ref_strand="+" ref_description="SGN-E476437 [cSTB-44-F12]">
      <seq>tgacgatcggctaccggaaaaatgcactcgacgaacttgctccttgaagaaccgattcggatggcttcgattctggagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggtacgctgggtccgaaatcacgttctgtggagattatctgtagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagaacgaacacccaatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67258" stop="69837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67558" g_stop="67647" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="187" r_length="97" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="285" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69537" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="349" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E476437" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67558" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCAC</genome_strand>
        <mrna_strand>TGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTCCTTGAAGAACCGATTCGGATGGCTTCGATTCTGGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGTACGCTGGGTCCGAAATCACGTTCTGTGGAGATTATCTGTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAACGAACACCCAATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623730" ref_strand="+" ref_description="SGN-E623730 [88826]">
      <seq>gtgctacggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacactgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagctgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagtcgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccactttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctcactgacaaagataagaaggttataagcagttgggctgttcgaaacaaaaatagatatcctttcactgtcatacacacgaaatgctgaagatgttcgacatgctcgtgaattctatctaagctgagtgatcttaatcaacacagatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67267" stop="71403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67565" g_stop="67647" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="179" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="277" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="433" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="511" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="643" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="725" r_length="82" r_score="0.926"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71254" g_stop="71305" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="775" r_length="50" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E623730" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67565" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAAC-AAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTG</genome_strand>
        <mrna_strand>GTGCTA-CGGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACACTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCTGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTCGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACTTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTCACTGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCAGTTGGGCTGTTCGAAACAAAAATAGATATCCTTTCACTGTCATACACACGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTGAA-TTCTATCTAAGCTGAGTGATCTTAATC-AACACAGATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422578" ref_strand="+" ref_description="SGN-E422578 [STM-40-L21]">
      <seq>ggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacactgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagctgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctcactgacaaagataagaaggttataagcagttgggctgttcgaaacaaaatagatatcctttcactgtcatacacacgaaatgctgaagatgttcgacatgctcgtngatttctatctaagctgagtgatcttaatcaaacacagatttttgctaagatagaaaatgtggagggaatgggcaactttgacgagattctcggagaagctgatggcatcattctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67273" stop="71767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67573" g_stop="67647" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="172" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="270" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="426" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70193" i_length="564">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70194" g_stop="70222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="455" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="587" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="668" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71254" g_stop="71325" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="740" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71326" i_stop="71413" i_length="88">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71414" g_stop="71467" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="794" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E422578" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67573" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70194" e_stop="70222"/>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71325"/>
          <exon e_start="71414" e_stop="71467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAGGTTAGTTACCTATTGAATACTCGGGGATTTATTTATGAAAAAAACTGCACAGTAGTTGGTATAAATTTTTCCTTGCATTTGCTTATAGGGAATGGGCAACTTTGATGAGATTCTCGAAGAAGCTGATGGCATCATTCTCTCT</genome_strand>
        <mrna_strand>GGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACACTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCTGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTCACTGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCAGTTGGGCTGTTCGAAACAAAATAGATATCCTTTCACTGTCATACACACGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTNGATTTCTATCTAAGCTGAGTGATCTTAATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAG........................................................................................GGAATGGGCAACTTTGACGAGATTCTCGGAGAAGCTGATGGCATCATTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448631" ref_strand="+" ref_description="SGN-E448631 [cSTS-3-D8]">
      <seq>ggaaaaatgcactcgacgaacttgctcctcgaagaaccgattcggatggcttcgattctcgagccatcaaagcctacgttttttcctgcaatgacgaagattgtcggcacactgggtccgaaatcacgttctgtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgctgaatttcaccaagagacattggaaaatctaagggcagctgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaattacaagttgtcaataagagcgaacacccaatttcactccaagcagatgccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgagactacctctgtgtggctagaggttacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67273" stop="71005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67573" g_stop="67647" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68228" g_stop="68324" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="172" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="270" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="426" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69630" i_stop="70193" i_length="564">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70194" g_stop="70222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="455" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70604" g_stop="70705" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E448631" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67573" e_stop="67647"/>
          <exon e_start="68228" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70194" e_stop="70222"/>
          <exon e_start="70604" e_stop="70705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCTGTGAGTGAAATTCTATTGCTTCAATTTGACTTTGTTTGATTCACTGTAGATTCATGATTTTGGTCAATTTAAGTTGAGGAATTTGTGTATTTTTTGGGAGAGTTGTACTCGTAATGTGCTTGAAGTGTTTGATTTGTGGTTTATGATCTGTTATTTACTAGTAGGTAGTTGTAGCATTACTTTGGTAGTATTTTTGTTCTACGATTTCTGTTACTATATGTAGTTTTTTGTTCTGTTACTATATGTTGAGGAATTTTTGGTTTTTTTGGGGAGAATTGTTTGCGTAATGTGCTTGCAGATGCTATGAGCTTAAAGTGTTTGATTTGTGGTTTATGATCCGTTAATTTACTAGTAATTGTAGCATTACTTCTGTAGTTTTTTTGTTCTACCATTTCTGTTACTAAATGTTATTTTAATTTGTACATCGATTATAGTATTATTTTGTTTTATGCTATTTTTTTTGTATTTTATCGTGGCTTTTTTACTTCGTATTACTTTTTCCCAAACTACTTTGTTGTGTTTTTTTTTTGAGCTGAGGATGGTTATGTTGTTGTTGATCTATTAAATGATGATTTTGCAGACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</genome_strand>
        <mrna_strand>GGAAAAATGCACTCGACGAACTTGCTCCTCGAAGAACCGATTCGGATGGCTTCGATTCTCGAGCCATCAAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTTTCCTGCAATGACGAAGATTGTCGGCACACTGGGTCCGAAATCACGTTCTGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCTGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCTGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAATTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATGCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294725" ref_strand="-" ref_description="SGN-E294725 [cLET-17-I11](-)">
      <seq>aagattgttggcacgctgggtccaaaatcacgttcggtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgccgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaactacaagttgtcaataagagcgaacacccaatttcactccaagcagattccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggtaacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67949" stop="71005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68249" g_stop="68324" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="174" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="330" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70604" g_stop="70705" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="510" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E294725" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68249" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</genome_strand>
        <mrna_strand>AAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294724" ref_strand="+" ref_description="SGN-E294724 [cLET-17-I11]">
      <seq>aagattgttggcacgctgggtccaaaatcacgttcggtggagattatctctagttgccttgaatcgggaatgtctgtggcacgatttgacttttcatggggagatgccgaatttcaccaagagacattggaaaatctaagggcagccgtcaaaaaatcaaagaagctctgtgcggttatgctagacactggtggtcctgaactacaagttgtcaataagagcgaacacccaatttcactccaagcagattccttagttgtcctgacacctgatcaagataaagaggctacaccaaatctactgccaataaattttagtggcctatcaaagtcagtgaagaaaggagacactattttcattggtcagtacttgttcacgggaagtgagactacctctgtgtggctagaggtaacagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="67949" stop="71005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68249" g_stop="68324" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69269" g_stop="69366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="174" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69474" g_stop="69629" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="330" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70145" g_stop="70222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381">
            <donor d_prob="0.237" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70604" g_stop="70705" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="510" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E294724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68249" e_stop="68324"/>
          <exon e_start="69269" e_stop="69366"/>
          <exon e_start="69474" e_stop="69629"/>
          <exon e_start="70145" e_stop="70222"/>
          <exon e_start="70604" e_stop="70705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTGGTATGGTATCATATTTTAGCACTAGCTATGGGGGCAGAGTTGATGTCTGTGTAGTCTGTAGTGTTAAATTGGCCATTTGATTAACTAAAATGAATATGTTTGGGAACAAAACTTGAAACTATTGTAAAGGGAAACCTGGAGTACTAACCTCGATTATGTGCAAGTAGGGGAAGGGGCAGACCAGATTGGGTCTTATCTTGCATTCTGCAAGAGGTTGTTTCCGCAGCGTGAACCTGTGATCTCCTGGTCACACACTCACACTGAACATTGAGCCAAGGCTCCAAATGTTGTCACTTGTCAATAAGAATAAAGGGGAACTTCAGAAAACTAAAAAAGAAGCAACTAATGGACATCGAACCAGGGAAGACTTACACTAAGACATCTGCATTTTATATATTTGTGTATATATAGAGACTTTTTGTTGTTACTTTTTTCTTCCAAATAAAAGAATGCCTCTGTAATGTAAGTAAACCTGTGGAAAATATTTTCTCTCAAGTAATTTACCTGTTTTATATTTGTAAATAAAGTTGCTACTTTCATCCTACCAAGTATGGTTTGATATAATTCAGGATGGGAAATGAATTAGACAAATAGACCAGGCTTAACTGAGTGGTAAAATATGGTAGGAATAGATTTAAGTTATATATGCTGTTAGTGTAATGGTTTAGTGAATTTTAACCCGCAATAGCAGGTTAGTTTCCATTTTAATCAGTTTACAAGTTAATATGTATCAAGAGATTTACTTGTAATTACCTTACAGTGACTTGGTTGTGTAAGTATGTTTTACAATTTCAATCCATAAGACTTAAAAACGGTGTTCTTCAAAAGCTTGTTAGTAGCCTTCTGTGTGCTCCTTTGTTTCGAAAGATGCTGAGTGGCTGGAACTAAGCTGATAAAGAACATTGACACCACTGAGCTAATACTTCTGTTGTTGTGTATATTAGTGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCGGTAAGCTCGGTTGCTCCTGCTATTCCTACCAACTTCTCTGTTTATATAAGTCTGAATATATAACCTCTAAAATTTGTTATGGCCAACTATTCTCCTTCTCTTTTCAGGTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAGGTAATTTCCCTAAGGCAAAAAGTATGTCTTTTCTGGGAGTTTATTGGAACTGCACCTCCAGGCTTCCTATAGCATTACATGCATAAAAGTACATTTTGAGGTTGAATTGAGTCTTATCAGGGGAACCATAGCAGTAGGAGGATATTTTAGACTGGTGTGCTGTGCTATTCACATCATGTTAGTTCTTAAATTCGACCTTCTTACTTTTGTCCAGGGAAATTTAAGTCAGTCAATTCCTTACTTGATTATCAGCAAACAATAGCTATTAATTTGCATGGCGGTTAAGATTGTGGACACTAAAACAAGGTTGCAGTATTGTCCATAGGGGTTGGTAAACAAGAACTGGGGAATCAACTGATGACAAGTTTATCAAAAAGGAAATCCAATTTCAAAAGTTTAGAATGATAGCTGGAAAATTACATCTGAGACTGTAAACGTAGAAGCATACTGATTTTAGTTCCCATCTTTGCATGAACCATGACATGTTCTGATGCTAAATTTTCATGATTTTGCAGTCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAGGTGAGGCAGCATTGAAAAACAAATAATTTAAATGTTTGGACCAGCGAGATGATCGTTTTTATTTCATTTCAGAAATGTGAGAAAACTTTGTACCCCATCACTGTTCAATCCCCTCTACCCCTTTCCACAACACACAACGACACCAAAATAATGTGTGTGTGCGCGTTCACGCGTGTCTGTGAGAGAGGGAGAGAGAGCCAAAGCTAGAGTATGGCACTTTGCTCTCACTTGTAATAGCATAGTGAAGTTACTGTTAGAGTTACATGGGCCTTCCGTTTAGACTTTCTGCTGATGCAAGAAATCAATGTGAAAAAGAAGTGCAGCATGTGGTCAATGTTATACTAGTTAAATTTCCGCTCTCAAGAGTTCTCTACAATGCAGGTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</genome_strand>
        <mrna_strand>AAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG...........................................................................................................GTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447573" ref_strand="+" ref_description="SGN-E447573 [cSTA-27-O6]">
      <seq>gcaacctctagccacacagaggtagcagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctcactgacaaagataagaaggttataagcagttgggctgttcgaaacaaaatagatatcctttcactatcatacacgcgaaatgctgaagatgttcgacatgctcgtgaatttctatctaagctgggtgatcttaatcaaacacagatttttgctaagatagaaaatgtggagggaatgggcaactttgacgagattctcggagaagctgatggcatcattctctctcgtggaaatttagggatagatctaccacctgagaaggtgttcctatttcaaaaggcagctgttcacaggtgcaatatggctggtaaacctgctgtggtcactcgtgttgtggacagtatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="70293" stop="73438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="153" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="234" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71254" g_stop="71325" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="306" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71326" i_stop="71413" i_length="88">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71414" g_stop="71503" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="396" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71504" i_stop="73050" i_length="1547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73051" g_stop="73138" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="484" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E447573" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71325"/>
          <exon e_start="71414" e_stop="71503"/>
          <exon e_start="73051" e_stop="73138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAGGTTAGTTACCTATTGAATACTCGGGGATTTATTTATGAAAAAAACTGCACAGTAGTTGGTATAAATTTTTCCTTGCATTTGCTTATAGGGAATGGGCAACTTTGATGAGATTCTCGAAGAAGCTGATGGCATCATTCTCTCTCGTGGAAATTTAGGGATAGATCTACCACCTGAGAAGGTCAGTGAATTCTCCTCAGTCTTTTCTGTGACATATTATTGATAATGATAAAACAGCCACCTCATTAAAGTGGCATATCATTAATGACATTCAAATGATCTACCAATTCAAACATCAGATGGTACAGAGAATTTCTTTTGGGTGGACGTGAGTGAATTTCCCGTTAGGGATGAAAAGTGATATTGCGGATTATGCAAAAATAAATGGGGTCCTGTTTGACGTACGTGCATGAGGCGCTGTCTCTTACTTAGAGTACTAAAAATGTATTGTGTGCCTTGATAATTTTGTGAATTAATTCATGCTTAGATGCCACACTGTTTAATCGGAATGATTCATTGGAAGGGCGATAATACACGACTTCTTTATGTTATTGATTTAAGAAAAATGTTATAATCTACGTAAAAATGTGTTGTGATTCGAAGATCAAATTAAAGGTTGAAAAGGAAACAATAACATATGAAGGGTAATCCCACAAAGTGGGTTTGGGGAGGGTGGGGTGTGTACGTAGACCTTACCCTACCTTGTGAAGGTAGCAATGTTCTTTTCAAAAGACCCTTGGCTCAAGTAAGGTTGGAAAGGCAAAAAAAATAAAACGAAGAAAGAAAGAAAGAGATAAAAGAAAAGCAACACAGTGTTCGACAAGCAGGGCAAATGACCAATATGCCCCCATGTACACCGTGATATCTGAACACGTTCGGAAATGTTGAGGCACATATATTGAGATACATTTAAATGTGTTTTGGGTCAACAAATGAGCAAAAAGCTACCTAAATAGTATCTTAATCACATCTAATGATTGATATTCTAGTGTCAGGACCTTCCATTCCTGTCACTTAGTCCTAGATAACTTTCATCTTTCCACTTGCAGAATTCTCGAGGAGGTCACCTTTGCTCCTTAATAATTCTTATAGTTCATGCGTTCCAATGACATTTGCTCTATATGCAGTGAGTGAGAGGTTCAGCTCATAGTCACGTCAGTGAATGAATCTGACTAAGGCAGCCAAACGTCTACTTAAATTCTTGCTTTCTTCTCATTATTACATGAAGGAACAGTTGTTGCACCTAAGAACAAGCTGGAAATCAAATCAATTGCTGGAGCTTGACTTCAACTCATGGATATTAGCTCATTATTAAACATTTTCTATAACCAAGTACTAGCTTGAAAGATAGCATGGAGTTTCATTGGGAATAGAATATGGAGAAGTTGTATTGAGAAGAGTAAAGGTGGACATCATAAAACATTTTATGCTATATAAGGGTTGAGCATTGATTTGCTTACTAATTTGAAGACACATGAATAGATGCAATGCACTTAACAAGCAAAGACAGTGACACATAAAATGGAAGTCCTCTCATTGAACTATATGTGGGCGAACAATATATTTGAATAATCTACGTGTGATTGAATAGTGCCTGATGGGTCCGGTGTTGAACTTCTTTTTGCTTCATTAGACTGTTTCATGTTGACCTACCCACTGACTGTGAGGCATTTTGCAGTTATCTAGGATAGATTTCTTTCTTTCTAACCAGATTATATTAATTACCAGGTGTTCCTATTTCAAAAGGCAGCTGTTCACAGGTGCAATATGGCTGGTAAACCTGCTGTGGTCACTCGTGTTGTGGACAGTATGACTG</genome_strand>
        <mrna_strand>GTAGCAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTCACTGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCAGTTGGGCTGTTCGAAACAAAATAGATATCCTTTCACTATCATACACGCGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTGAATTTCTATCTAAGCTGGGTGATCTTAATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAG........................................................................................GGAATGGGCAACTTTGACGAGATTCTCGGAGAAGCTGATGGCATCATTCTCTCTCGTGGAAATTTAGGGATAGATCTACCACCTGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTATTTCAAAAGGCAGCTGTTCACAGGTGCAATATGGCTGGTAAACCTGCTGTGGTCACTCGTGTTGTGGACAGTATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447577" ref_strand="+" ref_description="SGN-E447577 [cSTA-27-O18]">
      <seq>gcaattctcttttccacagaggtagcagaggtgaaaggagaggatgtcgtttgcttgattaaaaattctgccaccttggccggaccattgtacacattacatgtctcccagatccgtattgagttgccaactctcactgacaaagataagaaggttataagcagttgggctgttcgaaacaaaatagatatcctttcactatcatacacgcgaaatgctgaagatgttcgacatgctcgtgaatttctatctaaactgggtgatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="70289" stop="71586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70604" g_stop="70735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="153" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71022" g_stop="71102" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="234" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71254" g_stop="71287" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="268" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E447577" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70604" e_stop="70735"/>
          <exon e_start="71022" e_stop="71102"/>
          <exon e_start="71254" e_stop="71287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAGGTCTGTTGTTACCTAATATCGAAGTCTATCATTTTGCAATCAGTGTTTCACTCTCTCTAAATTTATGCCACATCATATTGGTCCGAGAGACTCCAAGTATTTTGTGTAGGCAGTACGAAAAACTAAATACTTAAGATTATTTTGGGAAGGACAGTTTGTTTGCTCATTAAGGTTCACATTGTACAGTTTAAAAACAACTCTGCAGAACTTATTGGTCAAATTTCGTTTAGAACTATGATACTCTCTAATGGTAAATTTTTCACTGTATATCTTGTAATTATTTTAGGTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACATGTAAGGCTATTCTACAGAATTCTACTTTCCACTTTATTAATTTCAACATTTCCCTCACCTACGTAAGATCTGGATTACTCCTATGCGATCACTTCAGAAGTGAAGAAGCATATCTTGTAACAATCTAGTGGTTCTTCATGTTCTTGTTCAGGCTCGTGAATTTCTATCTAAGCTGGGTGATCTTG</genome_strand>
        <mrna_strand>GTAGCAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTCACTGACAAAGATAAGAAG..............................................................................................................................................................................................................................................................................................GTTATAAGCAGTTGGGCTGTTCGAAACAAAATAGATATCCTTTCACTATCATACACGCGAAATGCTGAAGATGTTCGACAT.......................................................................................................................................................GCTCGTGAATTTCTATCTAAACTGGGTGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338391" ref_strand="+" ref_description="SGN-E338391 [cTOE-15-E21]">
      <seq>aaaatggggaatatatgctaaatacttgtggtaggtataaacgtgccttttttgtgcttgtctccaagatgcttcatatcaattttctttcatcccaggtagtgatgcaattcttctaggtgcagagaccctgagaggtctatatcctgttgagactatttccactgttggtaaaatttgtgcagaggcagaaaaggtttataatcaagatgtctattttaagagggctgttaagtgtgtgggagaaccaatgactcacttggaatctattgcttcctcagcggtacgcgctgccatcaaggtcaaggcatctgttattatctgcttcacttcttcagggagagctgcgagattgatagctaagtataggccaccgatgccagttttatctgttgtcattcctcgtctcaagacaaaccaactgcgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagaggaattttccccatccttgcagatccaagacatccggctgagtccgcaaatgcaactgatgagtcgatattgaaggttgcactagaccatgggaaaacagctggtgttataaaaccacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="72959" stop="77472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73259" g_stop="73445" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73446" i_stop="74581" i_length="1136">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74582" g_stop="74677" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="283" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74795" g_stop="74862" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="351" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75039" g_stop="75138" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="451" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77087" g_stop="77172" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="597" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E338391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73259" e_stop="73445"/>
          <exon e_start="74582" e_stop="74677"/>
          <exon e_start="74795" e_stop="74862"/>
          <exon e_start="75039" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGGAATATATGCTAAATACTTGTGGTAGGTATAAACGTGCCTTTTTTGTGCTTGTCTCCAAGATGCTTCATATCAATTTTCTTTCATCCCAGGTAGTGATGCAATTCTTCTAGGTGCAGAGACCCTGAGAGGTCTATATCCTGTTGAGACTATTTCCACTGTTGGTAAAATTTGTGCAGAGGTAAATCTTACCTCGTTGCTGTTCTACATATGCCTTATGCCTACCATTGTGAATTCATTGTCAATGGACCCCTCATCGTCTTCTTTGAATCTTCTTTTCCCAGTTATGTCATTTGTTCTTTATACTATAACACTGTAATCATCAACCTTCAGAGTACAATTTCTACTGACTCAATGTCACATTTTTTGTAAGATTGAACAGTATCATATATATGGAGCACAAAGTACACCTAATATCAGAAATAGCAGTTAATAGAATAATGTACTCCTGTGTTGATGCCATATAAAGTAAAAGCTGTGTTGACTTGACGTATTACCATGATTGTGGTCCTACCTTACAAAAAGCACTATTATGTTGAATTCAATGTTTTTTCTTTATTCATAGTAGAACTGTTAAAATTCATTCTGAAGATCAGATAACTTTTCTAAAGCATACCCCCTAAAGTGAAATTGAGTGCGCCAAAAGCACTTTAAAATCATGTATAGTGAAAGTTCTAGATGTTTGAAAGGATTTCAGTTCATAAGTGGTGAAGTCTTAACATACATCAAAGGTACATGGATAGGCTTGCAGTAAGTAATTTTAAATGGCTCATGCTCAGTGCAAGTTGTTGGGGACAATCAATTGCTGCAATGGTGTGAATTAGTCATGCAGCTATGGAAGATATGAATTAGGAAACGTATTTAACTAGACCTATCTTCTCCATCTATTTTTCTTTTAAGGTCCTCTTCGGTGATGAGTTCACTATGCAACGAAGTGAAATACGAAGAGAAGTTCAATCTCTAGCTAAACTCGGATATACCACGGTTCAAGTGTATCTTCTACTACATTTTGTTGGGTAGGAGATGAATAACCTACTAAAGGCTGTGAATTTGGTTAATGACGTGCTAGTTAAGCCAGTACATTTTTCTAGTCAAGTTTGTGTTTAGCCAAAATGGCACAGGAGAGGAACAGATCTTTAACCAATCAATCATAATTTACATTGTGGCATAACCTTATCTTTTTGTGTTTCATATTAGCCTTTTAAAATTCACTTTGTGCCTTCCAAGGCGGCGTCTTGTTGATTTCAATGTAGTCAGATGATAATTCTGAGTTTCTCTTGTATATTTTTACTTCTAAAATTAGTTCCACCATTCCAGGCAGAAAAGGTTTATAATCAAGATGTCTATTTTAAGAGGGCTGTTAAGTGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCGGTATGTTGTTTCTGTGCTCATGTTAAGTTTTTGGTTAGGTTGGAGGAAACGGCGTCATAGACTTTAAGATTCTAGTATTGACATGAATACTGTCTGTTCTGCTTTTATTTTATTAAGGTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAGGTCTCTCTTTTCTTCTCTCTCTCTCCAAACATCATATTTGCTATCCATTGATGTAAATTGTGTATATCTGTCAAAGACATCCTTACCAGACCTTCTCATCAAAGAATGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGA</genome_strand>
        <mrna_strand>AAAATGGGGAATATATGCTAAATACTTGTGGTAGGTATAAACGTGCCTTTTTTGTGCTTGTCTCCAAGATGCTTCATATCAATTTTCTTTCATCCCAGGTAGTGATGCAATTCTTCTAGGTGCAGAGACCCTGAGAGGTCTATATCCTGTTGAGACTATTTCCACTGTTGGTAAAATTTGTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAAAGGTTTATAATCAAGATGTCTATTTTAAGAGGGCTGTTAAGTGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCG.....................................................................................................................GTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG................................................................................................................................................................................ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620118" ref_strand="+" ref_description="SGN-E620118 [70815]">
      <seq>tgtgtgggagaaccaatgactcacttggaatctattgcttcctctgcggtacgtgctgccattaaggtcaaggcatctgttattatctgcttcacttcttcagggagagctgcgagattgatagctaagtataggccaccgatgccagttttgtctgttgtcattcctcgtctcaagacaaaccaactccgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagagggattttccccatccttgcagatccaagacatccggctgagtccacaaatgcaaccgatgagtcgatattgaaggttgcactagaccatgggaaaacagctggtgttataaagccgcatgaccgagttctcggtttccagaaagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="74330" stop="77499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74630" g_stop="74677" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74795" g_stop="74862" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="116" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75039" g_stop="75138" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="216" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="276" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77087" g_stop="77199" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="389" r_length="113" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E620118" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74630" e_stop="74677"/>
          <exon e_start="74795" e_stop="74862"/>
          <exon e_start="75039" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCGGTATGTTGTTTCTGTGCTCATGTTAAGTTTTTGGTTAGGTTGGAGGAAACGGCGTCATAGACTTTAAGATTCTAGTATTGACATGAATACTGTCTGTTCTGCTTTTATTTTATTAAGGTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAGGTCTCTCTTTTCTTCTCTCTCTCTCCAAACATCATATTTGCTATCCATTGATGTAAATTGTGTATATCTGTCAAAGACATCCTTACCAGACCTTCTCATCAAAGAATGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGG</genome_strand>
        <mrna_strand>TGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCTGCG.....................................................................................................................GTACGTGCTGCCATTAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG................................................................................................................................................................................ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTGTCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTCCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGGATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCACAAATGCAACCGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAGCCGCATGACCGAGTTCTCGGTTTCCAGAAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560143" ref_strand="-" ref_description="SGN-E560143 [19751]">
      <seq>accaatgactcacttggaatctattgcttcctctgcggtacgtgctgccattaaggtcaaggcatctgttattatctgcttcacttcttcagggagagctgcgagattgatagctaagtataggccaccgatgccagttttgtctgttgtcattcctcgtctcaagacaaaccaactccgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagagggattttccccatccttgcagatccaagacatccggctgagtccacaaatgcaaccgatgagtcgatattgaaggttgcactagaccatgggaaaacagctggtgttataaagccgcatgaccgagttgttgttttccagaaagttggtgactcatctgtggtgaagatcattgagcttgaaaattaggctagtacatctttgtatgtttcacttggcccgttcaacatcagagcattctcaagttaacagaatgcatgaaaatcatctaatggagctataaaaccaagttgatccatggctgtaataattgctcctgacagatgtaaatcctctgtaagtaacactaaccagtttatgttgtaagaatattatttttaaggcagtgtcctctttaaccaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="74341" stop="77738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74641" g_stop="74677" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117">
            <donor d_prob="0.823" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74795" g_stop="74862" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75039" g_stop="75138" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="205" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="265" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77087" g_stop="77437" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="630" r_length="365" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="648"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E560143" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560143" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74641" e_stop="74677"/>
          <exon e_start="74795" e_stop="74862"/>
          <exon e_start="75039" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCGGTATGTTGTTTCTGTGCTCATGTTAAGTTTTTGGTTAGGTTGGAGGAAACGGCGTCATAGACTTTAAGATTCTAGTATTGACATGAATACTGTCTGTTCTGCTTTTATTTTATTAAGGTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAGGTCTCTCTTTTCTTCTCTCTCTCTCCAAACATCATATTTGCTATCCATTGATGTAAATTGTGTATATCTGTCAAAGACATCCTTACCAGACCTTCTCATCAAAGAATGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATG-------T------TTC-AC-TCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAA</genome_strand>
        <mrna_strand>ACCAATGACTCACTTGGAATCTATTGCTTCCTCTGCG.....................................................................................................................GTACGTGCTGCCATTAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG................................................................................................................................................................................ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTGTCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTCCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGGATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCACAAATGCAACCGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAGCCGCATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACTCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTTGGCCCGTTCAACATCAGAGCATTCTCAAGTTAACAGAATGCATGAAAATCATCTAATGGAGCTATAAAACCAAGTTGATCCATGGCTGTAATAATTGCTCCTGACAGATGTAAATCCTCTGTAAGTAACACTAACCAGTTTATGTTGTAAGAATATTAT-TTTTAAGGCAGTGTCCTCTTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732869" ref_strand="+" ref_description="SGN-E732869 [LB03BE01]">
      <seq>cgcttcttcagggagagctgcgagattgatagctaagtataggccaccgatgccagttatctgttgtcattcctcgtctcaagacaaaccaactgcgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagaggaattttccccatccttgcagatccaagacatccggctgagtccgcaaatgcaactgatgagtcgatattgaaggttgcactagaccatgggaaaacagctggtgttataaaaccacatgaccgagttgttgttttccagaaagttggtgacgcatctgtggtgaagatcattgagcttgaaaattaggctagtacatctttgttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgtaagattattatcttttaagacgctgtcatctttaacaaatctctttttttttctctaatccatatgttgtgtaggctgtgaagggtgtcaacctactttgcttcactatttttgtgtatcaaatagtattatatatatcttcaggtaaataagtagttataattgctatcttatgaatggagtagtgatatataagaaccttcttttcttgatgataacaaactcttcataggaagattgtcaaacatttgttctaggagagtgaaatcatcaagaattccagattaattcaagagtaaaccttctattagtgaagtcttatacctttaagggttgtttggttggaaacaagttattcaggattaattgttttccgataaattattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="74539" stop="78087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74839" g_stop="74862" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75039" g_stop="75138" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="122" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="182" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77087" g_stop="77253" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="349" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77254" i_stop="77324" i_length="71">
            <donor d_prob="0.280" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77325" g_stop="77787" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="813" r_length="464" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E732869" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74839" e_stop="74862"/>
          <exon e_start="75039" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77253"/>
          <exon e_start="77325" e_stop="77787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTTCAGGGAGAGCTGCGAGGTCTCTCTTTTCTTCTCTCTCTCTCCAAACATCATATTTGCTATCCATTGATGTAAATTGTGTATATCTGTCAAAGACATCCTTACCAGACCTTCTCATCAAAGAATGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAAATCTCTTTTTTTTTCTCTAATCCATATGTTGTGTAGGCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAGGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCAAGATTAATTCAAGAGTAAACCTTCTATTAGTGAAGTCGTATACCTTTAGGGGTTGTTTGGTTGGAAACAAGTTATTCAGGATTAATTG-TTTCGGATAAATTATTCCA</genome_strand>
        <mrna_strand>CGCTTCTTCAGGGAGAGCTGCGAG................................................................................................................................................................................ATTGATAGCTAAGTATAGGCCACCGATGCCAG--TTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTT.......................................................................GTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAAATCTCTTTTTTTTTCTCTAATCCATATGTTGTGTAGGCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAGGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCCAGATTAATTCAAGAGTAAACCTTCTATTAGTGAAGTCTTATACCTTTAAGGGTTGTTTGGTTGGAAACAAGTTATTCAGGATTAATTGTTTTCCGATAAATTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615866" ref_strand="+" ref_description="SGN-E615866 [65669]">
      <seq>tgccatcacattctgaagtccattctctagtgcagaaaacttaatttataaccttttactgatgacgcagattgatagctaagtataggccaccgatgccagttttgtctgttgtcattcctcgtctcaagacaaaccaactccgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagagggattttccccatccttgcagatccaagacatccggctgagtccacaaatgcaaccgatgagtcgatattgaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="74669" stop="77428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74969" g_stop="75138" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="230" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77087" g_stop="77128" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="272" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E615866" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74969" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTT</genome_strand>
        <mrna_strand>TGCCATCACATTCTGAAGTCCATTCTCTAGTGCAGAAAACTTAATTTATAACCTTTTACTGATGACGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTGTCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTCCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGGATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCACAAATGCAACCGATGAGTCGATATTGAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302138" ref_strand="+" ref_description="SGN-E302138 [cLEW-19-J11]">
      <seq>caccgatgccagttttatctgttgtcattcctcgtctcaagacaaaccaactgcgctggacattcagtggtgcatttcaggctaggcagtctcttattgttagaggaattttccccatccttgcagatccaagacatccggctgagtccgcaaatgcaactgatgagtcgatattgaaggttgcactagaccatgggaaaacagctggtgttataaaaccacatgaccgagttgttgttttccagaaagttggtgacgcatctgtggtgaagatcattgagcttgaaaattaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgctgtgaagggtgtcaacctactttgcttcactatttttgtgtatcaaatagtattatatatatcttcaagtaaataagtagttataattgctatcttatgaatggagtagtgatatataagaaccttcttttcttgatgataacaaactcttcataggaagattgtcaaacatttgttctaggagagtgaaatcatcaagaattcaagattaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="74759" stop="77999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75059" g_stop="75138" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75736" g_stop="75795" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="140" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77087" g_stop="77239" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="293" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77240" i_stop="77324" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77325" g_stop="77371" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="340" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77372" i_stop="77473" i_length="102">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77474" g_stop="77700" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="567" r_length="227" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E302138" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75059" e_stop="75138"/>
          <exon e_start="75736" e_stop="75795"/>
          <exon e_start="77087" e_stop="77239"/>
          <exon e_start="77325" e_stop="77371"/>
          <exon e_start="77474" e_stop="77700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAGGTAATCATGTTTCTTAAAGGACTTCCTTTTTTTTAAAAGAAAAATCAACTTATATGTACATTGATATTACCATCATGTTACCTGTGCCAAATTGAAGTGCATCTTTTACCTATATGTAGAACAAGTTAAGATCCTACTATATGGATTTGCCCCTAACAAAATGTGGTACATCTCCTTTCACTAATTGATGATATATTATTCTTCGGACTAGATGGTTCAATAATGACACATCTTTATTAGAGATAATCTGATTCATCATACCTCCTATGAATGTATGCATTATTTTCTGGGCAGATGCTAAGGCGGTGCTTGCTCGAAAATGAAACCCAATTTTTGCAAAAATTGTGTTTTGAAAAAACACCCAATAATTCTGTTGTGAAGCAACTATTTGAATCCTGTTAGACTGTCTATTTTCCCAACTACTACTTAATTACTCAGACTGATGCTTGGTGTTAGAAAAGGTTTATTGGGATGCTAATAAAGCTCTTCTTCTGATGCTTTCTTTTTTCATTCTTTAATTCATATTATCATAGATGATGTATCATTGGCAAATCGAAAATGAAACTGATTTTATTGCATTGATGACTTAAATGACAGGCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCGGTATGAAATTTTTTCATCTGTTCCTCCCTAAATAAGTGATTTCTTTCTAGAGCTACTGCAGTTCTGATTAAAAGATTATGTTAACCAACATGGAATTGTGAAGTGCGTGATTAACAATATCGCTTGACCTCATCTTGTATTAGTTCTTCTGTATTATTTTATGAGCAAAATATTAAAGGTAAGAGAATACAATGACAACTACACATCATTCAAGCTAGTTGTGGTCGGCTATATGTATCCTTATTACCCCCTCTGTTCGCTTTATTTGACACTACTTCTTTATTAGTCCGTTTAAAAAAGAATAACACACTGCTTTTATAGCTACACACGTGTTATTGCATGGTTTAGATGACAAGCTTTAAAGTCCCTTTTTCCCTTAACCGTCGTGCCGAGTTGAACTATGACAAACAAAGTGGAATAGAGGTAGTACATATTTTGATCCATTGTTGACTCATTTTATTCCAACATTATATAATTCTGGTTCTCCAACAATAAAATTCTCCACAAACATTAGACCTAATGCGTATGGAACTACATGGGTAAGACTTAATGTCATCTAGTTAGTATATATTGGCCACATGATTTTTTTCAGTTGTGTTTTGTCTTGCTCGAGTTTGCCTTTTCTGAAGACATATTCAGTTAAATAGTCACCAGAAGACTTGCCATAAAGTCATAATCAAAATCTAGTTGAGTAAGTTCTGGTCATTGGAATCTTGTCAGAAAATCTTCAGTCATGGACATCTCGTCAGGAAAGTTCCAATTTTCAGAAACTTGCCAAAAAATCGACTGGCGGAAAATGACTAATATTGATTGAAAAAGGTTTGGAAATAGTGGTGGCTTTAGAACTGTCCCTAAAGAAACCGTTATATGACTAGATCAGACACTGGAAAGGAGTGTATATGCTGCTGGAAGAGTCACGAAAAGAGACAGGGCGATCAGTTACTGGATATATCTTTCTTAAAATGTTAAGAATAAGAAAGAAAAACAAGGTGAATGAAATGGAAGTTACTTATGCTGCTGTTTAGATTGTAGAGCCTTTGTACCATGTGAGTAAAATAAAAAGTTCAAGACGAAAGATAATTTAAGATGATGTATAAATAAGTTGATAAGCATAAAAGATAAAAATGTCATATATAACTTACATTTAATCCGAAAGGGAAAAGAACTTTGGGAAGTGCATGATAGTCCTTCTGGCCTTTATAACTTCATAGTTACTGTAACCTTCTTTCTTCTTGTTAGTGTGTTCGGTGTAGCGTGGCGAGAACATTGACTTTGTTCTTTCCTTCTTCAGGCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAAATCTCTTTTTTTTTCTCTAATCCATATGTTGTGTAGGCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAGGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCAAGATTAATTCAAGAGTAAAC</genome_strand>
        <mrna_strand>CACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAG.....................................................................................GTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCT......................................................................................................GCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAAGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCAAGATTAATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345931" ref_strand="+" ref_description="SGN-E345931 [cTOF-24-N7]">
      <seq>aaggttgcactagaccatgggaaaacagctggtgttataaaaccacatgaccgagttgttgttttccagaaagttggtgacgcatctgtggtgaagatcattgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctggtataattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76823" stop="77651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77123" g_stop="77351" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E345931" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77123" e_stop="77351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTC</genome_strand>
        <mrna_strand>AAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGGTATAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342059" ref_strand="+" ref_description="SGN-E342059 [cTOF-10-N5]">
      <seq>gctggtgttataaaaccacatgaccgagttgttgttttccagaaagttggtgacgcatctgtggtgaagactcattgagcttgaaaattaggctagtaccatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgtaagaatattatcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76850" stop="77719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77150" g_stop="77426" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E342059" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77150" e_stop="77426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGA-TCATTGAGCTTGAAAATTAGGCTAGTA-CATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTC</genome_strand>
        <mrna_strand>GCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGACTCATTGAGCTTGAAAATTAGGCTAGTACCATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGAATATTATCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222158" ref_strand="+" ref_description="SGN-E222158 [cLEL-16-B6](-)">
      <seq>tgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76924" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77397" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="176" polyA_stop="193"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E222158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222168" ref_strand="+" ref_description="SGN-E222168 [cLEL-16-D4](-)">
      <seq>tgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76924" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77397" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="176" polyA_stop="193"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E222168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223495" ref_strand="+" ref_description="SGN-E223495 [cLEL-14-A5](-)">
      <seq>tgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76924" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77397" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="176" polyA_stop="193"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E223495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238670" ref_strand="+" ref_description="SGN-E238670 [cLEL-9-O10](-)">
      <seq>tgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76924" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77397" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="177" polyA_stop="193"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E238670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239195" ref_strand="+" ref_description="SGN-E239195 [cLEL-9-O10](-)">
      <seq>tgagcttgaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttaagttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76924" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77397" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="177" polyA_stop="193"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E239195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>TGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223123" ref_strand="+" ref_description="SGN-E223123 [cLEL-14-C5](-)">
      <seq>gcttaaaaattaggctagtacatctttgtatgtttcactcagagcattctcaagttaacagaatgcatgaaaaccatctaatggagctataaaaccaggttgatccatggctgtaataattgctccggaccgatgtaaatcctctgtaagtaatgcttaccactttnagttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="76927" stop="77703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77227" g_stop="77397" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="174" polyA_stop="190"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E223123" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77227" e_stop="77397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTT</genome_strand>
        <mrna_strand>GCTTAAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTNAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687905" ref_strand="+" ref_description="SGN-E687905 [T3_tus_81_J10]">
      <seq>gagggaaaccaaacattgttcctagttgtattagatcagaaaattacatgatcactttcgaggttgaggaagaaaagtttcctttctttggtaagaagtatcaattgaagtttgcaagtgacatctctgctgaaacccaatgtttggttcattttccaagcctgctcaggttggcgagagaggctggccttgagcacacggagattcagaacttgacagatttttatgatgataacaggtaatagattgtaacttacaacttcaccatcatggctgtttcattttgcttgtttaccatcttaatctatcatatgaaattacctgaatttttatcacatcattgatgaagccatgaaggtaaagtgatgattctcttgaagtttaactttaaaatgtgatagtttattgcatagggaatttatattcttcatggcaatgcacatgccaaaaagtagtgtatacatgccttgcatagtactcagatggatgtattattgggtgggaacccaacttcagatcaacttttatcatgttgtgaagtgttcagtctttgtctcaccaagtacaccataatatttcctagcaagtgcggaagaaaatggtttcccatcacttgatcatttttcctaccttttaagaatttaatgggtcacttatagtatactgattttatttttctaattatgtctacttttccttttcttttggttgttaaaatttattgatttctttagaaggtttatgagggttgttagctggacaggaataactccagcatggaattattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="81850" stop="79901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81554" g_stop="81479" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81478" i_stop="81388" i_length="91">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81387" g_stop="81295" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="169" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81294" i_stop="80821" i_length="474">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80820" g_stop="80201" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="789" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E687905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81554" e_stop="81479"/>
          <exon e_start="81387" e_stop="81295"/>
          <exon e_start="80820" e_stop="80201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAAACCAAACATTGTTCCTAGTTGTATTAGATCAGAAAATTACATGATCACTTTCGAGGTTGAGGAAGAAAAGTATGGAATCCACTTGGCACCCACTTATGTTTGTTCTTAATGCGTCTCTTTTGAGCGATTAATTATGTTTATGTTGTGAATTGGATTTCAGGTTTCCTTTCTTTGGTAAGAAGTATCAATTGAAGTTTGCAAGTGACATCTCTGCTGAAACCCAATGTTTGGTTCATTTTCCAAGCCTGCTCAGGTTAATGCAGCAATATTCCCTGTCAAATTTCAATTGGGTTTGTTGTGTTCTGTTACCTTCACCCCACCCCATATCTCTCTCTATATTTCACTTGAGACCCCTTTGTTGAACTCCACTTTTCTTAGTAAGCCCTGCCATCAGGGAGGAACCCTGACATGCCTCCAATCATGATCCACTATGATAGTTCTATTTTTCCAATGTTCAACTATTTGAAATCACGCCTTTTCAGATATGGGAATAACCAAACTTGTTCTCGTAATGTGAATTTGGGTATTCTATTTCACAATGTTCTACAGATCTAGTAGGTTATCTGTATGCTTCTTTGGTTTGTTTGTGTGATTTTTTGAGTTTCAGATGTCAACATTTGTGCTCTTGCATTTCCAAAATGGGAAGAAATATTTTAGCTTAGCTTATTTTCTTATCCTGTCAATGTAAATAAATCCTATAATTAACTTGTAAAGTCATATTCCTCAGGTTGGCGAGAGAGGCTGGCCTTGAGCACACGGAGATTCAGAACTTGACAGATTTTTATGATGATAACAGGTAATAGATTGTAACTTACAACTTCACCATCATGGCTGTTTCATTTTGCTTGTTTACCATCTTAATCTATCATATGAAATTACCTGAATTTTTATCACATCATTGATGAAGCCATGAAGGTAAAGTGATGATTCTCTTGAAGTTTAACTTTAAAATGTGATAGTTTATTGCATAGGGAATTTATATTCTTCATGGCAATGCACATGCCAAAAAGTAGTGTATACATGCCTTGCATAGTACTCAGATGGATGTATTATTGGGTGGGAACCCAACTTCAGATCAACTTTTATCATGTTGTGAAGTGTTCAGTCTTTGTCTCACCAAGTACACCATAATATTTCCTAGCAAGTGCGGAAGAAAATGGTTTCCCATCACTTGATCATTTTTCCTACCTTTTAAGAATTTAATGGGTCACTTATAGTATACTGATTTTATTTTTCTAATTATGTCTACTTTTCCTTTTCTTTTGGTTGTTAAAATTTATTGATTTCTTTAGAAGGTTTATGAGGGTTGTTAGCTGGACAGGAATAACTCCAGCATGGAATTATTGC</genome_strand>
        <mrna_strand>GAGGGAAACCAAACATTGTTCCTAGTTGTATTAGATCAGAAAATTACATGATCACTTTCGAGGTTGAGGAAGAAAA...........................................................................................GTTTCCTTTCTTTGGTAAGAAGTATCAATTGAAGTTTGCAAGTGACATCTCTGCTGAAACCCAATGTTTGGTTCATTTTCCAAGCCTGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGAGAGAGGCTGGCCTTGAGCACACGGAGATTCAGAACTTGACAGATTTTTATGATGATAACAGGTAATAGATTGTAACTTACAACTTCACCATCATGGCTGTTTCATTTTGCTTGTTTACCATCTTAATCTATCATATGAAATTACCTGAATTTTTATCACATCATTGATGAAGCCATGAAGGTAAAGTGATGATTCTCTTGAAGTTTAACTTTAAAATGTGATAGTTTATTGCATAGGGAATTTATATTCTTCATGGCAATGCACATGCCAAAAAGTAGTGTATACATGCCTTGCATAGTACTCAGATGGATGTATTATTGGGTGGGAACCCAACTTCAGATCAACTTTTATCATGTTGTGAAGTGTTCAGTCTTTGTCTCACCAAGTACACCATAATATTTCCTAGCAAGTGCGGAAGAAAATGGTTTCCCATCACTTGATCATTTTTCCTACCTTTTAAGAATTTAATGGGTCACTTATAGTATACTGATTTTATTTTTCTAATTATGTCTACTTTTCCTTTTCTTTTGGTTGTTAAAATTTATTGATTTCTTTAGAAGGTTTATGAGGGTTGTTAGCTGGACAGGAATAACTCCAGCATGGAATTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328356" ref_strand="+" ref_description="SGN-E328356 [cTOC-21-A10]">
      <seq>agggaaaccaaacattgttcctagttgtattagatcagaaaattacatgatcactttcgaggttgaggaagaaaagtttcctttctttggtaagaagtatcaattgaagtttgcaagtgacatctctgctgaaacccaatgtttggttcattttccaagcctgctcaggttggcgagagaggctggccttgagcacacggagattcagaacttgacagatttttatgatgataacaggtaatagattgtaacttacaacttcaccatcatggctgtttcattttgcttgtttaccatcttaatctatcatatgaaattacctgaatttttatcacatcattgatgaagccatgaaggtaaagtgatgattctcttgaagtttaactttaaaatgtgatagtttattgcatagggaatttatattcttcatggcaatgcacatgccaaaaagtagtgtatacatgccttgcatagtactcagatggatgtattattgggtgggaacccaacttcagatcaacttttatcatgttgtgaagtgttcagtctttgtctcaccaagtacaccataatatttcctagcaagtgcggaagaaaatggtttcccatcacttgatcatttttcctaccttttaagaatttaatgggtcacttatagtatactgattttatttttctaattatgtctacttttccttttcttttgggtggtaaaatttattgatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="81850" stop="79958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81553" g_stop="81479" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81478" i_stop="81388" i_length="91">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81387" g_stop="81295" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="168" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81294" i_stop="80821" i_length="474">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80820" g_stop="80258" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="731" r_length="563" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E328356" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81553" e_stop="81479"/>
          <exon e_start="81387" e_stop="81295"/>
          <exon e_start="80820" e_stop="80258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAACCAAACATTGTTCCTAGTTGTATTAGATCAGAAAATTACATGATCACTTTCGAGGTTGAGGAAGAAAAGTATGGAATCCACTTGGCACCCACTTATGTTTGTTCTTAATGCGTCTCTTTTGAGCGATTAATTATGTTTATGTTGTGAATTGGATTTCAGGTTTCCTTTCTTTGGTAAGAAGTATCAATTGAAGTTTGCAAGTGACATCTCTGCTGAAACCCAATGTTTGGTTCATTTTCCAAGCCTGCTCAGGTTAATGCAGCAATATTCCCTGTCAAATTTCAATTGGGTTTGTTGTGTTCTGTTACCTTCACCCCACCCCATATCTCTCTCTATATTTCACTTGAGACCCCTTTGTTGAACTCCACTTTTCTTAGTAAGCCCTGCCATCAGGGAGGAACCCTGACATGCCTCCAATCATGATCCACTATGATAGTTCTATTTTTCCAATGTTCAACTATTTGAAATCACGCCTTTTCAGATATGGGAATAACCAAACTTGTTCTCGTAATGTGAATTTGGGTATTCTATTTCACAATGTTCTACAGATCTAGTAGGTTATCTGTATGCTTCTTTGGTTTGTTTGTGTGATTTTTTGAGTTTCAGATGTCAACATTTGTGCTCTTGCATTTCCAAAATGGGAAGAAATATTTTAGCTTAGCTTATTTTCTTATCCTGTCAATGTAAATAAATCCTATAATTAACTTGTAAAGTCATATTCCTCAGGTTGGCGAGAGAGGCTGGCCTTGAGCACACGGAGATTCAGAACTTGACAGATTTTTATGATGATAACAGGTAATAGATTGTAACTTACAACTTCACCATCATGGCTGTTTCATTTTGCTTGTTTACCATCTTAATCTATCATATGAAATTACCTGAATTTTTATCACATCATTGATGAAGCCATGAAGGTAAAGTGATGATTCTCTTGAAGTTTAACTTTAAAATGTGATAGTTTATTGCATAGGGAATTTATATTCTTCATGGCAATGCACATGCCAAAAAGTAGTGTATACATGCCTTGCATAGTACTCAGATGGATGTATTATTGGGTGGGAACCCAACTTCAGATCAACTTTTATCATGTTGTGAAGTGTTCAGTCTTTGTCTCACCAAGTACACCATAATATTTCCTAGCAAGTGCGGAAGAAAATGGTTTCCCATCACTTGATCATTTTTCCTACCTTTTAAGAATTTAATGGGTCACTTATAGTATACTGATTTTATTTTTCTAATTATGTCTACTTTTCCTTTTCTTTTGGTTGTTAAAATTTATTGATTTCTTT</genome_strand>
        <mrna_strand>AGGGAAACCAAACATTGTTCCTAGTTGTATTAGATCAGAAAATTACATGATCACTTTCGAGGTTGAGGAAGAAAA...........................................................................................GTTTCCTTTCTTTGGTAAGAAGTATCAATTGAAGTTTGCAAGTGACATCTCTGCTGAAACCCAATGTTTGGTTCATTTTCCAAGCCTGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCGAGAGAGGCTGGCCTTGAGCACACGGAGATTCAGAACTTGACAGATTTTTATGATGATAACAGGTAATAGATTGTAACTTACAACTTCACCATCATGGCTGTTTCATTTTGCTTGTTTACCATCTTAATCTATCATATGAAATTACCTGAATTTTTATCACATCATTGATGAAGCCATGAAGGTAAAGTGATGATTCTCTTGAAGTTTAACTTTAAAATGTGATAGTTTATTGCATAGGGAATTTATATTCTTCATGGCAATGCACATGCCAAAAAGTAGTGTATACATGCCTTGCATAGTACTCAGATGGATGTATTATTGGGTGGGAACCCAACTTCAGATCAACTTTTATCATGTTGTGAAGTGTTCAGTCTTTGTCTCACCAAGTACACCATAATATTTCCTAGCAAGTGCGGAAGAAAATGGTTTCCCATCACTTGATCATTTTTCCTACCTTTTAAGAATTTAATGGGTCACTTATAGTATACTGATTTTATTTTTCTAATTATGTCTACTTTTCCTTTTCTTTTGGGTGGTAAAATTTATTGATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327175" ref_strand="+" ref_description="SGN-E327175 [cTOC-18-P9]">
      <seq>tgaacgagagcagcagggtttttgtgtgggttttagaggcgatgatgatgatggcgaattcattcccgattcacagacctgccgagtcaactcaccatcgacttctcgatttcgtcaaaaatgtgcttatcggtatcttcgtctccccatatgccactgtatgtgatatgtattgtggaaaagtacctgatgtggagaagtgggatgaagctcaaattggtcactatattggcattgatgtggaagcttcgggagtgaatgaagtgaaggaagcgtgggagagtcagcggaaggcttacacatctgagttcattgagctcgatctttgtattgaagatatagaatcattttggaaggacaaagaaaagccagccgatgttgttttctgcatgcacaatttacaggcgtgctttgatagtgaagagaaagccaggaggctattgcataatgtatccactttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="85368" stop="82618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85068" g_stop="84911" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84910" i_stop="84611" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84610" g_stop="84532" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="237" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84531" i_stop="83808" i_length="724">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83807" g_stop="83713" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="332" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83712" i_stop="83137" i_length="576">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83136" g_stop="83065" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83064" i_stop="82978" i_length="87">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82977" g_stop="82918" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="464" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E327175" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85068" e_stop="84911"/>
          <exon e_start="84610" e_stop="84532"/>
          <exon e_start="83807" e_stop="83713"/>
          <exon e_start="83136" e_stop="83065"/>
          <exon e_start="82977" e_stop="82918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGAGAGCAGTAGGGTTTTTGTGTGGGTTTTAGAGGCGATGATGATGATGGCGAATTCATTCCCGATTCACAGACCTGCCGAGTCAACTCACCATCGACTTCTCGATTTCGTCAAAAATGTGCTTATCGGTATCTTCGTCTCCCCATATGCCACTGTATGTACTCTTTACTCTCACTACTATGCTTCACTTGTAATGTTATGGCGGAGATACACCTTCGTTTTGCTCAAAATCTCTACTTGTAGTTGAAAATTCACTTGATATGTATGGTTACTTGATACCTGTGGGAGGTTGCAGCGTATTAGGTAGAATTAGTCAATTTTTATGTTTTTTTTTTTAAAAAAAAACATGAATCAAGTAAAATGCAGTTTCTAGAATGTAGAACTCATAAATTCAAAATTCTAGTTCGGCGGGTGTTGATGTATATGGAAAATTTCTGATACATGTATTATGTAGGTATGTGATATGTATTGTGGAAAAGTACCTGATGTGGAGAAGTGGGATGAAGCTCAAATTGGTCACTATATTGGCATTGGTAGGATGATCATTACTCTTCTGTTTCATTTTTTTTCTTAAGAAGAGCATCTTGAATAATTTTATGGGTGCTTGTTACCTCTGGACATGCTTACCTTAGGGGAGGAGGCATAGATGTGCAATTGAATCCCGTTTGTTGAAAAATTATACTATTGAAATAGGGAAAAATGATATCTTTTTGATTCTCTTGGCATAAGAATTTCTTTTTGAATCCCCTTGTTAGAATTACCAGCTAGTACCTCTCACCAACAAAGTTACCGGGTAACTCTGTCCACCAAAGGCTTTAATGTATGCGAATAACTGACTTAGCGTTAAGCCTGAGATACACAAACACATTGTATATATATGTGCAAACACACAATACACTTGCACATATATACTCATACATAGTATCTATTTTATTTTGTATGACACTCTTCCTCTTTTGTGATTCTAAAGAAAATTGACATGTCTTTGTCATCAGAAACTTTTTAATTTTGTCATTTTTTTATTTTCCCTTAACGCCATGCTTTTACTGATATCAATAATATGTTTAGGAACAAGATACTAAAGGTGCTTTGGTATATCACACACACACACACACACACACACATATAGCTTATGCATAAAAAATCTTTCTTTCTTAAACTCCGCATACAGTCAAACTCCCTCATATTAATTGAACCTGAGAGAAGTACATAGATACCCACTGATTGTAGCTTAAAATTTGGAACTGTGTTGAATAGATGTGGAAGCTTCGGGAGTGAATGAAGTGAAGGAAGCGTGGGAGAGTCAGCGGAAGGCTTACACATCTGAGTTCATTGAGCTCGATCTTTGTATTGTGAGTTCAACAACTATTCCTTTTCTGGACGTATTTTATTTGGTCTATGCTAATTGAACTTGTGAATCCAGTATTCTGTTGGTTTTCATTATCAGATTCTGTTTGGCAGTTGGTTTGCTGCTTTATATTTTACTCTCGATCAATTTCTGTTGGCTGTTTTAAGTAAAATAGCCAAGAGCGTTGAAGTGTTATCTACCTCACCTCCAAGGCTGAAATGAGCTTTTCCTGTGAAAGATTGAATCCTCAACCCCTCCCCACTTAACTGATATAGTTCGCATTTCAAGTAGTCAGTGTGCAAGTACCTATTTGGTCTCTTGCCGTTCCTTTTGTTTTGTCGAAATTTGTTTTAGTGCCTTGATTCTTCTTATCCTTTTTCTTATTTGTGTGACTGGTTGCTTTTCAGCAATTCAGAGCAGTGTTATTGAGTAAATTGTTTGCTCCTGTTAATATTGCCTTTATGTGTGATGTCATCAACAGAAAGCCGAACTGTATGGATGTTTATTGTGTTCTCAGTTATGAGGTTTGTTGTATGTTTCTGTCTAGTTGGCAATTATATGAGTGTACATTTTTGTGCAGGAAGATATAGAATCATTTTGGAAGGACAAGGAAAAGCAGGCCGATGTTGTTTTCTGCATGCACAATTTACAGGTTAGCTGTTCTTGTACTAGTGTCTTCTTTATATACACTTCTAGCATCTGTTAGTTGCATTGACATTAATCTGATATTTACTTGCAGGCGTGCTTTGATAGTGAAGAGAAAGCAAGGAGGCTATTGCATAATGTATCAGCTTTGCTT</genome_strand>
        <mrna_strand>TGAACGAGAGCAGCAGGGTTTTTGTGTGGGTTTTAGAGGCGATGATGATGATGGCGAATTCATTCCCGATTCACAGACCTGCCGAGTCAACTCACCATCGACTTCTCGATTTCGTCAAAAATGTGCTTATCGGTATCTTCGTCTCCCCATATGCCACT............................................................................................................................................................................................................................................................................................................GTATGTGATATGTATTGTGGAAAAGTACCTGATGTGGAGAAGTGGGATGAAGCTCAAATTGGTCACTATATTGGCATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAGCTTCGGGAGTGAATGAAGTGAAGGAAGCGTGGGAGAGTCAGCGGAAGGCTTACACATCTGAGTTCATTGAGCTCGATCTTTGTATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATAGAATCATTTTGGAAGGACAAAGAAAAGCCAGCCGATGTTGTTTTCTGCATGCACAATTTACAG.......................................................................................GCGTGCTTTGATAGTGAAGAGAAAGCCAGGAGGCTATTGCATAATGTATCCACTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340887" ref_strand="+" ref_description="SGN-E340887 [cTOF-5-C23]">
      <seq>agagtttttcactgattttgtaaaggttgctcaagatgaagggcggcattttactctacttgcagcacggcttaaggaactaggttcattctatggagctttacctgctcatgatggcctgtgggattcagccattgctacttctagcgatctgttggctcgtttggctattgaacactgtgttcatgaggccagaggacttgatgtgattccaacaacaatatcccgtttccgcaatggtggtgatagtgaaacagctgagttactggagaatgtggtgtatccagaagaaataactcactgcgctgcaggagtcaaatggttcaagtatctttgcgtaagatcaaaaaatccaaatctgagtgatattccttcagaagaaactagtaatgtagacaatgaagtgattcaaaagttccattccactgtgaggacatatttcagagggccattgaaacctccttttaatgagcaagcaagaaaagctgctggatttggtccacaatggtatgaacctcttgctgttaaagatttcacagtagtatgaaggtctctcctcgctggtagaacgttgtagcagataccctgcagaattagtcgaggtgtgcaaaagttgccccaaacattacggtttattccaaaaaccaaagctcctcctctggtttctgtaaaactatatttcaaaattctcaggatattaagcataaatggtacactagattattgaggggattcttcaaaatagatcaacactatttgtatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="87459" stop="89655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87759" g_stop="87948" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87949" i_stop="88777" i_length="829">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88778" g_stop="89355" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="767" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E340887" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87759" e_stop="87948"/>
          <exon e_start="88778" e_stop="89355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTTTCACTGATTTTGTAAAGGTTGCTCAAGATGAAGGGCGGCATTTTACTCTACTTGCAGCACGGCTTAAGGAACTAGGTTCATTCTATGGAGCTTTACCTGCTCATGATGGCCTGTGGGATTCAGCCATTGCTACTTCTAGCGATCTGTTGGCTCGTTTGGCTATTGAACACTGTGTTCATGAGGTTCTCTCTTCATCTCTTACACCTTATAAAAGAAATCTGGATATTTATGAATGAAGTAACAAAAAGATATTTTCTTTGTGAAGTCTCAAATGATTAAGCTTGAACACCACTTTATGCCTTTCCTTTTGTCAATAATTTTGATGATAAAATCCATAAGCCTCTAAAATAAGGGTTTATTCCAGAAAATTCCTTTGCACTATGGAATGCGTCCATTTTAACGTGAAACATTCATAATGTAAGAGCTGACTGTAACTTGTAGTTTATACTAATGTGAAACAACCCAGAATTGAACAAACTCAAGAATTTAAGGCCCCTCATTCATGAGTTTTTTCAACTATTTATTGTCACTTTAATTCCGTTATGTTACATAAATCTATAACATGATTACAGTTAACAGTCTGCAAACTAGAGCTATCTGGTGCCACTTGTCATCATATTCATGATCATAACAGGGTGGATTTTAACAAGCAGCTGCAATTTTGCAATTGTGATATCATTATAACCTCAGTTATTTTGATGAACTAGGTTATAGCCTCAGTGATTTGTTTATTCCTATTTCCTAACATGACGTTCACCGCCGACACTAGCGATCCTCGAGTAGTTTTCCAGTTTAACATGATAACCAGGGTGTAATAAAGTGATTTCATGTGGTTAGACGTATTAAGACATGTATGATAGATATCATAAGTCTTAAATATAAGCATAACTTAAAAGTATTAATCAAAGGCTTGTTTTATGCAGTTCATCATCATTCTACTTTTGTAGAATCACTTTCACTTTTTTTTATATTGATACTAGGTTGATGACTTCACATTTTCTGATAATGTAGGCCAGAGGACTTGATGTGATTCCAACAACAATATCCCGTTTCCGCAATGGTGGTGATAGTGAAACAGCTGAGTTACTGGAGAATGTGGTGTATCCAGAAGAAATAACTCACTGCGCTGCAGGAGTCAAATGGTTCAAGTATCTTTGCGTAAGATCAAAAAATCCAAATCTGAGTGATATTCCTTCAGAAGAAACTAGTAATGTAGACAATGAAGTGATTCAAAAGTTCCATTCCACTGTGAGGACATATTTCAGAGGGCCATTGAAACCTCCTTTTAATGAGCAAGCAAGAAAAGCTGCTGGATTTGGTCCACAATGGTATGAACCTCTTGCTGTTAAAGATTTCACAGTAGTATGAAGGTCTCTCCTCGCTGGTAGAACGTTGTAGCAGATACCCTGCAGAATTAGTCGAGGTGTGCAAAAGTTGGCCCAAACATTACGGTTTATTCCAAAAACCAAAGCTCCTCCTCTGGTTTCTGTAAAACTATATTTCAAAATTTTCAGGATATTAAGCATAAATGGTACACTAGATTATTGAGGGGATTCTTCAAAATAGATCAACAACTATTTGTATCCTTG</genome_strand>
        <mrna_strand>AGAGTTTTTCACTGATTTTGTAAAGGTTGCTCAAGATGAAGGGCGGCATTTTACTCTACTTGCAGCACGGCTTAAGGAACTAGGTTCATTCTATGGAGCTTTACCTGCTCATGATGGCCTGTGGGATTCAGCCATTGCTACTTCTAGCGATCTGTTGGCTCGTTTGGCTATTGAACACTGTGTTCATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGGACTTGATGTGATTCCAACAACAATATCCCGTTTCCGCAATGGTGGTGATAGTGAAACAGCTGAGTTACTGGAGAATGTGGTGTATCCAGAAGAAATAACTCACTGCGCTGCAGGAGTCAAATGGTTCAAGTATCTTTGCGTAAGATCAAAAAATCCAAATCTGAGTGATATTCCTTCAGAAGAAACTAGTAATGTAGACAATGAAGTGATTCAAAAGTTCCATTCCACTGTGAGGACATATTTCAGAGGGCCATTGAAACCTCCTTTTAATGAGCAAGCAAGAAAAGCTGCTGGATTTGGTCCACAATGGTATGAACCTCTTGCTGTTAAAGATTTCACAGTAGTATGAAGGTCTCTCCTCGCTGGTAGAACGTTGTAGCAGATACCCTGCAGAATTAGTCGAGGTGTGCAAAAGTTGCCCCAAACATTACGGTTTATTCCAAAAACCAAAGCTCCTCCTCTGGTTTCTGTAAAACTATATTTCAAAATTCTCAGGATATTAAGCATAAATGGTACACTAGATTATTGAGGGGATTCTTCAAAATAGATCAAC-ACTATTTGTATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552472" ref_strand="+" ref_description="SGN-E552472 [cTSB-4-A2]">
      <seq>atcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttctgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgatttttttcctctcttgctcatataatgtttttcctttacttttacagaccatgtaacagctaaaccaaatttcttttgtttaatcaccaaaagaaaattattgctcaatacatattaactgataaatataaaactcaatgatgagaattgacaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91324" stop="89050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91024" g_stop="91006" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="90" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="151" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="212" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="293" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89865" g_stop="89350" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="810" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E552472" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91024" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGA-TTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</genome_strand>
        <mrna_strand>ATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553277" ref_strand="+" ref_description="SGN-E553277 [cTSB-3-P2]">
      <seq>atcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttctgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgatttttttcctctcttgctcatataatgtttttcctttacttttacagaccatgtaacagctaaaccaaatttcttttgtttaatcaccaaaagaaaattattgctcaatacatattaactgataaatataaaactcaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91324" stop="89064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91024" g_stop="91006" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="90" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="151" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="212" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="293" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89865" g_stop="89364" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="796" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E553277" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91024" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGA-TTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATG</genome_strand>
        <mrna_strand>ATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392895" ref_strand="+" ref_description="SGN-E392895 [TUS-36-P20](-)">
      <seq>ttgatgaccccaattatcaggaaagctgataaaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttatgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcaaaaatattttttaccaaataaaaagctgattttttcctctaatgctcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91365" stop="89182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91065" g_stop="91006" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="253" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="334" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89865" g_stop="89476" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="724" r_length="390" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E392895" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91065" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTTT</genome_strand>
        <mrna_strand>TTGATGACCCCAATTATCAGGAAAGCTGATAAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTATGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCAAAAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTAATGCTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368716" ref_strand="+" ref_description="SGN-E368716 [TUS-22-F4](-)">
      <seq>caaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttctgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgattttttcctctcttgctcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91335" stop="89182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91035" g_stop="91006" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="101" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="162" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="223" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="304" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89865" g_stop="89477" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="693" r_length="389" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E368716" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91035" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTT</genome_strand>
        <mrna_strand>CAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370696" ref_strand="+" ref_description="SGN-E370696 [TUS-28-D16](-)">
      <seq>atgaccccaattatcaggaatgctgatcaaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttttgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgattttttcctatcttgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91362" stop="89182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91062" g_stop="91006" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="189" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="331" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89865" g_stop="89478" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="719" r_length="388" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E370696" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91062" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTT</genome_strand>
        <mrna_strand>ATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTTTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTATCTTGCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745857" ref_strand="+" ref_description="SGN-E745857 [GI|47104959]">
      <seq>gatagcggaataataataagcatatagaagttgaagaaagcaagagcgtggtggatctgtgaatgatcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccggtccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcagtgaagtacatgtcgtaccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaaggtattaattatggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccttgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccaggagcaaatgcttactgggatgatggaaaaggtgaggtggtgctttgtgattctgtcgatatatctgttgcggttgccactgaaaagggcttgatgaccccaattatcaggaatgctgatcaaaaatccataccctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtgtaattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttctgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgattttttcctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106987" stop="14283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106688" g_stop="106504" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="236" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="285" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="319" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="369" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="414" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="488" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="558" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="750" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="795" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96743" g_stop="96670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="869" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="939" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="95942" g_stop="95541" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1341" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1342" r_stop="1402" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1403" r_stop="1447" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1448" r_stop="1531" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="91216" g_stop="91140" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1532" r_stop="1608" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="91139" i_stop="91069" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="91068" g_stop="91006" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1609" r_stop="1671" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1672" r_stop="1742" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1743" r_stop="1803" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1804" r_stop="1864" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="21">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="22">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1865" r_stop="1945" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="22">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="23">
          <gDNA_exon_boundary g_start="89865" g_stop="89481" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1946" r_stop="2330" r_length="385" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E745857" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>2330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106688" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91140"/>
          <exon e_start="91068" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCGGAATAATAATAAGCATATAGAAGTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAGGTATGCAGCATACTACTGTTTTGTTGGATTTTGTACAAATCTTGTTCTCATTCCATTTTCTTGAGTTTCAGGGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAAT</genome_strand>
        <mrna_strand>GATAGCGGAATAATAATAAGCATATAGAAGTTGAAGAAAGCAAGAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG.......................................................................GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATACCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTGTAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431276" ref_strand="-" ref_description="SGN-E431276 [STM-55-O13]">
      <seq>aagcaaatgcttactgggatgatggaaaaggtgaggtggtgcttttgattctgtcgatatatctgttgcggttgccactgaaaagggcttgatgaccccaattatcaggaatgctgatcaaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaacccccctcaggctggtataattgctgttggtaggggcaatcaagttgtcgaaccggtggttgatgctgatggaattgagaaaccagctgtagttaacaaaatgagtttgacattatcagctgatcatcgtgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactgtaatacagatgaactgtctgggaacaaaatatcctacaggacaacctgtgcaggcggcgtagttcttttctgataatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttctcgaggataaaaatgattgaggtccataaaattggactagttccaatcccagtgatactaccaaattttctgagatgctaagtttatgacacatcatagtccatctgttctccctgtaaagttgtacaataggggtgcctcaatattctttaccaaagaaaaagcngatttttcctctcaaaaaagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="91520" stop="89194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91216" g_stop="91140" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="85" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91139" i_stop="91069" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91068" g_stop="91006" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="219" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="280" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="341" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="422" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89865" g_stop="89482" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="796" r_length="374" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E431276" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431276" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91216" e_stop="91140"/>
          <exon e_start="91068" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAGGTATGCAGCATACTACTGTTTTGTTGGATTTTGTACAAATCTTGTTCTCATTCCATTTTCTTGAGTTTCAGGGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAA</genome_strand>
        <mrna_strand>CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTT-TGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG.......................................................................GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCCCCTCAG.....................................................................................................................................................................................................................................................................GCTGGTATAATTGCTGTTGGTAGGGGCAATCAAGTTGTCGAACCGGTGGTTGATGCTGATG.................................................................................................................................................GAATTGAGAAACCAGCTGTAGTTAACAAAATGAGTTTGACATTATCAGCTGATCATCGTGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTGTAATACAGATGAACTGTCTGGGAACAAAATATCCTACAGGACA----ACCTGTGCAGGCGGCGTAG-T-TCTTTTCTGATAATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTCGAGGATAAAAATGA-TTGAGGTCCATAAAATTGGACTAGTTCCAATCCCAGTGATACTACCAAATTTTCTGAGATGCTAAGTTTATGACACATCATAG-TCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTCTTTACCAAAGAAAAAGCNGA-TTTTTCCTCTC-AAAAAAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282395" ref_strand="-" ref_description="SGN-E282395 [cLER-18-F17]">
      <seq>atgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttcttctgagatgccaagtttatgacacttcacagttccatctgttctccctgtaaagttgtacaataggggtgcctcaatattttttaccaaataaaaagctgattttttcctctcttgctcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="90312" stop="89182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90012" g_stop="89961" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89865" g_stop="89486" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="432" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="450"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E282395" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282395" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90012" e_stop="89961"/>
          <exon e_start="89865" e_stop="89486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCAT</genome_strand>
        <mrna_strand>ATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433158" ref_strand="-" ref_description="SGN-E433158 [STM-58-G11]">
      <seq>cttgggcatgtttccagtggatcggttttgtgcaattatcaacccccctcaggctggtataattgctgttggtaggggcaatcaagttgtcgaaccggtggttgatgctgatggaattgagaaaccagctgtagttaacaaaatgagtttgacattatcagctgatcatcgtgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactgtaatacagatgaactgtctgggaacaaaatatcctacaggacaacctgtgcaggcggcgtagttcttttctgataatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaggataaaaatgattgaggtccataaaattggactagttccaatcccagtgatactaccaaattttctgagatgctaagtttatgacacgtcatagtccatctgttctccctgtaaagttgtacaataggggtacatcaatattctttaccaaataaaaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="90860" stop="89208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90560" g_stop="90509" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="113" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89865" g_stop="89506" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="546" r_length="352" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E433158" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433158" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90560" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGA</genome_strand>
        <mrna_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCCCCTCAG.....................................................................................................................................................................................................................................................................GCTGGTATAATTGCTGTTGGTAGGGGCAATCAAGTTGTCGAACCGGTGGTTGATGCTGATG.................................................................................................................................................GAATTGAGAAACCAGCTGTAGTTAACAAAATGAGTTTGACATTATCAGCTGATCATCGTGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTGTAATACAGATGAACTGTCTGGGAACAAAATATCCTACAGGACA----ACCTGTGCAGGCGGCGTAG-T-TCTTTTCTGATAATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAGGATAAAAATGA-TTGAGGTCCATAAAATTGGACTAGTTCCAATCCCAGTGATACTACCAAATTTTCTGAGATGCTAAGTTTATGACACGTCATAG-TCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTACATCAATATTCTTTACCAAATAAAAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433157" ref_strand="+" ref_description="SGN-E433157 [STM-58-G11]">
      <seq>cttgggcatgtttccagtggatcggttttgtgcaattatcaacccccctcaggctggtataattgctgttggtaggggcaatcaagttgtcgaaccggtggttgatgctgatggaattgagaaaccagctgtagttaacaaaatgagtttgacattatcagctgatcatcgtgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactgtaatacagatgaactgtctgggaacaaaatatcctacaggacaacctgtgcaggcggcgtagttcttttctgataatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaggataaaaatgattgaggtccataaaattggactagttccaatcccagtgatactaccaaattttctgagatgctaagtttatgacacgtcatagtccatctgttctccctgtaaagttgtacaataggggtgcctcaatattctttaccaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="90860" stop="89211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90560" g_stop="90509" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="113" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89865" g_stop="89507" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="545" r_length="351" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E433157" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90560" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTG</genome_strand>
        <mrna_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCCCCTCAG.....................................................................................................................................................................................................................................................................GCTGGTATAATTGCTGTTGGTAGGGGCAATCAAGTTGTCGAACCGGTGGTTGATGCTGATG.................................................................................................................................................GAATTGAGAAACCAGCTGTAGTTAACAAAATGAGTTTGACATTATCAGCTGATCATCGTGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTGTAATACAGATGAACTGTCTGGGAACAAAATATCCTACAGGACA----ACCTGTGCAGGCGGCGTAG-T-TCTTTTCTGATAATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAGGATAAAAATGA-TTGAGGTCCATAAAATTGGACTAGTTCCAATCCCAGTGATACTACCAAATTTTCTGAGATGCTAAGTTTATGACACGTCATAG-TCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTCTTTACCAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402973" ref_strand="+" ref_description="SGN-E402973 [PPC-9-C2]">
      <seq>cttgggcatgtttccagtggatcggttttgtgcaattatcaacccccctcaggctggtataattgctgttggtaggggcaatcaagttgtcgaaccggtggttgatgctgatggaattgagaaaccagctgtagttaacaaaatgagtttgacattatcagctgatcatcgtgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactgtaatacagatgaactgtctgggaacaaaatatcctacaggacaacctgtgcaggcggcgtagttcttttctgataataatttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaggataaaaatgattgagggccataaaattggactagttccaatcccagtgatactaccaaattttctgagatgctaagtttatgacacgtcatagtccatctgttctccctgtaaagttgtacaataggggtgcctcaatattctttaccaaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="90860" stop="89211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90560" g_stop="90509" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="113" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89865" g_stop="89509" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="543" r_length="349" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E402973" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90560" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGC</genome_strand>
        <mrna_strand>CTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCCCCTCAG.....................................................................................................................................................................................................................................................................GCTGGTATAATTGCTGTTGGTAGGGGCAATCAAGTTGTCGAACCGGTGGTTGATGCTGATG.................................................................................................................................................GAATTGAGAAACCAGCTGTAGTTAACAAAATGAGTTTGACATTATCAGCTGATCATCGTGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTGTAATACAGATGAACTGTCTGGGAACAAAATATCCTACAGGACA----ACCTGTGCAGGCGGCGTAG-T-TCTTTTCTGATAATAATTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAGGATAAAAATGA-TTGAGGGCCATAAAATTGGACTAGTTCCAATCCCAGTGATACTACCAAATTTTCTGAGATGCTAAGTTTATGACACGTCATAG-TCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTCTTTACCAAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739635" ref_strand="+" ref_description="SGN-E739635 [LC18BA06]">
      <seq>acttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccaggagcaaatgcttactgggatgatggaaaaggtgaggtggtgctttgtgattctgtcgatatatctgttgcggttgccactgaaaagggcttgatgaccccaattatcaggaatgctgatcaaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaaccctcctcaggccggtataattgctgttggtaggggcaataaagttgtcgaacctgtggttggtgctgacggaattgagaaaccagctgttgttaacaagatgagtttgacattatcagctgatcatcgcgtctttgatgggaaggttggaggtgcgttcgtttcagcattgtcatctaacttcagtgacatcaagaagcttctactttaatacggatgaagtgtctgggaacaaaatatcctacaggacatgtcacctgtgcaggcggcgtagttgttttttctgatgatagtttgcctctttcagatctcaagcttgtattaatggtgccatttttgttcttgaagatagaaatgatttgaggtccataaaattggactagttccaataccaatgatactaccatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="95910" stop="89307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95610" g_stop="95541" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="131" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="176" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="260" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91216" g_stop="91140" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="337" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91139" i_stop="91069" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91068" g_stop="91006" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="400" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="471" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="532" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90247" g_stop="90187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="593" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="90186" i_stop="90042" i_length="145">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="90041" g_stop="89961" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="674" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89960" i_stop="89866" i_length="95">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="89865" g_stop="89607" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="933" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E739635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95610" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91140"/>
          <exon e_start="91068" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90187"/>
          <exon e_start="90041" e_stop="89961"/>
          <exon e_start="89865" e_stop="89607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAGGTATGCAGCATACTACTGTTTTGTTGGATTTTGTACAAATCTTGTTCTCATTCCATTTTCTTGAGTTTCAGGGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACGGTATAGTTCTAACTGAAAATTCTCATTGTGTAATTTTTTTGCTTATTCAATTTGCTGAAATATTGCCAACACCACACCGATTAGTTTAGGATTGAGATGTATAGTAGTTTCTTTAACTAGTTGAATTTCGCTTCCTTCTTTTCAGGAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAGGTAAAGTTCAGACTTCTCATCTTTAAAAACTTGTATAGTTTACCGAAGTAGAGATTGTAGTTCACGTGTTTACATCTCTTCAATCAATCTTGCAGGTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCT</genome_strand>
        <mrna_strand>ACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG.......................................................................GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG.....................................................................................................................................................................................................................................................................GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG.................................................................................................................................................GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG...............................................................................................GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431275" ref_strand="+" ref_description="SGN-E431275 [STM-55-O13]">
      <seq>attacggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccctgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactttaacaaagtcacttgggttaaaatctgatggacagcaaaatgatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctactcctcacttgtacttgtccacagatgttatattggactcccttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccagaagcaaatgcttactgggatgatggaaaaggtgaggtggtgctttgtgattctgtcgatatatctgttgcggttgccactgaaaagggcttgatgaccccaattatcaggaatgctgatcaaaaatccatatcctcaatatctgcggagatcaaggagcttgctggaaaggcacgagctggaaagcttaaacctaatgaattccaaggtggcactttcagcatttcaaacttgggcatgtttccagtggatcggttttgtgcaattatcaacccccctcaggctggtataattgctgttggtangggcaatcaagttgtcaaaccggtggttgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96089" stop="89890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95789" g_stop="95541" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="310" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="439" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91216" g_stop="91140" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="516" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91139" i_stop="91069" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91068" g_stop="91006" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="579" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91005" i_stop="90723" i_length="283">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90722" g_stop="90652" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="650" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90651" i_stop="90570" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90569" g_stop="90509" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="711" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="90508" i_stop="90248" i_length="261">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="90247" g_stop="90190" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="769" r_length="58" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E431275" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95789" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91140"/>
          <exon e_start="91068" e_stop="91006"/>
          <exon e_start="90722" e_stop="90652"/>
          <exon e_start="90569" e_stop="90509"/>
          <exon e_start="90247" e_stop="90190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAGGTATGCAGCATACTACTGTTTTGTTGGATTTTGTACAAATCTTGTTCTCATTCCATTTTCTTGAGTTTCAGGGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAGGTAAAAAGGGATATAGGTTGCACTGTTTATTTTTTCAATATCTTGGATGATAAGGCTAGACACTATTTGCTTTTAAATGGGGATATTGAAATTCTGTTTAATGTATAAACTATAGGATTTTGATACTTTGAAGGGAACTGCAATTTTGTTCATAGAAGCTAGCACGAGAAATATTTTCTGCAATATGTATATACTGTATATTTTCTGTCTTTATATAGGAGTCTAATATCCCAGCTTATTGTGGTTTCTTACCTTCTCATTATCATCTACTTGTGCATGAAAGATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAGGTGAATAATCGACTTCAGATTCTAGGCATTGTAAAGAGCAGCTCTATTGGGCAGGAATTATATCTTCTGTGTCTTTTTGCAGCATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAGGTCAATATACTTTTCTTCCGTCTCATCCAGTAGCACCCCTGCATGAAAAATATCTGCTATTCCTTCCCTTTGATCGAATAGATTAGCGTTTTATGTCAGCCTCTCCTTAACTATTGAACTTCTACAGTCCATGCATTAAATTTTATAACTGAATTGTTACCGGTGAGTTATATAACTGATAGTTCTCCAGAACAGGTCATCCCTGTCACTGCTCATACACCTCTTGCTTGAAATCCATAACATTGTAATCTCTTTCCTCAGGCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTG</genome_strand>
        <mrna_strand>ATTACGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCCTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTTTAACAAAGTCACTTGGGTTAAAATCTGATGGACAGCAAAATGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACTCCTCACTTGTACTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCCCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGAAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG.......................................................................GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG...........................................................................................................................................................................................................................................................................................ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG..................................................................................CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCCCCTCAG.....................................................................................................................................................................................................................................................................GCTGGTATAATTGCTGTTGGTANGGGCAATCAAGTTGTCAAACCGGTGGTTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463796" ref_strand="+" ref_description="SGN-E463796 [cPRO-16-C13]">
      <seq>attacggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccctgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactttaacaaagtcacttgggttaaaatctgatggacagcaaaatgatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctactcctcacttgtacttgtccacagatgttatattggactcccttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccagaagcaaatgcttactgggatgatggaaaaggtgaggtggtgctttgtgattctgtcgatatatctgttgcggttgccactgaaaagggcttgatgacccccaattatcaggaatgctgatcaaaaatccatatcctcaatatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96089" stop="90710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95789" g_stop="95541" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="310" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="439" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91216" g_stop="91140" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="516" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91139" i_stop="91069" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91068" g_stop="91010" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="576" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E463796" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95789" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91140"/>
          <exon e_start="91068" e_stop="91010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAGGTATGCAGCATACTACTGTTTTGTTGGATTTTGTACAAATCTTGTTCTCATTCCATTTTCTTGAGTTTCAGGGCTTGATGA-CCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGC</genome_strand>
        <mrna_strand>ATTACGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCCTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTTTAACAAAGTCACTTGGGTTAAAATCTGATGGACAGCAAAATGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACTCCTCACTTGTACTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCCCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGAAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG.......................................................................GGCTTGATGACCCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392803" ref_strand="+" ref_description="SGN-E392803 [TUS-36-P20]">
      <seq>caactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatataatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccaggagcaaatgcttactgggatgatggaaaaggtgaggtggtgctttgtgattctgtcgatatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97000" stop="90860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96700" g_stop="96670" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="101" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="248" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95541" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="407" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="468" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="513" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="597" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91216" g_stop="91160" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="654" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E392803" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96700" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTG</genome_strand>
        <mrna_strand>CAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATATAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368717" ref_strand="+" ref_description="SGN-E368717 [TUS-22-F4]">
      <seq>aactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccaggagcaaatgcttactgggatgatggaaaaggtgaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96999" stop="90888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96699" g_stop="96670" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="247" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95541" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="467" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="512" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="596" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93428" i_stop="91217" i_length="2212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91216" g_stop="91188" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="625" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E368717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96699" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="91216" e_stop="91188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAATGTAGGATGAAGCGAGGCATAGTTAGCTATGAAACCTAATTGTGAATTTGTTTAGTATGTGGAAGCAGACTTTCTAGCTTTGTTAGATGAATGACCATAATCTTTTTTCTCAATTTTGATACTTCCCAATCAGTTTCATTTAGTTCTTATGTCAGGAAAAGATCATATGATCTCTGAAAGAAGATGTAGGAGGGACAAAAGATAGCTTTTCCAGTTAAATGTGAATGGTGTTTGTTGTAACATGCACTTAGATATCATATAATCCTTTTTGTCAAAAAAAGAAAAGATATCATATAATCATTTACAACTGTATGTTTATTGTGTTCTGTTTTAGGTAAATATTAAGAGTTTATAATTGATATTACTGTGAACATAATAATGTCCATTGATGATAATTGACTTGTCATTTTTCCCGTTTCCCTTAAATGCTCATGGTTTGGGCATATTAAGGGCGATAAGATTAGGAACGAGGGTATACGGGACAAGGTGGTAGTGAGCTCCGTGGTGAACAAGATGACGGAATGGAGACTAAGATGGTTTAAGCATGTGAAGAGGAGATGTGCATATGTCCCAATGAGGAGGTATTAGAGGTTGGATATAGTGGGTACAAGGAGAGGTAGAGGTAGACCAAAAAAGTATTGGGGAGAGGTGATTACACATGAAATTGTAGCTTCAGCTTACAGAGAAATGCCCGTAGATAGGAGGTTGTGGAGGACATGTATTAGGATAGAAGGTTAGTAGGCATTGTTCGTCCATACTAGTAGTTGTAGATTACTTGTGTAGTTTTTTGTTCTTCAACTATCATATTATTTTGTTGTGGAACTGTTCTGTTACTATCTGCTGTTTTTGTCACTATGTATTGATTCTTGTACTTCCATTACTATCAGTTGTTTATTATTGAGCCGAGGGTCTACGAAAACAACTTCTCTACTAAGGTGGGGGTACGGTGGCATATGCTTTACCCTCGCCAGACCACATTTTGTGGAATTCCATTGGGTATGTTGTTGTTGTGTCTCAAATGCTCATGGTGTATCAAGTTTTTTCTTATTTGTAAGTTCAGAAGTGAACATTTAATTTGAGAAATGAGGCTATAAGTTATGTATTTCCATTTATATGAATGAAGCATGCTAGCTCTCTTATTTCCAGAGGTCTAGTGGGTCTCCTACAATCTCTTTTACTAAGAAGCATTCAGTGAGACACTCAACCCCATTAGGCTTCATCCTAATCATGTACAATCTCTGTTGGTCTGGAGTGAAGCCACTTAAGTCTTCACTATCTAATTATTCTTCACGGAAAAAATACTCAATTTGTAGAGGAGAAACTCTCGTCTCATTTTGCAAAACCTCTTTCCGGACGGAATAGGAGACTTGTCTGGTTATGTACTACAGTTGTTCTCCAGTAATTTCTTTTTTTTTTAAATGCATTTACAGATTAACAGACTCTATATGTGTATACTTCTTTCTCTTTTTTCCACAACTTAAAGAGTATCTATCTGTTGACTTTATGTTGTGCAATCACAAACTTTTAGTCCAACTGGCCAAAGAATTCTATATCCTCTTTGCTTCTGTATATATTGCAACTTATTGTGGAAAGAGTTGATTTTGTTTACAGTCTAACTCTAACTCTTCATTCAGACAAACTTTTAATGAAGACCACTATTTCCATGAAACCTATTGTACTTTTGGTTCTTCTCCTGGCATTCATAATAACTATTGATAGCAACTGTCGATTTGTTGGTGTTTGTCTAGGATACTGTAAAATTGTAAGGTGATCTTTTTCCTTATTTGTCTCCTGTAAATCATGATAAAATCTAGACCAGCAATCGAGAGTGTGTAATTTTTGCTGAACTGTTCTTCAGAAACCTGTAGCACTTCTCTGCTCACAATACCCTTAAAAGCTATAACCCCACCCTCACAAGCAAGAATAGCAGAAAAGGATGGAGAGTCATTGTACTTAATTGATGGCTATATCCTTCAAGTATGGTTTTCCGGTTACTAAATCAATTCATTCCTGATCTATGATTATTCCTCATTGAATTTCACTACATAGACTTTTAGTTTACTTGCGGATGACTAGCTTAGTGAAAGACACTTTCTCCTGTGAAATGCTAGTTCACTGAAAAGCTTTCTCTTTAAATCCATTACAGCTTACTGGGATGATGGAAAAGGTGAGGTG</genome_strand>
        <mrna_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTGGGATGATGGAAAAGGTGAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577551" ref_strand="+" ref_description="SGN-E577551 [60143]">
      <seq>gatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcacagttgaggatgagaatgatattgaagctgtgaggacatcgatcagtggcaacaatgtagttaaggaagaaaagccggtccgtcatgatgtcacagctgaagttagaactcagacaacagctttcaatagaatcagtccagctgctaaggtgttaattacggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccctgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggttaaccaacaagctactttaacaaagtcacttgggttaaaatctgatggacagcaaaatgatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctactcctcacttgtacttgtccacagatgttatattggactcccttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacattgtaatcaaagtggttgcagcaacattaagaaatgtaccagaagcaaatgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97017" stop="93123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96717" g_stop="96670" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="118" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95541" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="520" r_length="402" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="581" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="626" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93512" g_stop="93429" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="710" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93428" i_stop="93369" i_length="60">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93368" g_stop="93363" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="716" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E577551" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96717" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93429"/>
          <exon e_start="93368" e_stop="93363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATGGTGAGTTTTTATTAGTATTTTCATTGCTAATTGAAGTTCTAACTTATTTTTCATTAACAGCTAAAA</genome_strand>
        <mrna_strand>GATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCACA...........................................................................................................................................................................................................................GTTGAGGATGAGAATGATATTGAAGCTGTGAGGACATCGATCAGTGGCAACAATGTAGTTAAGGAAGAAAAGCCGGTCCGTCATGATGTCACAGCTGAAGTTAGAACTCAGACAACAGCTTTCAATAGAATCAGTCCAGCTGCTAAGGTGTTAATTACGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCCTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTTAACCAACAAGCTACTTTAACAAAGTCACTTGGGTTAAAATCTGATGGACAGCAAAATGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACTCCTCACTTGTACTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCCCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGAAGCAAATG............................................................CTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249205" ref_strand="+" ref_description="SGN-E249205 [cLEF-50-I14]">
      <seq>agaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaaggtattaattatggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccttgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatgatgttaaagtctctgtgaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96177" stop="93179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95877" g_stop="95541" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="398" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="443" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93512" g_stop="93479" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="477" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E249205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95877" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATGATGTTAAAGTCTCTGTGAATGACAT</genome_strand>
        <mrna_strand>AGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATGATGTTAAAGTCTCTGTGAATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239911" ref_strand="+" ref_description="SGN-E239911 [cLED-29-I19]">
      <seq>aactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96999" stop="93288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96699" g_stop="96670" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="247" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95541" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="467" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="512" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93512" g_stop="93504" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="521" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E239911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96699" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATG</genome_strand>
        <mrna_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242756" ref_strand="+" ref_description="SGN-E242756 [cLED-31-I6]">
      <seq>aactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctctccttcagaaaggagcttaaagaaaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96999" stop="93288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96699" g_stop="96670" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="247" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95541" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="467" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93641" g_stop="93597" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="512" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93512" g_stop="93504" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="521" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E242756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96699" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93597"/>
          <exon e_start="93512" e_stop="93504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAGGTATAGAATTAAGGTATTTAATTTGTATTGTTGCTTGTGCTGATATTCCTTCATAATGATCTGGCACATCTTTATTCTGTGCAGAAAAGTATG</genome_strand>
        <mrna_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG....................................................................................AAAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370697" ref_strand="+" ref_description="SGN-E370697 [TUS-28-D16]">
      <seq>ttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaaggtattaattatggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccttgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatctaagcaatctacccctcacttgtatttgtccacagatgttatattggactctcttctcttcttcagaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97027" stop="93306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96727" g_stop="96670" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="128" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95541" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="530" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93878" g_stop="93818" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="591" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93641" g_stop="93606" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="627" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E370697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96727" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95541"/>
          <exon e_start="93878" e_stop="93818"/>
          <exon e_start="93641" e_stop="93606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAGGTACTATGAACTACCATCAGCAGTTATTTAACACTTTTACCTTATTATACTTATTAAATGATAGAGCCTTAATTGTGTTGTTTAGGTATTTTATGTTATATACTATCATATTTGCTAACACATTGAGAAAAAAATGAAGGACAATCTTATTTCTTGGATGTAATGATCAGTTTCATTTATCTATGTAATACGAGTCTCTTTCTTAAATTTTTAAATGTGGGTGAGAACATAACTTGGTTTAAGAAAAAATTGAATGACTTTTGAAACTTGTGATCTAAAACAATCCTTAGATATTTGTGTGGTTGTAAATCATTTCATTAAGTGTAAAAGGGGAGTTTTTTAGTTAAATTGTTTTTAATTATAAGAAGGTGACATTCTGGATGAACTTAAAAAGGAAAAGGTGTCACATAAAATGGGACGAAGGGAGTAATACTTTTGATTCTTTCTATTTCCTTTTTTCTTTTTTTTTCGTCTTTTTTCTTGCGTAATTCTTACTCTTCATTAAGAGGTCTTTGATCAACCTTCTATTGAAGACTAGTTGATTACCACAACAGTTCAATTTATTGAAAAAAATACCATCCCCCTGTATGAACTACTCTTTTACGGTTAGTATATCACCTTGTTAAAAAACAACTGTCTTTGGAATTTTGGATTGGATAATTTAGTAAACATAAAATTTGTTTGCAACCATTTACTTTGCAAGATTGACGACCAGACCTTCACAGTACTTATTCTATCATCTTAGTTGAAATACGGTAACAATTCCTAAATATCATGCTTTAGACTTAATAACAAGTCTATAGGTTTAGAAAGAAAAAAAAGTCAACGGTATTTTACTTTTCGAAAATAAATTTTGGACAGACAACTGTAGATGAAAAGGTTTAGATTTAAAGAGAAAGATGACTTATTAAAGGAATTTGAGAGTCTTAACTGATAATACTTGTAAGGTTGTCTGTTAATATGGAAATGAGTTTGGTTTTGTTCTTTTTCTGGGGAGATTTTTATTTTGTTTCAATAAAGAAATTGTGTTTTGTTTACCAAATAAACATGTGTTACACCTTTCTATTAAAAACTTTGTTGCTGCCTAAAATTATCAAGGTGGCAGTAATAACCAAGTTAAAAATTTCGGTGTTCTTAAAAATCATTCTTTGCATTTCTAGACCTAGTGAGTTTTCCTTTGTTGAATGAGCATTGAACAAAGACTAACAAGTTGATCTGTGAAATTTGAACTTAGAAGGTTCAGTTTGTAAATCACCCAAGGAGAAGTTGAAATATGAATAATTATTTTTACCTTTAAAAATTAAACATCTACAGTCTAAAATTAGAAATATGTTAATAAATCAGCTGTTCGAATAAGGACCCCAAGTAGGATATCAGCTGATCAAATTAGGACTCCAGGTAGGGTATTATCTTGTCTTATTTGTTTTCCTCTTTTCTGGTGTAGTGCTTCTTCTGCAGTGTATTCATCTTGGTTTTTTCTTATCATGTGATCCACTTTCGACTTGGCTTATGCTCTACATTGTTCTTATTTTTCACTAAGTTTTTGTGCTATCAATGTATTCTTCACTCCCATTTCCTGTGTTTTTTTATGCAAATAGGAGACTTGCACAGATGACATCTCATACTTGATTTGCTGTGTCTCTCAATCCTTATATTTTGCAGGTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAGGTTCTGTCAATTCTCAAGTTCTTAGTGCCTACTAAGCTTTTGTAACTATTATGCATCTACTTGATGCCTGCAATAGAACTAATTACTTCATCAAAAAAAAAAAATTCTTAGTGCTATGAGTAGTAATTACTAATATCTAATTTGTGGAACTTTTTCAAATTATTCATTTCTCACAGATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGG</genome_strand>
        <mrna_strand>TTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG................................................................................................................................................................................ATGTTATATTGGACTCTCTTCTCTTCTTCAGAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241276" ref_strand="+" ref_description="SGN-E241276 [cLED-26-H13]">
      <seq>aactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaaggtgatagcagcaaggttattggaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96999" stop="95228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96699" g_stop="96670" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="247" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95541" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E241276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96699" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG</genome_strand>
        <mrna_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310210" ref_strand="+" ref_description="SGN-E310210 [cLEZ-8-J4]">
      <seq>gtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaaggtattaattatggaacatggtttagatgcatcatcaattccagcatctggtcctcgtggtaccttgttaaagggagatgttcttgctgcattgaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacaaagtcacttgatttaaaatctgatggacagcaaaaggatgcttatgaagatttacccaatagtcaaattcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97033" stop="95242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96733" g_stop="96670" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="134" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95542" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="535" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E310210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96733" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAA</genome_strand>
        <mrna_strand>GTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238323" ref_strand="+" ref_description="SGN-E238323 [cLED-17-M17]">
      <seq>aactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcaccggaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaagtctggaaagggatcaagcaacaattcatcagttgggaaggcaactccatctcctcctcaggtcaaccaacaagctactccaacanagtcacttgatttaaaatctgatggacagcanaaggatgcttatgaagatttacccaatagtcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="96999" stop="95246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96699" g_stop="96670" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95796" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="247" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95795" i_stop="95700" i_length="96">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95699" g_stop="95546" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="401" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E238323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96699" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95796"/>
          <exon e_start="95699" e_stop="95546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTC</genome_strand>
        <mrna_strand>AACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCGGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG................................................................................................TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACANAGTCACTTGATTTAAAATCTGATGGACAGCANAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270675" ref_strand="+" ref_description="SGN-E270675 [cLEM-6-G10]">
      <seq>ttctctgtgagatagaaacctgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcaacaatgtggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaactcagacaacaggtttcaatagaatcagtccagctgctaaggtattaattatggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97027" stop="95478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96727" g_stop="96670" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="129" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95942" g_stop="95778" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="294" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E270675" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96727" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTGAGATAGAAA-CTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACAT</genome_strand>
        <mrna_strand>TTCTCTGTGAGATAGAAACCTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307470" ref_strand="+" ref_description="SGN-E307470 [cLEY-12-F6]">
      <seq>tgtaccggtgggacagactatcacaattacagtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagatgttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcatggttgaggatgaaaatgatattgaagctgtgaggacatcgatcagcggcgacaatgaggttaaggaagaaaagccggtcagtcatgatgtcacaactgaagttagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="100611" stop="95536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100311" g_stop="100281" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="223" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="268" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96743" g_stop="96670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="342" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="412" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95942" g_stop="95836" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="519" r_length="107" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E307470" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100311" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAAC</genome_strand>
        <mrna_strand>TGTACCGGTGGGACAGACTATCACAATTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGATGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG...........................................................................................................................................................................................................................GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCGACAATGAGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248460" ref_strand="+" ref_description="SGN-E248460 [cLEF-59-P9]">
      <seq>ggagacggggctccagaagcgagtcctgcgaatatcanctcgggtgaagttcctcctcatatgatccttgatatgccagctttgtccccaacaatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcacagttgaggatgagaatgatattgaagctgtgaggacatcgatcagtggcaacaatgtagttaaggaagaaaagccggtccgtcatgatgtcacagctgaagttagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="97395" stop="95536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97095" g_stop="97000" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="141" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96743" g_stop="96670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="215" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="285" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95942" g_stop="95836" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="392" r_length="107" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E248460" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97095" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAAC</genome_strand>
        <mrna_strand>GGAGACGGGGCTCCAGAAGCGAGTCCTGCGAATATCANCTCGGGTGAAGTTCCTCCTCATATGATCCTTGATATGCCAGCTTTGTCCCCAACAATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCACA...........................................................................................................................................................................................................................GTTGAGGATGAGAATGATATTGAAGCTGTGAGGACATCGATCAGTGGCAACAATGTAGTTAAGGAAGAAAAGCCGGTCCGTCATGATGTCACAGCTGAAGTTAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560508" ref_strand="+" ref_description="SGN-E560508 [20173]">
      <seq>ccagctttgtcccctacaatgactcatggtaatatagcaaaatggataaagaaagagggggagaagatacaagcaggggacgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagacggggctccagaagcgagtcctgcgaatatcagctcatttgaacttcctcctcatatgatccttgatatgccagctttgtccccaacaatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaaggattcttggccaaaatactggcacctgaaggttcaaaagatgtggctgttgggcagcctattgcaatcacagttgaggatgagaatgatattgaagctgtgaggacatcgatcagtggcaacaatgtagttaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="101267" stop="95572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100967" g_stop="100947" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="66" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="140" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="210" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="402" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="447" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96743" g_stop="96670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="521" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96231" g_stop="96162" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="591" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="95942" g_stop="95872" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="662" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E560508" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100967" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96670"/>
          <exon e_start="96231" e_stop="96162"/>
          <exon e_start="95942" e_stop="95872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGAAGAATCCTTCCTAGCCTCTTCATATTGACTTTCTATGGCGGAGGCCTTCTTAGTTACATCTACTGCTGTTTATTTCTGGGAGTATGTGAGGTTGTTTTTGTTACGGTTTTATCATGTTTTGAGTCTTTGAAGTAGAAGACATTCCATTCCATGTGTATCCTGTTTGCTCTTGTAGATTATGAAACTATTTCCCTCTAATTCAGTGTTGGTTTTACAATTTGATGTGTTTGTTTTCTTTGGCCACAAAAAAATATTTTTATCTGGTGTGATTTCTAGATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATGGTAAGTTGCTGATGCTCCTCTCTTTTTTTCACCTTCTGTGAGAAATTTAGAACTTTCTGTTGTCTTAACCATTAGAAGATGCAAATCAGTATATTCAGATTTAGGGTAGGGACTTGTTGTAGTTCTTTTTTTTTTTTAAAATATTTTATCTGGTATAGTTACTCTGCTATGGATTATAACTCTTAGCATTTTGTGGAATAAATACTTCTTTTTTGCAAGGTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAA</genome_strand>
        <mrna_strand>CCAGCTTTGTCCCCTACAATG....................................................................................................ACTCATGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGAGAAG........................................................................................................................................ATACAAGCAGGGGACGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGACGGGGCTCCAGAAGCGAGTCCTGCGAATATCAGCTCATTTGAACTTCCTCCTCATATGATCCTTGATATGCCAGCTTTGTCCCCAACAATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCACA...........................................................................................................................................................................................................................GTTGAGGATGAGAATGATATTGAAGCTGTGAGGACATCGATCAGTGGCAACAATGTAGTTAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343570" ref_strand="+" ref_description="SGN-E343570 [cTOF-20-A4]">
      <seq>gctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaagaagggtaaactttcccattacattttaaataagatgtttaattgcaagaaaataagatactgttagagattataactattactattttttactgtactttctataaggtaattatttcttaagactttctagttatccagaaaagcagcctcaaaatattgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="101294" stop="96208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100994" g_stop="100947" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="93" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="167" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="237" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="429" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="474" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96743" g_stop="96508" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="710" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E343570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100994" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGA</genome_strand>
        <mrna_strand>GCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAAGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244809" ref_strand="+" ref_description="SGN-E244809 [cLEF-2-G13]">
      <seq>aagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgacaaagcaactcttgagcatgaaagtcttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="100961" stop="96374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100661" g_stop="100592" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="140" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="332" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="377" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96743" g_stop="96674" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="447" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E244809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100661" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAG</genome_strand>
        <mrna_strand>AAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736221" ref_strand="+" ref_description="SGN-E736221 [LC04DC12]">
      <seq>cgaatgatcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccggtccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcagtgaagtacatgtcgtaccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaaaggaaggtgacaagatagaggttggtgatgttctctgtgagatagaaactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106928" stop="96405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106629" g_stop="106504" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="177" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="226" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="260" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="310" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="499" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="691" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96900" g_stop="96856" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="736" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="96743" g_stop="96705" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="775" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E736221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106629" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96856"/>
          <exon e_start="96743" e_stop="96705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAGGTTGGTGCTGCATTATAAGTGACTAGTGAATTTTCACAAATACCCCAGACACTGGGCAGGGATGGACTAAAACAGCATGTGTAACTATTATCTTCTTTTTATTTTGACACAGATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGAC</genome_strand>
        <mrna_strand>CGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG................................................................................................................ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247965" ref_strand="+" ref_description="SGN-E247965 [cLEF-47-P2]">
      <seq>tcgtgccgttcctgctcagtgaagtacatgtcgtaccatgtaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="103821" stop="96570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103521" g_stop="103488" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="44" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="78" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="128" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="173" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="247" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="317" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="509" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96900" g_stop="96870" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="540" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E247965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103521" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATGGAGGAAAA</genome_strand>
        <mrna_strand>CCTGCTCAGTGAAGTACATGTCGTACCATGTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315916" ref_strand="+" ref_description="SGN-E315916 [cTOA-26-D21]">
      <seq>atcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccggtccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcagtgaagtacatgtcgtaccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagatttcctaacagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagatggggctacagaagtgagtcctgcgaatatcagctcatctgaacttcctccacatctgatccttgatatgccagctttgtccccaaccatgaaccaaggtaacatttttaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106923" stop="96578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106623" g_stop="106504" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="171" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="220" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="254" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="304" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="349" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100678" i_length="124">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100677" g_stop="100592" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="435" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="505" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97000" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="697" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96900" g_stop="96878" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="720" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E315916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106623" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100677" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97000"/>
          <exon e_start="96900" e_stop="96878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATGGTATGGAAAGCTAATAATGGACTCTTTAATTTCCATGCTATACTTGTTTCCTTTACCTGTCAATGCTGATGATATCTTTGTTTGAATTCTTACCTATAGAACCAAGGTAACATTTTTAAATG</genome_strand>
        <mrna_strand>ATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG............................................................................................................................ATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG...................................................................................................AACCAAGGTAACATTTTTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561767" ref_strand="+" ref_description="SGN-E561767 [19011]">
      <seq>gcgtggtggatctgtgaatgatcgatggcgctctcccgacttcgtcatccgttgattttccgagcaccttctcttctacgagctcgccgtcttctcgccgccggtccttctaactcctccacactccgatcgctccatcatgttcctggggtgctgaatctaattcctgatgtggatgcttcttcattaaggcctttaaatttccgcctgctcagtggagtacatgtcataccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctcctttatatgcagaggtgggaatgccagctttgtcccctacaatgactcatggtaatatagcaaaatggataaagaaagagggggagaagatacaagcaggggacgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagacggggctccagaagcgagtcctgcgaatatcagctcatttgaacttcctcctcatatgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106943" stop="96729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106643" g_stop="106504" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="191" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="0.98"/>
            <acceptor a_prob="0.719" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="240" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="274" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="324" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="369" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="443" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="513" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97029" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="676" r_length="163" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E561767" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106643" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCC</genome_strand>
        <mrna_strand>GCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCCCGACTTCGTCATCCGTTGATTTTCCGAGCACCTTCTCTTCTACGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTCTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCTAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTAAATTTCCGCCTGCTCAGTGGAGTACATGTCATACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTTATATGCAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCATGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGAGAAG........................................................................................................................................ATACAAGCAGGGGACGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGACGGGGCTCCAGAAGCGAGTCCTGCGAATATCAGCTCATTTGAACTTCCTCCTCATATGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443156" ref_strand="+" ref_description="SGN-E443156 [cSTA-36-B11]">
      <seq>gtgaatgatcgatggcgctctcccgacttcgtcatccgttgattttccgagcaccttcccttctacgagctcgccgtcttctcgccgccggtccttctaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcctttaaatttccgcctgctcagtggagtacatgtcataccatctaagctacaaagtggtgttcggcacttctcatcagctgaggctcctttatatgcagaggtgggaatgccagctttgtcccctacaatgactcatggtaatatagcaaaatggataaagaaagagggggacaagatacaagcaggggacgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgaaggaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacatacaaaaagtccctgctaccgttggtggtgcatcagaggttaaaaatcaagcatcttctcagacagatgcagcaaggggagacggggctccagaagcgagtcctgcgaatatcagcttatctgaactttctcctcatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106930" stop="96732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106630" g_stop="106504" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="178" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="227" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="311" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="356" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="430" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="500" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97032" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="660" r_length="160" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E443156" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106630" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGA</genome_strand>
        <mrna_strand>GTGAATGATCGATGGCGCTCTCCCGACTTCGTCATCCGTTGATTTTCCGAGCACCTTCCCTTCTACGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTCTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTAAATTTCCGCCTGCTCAGTGGAGTACATGTCATACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCATCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTTATATGCAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCATGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATACAAGCAGGGGACGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGACGGGGCTCCAGAAGCGAGTCCTGCGAATATCAGCTTATCTGAACTTTCTCCTCATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214072" ref_strand="+" ref_description="SGN-E214072 [cLEC-80-A6]">
      <seq>tcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccgggccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcaatgaagtacatgtcgtaccatctaataggctccttcatatacagaggtgggaatgccagctttgtcccctactatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagatttcctaacagattcaagcaggggatggactatgtttgatatagactgataaagcaacgcttgagtttgaaactcttgaagaatgtttccttgcaaagatattggtccctgaaagaacaaaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacataccataagtccctgctaccgttggtggtgcatcaaaggttaaaaatcaagcatcttctcacacagatgcaccaacgggagatggggctacagaattgagtcctgcgaatatcagctcatctgaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106922" stop="96743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106622" g_stop="106504" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="170" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="219" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="100997" i_length="2491">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="269" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="314" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100801" i_stop="100678" i_length="124">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100677" g_stop="100592" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="400" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="470" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97191" g_stop="97043" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="619" r_length="149" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E214072" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106622" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100677" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCC</genome_strand>
        <mrna_strand>TCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGGCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAATGAAGTACATGTCGTACCATCTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACTATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG............................................................................................................................ATTTCCTAACAGATTCAAGCAGGGGATGGACTATGTTTGATATAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAATG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGAAAGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACATACCATAAGTCCCTGCTACCGTTGGTGGTGCATCAAAGGTTAAAAATCAAGCATCTTCTCACACAGATGCACCAACGGGAGATGGGGCTACAGAATTGAGTCCTGCGAATATCAGCTCATCTGAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582690" ref_strand="+" ref_description="SGN-E582690 [8323]">
      <seq>gttgaagcaagcaaagcgtggtggatctgtgaatgatcgatggcgctctcccgacttcgtcatccgttgattttccgagcaccttcccttctacgagctcgccgtcttctcgccgccggtccttctaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcctttaaatttccgcctgctcagtggagtacatgtcataccatctaagctacaaagtggtgttcggcacttctcatcagctgaggctcctttatatgcagaggtgggaatgccagctttgtcccctacaatgactcatggtaatatagcaaaatggataaagaaagagggggacaagatacaagcaggggacgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaagaaggtttccttgcaaagatattggtccctgcaaggaacaacaagatgtaccggtgggacagactatagcaattacggtggaagaagcagatgacctacaaaaagtcctgctaaccgttggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106959" stop="96843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106659" g_stop="106504" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="206" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="255" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="289" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="339" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100592" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="458" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100350" g_stop="100281" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="530" r_length="72" r_score="0.943"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97191" g_stop="97143" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="579" r_length="49" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E582690" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106659" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100592"/>
          <exon e_start="100350" e_stop="100281"/>
          <exon e_start="97191" e_stop="97143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGGGTAAGCCTATATTCCAATTGTGCTGTATTTGCTTAGAACTTAAAAAGAGAAGATTTTCTTTTGACAAGGTAAGTAGTGTTCTTTTATGATGTTATTGCTTTTCTTTACGTACTATGTGATTAGTTTTCTTCCTGATGCTCTTGCTGTTCATAAATGCCTGAAGTACTCACTCTAACCATCCTGTTAACGGATGCACTTCTTTAATGTAATTGGTTTTGTTGTTTGGGGATATTATTTGCAGTTTCCTTGCAAAGATATTGGTCCCTG-AAGGAACAA-AAGATGTACCGGTGGGACAGACTATAGCAATTACGGTAATAAGAGTTCTTAGATATTTCTCCTGCCACTTTTCGTCTTTATTTTCTATTTTGTGATTATCTCCATTCAGTCAAGCACCACAAAATATAAGTGATAATGCTGCATTTTTCTCTTTTTTCTTTCGCTTCTTCTCTGGAATTCTTTGCTGCAAAATGGAAAAAGAAGTCTGTGTTACGCCCCAAGAATTTTTAATCATTTTTTTTTTAAGTTCCTATTATTCTTTTTGTTCGCATTAACAGTAGGTAGCTTAAATGGAATTGTATAGTATCTCTACTTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGAGCATATTATAGATTTGATAGGAAATCTATAATTATTCCTTTTTGGAGGTAGCTAGCATACAGGTATGCTGAAGAATTCAACCTCACCAGTTTCAATAAAAAAAAAAAGGTAACTTAAAAATTCTCATTTTGGGAAGTGGCTGTTCTCTCTGAAAAGTTGTCAACTCCTCCCCCGTTTTAAAATAGTTGTATTCTAACAAAAAAGGCACAGGCTTCTTTGGTTTGCCTATCAGAGACCTGACAGTTGGAAGACTGACACTCACTAGAACAACAAACCGATAGATCAAAGCAGGTTGAAATTGGTGTAAATATGAAAAATTGAAGACTAAGTACATTCCCTCGTGGAAATTGTAGTATTTGTTTTTCTGCAAGTATTGTAGCTACTATCTGATAAAATCAAATATTTTTACATTCTAAGCTTTTCCTGCTAATAAGACTACACATTGCTCTCTTTCTTCAGAAGTTTACTAAAGCCACCATGCTATAAGTATCAGCCAAAGTTCTCTAATTATCAGTCCTTTGTGTCGTGTTTTTGAAGGAAAGCCATACTACCTATGTTTATCTATACAACATTGCTCTTTAAGCCCTAAACCACGAAATGGGTTTGCATTGAACTGTTGAAAGTCAAGCAACCTTGCATTTTTTCTCTCCAATCAGAAAGCATCGTCCTTTTATTGAATTCCAACAGTGTTTGAGCAATTGGAACGGAAGTCGAGAGTTCGTTACACAGGATTGACTGCTACATACAAATTGCAGAGATGATAGAAATGAAATGGCAAGAGGTAGGCAGTCAATGATTCTCTGTTAAGTGATAGTATAGAGGCCTACTTAATGGAGGGGATTTAAGGCCTGATTGTAAATCAGTTTGGAAGACTGAAGCACCTGAGAAGATGGTGTGTTTGAGATGATATATTACGTAGGATGCTGTCAGCAAACAATCTGAGGAAGAGAACGAATATATCCTGGACAGGAACCACCTCATAGTACACTGTAGTTTGCATCAGATATATGGGCATTCATATTTTCCTTGTTTAACTATATTGGGTTTTACTAGATAGTGGCAAATGCTGTAAGAAGTAGTGTTTTTTTTTTGAATCTAAAAAGAGGATGGAGGCGAGAAAAAGAAGATACGGAAGACAATTTCATTGTGCATTCTTGATGATTTGGTTGGAAAGAAGTATATGAATCTTATAAGGATTTAAAAGACCAGCATGGACTCTAAAGGAAATCCTTTTGCTTCACTTGTATTTTGAATTAAATAAATTTTTTCTTTTTGTGCCAATAGTTGGTTAGTTTTTTTGTGATAGCCGAATATTATATATGCTGTCACTTTGAAGCCATCTTGGTTAGAAATTAATTAGAAGTCTTGACTTATCTAAAAGAGTCCTTGTATATCAAAAGATAATTATGAATTTTGATGGATTAGGACACTTCCGTCCTTTGTACTAAAAAAGAATGGTATCAGGTTCTCCTCTTCAAGTATGAACTTGGAGGAGAAAGTAATGTATGCATCACGCAATATATTGATAGTGTCCCGCCTTGAGAGACAACTGCTAATTTCTTTTGTTGTCTTCTTTCTTTCTTTTAAGAGCAGAACTTTTTTCGTTGGTATTCTCGACTGAGTTTAACTCCATTTGTAATGAAGGAAAGGTTTCATTAAAAAAGCATCTAGAAGATGCAAAAGAAGTTGTCTTAGCTCCAATACATGAGAAGAGACTATGATAGGATTAGGGAGCTAATAAAGACCAAAAATTGGCCAGAGCTGTTTACAGGGGTTCAATTTCTCCAGCAAAACAAGTTAAGCAAACATCTAGCTTTTAGGGAGTGTAATGGCATTGAATTTCGTTTTAAACATTTCAGTTCCTTTCTGTCCAAAAAACACTAAAAGATTCTTGGAGGATTATCAATAGATCTTCTTGGTGGCTTTGCCGACTCTCCATAAGCACCAAGTTGAATATGCTTCTTTTTTTTTTTTAAATTATTGCGAGTGGGGTGACCCAGAAGTCCCCAAAAGATGTTCTAGCTACGAAGAACGAGAGGAAGAAAAAGGTAAAAAAAAAGGAAATGGAGGAAGGCAAATGTATAATATCTTCAACTCCATTTATTTGCGGACCAACTCTATCCAGGAGCAAACTGGTAGTCTCTGTTACAATGTTTCTATGTCGTGAAAGAGTTTACCAACTAGGAGGATTTTTTGTCAAATGAATCTTACTGTAGCAGTTCTGTAAAGAATTCCCTGACATGATTGAGATCGAATGGAAGTAGCAAAGATGAAAAGGCAGGAAAGTATTTTAAGCTCAAACTGAAGTTAATAAGAGTGCTTACTGAATACTTTAGGAGGTAAACTCAAGTGGAAACAAGACAGCCTTCTAATAGAAATGGATCCTGGTTTGGAAGGATCTTTATAGACTGCCTAATCCCAGTTTTGTTTTCCTTTTTACTTAAATATAGCCATAACGACAATAATTATCTCATGGCTAATTAGACATGATTGAATGCTTTAAATCTACTAGCAAGTTCTTGTCTTTTGGTTCCTCAATCAGCAGCTCATTTCACTAGAATTAACTAATTTCTCTACCTTAATATGAACTAAACTATGTTCCTCGTCAAAGTTAGGATGACTGTCACCTTTAGATTAAATTCTTGCCATGTTTTTCTGCCTCACTATATTGGATGTCTCAGAGCCTTCTCATTTCCTACATGCTTAGCTTAATCGGGTTGTGTAGACTGCCATGGGCATCTCTTATTGTAAATATTTTTCGCTAATTTGAGTAGGTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCT-ACCGTTGGTGGTG</genome_strand>
        <mrna_strand>GTTGAAGCAAGC-AAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCCCGACTTCGTCATCCGTTGATTTTCCGAGCACCTTCCCTTCTACGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTCTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTAAATTTCCGCCTGCTCAGTGGAGTACATGTCATACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCATCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTTATATGCAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCATGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATACAAGCAGGGGACGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG.................................................................................................................................................................................................................................................TTTCCTTGCAAAGATATTGGTCCCTGCAAGGAACAACAAGATGTACCGGTGGGACAGACTATAGCAATTACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGAAGCAGATGACCTACAAAAAGT-CCTGCTAACCGTTGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306798" ref_strand="+" ref_description="SGN-E306798 [cLEY-11-O7]">
      <seq>tctgtgaatgatcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccggtccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcagtgaagtacatgtcgtaccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatacagaggtgggaatgccagctttgtcccctacaatgactcaaggtaatatagcaaaatggataaagaaagagggggacaagattcaagcaggggatgtactatgtttgatagagactgataaagcaacgcttgagtttgaaactcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106933" stop="100297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106633" g_stop="106504" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="181" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="230" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="264" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100947" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="314" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100846" g_stop="100802" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="359" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="100665" g_stop="100597" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="428" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E306798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106633" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100947"/>
          <exon e_start="100846" e_stop="100802"/>
          <exon e_start="100665" e_stop="100597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATGGTAATCTTAGTGGCATTATTTCTATGAATGATGAAGTTTTCTGCTTATCATTTCCTTATTATTGTGGAAATTCTTAACTTACATGTTCATCTCACTGCAGACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAGGTCAGTTGATTTCATGGCTACCGAAAGTTAAATTAGTACAATCTTTTAGACAAAGATAATGCCTGCTGAAGTATAAAGGCTCAACAACTAACATTTCTATTTTATTACACTTTGTTAAATTCGGATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAA</genome_strand>
        <mrna_strand>TCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG....................................................................................................ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG........................................................................................................................................ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336245" ref_strand="+" ref_description="SGN-E336245 [cTOE-10-P23]">
      <seq>aaaagcgtggtggatctgtgaatgatcgatggcgctctctcgacttcgtcatccgttgattttccgagctccgtcgctactccgagctcgccgtcttctcgccgccggtccttgtaactcctccacactccgatcgctccatcatgttcctggggtgctgaatcaaattcctgatgtggatgcttcttcattaaggcttttaaatttccgcctgctcagtgaagtacatgtcgtaccatctaagctacaaagtggtgttcggcacttctcgtcagctgaggctccttcatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="106947" stop="100681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106647" g_stop="106504" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104830" g_stop="104780" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="195" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="244" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103411" g_stop="103378" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="278" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100996" g_stop="100981" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="294" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E336245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106647" e_stop="106504"/>
          <exon e_start="104830" e_stop="104780"/>
          <exon e_start="103536" e_stop="103488"/>
          <exon e_start="103411" e_stop="103378"/>
          <exon e_start="100996" e_stop="100981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCAGTACGCTTTCCTCTTCACATTTTTATTGTCATTTTCTGAATCGTTGTAATTTGATAGCTCAAAAGCCTGTAATCGATTATACTTGTTGTAATATGGATTATAAATTGCTTAATGTTCGCGTTGATTTTAGATATAAGCTCAAAAAACAAGGAGAAATTAGAAATGATTATATATATGTGTGTGTGTTGGCTGCGCGTTCGGATTATGTAGCTATAGGCATTTGAGATTGAATGATATTTGGTTAATTAGGCTAGAAGAAGCAAATAAGTGTGTGGTGTAATGCATTATTCAGTTTTGCTCCATTTTAATGAACTGTTTGGACTTTGGAACCTTGAATATTAGTTTGATTTATGGTGTAAGTTACTTGGTTTGCTGTTGAGTAATTTGAAGATTTTCTTCTAGTTAGAGGAGTTATTTTTTAAGATCACATGTAGCAGTTTGAGGGAGTTCTTCATCTAGTAATCTTTCTTCCAAAGGTTCCTATCGTCATGTTTAGGATGTGGATTGGGGGTTCATCATGGTGGAAAATTTCAGTCGTGAAAGAAGAAGATTGTGATGTTTTTAGGTAATATTCATTCAAACTAAGGGTATACAGTGCATTTCCAAAGGCATGCTAATATGTCAATTTTAAGAAAATCAAGGCATGCTAATATTTCTGATTATGAATAAAAGTAGGCTTAGATGGAAAAGAGGATTGCAGGATTGGTTATACTTTGTGAGAAATGAAATGGAACTGGGTGCCTCATTGGTTGCAGTATTTCTTGTAAATTGAAAGCTTGTACTTTTTATAGAAAAAAGATATCAAAGATGAAGTAATAAAAGGAGTAACAAGAAAAGCAAGCTCAAAAAAAACAAGAATGGAAGGCGTTGGAGTGCTCTAAACTTTGAACTTGTGGATAAATTTGGTGGGCAAGACAACTATATTTAGTGACAAAGAAGGAAAGATCTTCCTGTTGATTCTTTGTTTCTTTCCTCATAAGCCTTTTGTGCATGTATATTAAGTGCTTTTTTAGTCCATATTTGTTCAGTGATAAACAAAAGGAGAATCATTTTTTTTTATGTTGGGTTGAATAACGCAGCATTGAGATTGCACCCCTTCAATATAGTTTAAATAATTTCATTATTTAATAAAGAAAGTGGGGTGATGCACCAATGTTTTTAGTCAAGTACTTCTATTGATGTATGCCAGCAAAATACTGGAGTAATTGCTGTCTTATTATCAGTCATTTTGCATACGAAATTTGGACAAGAGACCTCTACTTTCACTGAATTCCCCAAGTTCCAATGATTGTAATGTTTGTTCGGACTTTTTAAGAAGATGCATTCTTTCTTGAGCACTTTGGCAGAATTTAATGTGTATTTTGATGTTTATTATTTCCATGCACCTAAGAGTGTGGACTAGTGGTTAATAAAAATGAGGTAAATAGTGGAGATCAAGGAAAAAAGCATGTAGGTGATTTCTTCGCATCTGCCTAAGCCTTGGTGGGCAAAGTTACCCGATAGTTGGTTCTATACAAGCTGGCGGTAGCAGGTACCTAGTAGAATAGTCAAAATACGAATAGCCTTGCCCGAAAACCACCATCATAAAAATGATGCTCATTTTTCCCTTGTTAATATTTATGAAATACATTTATTAGATTTGCAAATTTTCATTAATCATTTATTGGCTGCAGTGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAGGTCTGATGTTAGTCCATTCTAGTGGTTTACGGAATTGTGCCATCTCAACTTAAAAGGTGTAACTGACATTTTTTTTAATAAGGTGTAACTGACATAATTTCTTCTCAAAGAAAAGTTCACTAACACAATTTTTCCTTTCCCAGAGAACTTTTGTTTAGTATTAAGATGAATGTCTTTTCTTGTCCTATAGAAACTCCAACCCAACTCAATAGTTTTCCAGATTTCATGTGGTTGAGTAGGGCAGTTGTGCAATGATGGATACGTTTCCTCAGAAGGGCCTAGCATAATGACTAATGTTTCTGCCTCCCTATCATGTCTGTGGTGGCATGAGTCCCACATTGATGTTTTTCTTTTGCATAATTTATAGATGCTGGATATGAGATGATACTCCCTCTATCTCAAAGAGAAACTTTATCTATACACTCCTTGATATGGTTTAAGATCTTGTTGAGAAAAAGAAGGTTATTTAGGGACATATATTCCTTAAAGTTCAAATGTAAGGACGTCGAGATGATGCAAAGTTACAAGAAGATGGAAAAGGAATGAACAATAACAAAAGCTTCACCTGAAGAGTCCTAAGATCTGACTACATTAACTTCTTTTATATGTGTGATGAAGAAACTGATTTATCTAGTAAACCTGACTATCACTCTGTTGTCAATCATGTCCAGAAAGATCCTTCTTCCAAATGATGGCTCATGGCCATAAGTCTTCAGCATTCACATGTATGATTGCAGACAATTTGAGTCTCTGTCTCTCTCTCCACGACTACCAACCTATTGCTATCTGACTGGGATATAAGCTATGAATAAGATGATGGCGTATCTTCAGAAATTTATGGCTGAAATGGATGTGATAAAATTTTAGGGACTCCTCAATTAAATTGTTCTATTTTACTATGGCCACTAACTGGATTTCTCATGTCATATGCTCAGTGAATAAAATTTTTGAGAGATTGATATTTTGATCTGATAACCATCTAAATTTTGACTTTTAGCTGTAGTTTTTAGCTTGGAGTGCCAATACTAATAGTAGCATAGTTGCTTAGTTAGTCTTTGTCTTTGCATATTACAATCTTACTGATTATCATATGGCTTCTTTAGACATTAAGTTGCATCAGTGTCATATTTTCATTGAACTAAATGCAATTATTAATTATTAATCAGCTGAAGGTAGTTTAATCTGCTCCATAATTGTTTTTTCTCAAAACATATTCTGTTCAATGACTTTGAAGTTTGGTCAGGCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAGGTTAGTTGCAACACATGTCTTTCCATTAAATTTCATTACTTTATGTTTCCTTGATTCAATGGTGGAAATGTTGCAGCTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTGGTAAGCACACTATACAAATGATGTTGCTCCCACCCAATGCTGTTATCTTTCCAGATATTTATAGATTGCTTTCAGTAACTTCCACCATCATATCTTGAATTTCAAGTGCAACACGGAATGAAAAATTAGTAAGGGGCCCATCTGATAAGAGCATATAAAAAGAAAAGTGGAATACAACTTAAGAAACTCTTTCAACTTCTAACATCTAAGAGAAATTGCATGAAACACGTGATAAGTCCTTTCCCGTTGGTCATGTTAGTAACATTATTTGTAGGAGATCGTTGCTTTGATCATGTTCTTATATCTAACTTGAACTCCTCATTTATACTGTTTTACTATAACAAGTAGCCCCTTCATATGTCATCATTTCATTGCATAATAGGGATGTGTTTCTTGGAGCTCCCATGTTTTTTTAAAATAATAAATAAATCGAAATATAAAGAGATGGAGCCAGTGCAAACTAAGCTAAAGATAGCGCACAATGGAAAGAATGATTCATATAGGTGATATCTACTAGTTGGACATAGGTTTTAGCGTGTTAGAGAACTTCTAAAACTATTACTCCCTCCACCTCATTATGTGGCACCCTTTGACTTGGCATAATGTTTAAGAAAAAAAGGAAGACTTTTGAAACTTATGGTCTAAAACATTCCTTGGATATTTGTGTGGTTGAGATTCATTTCATTAAGGGTAAAAAGGAAATTTCAAAATTAAATTGTTTGTAATTATAGTAAGTAGACATTCTCTTTGGGACGGATTAAAAATGACAGGGTTCCATATAAAATTTGATAGAGGGAGTATTATAATTACTATCTCCGTATCAAAATAAGTGCACTTCCCTTTTTAGTTTGTACAAAAGAATGCCTCTATCTATTTTCGGTAACTCCTTGAACCCCATATTTTACATGGCATGTTTATTACTAGAAGATTAGAGGGCAAAGGGACCAACAGCCTGAAGATTAGAATCCAATGCCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACCTTAGTTTACTTTATTTTTGGTGTAAACAGGATATTGTAGGGTATAAAGTAGACATAGTTGACTTCATAGGTAACTTGTAAAGTTTTTCTGTTGAGTAGTCCTCACTGAGGAAAGTGCACATACCATGTGGATTGTAAATGTTCCTATCATCTTTTGTTGATGACTTTTTTGTGAATACAAAGTTGCCTTTACTCCAAAAAATAAAATAGTTTCAAAGGGCATTTTTCAACATTACACACATCTTTAGTTTAAGACCACAAAATTCAAAAGTCTCCCTTATTTCTTAATCTTAGTGCCTAGTCAAACTAAGATAGTTAAACTGAAACAGAGGGAGTATTAGTTGTATATACTTTATTTATTTTTCACTTTCATTTTTATTTGGTATGATGATGATATGAGTTGAGCTTAAATGGAGAGGTGAGGATTCATATAGCCGACCCCGATATCGCCGACCGTGACTTGCTTGGGACTGAGACATAGTTGTTGTTTGAATGATAAAGAGATGGAATGATAATTCACATTCTCCGACCTGATGCTCAAATCTGATGTTTCGGAGACTTCTGGTTTATAGAATGTATTTACTTTTAAGTGTTATCTTGTACTTCAAATATTCCAGTGGCTGTTCCATTACCCTGATTCATTTGGGAAGACATAAGCCTCTTTAAATTTATACATGTGTTTGTTATGTGGTTCAACACTTTTGATCACCTCACCTGCTACAGATAATTTTAAAGAAGCCCGACAAGGCAATTTTGGTCCTAGCTGATGCATGCTAAATCTGAGGTGTTTCCTATTCAGCAAATGTTAGATTACTAAATGTGTATTTTGTGTTCTCCAAATATATGATTTCGTCATCTGCTTATCAGTTTAGTATATGCTATTTGGACGTTGAATCACGTGTATTAACTCAATTCTTCTTCATCTAGTTCAGTGGCCCTGGAAAGTGTAAGAATGTTTAGCCTTAAGATAGAAAATCTGGCTAATGGTGCATTTAGTTGTAACATAATTCAGAAACATTAAAAAGCAGTTAAATCTCTGACTTCCATGTGCGATGGGATAGTCTTTTAGCTTCTAAGGTGTTAGGCATGTCATGCTCTCCAAGATGTACTGGAGAGAATGTCTTATTCCATTAAGATATATATATATTTCCCCTTCGGTTAATTTATTTTCTATTTTAGAAAGACAGTGGAAAGATATTTGGTGACCTTCAGACACGTTATACAACTTTTATCTTGAACTGTGTGAGAATCTACTGATAATATGGGATCTTATGTGGCAGAAATGAGGTCTTTCTTTGTTAAATGTTATAATACTTATTTCCTACTATTGCAGAGGCTCCTTCATATAC</genome_strand>
        <mrna_strand>AAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG............................................................................CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234073" ref_strand="+" ref_description="SGN-E234073 [cLEL-8-N17](-)">
      <seq>atggaaagttcaactgtagtaatgacatgtttgtcaaatggatatccagttattgcaattcgtggattatcggatttagcaggaacacaaaaaggggataacacaataagattatttggctctttagctgctctaaatacagcaaaagttgtaattgattttgttaagtcactcccgataaatcacgtttcgcaattctagctaaaatattatcggagatgaatttagagcaggttctataagtttcaactaaacttattaatattgctccaattatgtatttgtacgcataaaaatatttcaatgtatacgtataataagatcacacgcttattatgaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="109399" stop="14283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109386" g_stop="109363" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109362" i_stop="109093" i_length="270">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109092" g_stop="108774" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="343" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108773" i_stop="106715" i_length="2059">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106714" g_stop="106697" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="361" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E234073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109386" e_stop="109363"/>
          <exon e_start="109092" e_stop="108774"/>
          <exon e_start="106714" e_stop="106697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGTTCAGCTGTAGTAATGGTAACTTGCTTTTCCCGTTTAAGTTATATAAATCGTCAGTATAAAATATGATTAGATGGCTGATTGAAAAACACTGACTATAGTTAAACTCATAATATACCAGCTTTATTTGTCTTTAACTACGTGCAACCGTTCATAAAAAGTAGATAAGTAACACTGAAAATAAGACAGTTACTTATTATAACATGTTAAAATATATAATCAATCTAAATTTAAATATATTTTTTGCAATATTTATGCATATATAAGTTAATTTTTTTTTTTGTGTAGACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTCTATAAGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATACGTATAATAAGATCACACGCTTATTATGAATCAATTTTCTCTTTGCTCCATAATGTTCAATTTTTTAAAATTAGAATTTGATAAATTTATAGGATCTTTGATTTAATATTAAAAAATTTACTATTATTACCTGTTGTACTAATGACTAAATATGCATTTTACATAATATTATCATATTTTACTCAATCATGAACCCAAACAGACCTACTATTTTTCATTCAAATTCCTCAAAAAATTTTTGCAAACTCAAAAAAGATAAATAAGAATAACAAATATAAATTTTATTTGACCATCTTCTTTTTCTTATTTATTTATTATTTTTCCATATATTTCCCATTCATCATTGTTTATGTATGAATATGCTATTTAAAAAAATTGAACGTGTTATAATACGTATGTGGTCCAATAATAATAAAGTAAAATAAAATATACTAAAAAACGTAATTTAATTATTTAAAAATGGGAGAAAAAGATATTAGTACATTAATTTGGAAATATAGGGTTTGCATTAGTTACACTCGAAAAATTCTTAAATTTACAAAGAAATTATTTGATTCGAATATAAATTAAATAAGAAACTAATTATATCATGTAAATTATAAATATTAAATTTGTTGAAGTGCGTGAATAAGGTAATTAAAAATTCTAAATACTTTTATAAAGGACACAATATAGGAGTTGGTGCCCAATAAATTATTAAATTCGTTAAATTAGTACATAATCTGCAAACATGAAGACAAAACCACCATTCATGATAAGAAAGAGCCATTTAGACATTCAATTAAATACATTTTTTTTTTTTAAAACTTTTAATCACTTCTTTCACATTTTGTTTATTTATTTATTTATGTTAAACTGGAATAAAGAAGTGGATTAAATTATTAATTCCCCATAGGCATCAAAATTAGACCAAAAGAATCATTGCCACCAACCCCCCTACTTTTTTTCCTAGCCCACCCCTATTATCGTAATATCATTATTTTCAGGGAAAATGGTTTGATATATTCCTCAACTTTTATTATTTGGAGCTGATATATCCCTCGTTATAAAAGTGGCTCATATATGTCCTAAACGACTCACATATACCCCTGCCGTTACAAACTGACTTACATATGCCCTTCATTGAACGAAAATTAAAAAATTAGTTTTAAATTTATATTTATTATTTCTAATTTAAAAAATAAAATAAAATTAGGGGTATATATAATTCTTCTATCAAAATTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGACTTCTTTTACTTTAATTATTTGAGTTTCTTATTCTTATTTTTTTTTCTTACATTCCTTAGTTTAAAGAAAAAAAGTTAAACTATTTTTTTGTGTGTATTGTAATTTAATTTCGTATCGAAGAAAAAGTTTGGTCATCTACAACAAGTTTTACAAGAATATCAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTAAAACAAAAAAAATCAAAAAAAATATGTTTGACGAGGACTAAATTTAATCATATGGGATTATATTTTTTTAGAAAAAAATAATAAAAATTTAGATTAAAATTATTCATTTCCGTTTAGAGAAAAAGGGTATATGTGAGCCATTTGTTTATAAGTAGGAGTATATATGAATCACTTTCGTAACAAGGGGCATATCAGCTATAAATGACAAAGTTAAGGAATATATCAGACCCTTTTCTCTTATTTTCATTTCAAAAACTTAAATAAAAAAGAACAAAATAATTTATAAGAATAATCGAATTGATTAAGCAAGTAGAGATCTACTGAATACTATCTCGATGTCTTGCAAACTATTACATCGAATCAAAGTTTATCTTATGTAAATTTTCCTTATTTACAAAAAAAAAAAAACTATACAACATATTACCATTATTTCACAATAATTTAATTATAAACTAAAGTAATAATAGTGTTATAAAATTAAATACATCTTATAAAGTCGCATAAAATTTTGATATTTTGAACCAATACTCAAACATAAGGGACCATTTTTGCCATTTGCTAAAAGTTATTGGGTTGATATATATTTTTTATACTTTGTATATTGTTTTCAGCGAAAAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>ATGGAAAGTTCAACTGTAGTAATG..............................................................................................................................................................................................................................................................................ACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTCTATAAGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATACGTATAATAAGATCACACGCTTATTATGAATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372003" ref_strand="+" ref_description="SGN-E372003 [TUS-30-K24](-)">
      <seq>aaccaaatgcaactatgaaaccaaatgattttgctcaatttaatttcaagagctacaatgatcctaaaggaggggaaaatcagttgggaaaagtaggatatagcactgaacagttttactcagttgcaggggaagtcaatgtgcctcaaagaccagtttggtttaacataaccaacaattggcttcatttagcctctcatttgcatgggataaatcttgatcaatgtgcaaattcaacgttgtgtctaccagaaaagccaaaactagttgttggattgaagggagctacttcaaattttttcattgacaatgcagcttacacacaattccttttcaatacttttggtgtcacatcacttgacatggaaagttcagctgtagtaatgacatgtttgtcaaatggatatccagttattgcaattcgtggattatcggatttagcaggaacacaaaaaggggataacacaataagattatttggctctttagctgctctaaatacagcaaaagttgtaattgattttgttaagtcactcccgataaatcacgtttcgcaattctagctaaaatattatcggagatgaatttagagcaggttctataagtttcaactaaacttattaatattgctccaattatgtatttgtacgcataaaaatatttcaatgtatacgtataataagatcacacgcttattataatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="110789" stop="108473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110489" g_stop="110284" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110283" i_stop="109543" i_length="741">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109542" g_stop="109363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109362" i_stop="109093" i_length="270">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109092" g_stop="108774" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="704" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E372003" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110489" e_stop="110284"/>
          <exon e_start="109542" e_stop="109363"/>
          <exon e_start="109092" e_stop="108774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCATGTAAGTAATATTAGTACCATCGAATCAGGTCAATTTGCACGCACTTTAATTATACCTTCGATTATATTTATTATCTCTCCTTGTATAGGTGGGATCTGAACCCCCTTCGTCAGTTATTACATTATATGTATATAGTAGATGATGAATCCCTTGATAAAGATTAGGCATAATGCATAAACATGACTCTTAACTTTGTTTCTGCAAATAACTATGCCCTCCAACGTTGAGTGTGTATAAGTAGACAGTTAAACTTATATAAAGTTGAACAAGTAGACACGCGCGACCTACATGACATAATACACGTAGGATGCAGGACGTCACGTAAGATGCAAAATTGTCATGTAGGACGAATGTGTCTATTCGATTAATTTTAAACAAATTAAATGTCTATTTGTTCATACCAATGTTAAAGGTCATAATTATCGACTGAAGTCAAGTAGAGAGTCATCTTTATGTCTTCGTCACTAAGTACAAATACCAGATAACTATACAGTCTATATCCATCAAGTGGAGACGGATCTAGGATTTAGATTTGACAGCTTCAAGTTTTAAGTTTTTACATTGCTGCGAAAAAACAATTTTCTTGAACCGAAGGTCTATTAGGAACAACCTCTTTACCTCACGGAGATAGGAATAAGATCTCCGTACACCGAACCTTTCCAAATCTCACTTGTGGAACATCTTATACCACTTCTTTATGGTTATTTGTTGTAATTATGATGTGTTGGATGAAATTAACAGGGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACACAATTCCTTTTCAATACTTTTGGTGTCACATCACTTGACATGGAAAGTTCAGCTGTAGTAATGGTAACTTGCTTTTCCCGTTTAAGTTATATAAATCGTCAGTATAAAATATGATTAGATGGCTGATTGAAAAACACTGACTATAGTTAAACTCATAATATACCAGCTTTATTTGTCTTTAACTACGTGCAACCGTTCATAAAAAGTAGATAAGTAACACTGAAAATAAGACAGTTACTTATTATAACATGTTAAAATATATAATCAATCTAAATTTAAATATATTTTTTGCAATATTTATGCATATATAAGTTAATTTTTTTTTTTGTGTAGACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTCTATAAGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATACGTATAATAAGATCACACGCTTATTATGAATCA</genome_strand>
        <mrna_strand>AACCAAATGCAACTATGAAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACACAATTCCTTTTCAATACTTTTGGTGTCACATCACTTGACATGGAAAGTTCAGCTGTAGTAATG..............................................................................................................................................................................................................................................................................ACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTCTATAAGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATACGTATAATAAGATCACACGCTTATTAT-AATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580028" ref_strand="+" ref_description="SGN-E580028 [87163]">
      <seq>tgcaaattggagatgtcacaatcccagggcaacttgcacaaacagggctttgggattggctgaaaccaaatgcaactatggagccaaatgattttgctcaatttgatttcaagagctataatgatccaaaaggaggggaaaatcagttgggaaaagttggatatagcactgaacagttttactcagctgcaggggaggtcaatgtgcctcagagaccagtttggtttaacataaccaacaattggctttatgtagcctctcatttgcaggggataaaactggatcaatgtgcaaattcaacattgtgtctaccagaaaagccaaaactagttgttggactgaagggagctacttcaaactttttcattgacaatgcagcttacacacaattccttttcaaaacttttggtgtcacatcacttgacatggaaagctcagctgtagtaatgacatgtttgtcaaatggatatccagttattgcaattcgtggattatcagatttagcaggaacacaaaaaggggataatacaataagattatttggatctttagctgctctaaatacagcaaaagttgtaattggttttgttaagtcactaccaataagtcatgtttctcgattctagctagaatattatcggagatggatttagagcaggttctatatataagttcgactgaacttattaatattgctccaattatgtatgcgtatgcctaaaaatatttaaatgtgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="111229" stop="108506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110929" g_stop="110868" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110490" g_stop="110284" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="269" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110283" i_stop="109543" i_length="741">
            <donor d_prob="0.938" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109542" g_stop="109363" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="449" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109362" i_stop="109093" i_length="270">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109092" g_stop="108806" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="739" r_length="290" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E580028" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110929" e_stop="110868"/>
          <exon e_start="110490" e_stop="110284"/>
          <exon e_start="109542" e_stop="109363"/>
          <exon e_start="109092" e_stop="108806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCATGTAAGTAATATTAGTACCATCGAATCAGGTCAATTTGCACGCACTTTAATTATACCTTCGATTATATTTATTATCTCTCCTTGTATAGGTGGGATCTGAACCCCCTTCGTCAGTTATTACATTATATGTATATAGTAGATGATGAATCCCTTGATAAAGATTAGGCATAATGCATAAACATGACTCTTAACTTTGTTTCTGCAAATAACTATGCCCTCCAACGTTGAGTGTGTATAAGTAGACAGTTAAACTTATATAAAGTTGAACAAGTAGACACGCGCGACCTACATGACATAATACACGTAGGATGCAGGACGTCACGTAAGATGCAAAATTGTCATGTAGGACGAATGTGTCTATTCGATTAATTTTAAACAAATTAAATGTCTATTTGTTCATACCAATGTTAAAGGTCATAATTATCGACTGAAGTCAAGTAGAGAGTCATCTTTATGTCTTCGTCACTAAGTACAAATACCAGATAACTATACAGTCTATATCCATCAAGTGGAGACGGATCTAGGATTTAGATTTGACAGCTTCAAGTTTTAAGTTTTTACATTGCTGCGAAAAAACAATTTTCTTGAACCGAAGGTCTATTAGGAACAACCTCTTTACCTCACGGAGATAGGAATAAGATCTCCGTACACCGAACCTTTCCAAATCTCACTTGTGGAACATCTTATACCACTTCTTTATGGTTATTTGTTGTAATTATGATGTGTTGGATGAAATTAACAGGGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACACAATTCCTTTTCAATACTTTTGGTGTCACATCACTTGACATGGAAAGTTCAGCTGTAGTAATGGTAACTTGCTTTTCCCGTTTAAGTTATATAAATCGTCAGTATAAAATATGATTAGATGGCTGATTGAAAAACACTGACTATAGTTAAACTCATAATATACCAGCTTTATTTGTCTTTAACTACGTGCAACCGTTCATAAAAAGTAGATAAGTAACACTGAAAATAAGACAGTTACTTATTATAACATGTTAAAATATATAATCAATCTAAATTTAAATATATTTTTTGCAATATTTATGCATATATAAGTTAATTTTTTTTTTTGTGTAGACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTC--TATA-AGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATAC</genome_strand>
        <mrna_strand>TGCAAATTGGAGATGTCACAATCCCAGGGCAACTTGCACAAACAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................AAACCAAATGCAACTATGGAGCCAAATGATTTTGCTCAATTTGATTTCAAGAGCTATAATGATCCAAAAGGAGGGGAAAATCAGTTGGGAAAAGTTGGATATAGCACTGAACAGTTTTACTCAGCTGCAGGGGAGGTCAATGTGCCTCAGAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTTATGTAGCCTCTCATTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAACTGGATCAATGTGCAAATTCAACATTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGACTGAAGGGAGCTACTTCAAACTTTTTCATTGACAATGCAGCTTACACACAATTCCTTTTCAAAACTTTTGGTGTCACATCACTTGACATGGAAAGCTCAGCTGTAGTAATG..............................................................................................................................................................................................................................................................................ACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCAGATTTAGCAGGAACACAAAAAGGGGATAATACAATAAGATTATTTGGATCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGGTTTTGTTAAGTCACTACCAATAAGTCATGTTTCTCGATTCTAGCTAGAATATTATCGGAGATGGATTTAGAGCAGGTTCTATATATAAGTTCGACTGAACTTATTAATATTGCTCCAATTATGTATGCGTATGCCTAAAAATATTTAAATGTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293259" ref_strand="+" ref_description="SGN-E293259 [cLET-18-E23]">
      <seq>aaagtcatttatgtgaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggacttgtttgacataaaagggataattcattttggcatctctggtaatgctaacagttctatgcaaattggagatgtcacaatcccagggcagcttgcacaagcagggctttgggattggctgaaaccaaatgcaactatggaaccaaatgattttgctcaatttaatttcaagagctacaatgatcctaaaggaggggaaaatcagttgggaaaagtaggatatagcactgaacagttttactcagttgcaggggaagtcaatgtgcctcaaagaccagtttggtttaacataaccaacaattggcttcatttagcctctcatttgcatgggataaatcttgatcaatgtgcaaattcaacgttgtgtctaccagaaaagccaaaactagttgttggattgaagggagctacttcaaattttttcattgacaatgcagcttacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="111700" stop="109126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111400" g_stop="111368" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="189" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110490" g_stop="110284" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="396" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110283" i_stop="109543" i_length="741">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109542" g_stop="109426" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="513" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E293259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111400" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
          <exon e_start="110490" e_stop="110284"/>
          <exon e_start="109542" e_stop="109426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCATGTAAGTAATATTAGTACCATCGAATCAGGTCAATTTGCACGCACTTTAATTATACCTTCGATTATATTTATTATCTCTCCTTGTATAGGTGGGATCTGAACCCCCTTCGTCAGTTATTACATTATATGTATATAGTAGATGATGAATCCCTTGATAAAGATTAGGCATAATGCATAAACATGACTCTTAACTTTGTTTCTGCAAATAACTATGCCCTCCAACGTTGAGTGTGTATAAGTAGACAGTTAAACTTATATAAAGTTGAACAAGTAGACACGCGCGACCTACATGACATAATACACGTAGGATGCAGGACGTCACGTAAGATGCAAAATTGTCATGTAGGACGAATGTGTCTATTCGATTAATTTTAAACAAATTAAATGTCTATTTGTTCATACCAATGTTAAAGGTCATAATTATCGACTGAAGTCAAGTAGAGAGTCATCTTTATGTCTTCGTCACTAAGTACAAATACCAGATAACTATACAGTCTATATCCATCAAGTGGAGACGGATCTAGGATTTAGATTTGACAGCTTCAAGTTTTAAGTTTTTACATTGCTGCGAAAAAACAATTTTCTTGAACCGAAGGTCTATTAGGAACAACCTCTTTACCTCACGGAGATAGGAATAAGATCTCCGTACACCGAACCTTTCCAAATCTCACTTGTGGAACATCTTATACCACTTCTTTATGGTTATTTGTTGTAATTATGATGTGTTGGATGAAATTAACAGGGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACA</genome_strand>
        <mrna_strand>AAAGTCATTTATGTGAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................AAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449045" ref_strand="+" ref_description="SGN-E449045 [cSTS-5-O5]">
      <seq>ctctgatattggctttgggatttatccctttacttgtattttctgcccaagcaattccatttgaaagattggaatctttaagagttgtcaaaaaagttaacaaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctaatcctagacacccctttgttgacttatcaggtagacgatttcggattgggaaagttgagggcaaaaaaagtcatttatgtaaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggatctgtttgacataaaagggataatccattttggtatctctggcaatgctaacagttctatgcaaattggagatgtcacaatcccagggcaacttgcacaaacagggctttgggattggctgaaaccaaatgcaactatggagccaaatgattttgctcaatttgatttcaagagctataatgatccaaaaggaggggaaaatcagttgggaaaagttggatatagcactgaacagttttactcagctgcaggggaagtcaatgtgcctcagagaccagttttgtttaacataaccaacaattggcttcatgtagcctctcatttgcaggggataaaactggatcaatgtgcaaattcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112042" stop="109211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111742" g_stop="111530" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="282" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="438" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110490" g_stop="110284" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="645" r_length="207" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110283" i_stop="109543" i_length="741">
            <donor d_prob="0.938" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109542" g_stop="109510" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="678" r_length="33" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E449045" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111742" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
          <exon e_start="110490" e_stop="110284"/>
          <exon e_start="109542" e_stop="109510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGC-AAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCATGTAAGTAATATTAGTACCATCGAATCAGGTCAATTTGCACGCACTTTAATTATACCTTCGATTATATTTATTATCTCTCCTTGTATAGGTGGGATCTGAACCCCCTTCGTCAGTTATTACATTATATGTATATAGTAGATGATGAATCCCTTGATAAAGATTAGGCATAATGCATAAACATGACTCTTAACTTTGTTTCTGCAAATAACTATGCCCTCCAACGTTGAGTGTGTATAAGTAGACAGTTAAACTTATATAAAGTTGAACAAGTAGACACGCGCGACCTACATGACATAATACACGTAGGATGCAGGACGTCACGTAAGATGCAAAATTGTCATGTAGGACGAATGTGTCTATTCGATTAATTTTAAACAAATTAAATGTCTATTTGTTCATACCAATGTTAAAGGTCATAATTATCGACTGAAGTCAAGTAGAGAGTCATCTTTATGTCTTCGTCACTAAGTACAAATACCAGATAACTATACAGTCTATATCCATCAAGTGGAGACGGATCTAGGATTTAGATTTGACAGCTTCAAGTTTTAAGTTTTTACATTGCTGCGAAAAAACAATTTTCTTGAACCGAAGGTCTATTAGGAACAACCTCTTTACCTCACGGAGATAGGAATAAGATCTCCGTACACCGAACCTTTCCAAATCTCACTTGTGGAACATCTTATACCACTTCTTTATGGTTATTTGTTGTAATTATGATGTGTTGGATGAAATTAACAGGGGATAAATCTTGATCAATGTGCAAATTCAACG</genome_strand>
        <mrna_strand>CTCTGATATTGGCTTTGGGATTTATCCCTTTACTTGTATTTTCTGCCCAAGCAATTCCATTTGAAAGATTGGAATCTTTAAGAGTTGTCAAAAAAGTTAACAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTAATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGGATTGGGAAAGTTGAGGGCAAAAAAAGTCATTTATGTAAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGATCTGTTTGACATAAAAGGGATAATCCATTTTGGTATCTCTGGCAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAACTTGCACAAACAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................AAACCAAATGCAACTATGGAGCCAAATGATTTTGCTCAATTTGATTTCAAGAGCTATAATGATCCAAAAGGAGGGGAAAATCAGTTGGGAAAAGTTGGATATAGCACTGAACAGTTTTACTCAGCTGCAGGGGAAGTCAATGTGCCTCAGAGACCAGTTTTGTTTAACATAACCAACAATTGGCTTCATGTAGCCTCTCATTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAACTGGATCAATGTGCAAATTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372004" ref_strand="+" ref_description="SGN-E372004 [TUS-30-K24]">
      <seq>aaaaattgtaatgtagaccgtcttcctgatgaatacgaaaaattccgactccaaccctacttccattagaaaattgataaaccttttgtgtaatttttttgttatatataactcaacattgttaagcctaaaattatggacaaaacttgttgcagttcaataaaaaatggctgcaaaacaagttgtccttctatttactcttatattggctttgggatttatcccttttcttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaagttaataaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctgatcctagacacccctttgttgacttatcaggtagacgatttcgaattgggaaagttgagggcaaaaaagtcatttatgtgaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggacttgtttgacataaaagggataattcattttggcatctctggtaatgctaacagttctatgcaaattggagatgtcacaatcccagggcagcttgcacaagcagggctttgggattggctgaaaccannatgcactatggaaccaaatgattttgctcaatttaattcaagagctacaatgatcctaaaggaggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112239" stop="110111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111530" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="478" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="634" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110490" g_stop="110410" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="714" r_length="80" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E372004" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
          <exon e_start="110490" e_stop="110410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGTAATGTAGACCGTCTTCCTGATGAATACGAAAAATTCCGACTCCAACCCTACTTCCATTAGAAAATTGATAAACCTTTTGTGTAATTTTTTTGTTATATATAACTCAACATTGTTAAGCCTAAAATTATGGACAAAACTTGTTGCAGTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCA-AATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAAT</genome_strand>
        <mrna_strand>AAAAATTGTAATGTAGACCGTCTTCCTGATGAATACGAAAAATTCCGACTCCAACCCTACTTCCATTAGAAAATTGATAAACCTTTTGTGTAATTTTTTTGTTATATATAACTCAACATTGTTAAGCCTAAAATTATGGACAAAACTTGTTGCAGTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................AAACCANNATGC-ACTATGGAACCAAATGATTTTGCTCAATTTAA-TTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287121" ref_strand="+" ref_description="SGN-E287121 [cLES-6-C18]">
      <seq>aaaaattgtaatgtagaccgtcttcctgatgaatacgaaaaattccgactccaaccctacttccattagaaaattgataaaccttttgtgtaatttttttgttatatataactcaacattgttaagcctaaaattatggacaaaacttgttgcagttcaataaaaaatggctgcaaaacaagttgtccttctatttactcttatattggctttgggatttatcccttttcttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaagttaataaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctgatcctagacacccctttgttgacttatcaggtagacgatttcgaattgggaaagttgagggcaaaaaagtcatttatgtgaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggacttgtttgacataaaagggataattcattttggcatctctggtaatgctaacagttctatgcaaattggagatgtcacaatcccagggcagcttgcacaagcagggctttgggattggctgaaaccaaatgcaactatggaaccaaatgattttgctcaatttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112239" stop="110146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111939" g_stop="111530" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="478" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="634" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110490" g_stop="110446" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="679" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E287121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111939" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
          <exon e_start="110490" e_stop="110446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGTAATGTAGACCGTCTTCCTGATGAATACGAAAAATTCCGACTCCAACCCTACTTCCATTAGAAAATTGATAAACCTTTTGTGTAATTTTTTTGTTATATATAACTCAACATTGTTAAGCCTAAAATTATGGACAAAACTTGTTGCAGTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAAT</genome_strand>
        <mrna_strand>AAAAATTGTAATGTAGACCGTCTTCCTGATGAATACGAAAAATTCCGACTCCAACCCTACTTCCATTAGAAAATTGATAAACCTTTTGTGTAATTTTTTTGTTATATATAACTCAACATTGTTAAGCCTAAAATTATGGACAAAACTTGTTGCAGTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................AAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424434" ref_strand="+" ref_description="SGN-E424434 [STM-43-H5]">
      <seq>gttcaataaaaaatggctgcaaaacaagttgtccttctaattactctcatattggctttgggatttatccctttacttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaaattaacaaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtatatttaggcctgatcctagacacccctttgttgacttatcaggtagacgatttcggattgggaaagttgagggcaaaaaagccatttatgtaaaatgtggagttggattggtgaatgcagcagcagcaacacagcagatgttggatctgtttgacataaaagggataatccattttggtatttctggcaatgctaacagttctatgcaaattggagatgtcacaatcccagggcaacttgcacaaacagggctttgggattggctgaaccaaatgcaactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112085" stop="110171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111785" g_stop="111530" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="324" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="480" r_length="156" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110490" g_stop="110471" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="499" r_length="19" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E424434" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111785" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
          <exon e_start="110490" e_stop="110471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTGGTAAATAATTCTTGTTCGGACTTTTCGAAATTGTTAATGTATTCGTGTTAAATACTCTAAAAGTACCTAGTCCGAGCAACATCTAGTAAACGAACCTTTTTTGTATTTTTATTATCTATATTGTTTGGATCCTCTAAAAGTACTGTCACACAAGTGTCTGTATCTCCAAAAACGCATTAATTTTTGAACGATCCAACACATATCTGTCAATATTTTTGAAGAGTTTGAGCAAAACATCAAACAAACCTTTTATTTTTTATATTTTTATCCGTATTGCTTGGACCCTTCAAAAATGCATAGCTTCTGAAGAATCTGAGTAACGTAGATTTCCGTCTTACTCAAATAGTTGGCTCACATAATTTTTATTTTTTTTACAGAAACCAAATGCAACTATGGA</genome_strand>
        <mrna_strand>GTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTAATTACTCTCATATTGGCTTTGGGATTTATCCCTTTACTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAATTAACAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTATATTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGGATTGGGAAAGTTGAGGGCAAAAAAGCCATTTATGTAAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAGCAGATGTTGGATCTGTTTGACATAAAAGGGATAATCCATTTTGGTATTTCTGGCAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAACTTGCACAAACAGGGCTTTGGGATTGGCTG.........................................................................................................................................................................................................................................................................................................................................................................................-AACCAAATGCAACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366106" ref_strand="+" ref_description="SGN-E366106 [cLPT-15-E24]">
      <seq>ttcaataaaaaatggctgcaaaacaagttgtccttctatttactcttatattggctttgggatttatcccttttcttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaagttaataaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctgatcctagacacccttttgttgacttatcaggtagacgatttcgaattgggaaagttgagggcaaaaaagtcatttatgtgaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggacttgtttgacataaaagggataattcattttggcatctctggtaatgctaacagttctatgcaaattggagatgtcacaatccctgtgcaacttgcacaaacagggctttgggattggctgaaaccaaatgcaacaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112084" stop="110568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111784" g_stop="111530" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="323" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110868" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="479" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E366106" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111784" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTG</genome_strand>
        <mrna_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCTTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCTGTGCAACTTGCACAAACAGGGCTTTGGGATTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301244" ref_strand="+" ref_description="SGN-E301244 [cLEW-24-O7]">
      <seq>ttcaataaaaaatggctgcaaaacaagttgtccttctatttactcttatattggctttgggatttatcccttttcttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaagttaataaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctgatcctagacacccctttgttgacttatcaggtagacgatttcgaattgggaaagttgagggcaaaaaagtcatttatgtgaaatgtggagttggattggtgaatgcagcagcagcaacacaacagatgttggacttgtttgacataaaagggataattcattttggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112084" stop="110652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111784" g_stop="111530" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="323" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110952" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="395" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E301244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111784" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATC</genome_strand>
        <mrna_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452404" ref_strand="+" ref_description="SGN-E452404 [cSTS-16-P7]">
      <seq>gttcaataaaaaatggctgcaaaacaagttgtccttctaattactctcatattggctttgggatttatccctttacttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaaattaacaaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtatatttaggcctgatcctagacacccctttgttgacttatcaggtagacgatttcggattgggaaagttgagggcaaaaaagccatttatgtaaaatgtggagttggattggtgaatgcagcagcagcaacacagcagatgttggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112085" stop="110687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111785" g_stop="111530" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111368" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="324" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111023" g_stop="110986" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="362" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E452404" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111785" e_stop="111530"/>
          <exon e_start="111435" e_stop="111368"/>
          <exon e_start="111023" e_stop="110986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTGGTGAGTTTTTTTCTTATGAAATCCTTCTCTCAAAAAAGTTAATGGATATTTTCCTTTATTTTTAAATAGTGATTTTATTCTTGTCCTCTTGTTGATGATAAGAGACAAGTAAGCGTGATGGTCAAAATTTTTTCATTCTGTTTTCAATTTAACTTTTTTGAAATGAAAAATTTCTTAACAGAGAGTGTTTGATCTGGTTCGAATCTTGAATAGTGGGTCAAAATAAGAAATAATTATAATTCAGTTGGTTGACTATTTAGATTTTCACTTTATTGGTGAGAGTTCGATTTTATGACCGTTGTTATAAAAAAAAATTTGATGAAATCATTGATTGGTGTTCTTAGGTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTT</genome_strand>
        <mrna_strand>GTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTAATTACTCTCATATTGGCTTTGGGATTTATCCCTTTACTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAATTAACAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTATATTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGGATTGGGAAAGTTGAGGGCAAAAAAGCCATTTATGTAAAATGTGGAGTTGGATTG........................................................................................................................................................................................................................................................................................................................................................GTGAATGCAGCAGCAGCAACACAGCAGATGTTGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366104" ref_strand="+" ref_description="SGN-E366104 [cLPT-15-E8]">
      <seq>ttcaataaaaaatggctgcaaaacaagttgtccttctatttactcttatattggctttgggatttatcccttttcttgtattttctgcacaagcaattccatttgaaagatttgaatctttaagagttgtcaaaaaagttaataaaaatggtccttttcttggacttatcacagtgtatgcaccagaagaagaagctttctttaaaactggtgtttttaggcctgatcctagacacccttttgttgacttatcaggtagacgatttcgaattgggaaagttgagggcaaaaaagtcatttatgtgaaatgtggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="112084" stop="111073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111784" g_stop="111530" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94">
            <donor d_prob="0.567" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111435" g_stop="111373" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="318" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E366104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111784" e_stop="111530"/>
          <exon e_start="111435" e_stop="111373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAGGTCGGGGTTTAACTGAATTCATTACTTTCAACTCGAGTATTTTTGTGCAGTGAAAATCTGAATTTACTGACTCTAGATTCTGAATTTGTTGCAGGTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTG</genome_strand>
        <mrna_strand>TTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCTTTTGTTGACTTATCAG..............................................................................................GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611977" ref_strand="+" ref_description="SGN-E611977 [61734]">
      <seq>tggcgatctcaactagacgagcatttgcagcttaccgcaacatctattggtgcattacgggctaccaatttcactgcaaatcgtttttcctctttgataggctccacttttagtccaattcgctatgaaactgttccctgttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggatgaggtagatggcgatgattatggaagtgtaaccacagctgtaaatgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaattgatgcattatcacgagaattgaccaagctgcgaactggaagagcatctgctgggatgcttgatcatatcattgttgattcaggaggtgttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcaaaatcatctgaagacgttaagcaaagtataagacgagcgcgccaaaaggctttggacacgataaagaaatctgtgcccaagaagaaagacaaagacaagtcagcttcagctttctcagaagacgatgcaaaaagactagagaaggaaattgatgacttgactaaaaagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113415" stop="118218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113715" g_stop="113915" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="364" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115307" g_stop="115422" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="480" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="572" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="594" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="663" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="117818" g_stop="117916" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="762" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="117917" i_stop="118027" i_length="111">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="118028" g_stop="118053" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="788" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E611977" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113715" e_stop="113915"/>
          <exon e_start="115069" e_stop="115221"/>
          <exon e_start="115307" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117916"/>
          <exon e_start="118028" e_stop="118053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGATCTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTA-TGGTGCATTACGGGCTACCAATTTCACTGCAAATCG-TTT--------GATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTGGTACATGATATCAACTTCTGTTGTAATACAATTTACCTTGTTTGCCTTCAATTGGACTCATTCGTACAGATTCTTGGATTCACAGGAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAAGTACGTCATATATATTAACTTGTTTGCTGAATGAAACATTCGCCATGTGCTGTATAATTTATATTCTATTCTCTACTGCCCTCTTTCATTTGGTTGTGTTTGTTCTTTCAGATTGATGACTTGACAAAAAAGTTTAT</genome_strand>
        <mrna_strand>TGGCGATCTCAACTAGACGAGCATTTGCAGCTTACCGCAACATCTATTGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTTTCCTCTTTGATAGGCTCCACTTTTAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGGTAGATGGCGATGATTATGGAAGTGTAACCACAGCTGTAAATGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCTGCTG.....................................................................................GGATGCTTGATCATATCATTGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCAAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCGCGCCAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTAGAGAAGGAA...............................................................................................................ATTGATGACTTGACTAAAAAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604443" ref_strand="+" ref_description="SGN-E604443 [74578]">
      <seq>ggcgatctcaactagacgagcatttgcagcttaccgcaacatctatggtgcattacgggctaccaatttcactgcaaatcgtttttcctctttgataggctccacttttagtccaattcgctatgaaactgttccctgttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggatgaggtagatggcgatgattatggaagtgtaaccacagntgtaaatgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113416" stop="115469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113716" g_stop="113915" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115169" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="310" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E604443" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113716" e_stop="113915"/>
          <exon e_start="115069" e_stop="115169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATCTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCG-TT--------TGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATT</genome_strand>
        <mrna_strand>GGCGATCTCAACTAGACGAGCATTTGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTTTCCTCTTTGATAGGCTCCACTTTTAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGGTAGATGGCGATGATTATGGAAGTGTAACCACAGNTGTAAATGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261518" ref_strand="+" ref_description="SGN-E261518 [cLEG-57-E2]">
      <seq>tcgaccatagaagcaagcatatatctacacgaaatgcttgtgataagacctgtataaattttgaagggggcctcaactcgacgagcattagcagcttaccgcaacatctatggtgcattacgggctaccaatttcactgcaaatcgtttgataggctccactttgagtccaattcgctatgaaactgttccctgttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggaggaggtagatggtgatgattatggaagtgtaaccacagctgtaaacgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaattgatgcattatcacgagaattgaccaagctgcgaactggaagagcatcggctggaatgcttgatcatatcatcgttgattcaggaggtgttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacgccagaaggctttggacacgataaagaaatctgtgccccagaagaaagacnaagacnagtcagcttcagctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113413" stop="118185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113722" g_stop="113915" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="265" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="418" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115307" g_stop="115422" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="534" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="626" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="648" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="717" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="117818" g_stop="117885" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="785" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E261518" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113722" e_stop="113915"/>
          <exon e_start="115069" e_stop="115221"/>
          <exon e_start="115307" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTGGTACATGATATCAACTTCTGTTGTAATACAATTTACCTTGTTTGCCTTCAATTGGACTCATTCGTACAGATTCTTGGATTCACAGGAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTC</genome_strand>
        <mrna_strand>CTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTG.....................................................................................GAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCTGTGCCCCAGAAGAAAGACNAAGACNAGTCAGCTTCAGCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260622" ref_strand="+" ref_description="SGN-E260622 [cLEG-54-E5]">
      <seq>tcgaccatagaagcaagcatatatctacacgaaatgcttgtgataagacctgtataaattttgaagggggcctcaactcgacgagcattagcagcttaccgcaacatctatggtgcattacgggctaccaatttcactgcaaatcgtttgataggctccactttgagtccaattcgctatgaaactgttccctgttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggaggaggtagatggtgatgattatggaagtgtaaccacagctgtaaacgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaattgatgcattatcacgagaattgaccaagctgcgaactggaagagcatcggctggaatgcttgatcatatcatcgttgattcaggaggtgttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacgccagaaagctttggacacgataaagaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113413" stop="118141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113722" g_stop="113915" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="265" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="418" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115307" g_stop="115422" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="534" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="626" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="648" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="717" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="117818" g_stop="117841" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="741" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E260622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113722" e_stop="113915"/>
          <exon e_start="115069" e_stop="115221"/>
          <exon e_start="115307" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTGGTACATGATATCAACTTCTGTTGTAATACAATTTACCTTGTTTGCCTTCAATTGGACTCATTCGTACAGATTCTTGGATTCACAGGAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCT</genome_strand>
        <mrna_strand>CTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTG.....................................................................................GAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448591" ref_strand="+" ref_description="SGN-E448591 [cSTS-3-L19]">
      <seq>ctcaactagacgagcattagcagcttaccgcaacatctatggtgcattacgggctaccaatttcactgcaaatcgtttttcctctttgataggctccacttttagtccaattcgctatgaaactgttccctgttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggatgaggtagatggcgatgattatggaagtgtaaccacagctgtaaacgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaattgatgcattatcacgagaattgaccaagctgcgaactggaagagcatcggctgggatgcttgatcatatcattgttgattcaggaggtgttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatctgacaaccagatattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113422" stop="116529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113722" g_stop="113915" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="356" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115307" g_stop="115422" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="472" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="564" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="586" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116187" g_stop="116229" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="629" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E448591" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113722" e_stop="113915"/>
          <exon e_start="115069" e_stop="115221"/>
          <exon e_start="115307" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCG---------TTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTGGTACATGATATCAACTTCTGTTGTAATACAATTTACCTTGTTTGCCTTCAATTGGACTCATTCGTACAGATTCTTGGATTCACAGGAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGC</genome_strand>
        <mrna_strand>CTCAACTAGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTTTCCTCTTTGATAGGCTCCACTTTTAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGGTAGATGGCGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTG.....................................................................................GGATGCTTGATCATATCATTGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCTGACAACCAGATATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253263" ref_strand="+" ref_description="SGN-E253263 [cLEG-26-A2]">
      <seq>ttcgctggagcagaccaccaattttctgcttgaaagtcggaggagttttgctaaaggaaggaaacaaattagggaggaggtagatggtgatgattatggaagtgtaaccacagctgtaaacgtaggtcctaacattaaagctactgcagtctcacagatggaggcagcaattgatgcattatcacgagaattgaccaagctgcgaactggaagagcatcggctggaatgcttgatcatatcatcgttgattcaagaggtgttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaagagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="113545" stop="116548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113845" g_stop="113915" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115069" g_stop="115221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="224" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115307" g_stop="115422" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="340" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="432" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="454" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116187" g_stop="116248" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="516" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E253263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113845" e_stop="113915"/>
          <exon e_start="115069" e_stop="115221"/>
          <exon e_start="115307" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTAGTACTGATTCTATATGCCTTTCTTATTAATCATCCAATTTATGTGGATATATTAACGCATGTTCTTTTTGATTTGTTGATAATGTGTTTACATTTCTAGCATTTAATAAAGTAGGTTGAGAATCGTGAGGTTTCTGATTCAAATTTAATTTTAACAGAGACATAAACACTAGGTGATTTTTTCCTGTCCGTCTCGGCCTTGATGGCCGTGTTATACGGTACTTGTTGTTGGTGGGAGGTGGCAAGTATCCATGGAATGGAATTAGTATGAGGTATGCGTAAGCTGGCCCAAATGCCACAATATTAAAAAATGAGTTTACATTTCTAACTCACCAAGCTAATAGCTTAGTAAAGAAGAAGCAAGGTTTCATGATTTTGTATATGAAAAAAGAGTTCAAGTAATTGTATATATACACAATAAGATCATTTTATAAGTACTTATAGGAAACTGAAAATAACTATATGATAAGCATTAATCAATAATCTGTTAAAAAGGGGTAATTTAACAAGCAAGGGGTTTCCCTTCCGGCCGAGCTCGCCCTGTGCAGGTTACTTCTACTGTGTGGTTTACTATTGCATAGAAGTGGAGGTTTTACCTTGTGTGCACCCAAAGGGTAGTGACTGCGGTTCTCCTTGTCATAAAAAAAGAAGGGATAATTGACCTACTATCACATGTTAAACTTCTCTCCGTGTATATAACTTAAATCCTTTGAAAAATGAGTTTGGCTTGTATACATTACACAAATGGTGCTATCAGGCCAATTAAAGAATTTCATGAATAGTGTGATTTGTAATCTTGAATTGCCAGAATAGGAAAGATTACCTGACAGTGTAAAAATTATTTTCAAACCATCAGTGGAATTAGATAAACTCATAATATATGTTAGAATACATTACAATTACTCAAATGGTTGGGCACACTTTTAATTTCCATTAATATCATGTGTGAGTTTTCTCTTGTTTAGGTTTGCTGCTATTCATTTGGGATATTGTTATAATTTGTAATGATGGAACCTTTCTATTTTTGGTATAAGTTTGGAGGAAATATAATATCGATTGACGATTGAACGTTCTTTGTAAAAATCATCTCTTTTGAGAGGCAACATGCTTGAAGTTTCTGACCTCTTGCTATCTGTTGTTTGATGAATTTGTAGGGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTGGTACATGATATCAACTTCTGTTGTAATACAATTTACCTTGTTTGCCTTCAATTGGACTCATTCGTACAGATTCTTGGATTCACAGGAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACG</genome_strand>
        <mrna_strand>TTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTG.....................................................................................GAATGCTTGATCATATCATCGTTGATTCAAGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAAGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347857" ref_strand="+" ref_description="SGN-E347857 [cTOF-31-A17]">
      <seq>ttaagacacctctttgcaggatggctgtcatttcagtgctagacccaaaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacgccagaaggctttggacacgataaagaaatctgtgcccaagaagaaagacaaagacaagtcagcttcagctttctcagaagacgatgcaaaaagactggagaaggaaattgatgacttgacaaaaaagtttattaagtcagcagaagatatgtgcaagtcaaaggacagagaaataactagcagttgaagaaactagttttagtttcatcggaggctcacgcaaaggttcaattttttggctgaagctatagagggaattatttactctccagaattcttgtactcgaagtcggaaaaagataacaagacatgttacaacttacaagtgatcatgctaatacttgaaaagaaagatattgtatttcatataacctatgctgnntggtttttagcttttcatgttcaggatcatatatcatttcattttgtgaaagggctgagatcatgtaacttttttttatatataaatcaaacaactatttgttctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="115043" stop="118710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115343" g_stop="115422" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="172" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="194" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="263" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117916" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="362" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117917" i_stop="118027" i_length="111">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118028" g_stop="118410" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="745" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="755"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E347857" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115343" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117916"/>
          <exon e_start="118028" e_stop="118410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAAGTACGTCATATATATTAACTTGTTTGCTGAATGAAACATTCGCCATGTGCTGTATAATTTATATTCTATTCTCTACTGCCCTCTTTCATTTGGTTGTGTTTGTTCTTTCAGATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTCTCCAGAATTCTTGTACTCGAAGTCGGAAAAAGATAACAAGACATGTTACAACTTACAAGTGATCATGCTAATACTTGAAAAGAAAGATATTGTATTTCATATAACCTATGCTG-TTGGTTTTTAGCTTTTCATGTTCAGGATCATATATCATTTCATTTTGTGACAAGGGCTGAGATCATGTAACTTTTTTTTATATATAAATCAAACAACTATTTGTTCTCT</genome_strand>
        <mrna_strand>TTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAA...............................................................................................................ATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTCTCCAGAATTCTTGTACTCGAAGTCGGAAAAAGATAACAAGACATGTTACAACTTACAAGTGATCATGCTAATACTTGAAAAGAAAGATATTGTATTTCATATAACCTATGCTGNNTGGTTTTTAGCTTTTCATGTTCAGGATCATATATCATTTCATTTTGTGA-AAGGGCTGAGATCATGTAACTTTTTTTTATATATAAATCAAACAACTATTTGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269764" ref_strand="+" ref_description="SGN-E269764 [cLEM-17-J4]">
      <seq>aaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacgccagaaggctttggacacgataaagaaatctgtgcccaagaagaaagacaaagacaagtcagcttcagctttctcagaagacgatgcaaaaagactggagaaggaaattgatgacttgacaaaaaagtttattaagtcagcagaagatatgtgcaagtcaaaggacagagaaataactagcagttgaagaaactagttttagtttcatcggaggctcacgcaaaggttcaattttttggctgaagctatagagggaattatttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="115090" stop="118489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115390" g_stop="115422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="125" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="147" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="216" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117916" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="315" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117917" i_stop="118027" i_length="111">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118028" g_stop="118189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="477" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E269764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115390" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117916"/>
          <exon e_start="118028" e_stop="118189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAAGTACGTCATATATATTAACTTGTTTGCTGAATGAAACATTCGCCATGTGCTGTATAATTTATATTCTATTCTCTACTGCCCTCTTTCATTTGGTTGTGTTTGTTCTTTCAGATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTCT</genome_strand>
        <mrna_strand>AAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAA...............................................................................................................ATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269758" ref_strand="+" ref_description="SGN-E269758 [cLEM-17-H4]">
      <seq>aaaaccttgtcagtgaatccttatgatccagattccctcaaagagttggagaaagccattatttcatctccattggggttaaatcctcaatccgacaaccagagattaattgtaccaatacctccgttgactaaggagcatgtgcaggctgtgtgcaaagtggttgcgaaatcatctgaagacgttaagcaaagtataagacgagcacgccagaaggctttggacacgataaagaaatctgtgcccaagaagaaagacaaagacaagtcagcttcagctttctcagaagacgatgcaaaaagactggagaaggaaattgatgacttgacaaaaaagtttattaagtcagcagaagatatgtgcaagtcaaaggacagagaaataactagcagttgaagaaactagttttagtttcatcggaggctcacgcaaaggttcaattttttggctgaagctatagagggaattatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="115090" stop="118488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115390" g_stop="115422" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115605" g_stop="115696" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="125" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116097" g_stop="116118" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="147" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116187" g_stop="116255" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="216" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117818" g_stop="117916" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="315" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117917" i_stop="118027" i_length="111">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118028" g_stop="118188" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="476" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E269758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115390" e_stop="115422"/>
          <exon e_start="115605" e_stop="115696"/>
          <exon e_start="116097" e_stop="116118"/>
          <exon e_start="116187" e_stop="116255"/>
          <exon e_start="117818" e_stop="117916"/>
          <exon e_start="118028" e_stop="118188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTGTCAGTGAATCCTTATGATCCAGATGTAATTTATACACTTAAACTCATATGCATATACTGTCTGATTTTCGATATTTTTTCCATTTGTATTCATTTTACTTGATTAATGGAACATTTCTTTATATTTATTCTGAGTGCAAAAAAATTGAAACTGAAGTGTACTTTTGATGAATATGCACCATGATCGACTGTGATTGTCTTTTGCAGTCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCCGTAAGTATCCATTCGAAAGAGTAAAATAGTCTCTTCTTTGTTTTTGGATCCATGATCCATCTATTAGTCAGGTGACTGTCAAAAATAGAAGCAAAAACTTAATTTTGGTCTCGACTTGATAGTATACTATAACTTTCATGTTGCCATTATTTACATGAAGAATGGCTTGAAGTACATTGTGTTGATGTAGAAAAAACATTATTATAACACTTCTTCAAAATAATCATTCTCCCCAGGGATATAACTACTTCAGGCGATTAACTGTTATGCTACTTTGCTATTTGCATAAGCAACATTTTTGAGATATGCAATGTGCAGAAAGTACTTTATGTCCTTTAAGATTTTCAGTGCTTTTTGACTCACTCTTTTTTCTTTTCCTGGCAATCCGTGCAACAAGCAGGTTGACTAAGGAGCATGTGCAGGTGATCCTGGTCAATTTCAGTTTATTTTTAAATGTTTCTGGTGCTGATAATGTCATCCTATTTACTAGGCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAGGTACACCATTGACCAACACCTTTTTTTACATCTCCTTTTCCCCTTTTTACATCCATAAGCAAGGTTAAAAGCAAAATAAAGGAGCCCTAACAGATGAGATAGTGTAGTAGTTGCACATATATTTTATAAAACTTGCTCGTTGTGACTGACCAGAAAGATGGTTCTAGCCAGCTCAAGCTCATTAAAGGCTGGGAGAGAGTCAGACCCTAGCTATTCATGATTTGAGCTGTATTCTGTGCAGCCCTAAATGTGAGTCGTTTTTTCAAATGCTGCTCTACAGTATACTCTAGACAATTGCATATGGTTACTACTGAAGTCCTGGATGACAACTACTAAACTCTCTTAAGAATTCAGTTAAGTAGTACTCTTGAAATTGAGGGACATGTTGTGCACTTTCTACTTTACGTCTTCTTAACTTCCAAGAGCATAAAAGGTCCAAATCTGTATGGTGATTCATGTAGCTTACCTCATCTTAACTTGTTTTTGATAGAGGTGTAACAATACTAATAGCTGTTGTCGTCGTCTTTGTAGAGCAACTAAATTGATAAGTAATTAAGGAGCCAAAAATCAAATTTCTCTTACTAATTCTAAAAAAAGGGAATCATTATTGATTAGTGATAAGGAGCCAACGAGCTGAAGAAAAGCTTAGGCATGATGGTTGTGTGTCTGCAATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGAGGTCGAACGTTTATATACCATTTTCTCCATGCAAGACAGCAGCATGACCAGTAGTATTGCTCCTAGATTCATTGGTGAACTCAATCCCCACCTCCAAAATAAACGGAAGTAAAGAATGGGGTAAATAATGTTGAGCTGATAAAAACAGTCATATGCATGTAGATTTTGCTTGGATATAACCGAAGAATTTATGTGAAGTACATATGTCTCCATGTCGATACTACTTTCCTTTTTATCAGGCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAAGTACGTCATATATATTAACTTGTTTGCTGAATGAAACATTCGCCATGTGCTGTATAATTTATATTCTATTCTCTACTGCCCTCTTTCATTTGGTTGTGTTTGTTCTTTCAGATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTC</genome_strand>
        <mrna_strand>AAAACCTTGTCAGTGAATCCTTATGATCCAGAT......................................................................................................................................................................................TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTAAGGAGCATGTGCAG....................................................................GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAA...............................................................................................................ATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320839" ref_strand="+" ref_description="SGN-E320839 [cTOB-27-F23]">
      <seq>aatatcaaaatgaagctggaggtatgttggacttggttgttgctgggtaacaaagacctgactttctgtttcaggtatgttaatgtgatttgggtgcggagagcttgaaaagtaaatggctactaactgtagtgctttagaggggttattttttgtagtcctgtagttgaattctggtagtttctggttgcaacaatgtctagggaaaggtgctttagagaatattcttgtaaaaaataaggtttagtggccaaactacaggaacaaaagagaaggaatattggcattgtgggaggttttaacattctagttcctttttagttagagaagttaaggaggataacaaaaatattatagaagagaaaacgtgagaaattccaacttttggagatgctaaatgaattatcacttagttcattaaccttcaacctagtttggccaccaacaagagggtactgtagttttcagtatgctgtcctctattaacaaattaatggagctcttccagtagtttctttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="116626" stop="117745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116926" g_stop="117445" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E320839" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116926" e_stop="117445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAG-AGAGAAAACGTGAGAAATTCCAAC-TTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTC-TTGTTTG</genome_strand>
        <mrna_strand>AATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAAGAGAAAACGTGAGAAATTCCAACTTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGGTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320106" ref_strand="+" ref_description="SGN-E320106 [cTOB-21-D13]">
      <seq>ttatcaaaatgaagctggaggtatgttggacttggttgttgctgggtaacaaagacctgactttctgtttcaggtatgttaatgtgatttgggtgcggagagcttgaaaagtaaatggctactaactgtagtgctttagaggggttattttttgtagtcctgtagttgaattctggtagtttctggttgcaacaatgtctagggaaaggtgctttagagaatattcttgtaaaaaataaggtttagtggccaaactacaggaacaaaagagaaggaatattggcattgtgggaggttttaacattctagttcctttttagttagagaagttaaggaggataacaaaaatattatagagagaaaacgtgagaaattccaactttggagatgctaaatgaattatcacttagttcattaaccttcaacctagtttggccaccaacaagaggttactgtagttttcagtatgctgtcctctattaacaaattaatggagctcttccagtagtttcttgtttggaattganggaaacatctttgttcaaaagttgtgtgtgttatgcttatatgatgtccacgatactctcctcgcatgacttggactgtactgaagatgtggtgaattaccttttttgtcacctatcatttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="116628" stop="117878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116927" g_stop="117578" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E320106" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116927" e_stop="117578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGA</genome_strand>
        <mrna_strand>TTATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGANGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620671" ref_strand="+" ref_description="SGN-E620671 [71375]">
      <seq>tcaattaactagctctgataatgcacaaaccataacttgcttcagtttgtagtacaaggttcaatcttttcgacatgaacattgccgtcatagtcaattctgtaggaggtgtcaaggccttccaaaataaggtgataaacaatatcatcagaaaaatgaacttcctctttactgtcatcatcttcaagcgttgcattattcatactgctattttcagtcttatgaggtcgaatcctctgagatactgatcgtatatcccatgacagcacttgttgaattaagttttgaaattcagtaggagatgtataaagtgatatctcggttttcttcttctttggtatttttcttgaccaacaatggttcagagaggcagagaagtcctgagagaagttaacagatgttatagctaacatattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="+" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="118349" stop="119368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118649" g_stop="119068" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="+" ref_id="SGN-E620671" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118649" e_stop="119068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAACTAGCTCTGATAATGCACAAACCACAACTTGCTTCAGTTTGGAGTACAAGGTTCAATCTTTTCGACATGAACATTGCCATCATAGTCAATTTTGTAGGAGGTGTCAAGGCCTTCCAAAATAAGGTGGTAAACAATATCATCAGAAAAATGAACTTCCTCTTGACTGTCGTCATCTTCAAGCGTTGCATTATTCATGCTGCTATTTTCAGTCTTATGAGGTCGAATCCTCTGAGATACTGATCGTATATCCCATGACAGCACTTGATGAATCAATTTTTGAAACTCAGTAGGAGATGTATAAAGTAATATCTCGGTTTTCTTCTTCTTTTGTAATTTTCTTGACCAACAATGGCTCAGAGAGGCAGAGAAGTCGTGAGAGAAGTTAACAGATGTTATAGCTAACATATTGTCC</genome_strand>
        <mrna_strand>TCAATTAACTAGCTCTGATAATGCACAAACCATAACTTGCTTCAGTTTGTAGTACAAGGTTCAATCTTTTCGACATGAACATTGCCGTCATAGTCAATTCTGTAGGAGGTGTCAAGGCCTTCCAAAATAAGGTGATAAACAATATCATCAGAAAAATGAACTTCCTCTTTACTGTCATCATCTTCAAGCGTTGCATTATTCATACTGCTATTTTCAGTCTTATGAGGTCGAATCCTCTGAGATACTGATCGTATATCCCATGACAGCACTTGTTGAATTAAGTTTTGAAATTCAGTAGGAGATGTATAAAGTGATATCTCGGTTTTCTTCTTCTTTGGTATTTTTCTTGACCAACAATGGTTCAGAGAGGCAGAGAAGTCCTGAGAGAAGTTAACAGATGTTATAGCTAACATATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392743" ref_strand="+" ref_description="SGN-E392743 [TUS-37-P19](-)">
      <seq>tttgaaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaaggcaatttttagatcctggtgaatccgtgctcatgatctcgatggggaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgtaaagacacaaaagttttattgaaagaacttgatgagctgattttatcagataatttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122401" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122101" g_stop="122042" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="284" r_length="224" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121173" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="640" r_length="356" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E392743" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122101" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAA-GCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTATCTATTATT</genome_strand>
        <mrna_strand>TTTGAAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGGGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGATAATTTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393938" ref_strand="+" ref_description="SGN-E393938 [TUS-14-O20](-)">
      <seq>tttgattcaaaatggaagcaatttttagatcctggtgaatccgtgttcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgtaaagacacaaaagttttattgaaagaacttgatgagctgattttatcagctattttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122171" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122055" g_stop="122042" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="237" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121173" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="593" r_length="356" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E393938" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122055" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTATCTATTATT</genome_strand>
        <mrna_strand>TTTGATTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGTTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389938" ref_strand="+" ref_description="SGN-E389938 [TUS-4-O11]">
      <seq>caagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagactttgtaagacacaaaagttttattgaaagaacttgatgagctgattttatcagctattttgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122481" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122181" g_stop="122042" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="363" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121180" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="712" r_length="349" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E389938" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122181" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTATC</genome_strand>
        <mrna_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTTGTAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428156" ref_strand="-" ref_description="SGN-E428156 [STM-49-F18]">
      <seq>catggagccaaaagtcccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcaatttctgaagctggtagcagtatcaccaggctcgcatcaatcgactcctttgactcaaaatggaagcaatttttggatcctggtgaatccgtcctcatgatctcgatggtgaaaaagttacagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttatgtagatccctcaaagttggtaatcaaaggaaacattatatggtccgacaatcctaatgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcatttgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcggacggggttccagaaacagttggatgctcctaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcactacacttgttatccttggatgaagctcactactgtttacacaatcacatttgtatgtttacagacctgtaaagccacaaaagttttaattgaaagaacttgatgagctgattttatcagatattttgctccctaaaaaaaaaaaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122513" stop="120878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122317" g_stop="122305" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.454" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122211" g_stop="122042" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="183" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="406" r_length="223" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121528" g_stop="121183" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="758" r_length="352" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="763" polyA_stop="775"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E428156" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428156" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122317" e_stop="122305"/>
          <exon e_start="122211" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAA-TTT---T-CAC---TTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTT-ATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCT</genome_strand>
        <mrna_strand>CATGGAGCCAAAA.............................................................................................GTCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAATTTCTGAAGCTGGTAGCAGTATCACCAGGCTCGCATCAATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTGGATCCTGGTGAATCCGTCCTCATGATCTCGATGGTGAAAAAGTTACAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTATGTAGATCCCTCAAAGTTGGTAATCAAAGGAAACATTATATGGTCCGACAATCCTAATGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTTGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGGACGGGGTTCCAGAAACAGTTGGATGCTCCT--AAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTACACTTGTTATCCTTGGATGAAGCTCACTACTGTTTACAC-AATCACATTTGTATGTTTACAGACCTGTAAAGCCACAAAAGTTTTAATTGAAAGAACTTGATGAGCTGATTTTATCAGATATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550043" ref_strand="+" ref_description="SGN-E550043 [TUS-5-O11]">
      <seq>cagtgctgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgtaaagacacaaaagttttattgaaagaacttgatgagctgattttatcagctattttgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122494" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122194" g_stop="122042" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="376" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121183" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="722" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="734"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E550043" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122194" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCT</genome_strand>
        <mrna_strand>CAGTGCTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418111" ref_strand="-" ref_description="SGN-E418111 [STM-26-L22]">
      <seq>aaaaagttacagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttatgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcatttgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaagaacttcttatcaacaccactcaattttacagctttactctctctagtagaaattttcaccacacttgttatccttggatgaagctcactactgtttacacaatcacatttgtatgtttacagacttgtaaagacagttttaattgaaagaacttgatggctgattttatcagctagttagctccctaaaaaaaaaaccttttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122110" stop="120878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121810" g_stop="121637" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121528" g_stop="121183" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="519" r_length="345" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="534"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E418111" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418111" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121810" e_stop="121637"/>
          <exon e_start="121528" e_stop="121183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTT-----CAC---TTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCT</genome_strand>
        <mrna_strand>AAAAAGTTACAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTATGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTTGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCT--AAAGAACTTCTTATC-AACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACCACACTTGTTATCCTTGGATGAAGCTCACTACTGTTTACAC-AATCACATTTGTATGTTTACAGACTTGTAAAG--AC--AGTTTTAATTGAAAGAACTTGATG-GCTGATTTTATCAGCTAGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537984" ref_strand="+" ref_description="SGN-E537984 [TUS-56-N23](-)">
      <seq>tgaaaaatcatcctttcttagtgggatcgattgggagaattgaggttgcagacccctccaaggcttggcatggagcaaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgtaaagacacaaaagttttattgaaagaacttgatgagctgattttatcagctattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122687" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122387" g_stop="122305" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.454" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122211" g_stop="122042" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="251" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="474" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121528" g_stop="121186" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="817" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="832"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E537984" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122387" e_stop="122305"/>
          <exon e_start="122211" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTT</genome_strand>
        <mrna_strand>TGAAAAATCATCCTTTC-TTAGTGGGATCGATTGGGAGAA-TTGAGGTTGCAGACCCCTCCAAGGCTTGGCATGGAGCAAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425221" ref_strand="-" ref_description="SGN-E425221 [STM-44-D2]">
      <seq>aaaaagttacagaaactcacaagcaagaaagttcagctaatcctaacaaataacccaaagttgatttatgtagatccctcaaagttggtaatcaaaggaaacattatatggtccgacaatcctaatgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcatttgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaagaacttcttatcaacaccactcaattttacagctttactctctcttgtagaaattttcactacacttgttatccttggatgaagctcactactgtttacacatcacatttgtatgtttacagacctgtaaagccacaaaagttttaattgaaagaacttgatgagctgattttatcaaaaaaaagggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122110" stop="120894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121810" g_stop="121637" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121528" g_stop="121194" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="513" r_length="339" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E425221" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425221" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121810" e_stop="121637"/>
          <exon e_start="121528" e_stop="121194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAA-TTT---T-CAC---TTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTT-ATTGAAAGAACTTGATGAGCTGATTTTATCA</genome_strand>
        <mrna_strand>AAAAAGTTACAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAACCCAAAGTTGATTTATGTAGATCCCTCAAAGTTGGTAATCAAAGGAAACATTATATGGTCCGACAATCCTAATGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTTGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCT--AAAGAACTTCTTATC-AACACCACTCAATTTTACAGCTTTACTCTCTCTTGTAGAAATTTTCACTACACTTGTTATCCTTGGATGAAGCTCACTACTGTTTACAC--ATCACATTTGTATGTTTACAGACCTGTAAAGCCACAAAAGTTTTAATTGAAAGAACTTGATGAGCTGATTTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550378" ref_strand="+" ref_description="SGN-E550378 [TUS-5-N11](-)">
      <seq>caagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcctcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatattagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaatccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctttagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacattggtattttacagactttaaagacacaagagtttatgaaagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122481" stop="120913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122181" g_stop="122042" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="363" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121212" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="676" r_length="313" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E550378" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122181" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTT</genome_strand>
        <mrna_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCCTCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATATTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAATCCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTTTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTGGTAT-TTTACAGACTT-TAAAGACACAAGAG-TTTA-TGAAAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389679" ref_strand="+" ref_description="SGN-E389679 [TUS-4-O11](-)">
      <seq>caagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgaaagacacaaaagattatgaaagaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122481" stop="120910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122181" g_stop="122042" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="363" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121214" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="675" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E389679" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122181" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAAC</genome_strand>
        <mrna_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTG-AAAGACACAAAAG-ATTA-TGAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550383" ref_strand="+" ref_description="SGN-E550383 [TUS-5-O11](-)">
      <seq>caagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtgattctggtctttttgttgttttgactacacattctttgcagatcgaacggggttccagaaacagttggatgctcctaaaaagaacttcttatcaaacaccactcaattttacagctttactctctctagtagaaattttcacttatccttggatgaagctcactcctgtttacacaaatcacatttgtatgtttacagacttgtaaagacacaagagtttatgaaagaactgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122481" stop="120905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122181" g_stop="122042" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="363" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121214" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="676" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E550383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122181" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAAC</genome_strand>
        <mrna_strand>CAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAGAG-TTTA-TGAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746675" ref_strand="+" ref_description="SGN-E746675 [GI|57168304]">
      <seq>atgttggcattggtagggggagaaggtgatatggagcaagaatttgatgcaaagctaaagattcagaacaattcagctaatactcagagatctaagagctttgcatttagggcaccacaagagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcgaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtacttgatcagttagatcatcccggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcacttgagtcttgtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcacgcttttatgcagctgaagttgtagacgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatgttgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggatcgattgggagaatttgaggttgcagacccctccaaggcttgccatggagccaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctctccagaaccggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126786" stop="121145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126486" g_stop="126304" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="364" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125096" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="417" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="519" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="628" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="707" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="873" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1008" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.454" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="122211" g_stop="122042" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1178" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1401" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="121528" g_stop="121445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1402" r_stop="1485" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E746675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1486</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126486" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGA</genome_strand>
        <mrna_strand>ATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228373" ref_strand="+" ref_description="SGN-E228373 [cLED-3-H19]">
      <seq>aagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtgaaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaaccaaagttgatttacgtagatccctcaaagttggtgatcaaagggaacattatatggtccgacaatcctaacgatcttagcattcaagtcacaagcccttcacagttcaagatttgtacaccaaagaaagttatgtcattcgaggatgccaaaaaccgagcacaacagtggaaaaaggcgattgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="122480" stop="121159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122180" g_stop="122042" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121859" g_stop="121637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="362" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121528" g_stop="121459" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="432" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E228373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122180" e_stop="122042"/>
          <exon e_start="121859" e_stop="121637"/>
          <exon e_start="121528" e_stop="121459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACAGTTAAGTTCCTTTGCTTTCCCTGCATATAACATTGTTAGTCAAGTTTTTGTTACTTTAGTTTAACTCGTTTCCGCTATCTGTGTGCATTCATCTTGTGATCATTACAGCCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTC</genome_strand>
        <mrna_strand>AAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA............................................................................................................CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702780" ref_strand="+" ref_description="SGN-E702780 [FA19CG01]">
      <seq>gtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcacgcttttatgcagctgaagttgtagacgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatgttgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggatcgattgggagaatttgaggttgcagacccctccaaggcttgccatggagccaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactcaaaatggaagcaatttttagatcctggtgaatccgtgctcatgatctcgatggtngaaaagttgcagaaactcacaagcaagaaagttcagctaatcctaacaaataaccaaagttgatttacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="125430" stop="121440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125130" g_stop="125096" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="137" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="246" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="325" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="491" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="626" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.454" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122211" g_stop="122042" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="796" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121859" g_stop="121740" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="915" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E702780" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125130" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122042"/>
          <exon e_start="121859" e_stop="121740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATGGTAGGCTCATGAACTTCTGCTGACCTCAATAATGAAAAACACTCCAGTATATCCGGATGCTGTCATATTTGTTAACCTTTTCAATAGAGTTCCATAATTCCATCTGGACCAAATGCTCTTTTTCTATCTTCCCTTTTGATAACTACTATATGTTGACTTTTTTCTTGTGATGGCATCAATAGGAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGT</genome_strand>
        <mrna_strand>GTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG......................................................................................................................................................................................GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTNGAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAAT-AACCAAAGTTGATTTACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697411" ref_strand="+" ref_description="SGN-E697411 [FA02DB09]">
      <seq>ggaacagccgcttatgtacctcctgaagctttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatgttgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggatcgattgggagaatttgaggttgcagacccctccaaggcttgccatggagccaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttagacctaacgatggaaacggtgctgctgcatcagtttctgaagctggtaacagtatcaccaggctcgcatctatcgactcctttgactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="124525" stop="121747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124225" g_stop="124170" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="222" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="357" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.454" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122211" g_stop="122047" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="522" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E697411" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124225" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCA</genome_strand>
        <mrna_strand>GGAACAGCCGCTTATGTACCTCCTGAAGCTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458875" ref_strand="+" ref_description="SGN-E458875 [cPRO-32-N3]">
      <seq>ggcgcttgaatcttgtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcgtgcttttatgcagctgaagttgtagatgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtccctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatattgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggattgattgggagaatttgaggtcgcagacccctccaaggcttgccatggagccaaaagtcccgtcaactcatagcagtggtgatgagcaagatccttcatggaaatcatcacacattgggagatggttcagttagacctaacgatgggaacggtgctgctgcatncatttctgaagctggtagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="125444" stop="121784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125144" g_stop="125096" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.785" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="151" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="0.98"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="260" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="339" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="505" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="640" r_length="135" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.454" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122211" g_stop="122084" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="769" r_length="129" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E458875" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125144" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATT-GGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAG</genome_strand>
        <mrna_strand>GGCGCTTGAATCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCGTGCTTTTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTCCCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATTGATTGGGAGAATTTGAGGTCGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GTCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAAATCATCACACATTGGGAGATGGTTCAGTTAGACCTAACGATGGGAACGGTGCTGCTGCATNCATTTCTGAAGCTGGTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392744" ref_strand="+" ref_description="SGN-E392744 [TUS-37-P19]">
      <seq>atgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatgttgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggatcgattgggagaatttgaggttgcagacccctccaaggcttgccatggagccaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcctggaatccatcacccattggagatggttcagttagacctaacgatggaaaacgggctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="124868" stop="121807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124568" g_stop="124542" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="0.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="136" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="215" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="381" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.454" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122211" g_stop="122107" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="621" r_length="105" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E392744" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124568" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCA</genome_strand>
        <mrna_strand>ATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCCTGGAATCCATCACCCATTGGAGATGGTTCAGTTAGACCTAACGATGGAAAACGGGCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394382" ref_strand="+" ref_description="SGN-E394382 [TUS-14-O20]">
      <seq>atgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctgctggatgttgatcctagcagaagacctggtgctggacctgatggttatgcttccttgaaaaatcatcctttctttagtgggatcgattgggagaatttgaggttgcagacccctccaaggcttgccatggagccaaaagccccgtcaactcatagcagtggtgatgagcaagatccttcatggaatccatcacacattggagatggttcagttaaacctaacgatggaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="124868" stop="121818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124568" g_stop="124542" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="0.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="136" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="215" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123975" g_stop="123810" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="381" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122440" g_stop="122305" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.454" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122211" g_stop="122118" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="610" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E394382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124568" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123810"/>
          <exon e_start="122440" e_stop="122305"/>
          <exon e_start="122211" e_stop="122118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTGGTACGCTATCATTTCGTATTTAATATTCACTTCCATCCTGTGGTTCCTCTTTCTGTTTCCCCTATTATGCTAGCTTTTTTTCTTTTTATGTTTTATACTTTACACTTCTCCATTTGACTGAACTTTCATCTCTAGACAGTGTGGTCTCTACTTTAAACAACACGCCTCCTTGAAGTGAGGTTTGACCAGCTTTGTTTTTGGAATTATAATATTCCTGATCTAAAGTTGTAGCTAATTTTTTCTCAGTCGTGGACCATATCTTTGTCTATTGACCTTTATCTTTTGTGAATGAAACAGGGAATGTCCCTACAATTTTATACGTATTTTATAATCTGCAATCGATACCTATCCTATTATGAATAAAGTAAAAAAAGTGCATGTGAAAAATGTAACTTTCGCTTCTGAAGTAGTATCTTGTTTTGTCTACACTGTACAACATGACCGTCATGCAGTCTAGAGAGTTATATACTATGTAATATCATTACAAAAAATTCTGGGTGTTGAAATACCACCACAATGCTTACATGACAAAGACCTTTCATATTTTTCAACTTCTTACATAGAGAGAATGAATTTTTCTACAGTAGTCTAGCACTATCTTCGAGACTTCGACAACTTAGTTCTTTCTAATAGGATGTAGTATATAGTTTTAAAACATTCAAATTTCAAAATATAAAGCCAGAAGCTTTGTCCTCCATGTGCTGGCTTGCAAGTGCAGTTTTGCTGGTTATAATTTTTCGTTACTTGCAGCTATTAATTATTATCCAGTACTGGAAAAGGACGTTGCTGGTATATTGTGGGACTTTTGTGCTAATGTGAGCAACGTGCTACGTTGTCTTTCACTAGTTCCTATGAAGTTTCAGGTTATAGAACTTTAGGTTGGTGAACGCAAGGGTGTGACCTTGTGATCAATGAAATAGGTTGAGAACCATGAAGTCTTGGATTCAATTCTCAGTTGAGCAAAGACACTACGTGTTTTGTTTCATCTGTCTAAGCTATGGTGGATAGAGTTACCAGGTAACTGTCTTGGCCGGAAGTAGAGGGTGGAATTAGTCTAGGTGCACGCTAGCTGGCCCAAACACTACATTTACTACAACAAACAACAACATACTCAGTGTAATCCTACAATTAGAGTCTGGGGAGGGTGGTGTTACGCAGACCTTAACCCTACTTTGTGAAGGTAAGGTAGATAGGTTGTTTCCGAATAGATGCTTGACTCAAGTAAAGCCATATAAAAGCACGTTTGAGAAGGACATACAGTAATCAATAATCCATGAAAATAATGGAGTATGTATGTTAGTATGTTAGATATATCTTCCTATTAGTGTTATCTGTTCTGCTGATTGACTTGAGCGCAAAAAAAACTCAGGATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAAGTATGTCATTCATTTTGCTTTATGTTTTAGATCTTACTTGCCCCAACAGATAGTTCTTTTCCCGTTAAACAGTTCTAGTTATGAATCATTCAGGCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACG</genome_strand>
        <mrna_strand>ATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGC-TTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA.............................................................................................GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAAACCTAACGATGGAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547982" ref_strand="+" ref_description="SGN-E547982 [TUS-56-N23]">
      <seq>ttcagaacaattcagctaatactcagagatctaagagctttgcatttagggcaccacaagagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcgaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtacttgatcagttagatcatcccggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcacttgagtcttgtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcacgcttttatgcagctgaagttgtagacgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttcccagagatcattgccagagatattagattcccaaattatttttcaaatgaagccagagatattattgatcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126725" stop="123513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126425" g_stop="126304" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="303" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125096" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="356" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="458" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="567" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="646" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123975" g_stop="123813" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="809" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E547982" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126425" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTT-CCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTG</genome_strand>
        <mrna_strand>TTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCCAGAG-ATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201997" ref_strand="+" ref_description="SGN-E201997 [cLEC-7-M22]">
      <seq>tgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtacctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccgtttaaagatgccagtgaatggctcatcttccagagaatcattgccagagatattagattcccaaattatttttcaaatgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="124867" stop="123534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124567" g_stop="124542" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="0.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="135" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123975" g_stop="123834" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="356" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E201997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124567" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCC</genome_strand>
        <mrna_strand>TGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425220" ref_strand="+" ref_description="SGN-E425220 [STM-44-D2]">
      <seq>agattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaaggtgaaatggagcaagaatttgatgcaaagttaaagattcagaacaattcagctaatactcagagatctaagagctttgcttttagggcaccacaggagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcaaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtactcgatcagttagatcatcctggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcgcttgaatcttgtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcatgcttttatgcagctgaagttgtagatgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcagactttggcagtgtaaagccaatgcaggatagcagaataacagtccttccaaatgctgcatcagatgacaaagcctgtacttttgtgggaacagccgcttatgtccctcctgaagttttaaattcttctcctgcgacttttggaaatgatctttgggcacttggctgcacattgtatcaaatgctttcaggaacttctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126817" stop="123616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126517" g_stop="126304" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="395" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125096" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="448" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.785" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="550" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="0.98"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124471" g_stop="124363" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="659" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124248" g_stop="124170" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="738" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123975" g_stop="123916" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="798" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E425220" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126517" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124363"/>
          <exon e_start="124248" e_stop="124170"/>
          <exon e_start="123975" e_stop="123916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAGGTAAATGTTGCTTTCTACGATGACACTCTCCTTGAAATTGGATTCACATTAACCTGATGAGAGTATATTGTCGTCTTGATCATTATTGAATCATTGGTTGTTCTTTTTATTCAGATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGGGTATAAAACTCTATCTTTGGAAAAACCATATTTTTCTTCTTCTTTGTGTTTTATTAGGACATATGTTGTAGGTCCATGTCTGCATCATTGCTCCTTTTAAATTTTTACAGCTTGTTCATATTAGCGTCTACATTTCTTTATTATGAATCATATTTGTCTAACATCACTATTCATTTTGGATATGTCTTTACCAGAAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTT</genome_strand>
        <mrna_strand>AGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGAAATGGAGCAAGAATTTGATGCAAAGTTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCTTTTAGGGCACCACAGGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCAAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTCGATCAGTTAGATCATCCTGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCGCTTGAATCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCATGCTTTTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG..................................................................................................................ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTCCCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG..................................................................................................................................................................................................AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267909" ref_strand="+" ref_description="SGN-E267909 [cLEI-12-B22]">
      <seq>tcagaacaattcagctaatactcagagatctaagagctttgcatttagggcaccacaagagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcgaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtacttgatcagttagatcatcccggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcacttgagtcttgtgaaggtggagagctttttgatcaaataacaaggaaaggccgtttgtctgaagatgaggcacgcttttatgcagctgaagttgtagacgctcttgaatatatacatagtatgggattgattcatcgagacattaagccagagaacctgcttcttacttcagatggacatattaaaattgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126724" stop="124125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126424" g_stop="126304" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125096" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="355" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124643" g_stop="124542" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="457" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70">
            <donor d_prob="0.461" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124471" g_stop="124425" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E267909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126424" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125096"/>
          <exon e_start="124643" e_stop="124542"/>
          <exon e_start="124471" e_stop="124425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGGGTAAGTAAATGAAGAACCTTGATGCATGTATTCTTGTTGTTGTTATATGAAGTGTCCAAGTAGAACCCGATGCAATAAGAAAAATGGAAGTTCCTGTCAACCCGTGAACCTTTTGCAGAATATGGATATTGTACTTATTTGAATGAAAGCTAAATGGTTGAGTTCCGTAGGCTGAAATGTAGCCATACTTTGATGTTCTATAAGGTGTCTGTATTATTCTTTCCAACTTCCGAAAAGAATGAACATCTTCTCAAAGGTTCCCTGTGTATTCTGCTTTTTCCAGTCAAAACATTGGTGTTTTTCATGAACTTATTGAAAATGTTCCCGTCCTTTCTTCAAAATATTTCCTTTCTCTAAAGTTTGTGACTACATATATGATGTGCTAATATTCTTGTTTGATTGGCTAGCAAGAGAGGATCATGAACAATGTAGTTTTAACTTTGTGGGTGCAGAAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAGGTATTTCACAAAGTGGACTGTTACGTGAATAATATATGTGGGGGGATTCTGACAGTTCGCTTATTGGCAGCCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGA</genome_strand>
        <mrna_strand>TCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG......................................................................CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406115" ref_strand="+" ref_description="SGN-E406115 [PPI-2-D22]">
      <seq>ctgaagtttaatgggttctttatgtttctgctgttgttcaatggttttgctttcacccctttcatagtttgttgtgaaaaaattcaatctttttgaagatataggaagaatatatgtgtattgtttgaaagaggtttgtgggggtggtgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaaggtgaaatggagcaagaatttgatgcaaagttaaagattcagaacaattcagctaatactcagagatctaagagctttgcttttagggcaccacaggagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcaaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtactcgatcagttagatcatcctggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcgcttgaatcttgtgaaggtggagagctttttgatcaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126969" stop="124801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126669" g_stop="126304" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="546" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125101" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="594" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E406115" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126669" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAA</genome_strand>
        <mrna_strand>CTGAAGTTTAATGGGTTCTTTATGTTTCTGCTGTTGTTCAATGGTTTTGCTTTCACCCCTTTCATAGTTTGTTGTGAAAAA-ATTCAATCTTTTTGAAGATATAGGAAGAATATATGTGTATTGTTTGAAAGAGGTTTGTGGGGGTGGTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGAAATGGAGCAAGAATTTGATGCAAAGTTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCTTTTAGGGCACCACAGGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCAAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTCGATCAGTTAGATCATCCTGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCGCTTGAATCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400029" ref_strand="+" ref_description="SGN-E400029 [cSTC-4-A22]">
      <seq>ggagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagagcaaaaaagaaagatactgcgaatgtttatgccttgaagatcatggacaagaagttcatcactaaggaaaataagactgcttatgtgaaactagagcgtattgtactcgatcagttagatcatcctggtgttgtccgactatttttcacctttcaagacactttttcactgtacatggcgcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126666" stop="124956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126367" g_stop="126304" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125256" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="245" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125148" g_stop="125135" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="259" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E400029" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126367" e_stop="126304"/>
          <exon e_start="125436" e_stop="125256"/>
          <exon e_start="125148" e_stop="125135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGTGTGAGTATTTTATTCATTCTTCATTTAGTGTCTTTCCCCCCATTTTGCATGCACTCTTGTTGATCTTTGGTTTGTCTAATTTAATTGTATTTGTCTGTATTATGAAGACATGGCACTTGAG</genome_strand>
        <mrna_strand>GGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAGCAAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTCGATCAGTTAGATCATCCTGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT...........................................................................................................ACATGGCGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580463" ref_strand="+" ref_description="SGN-E580463 [5706]">
      <seq>tctttttgaagatataggaagaatatatgtgtattgtttgaaagaggtttggtgggggtggtgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaagggtgaaatggagcaagaatttgatgcaacagttaaagattcagaacaattcagctaatactcagagatctaagagctttgcttttagggcaccacaggagaattttacaattcaagattttgaacttggggaagatctatggagttggttcttattccaagggttgtcatgagcaaaacaagaaagatactgcgcaatgtttatgccttggaagatcatggacaagcaagttcatcactaaggaaaataaggactgcttatgtgaaactagagcgtattggtactcgatcagttagatcatcctgggtgttgtccgactatttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126881" stop="124982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126581" g_stop="126304" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125279" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="449" r_length="166" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E580463" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126581" e_stop="126304"/>
          <exon e_start="125436" e_stop="125279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTT-GTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAA-GGTGATATGGAGCAAGAATTTGATGCAA-AGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAA-TTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAA-GGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCA-GAGCGAAA-AAGAAAGATACTGCG-AATGTTTATGCCTT-GAAGATCATGGACAAG-AAGTTCATCACTAAGGAAAATAA-GACTGCTTATGTGAAACTAGAGCGTATT-GTACTTGATCAGTTAGATCATCC-CGGTGTTGTCCGACTATTTTTCAC</genome_strand>
        <mrna_strand>TCTTTTTGAAGATATAGGAAGAATATATGTGTATTGTTTGAAAGAGGTTTGGTGGGGGTGGTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGGTGAAATGGAGCAAGAATTTGATGCAACAGTTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCTTTTAGGGCACCACAGGAGAATTTTACAATTCAAGATTTTGAACTTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCATGAGCAAAACAAGAAAGATACTGCGCAATGTTTATGCCTTGGAAGATCATGGACAAGCAAGTTCATCACTAAGGAAAATAAGGACTGCTTATGTGAAACTAGAGCGTATTGGTACTCGATCAGTTAGATCATCCTGGGTGTTGTCCGACTATTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428155" ref_strand="+" ref_description="SGN-E428155 [STM-49-F18]">
      <seq>atgacatccatcattcattttcatgtgctcttcttctcttcaatccccatataaacatattgtgttattcattcatcttttcttcttgaaatctttattattattaccttagctttctagggtttagagaaaaggggagaaagaaacttaaagctctcacctttatacatatttataaaaatatatacatggtgtctctccttttcttattttagttttttttttttttgcatgtataaggaatcatttgcttttgggtgtctttgacatatggaattgctttatcagaacaaagaaaaagaaagaaagagagaatatataaagaggatatgagctgatgtttaatgggttctttatgtttctgctgttgttcaatggtcttgctttcacccctttcatagtttgttgtgaaaaaattcaatctttttgaagatataggaagaatatatgtgtattgtttgaaagaggtttgtgggggtggtgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtcgggggagaaggtgaaatggagcaagaatttgatgcaaagttaaagattcagaacaattcagctaatactcagagatctaagagctttgcttttagggcaccacaggagaattttacaattcaagattttgaattagggaagatctatggagttggttcttattcccaaggttgtagagcaaaaaagaagatactgcgaatgttatgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="127312" stop="125093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127012" g_stop="126304" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125393" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="741" r_length="41" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E428155" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127012" e_stop="126304"/>
          <exon e_start="125436" e_stop="125393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATCCATCATTCATTTTCATGTGCACTTCTTCTCTTCAATCCCCAAATAAACATATTGTGTTATTCATTCATCTTTTCTTATTGAAATCTTTATTATTATTACCTTAGCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATT-CCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTT</genome_strand>
        <mrna_strand>ATGACATCCATCATTCATTTTCATGTGCTCTTCTTCTCTTCAATCCCCATATAAACATATTGTGTTATTCATTCATCTTTTCTTCTTGAAATCTTTATTATTATTACCTTAGCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATAC---ATGGTGTCTCTCCTTTTC-----TTA-TTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTTCTGCTGTTGTTCAATGGTCTTGCTTTCACCCCTTTCATAGTTTGTTGTG-AAAAAATTCAATCTTTTTGAAGATATAGGAAGAATATATGTGTATTGTTTGAAAGAGGTTTGTGGGGGTGGTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTCGGGGGAGAAGGTGAAATGGAGCAAGAATTTGATGCAAAGTTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCTTTTAGGGCACCACAGGAGAATTTTACAATTCAAGATTTTGAATTAGGGAAGATCTATGGAGTTGGTTCTTATTCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGT-AGAGCAAAAAAG-AAGATACTGCGAATG-TTATGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324373" ref_strand="+" ref_description="SGN-E324373 [cTOC-6-F17]">
      <seq>agaatatataaacagggtgtgagctgatgtttaatgggttctgggtgttactgctgttgttcaatggtgttgctttcactcctttcatagtttgttgtgaaaaaaatccaatctttttgaagatataggaagaatataagtgtattgattgaaaggggtttgtgggggtgctgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaaggtgatatggagcaagaatttgatgcaaagctaaagattcagaacaattcagctaatactcagagatctaagagctttgcatttagggcaccacaagagaattttacaattcaagattttgaattggggaagatctatggagttggttcttattccaaggttgtcagaacgaaaaagaaagatactgcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="126992" stop="125103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126692" g_stop="126304" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125436" g_stop="125403" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="423" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E324373" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126692" e_stop="126304"/>
          <exon e_start="125436" e_stop="125403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAGGTCACTTTTTTCCCCCCTTTGTTCCTTATCTTTGTATTTCCATTTTTTAAAAATTTCAACTTGGTAGCATTTCTATATTTGGTTTCTATTGCTTAAAAATTTCTGCTTAACTGTGAAAATTTAAACTTGTTAGCATTTCTATATTCTTCTTGTTGGCCTTTTTGTTTAGTATGGAAGGGCTTGGTCACTGGTTTATCTCTGTTGTCATTTTTTACTGAATTCCACATGTCTTCCCTTTTGATGGTTCTTTAATCTGTGTAAGCAGAAATTTAGTTTACTGTCCACTGATAAATTTTTTTTGAGGGTTTATCTTTGAAGTTTGTCTGAACTTATCTGGTAAGAAGCTGTTCATTTGAAGAGATTTATACTTATAGAAACTATGCTTTATGGCATTAATGATGTAGGGATGTAAAAATATCATTCTTGTTTCATTTGCTTTTGGTGTAAAGAGAAAATTCTCATTTGTGTTGGTAGTTTGTGTGATCTAATAGATGATTTTGGTTGAACCACAATTTTTGTGTAACATATTTTTGGACACTTTCTTGTTGTGTTGTTTATGGAATATATCTGATTTGTCAAAAAGAAGGAGAAGAAGAAGAAATCACACCCCTAGTGTAGTGCTCCATTTCAGGGGTTGTCATAGACAAATGTGTGATTGAGTTTCTGGCTTATTAGTTTGTACTAGTAACTAACAAGAATCTTCTGAGATGTGTTGTATATCCCTTTTCATCTTCTCACTTTTTCATTAGAATAGATTATGGATATAATTAAAGTACATGAACTCAAATTGTGGTGTTAATGCTTAATTATCGACATGTCAAATTAAAGTTTTAGCATTTAAGTTATTTGCCCTCTATGTTTTATCAGGTTGTCAGAGCGAAAAAGAAAGATACTGCGAATG</genome_strand>
        <mrna_strand>AGAATATATAAACAGGGTGTGAGCTGATGTTTAATGGGTTCTGGGTGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAGAACGAAAAAGAAAGATACTGCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418110" ref_strand="+" ref_description="SGN-E418110 [STM-26-L22]">
      <seq>atattgtgttattcattcatcttttcttcttgaaatctttattattattaccttaactttctagggtttagagaaaaggggagaaagaaacttaaagctctcacctttatacatatttataaaaatatatacataatggtgtctctccttttcttattttagtttttttttttttgcatgtataaggaatcatttacttttgggtgtctttgacatatggaattgctttatcagaacaaagaaaaagaaagaacgagagaatatataaagaggatatgagctgatgtttaatgggttctttatgtttctgctgttgttcaatggtcttgctttcacccctttcatagtttgttgtgaaaaaattcaatctttttgaagatataggaagaatatatgtgtattgtttgaaaggggtttgtggggttggtgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaaggtgaaatggagcaagaatttgatgcaaagttaaagattcagaacaattcagctaatactcagagatctaagagctttgcttttagggcaccacaggagaattttacaattcaagattttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="127256" stop="126039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126956" g_stop="126339" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E418110" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126956" e_stop="126339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTGTTATTCATTCATCTTTTCTTATTGAAATCTTTATTATTATTACCTTAGCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAAT</genome_strand>
        <mrna_strand>ATATTGTGTTATTCATTCATCTTTTCTTCTTGAAATCTTTATTATTATTACCTTAACTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTC-----TTA-TTTTAG-TTTTTTTTTTTTTGCATGTATAAGGAATCATTTACTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAACGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTTCTGCTGTTGTTCAATGGTCTTGCTTTCACCCCTTTCATAGTTTGTTGTG-AAAAAATTCAATCTTTTTGAAGATATAGGAAGAATATATGTGTATTGTTTGAAAGGGGTTTGTGGGGTTGGTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGAAATGGAGCAAGAATTTGATGCAAAGTTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCTTTTAGGGCACCACAGGAGAATTTTACAATTCAAGATTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440920" ref_strand="+" ref_description="SGN-E440920 [cSTA-28-D1]">
      <seq>atattgtgttattcattcatcttttcttcttgaaatctttattattattacccttaacctttctagggtttagagaaaaggggagaaagaaacttaaagctctcaccctttataccatatttataaaaatatataccataatggtgtctctccttttcttattttagtttttttttttttgccatgtataaggaatcatttaccttttgggtgtctttgaccatatggaattgctttatcagaaccaaagaaaaagaaagaacgagagaatatataaagaggatatgagcctgatgtttaatgggttctttatgtttctgctgttgttcaatggtcttgctttcccccctttcatagtttgttgtgaaaaaattcaatctttttgaagatataggaagaatatatgtgtattgtttgaaaggggtttgtggggttggtgaaagattaggtttttttcttgtttgagggtgaaatgttggcattggtagggggagaaggtgaaatggagcaagaatttgatgcaaagttaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="127256" stop="126124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126956" g_stop="126424" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E440920" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126956" e_stop="126424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTGTTATTCATTCATCTTTTCTTATTGAAATCTTTATTATTATTA-CCTT-AGCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCA-CCTTTATA-CATATTTATAAAAATATATA-CATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTT-GCTTTTGGGTGTCTTTGA-CATATGGAATTGCTTTATCAGAA-CAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAG-CTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATT</genome_strand>
        <mrna_strand>ATATTGTGTTATTCATTCATCTTTTCTTCTTGAAATCTTTATTATTATTACCCTTAACCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCCTTTATACCATATTTATAAAAATATATACCATAATGGTGTCTCTCCTTTTC-----TTA-TTTTAGTTTTTTTTTTTTTGCCATGTATAAGGAATCATTTACCTTTTGGGTGTCTTTGACCATATGGAATTGCTTTATCAGAACCAAAGAAAAAGAAAGAACGAGAGAATATATAAAGAGGATATGAGCCTGATGTTTAATGGGTTCTTTATGTTTCTGCTGTTGTTCAATGGTCTTGCTTTCCCCCCTTTCATAGTTTGTTGTG-AAAAAATTCAATCTTTTTGAAGATATAGGAAGAATATATGTGTATTGTTTGAAAGGGGTTTGTGGGGTTGGTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGAAATGGAGCAAGAATTTGATGCAAAGTTAAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317016" ref_strand="+" ref_description="SGN-E317016 [cTOA-27-G23]">
      <seq>aaaaggggagaaagaaacttaaagctctcacctttatacatatttataaaaatatatacataatggtgtctctccttttctaattttagttttagtttttttttttttgcatgtataaggaatcatttgcttttgggtgtctttgacatatggaattgctttatcagaacaaagaaaaagaaagaaagagagaatatataaagaggatatgagctgatgtttaatgggttctttatgttactgctgttgttcaatggtgttgctttcactcctttcatagtttgttgtgaaaaaaatccaatctttttgaagatataggaagaatataagtgtattgattgaaaagggtttgtgggggtgctgaaagaataagtttttttcttgtttgaaggtgaaatgttggcattggtagggggagaaagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="127183" stop="126156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126883" g_stop="126456" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E317016" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126883" e_stop="126456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATA</genome_strand>
        <mrna_strand>AAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAG-TTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAAGGGTTTGTGGGGGTGCTGAAAGAATAAGTTTTTTTCTTGTTTGAAGGTGAAATGTTGGCATTGGTAGGGGGAGAAAGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353450" ref_strand="+" ref_description="SGN-E353450 [cTOS-15-P2]">
      <seq>aggggatttaaggtatggcgtgagtaccctgaacgcatcgttgggttttacccccggcttgcagatggaaacccattgaaatatagagctgagaatcatgctcgcgagcacaatggatacaacatgattcttacaggagctgccttcatggacagcaaaatggctttcgaaaagtactggagcaatgaagctgcagcaggaagggccgtggtggacaagcttttcaactgtgaagatgtgttgctaaactacttgtatgcaaacgcgagctcctccagtacagttgaatacgtaaaaccagcatgggcaatcgatacttcaaagttttctggcgttgcaattagccggaatacacagactcactatggactcagaagcagttgcctccaaaagttctcagaaatgtatggaagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="132419" stop="131403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132119" g_stop="131703" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E353450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132119" e_stop="131703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</genome_strand>
        <mrna_strand>AGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208999" ref_strand="+" ref_description="SGN-E208999 [cLEC-38-O2]">
      <seq>ttcaaagtagatcctttgataaagacacgagcagttcttgaacttgatgatgacattatgatgccttgtgatgatgttgaaaggggatttaaggtatggcgtgagtaccctgaacgcatcgttgggttttacccccggcttgcagatggaaacccattgaaatatagagctgagaatcatgctcgcgagcacaatggatacaacatgattcttacaggagctgccttcatggacagcaaaatggctttcgaaaagtactggagcaatgaagctgcagcaggaagggccgtggtggacaagcttttcaactgtgaagatgtgttgctaaactacttgtatgcaaacgcgagctcctccagtacagttgaatacgtaaaaccagcatgggcaatcgatacttcaaagttttctggcgttgcaattagccggaatacacagactcactatggactcagaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="132500" stop="131440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132200" g_stop="131740" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E208999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132200" e_stop="131740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAG</genome_strand>
        <mrna_strand>TTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293517" ref_strand="+" ref_description="SGN-E293517 [cLET-15-L10]">
      <seq>taagttggtgccctcacaatgttggaaagaggagtgacgcttcgttcgattgggaaagatcaagcttgttatctaatagaatgaggctattttgtagtcggttgaacagagcaagctcgtctctccgtgccagaataaagcctaaaacatgcagtggaggattggttcttgctgtaatctttatagtcactgtggtgttaatgtgcactggagttaaatacatctatggaggcagcggtgcagaggaagcttacccgttaaatggtcagtactctcagttcactttattaacaatgacctacgatgctcggctctggaacttgaaaatgtatgtcaagcattactcaaggtgttcttcagtacgtgagatcgttgtagtgtggaataaaggccaacctccagaactgagtgagctcgattcagcagtgccagtgaggataagagtagagaaacagatctcactaaacaatcgattcaaagtagatcctttgataaagacacgagcagttcttgaacttgatgatgacattatgatgccttgtgatgatgttgaaaggggatttaaggtatggcgtgagtaccctgaacgcatcgttgggttttacccccggcttgcagatggaaacccattgaaatatagagctgagaatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="132613" stop="131719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132613" g_stop="132019" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="655" r_length="595" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-E293517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132613" e_stop="132019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGAACTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGC</genome_strand>
        <mrna_strand>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGATCTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>195</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10155" PGL_stop="4807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10155" e_stop="9936"/>
            <exon e_start="9156" e_stop="8677"/>
            <exon e_start="8252" e_stop="8164"/>
            <exon e_start="7833" e_stop="7734"/>
            <exon e_start="6283" e_stop="6056"/>
            <exon e_start="5152" e_stop="4807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.855" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10155" e_stop="9936" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9156" e_stop="8677" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8252" e_stop="8164" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.951">
            <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7833" e_stop="7734" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.962">
            <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6283" e_stop="6056" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.855">
            <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="5152" e_stop="4807" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10155" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6056"/>
              <exon start="5152" stop="4830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10143" stop="9936"/>
              <exon start="9156" stop="8908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10136" stop="9936"/>
              <exon start="9156" stop="8709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10136" stop="9936"/>
              <exon start="9156" stop="8758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10122" stop="9936"/>
              <exon start="9156" stop="8796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10119" stop="9936"/>
              <exon start="9156" stop="8777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10108" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10106" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10101" stop="9936"/>
              <exon start="9156" stop="8708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10086" stop="9936"/>
              <exon start="9156" stop="8789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10078" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10070" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8991" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8813" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7781" stop="7734"/>
              <exon start="6283" stop="6056"/>
              <exon start="5152" stop="4807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6263" stop="6056"/>
              <exon start="5152" stop="4823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6212" stop="6056"/>
              <exon start="5152" stop="4830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213542" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGAAAAGCGCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG : GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG : GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG : CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG : GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG : ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAAATCTTTTGTTAGTTTCTTATATC</gDNA_template>
            <first_frame> E  E  K  S  A  T  T  Q  N  C  K  N  R  L  F  H  L  N  N  S  S  S  S  S  S  S  Y  G  E  K  R  *  F  H  S  E  K  E  E  *  E  E  *  K  E  A  R  *  Q  G  I  *  S  Y  R  W  N  H  C  C  *  E  T  S  T  L  R  Q  T  P  Y  V  *   : G  N  V  L  *  F  T  Y  T  *  G  S  I  Q  *  E  A  W  K  S  *  S  C  K  E  E  E  E  E  A  E  P  V  E  K  G  Q  E  P  Y  *  E  D  R  F  T  T  K  F  *  Q  I  K  G  R  V  P  H  A  C  S  I  *  V  L  N  S  L  F  E  K  H  S  G  *  P  S  A  G  W  S  L  Q  W  *  R  G  K  A  F  L  H  P  Y  M  G  N  *  I  L  E  I  F  Y  Q  W  Q  R  Y  Y  W  Y  K  S  S  P  C  Y  N  *  A  N  C  L  G  C  S  N  N  C  *  C  H  I  K  K  G  E  R  R  S  I  N  *  Q  P  L  P  F  I  P  C  S  L  P  R  E  S  C  Q   : G  A  E  N  M  Q  A  S  E  S  S  W  N  T  Y  S  E  S  A  S  W  C  F  Y  R  P  P  D  S  G  :  P  E  E  L  *  A  R  I  S  Y  F  Y  S  *  K  T  S  R  T  P  L  T  W  C  H  *  N  F  *  C  F  F  P   : G  H  R  W  T  S  F  *  D  R  L  C  *  C  G  *  I  H  C  K  I  Y  F  W  K  A  T  N  T  G  F  Q  *  L  L  K  F  F  I  Q  F  S  Y  E  E  E  C  W  R  I  N  L  *  N  T  A  *  *  S  S  K  *  S  *  H  G  L  R  Y  L  C  F  *  V  V  N   : D  K  R  D  M  L  S  L  Q  L  I  C  L  I  I  V  T  D  P  L  A  S  F  N  L  I  E  E  S  S  V  I  V  N  F  F  H  I  T  G  A  A  T  C  C  Y  F  S  H  C  L  Q  N  S  L  L  Y  S  R  C  I  R  D  I  L  D  K  R  F  S  M  L  C  *  E  R  K  L  I  V  T  P  Y  G  L  L  C  S  G  N  S  P  T  G  *  L  Q  E  M  H  I  T  P  F  L  L  F  E  I  F  C  *  F  L  I   </first_frame>
            <second_frame>  K  R  K  A  P  L  H  K  T  A  K  T  A  S  F  T  *  T  T  A  A  A  A  A  A  A  M  G  K  S  D  D  S  I  Q  R  R  K  N  K  K  S  R  K  K  Q  D  D  K  V  S  N  R  I  A  G  I  I  A  A  K  K  R  R  L  S  G  K  R  R  M  C  E  :  G  M  C  Y  S  L  P  T  P  E  D  P  F  N  E  R  H  G  K  V  D  P  V  K  K  K  K  K  K  Q  N  Q  S  K  K  G  K  N  P  I  K  K  T  G  L  P  Q  N  S  D  K  L  K  E  E  F  H  M  H  A  P  S  K  F  L  I  L  C  L  K  N  I  Q  D  D  L  Q  Q  D  G  A  F  S  G  R  E  E  K  P  F  F  I  H  T  W  G  I  E  F  W  K  Y  F  T  S  G  K  D  I  I  G  T  N  Q  A  H  A  T  T  E  Q  I  A  W  V  A  A  T  T  A  D  A  I  S  R  K  E  K  E  G  L  S  I  S  N  P  Y  L  L  F  L  V  P  S  Q  E  K  A  V  K  :  V  R  K  I  C  K  P  L  K  A  L  G  I  H  T  V  S  L  H  P  G  A  S  I  D  H  Q  I  Q  G :   L  K  N  C  E  P  E  F  L  I  S  T  P  E  R  L  Q  E  L  L  S  H  G  A  I  K  T  S  D  V  S  F  L  :  V  I  D  G  P  L  S  E  T  G  Y  V  D  A  V  E  S  I  A  K  S  I  S  G  K  P  Q  I  L  A  F  N  D  C  S  N  S  S  S  N  F  L  M  K  K  S  V  G  E  S  I  C  R  I  P  L  D  D  P  V  N  D  H  N  M  A  *  D  I  C  A  S  K  L  S  M  :  T  N  A  T  C  C  P  C  S  *  F  A  L  S  S  L  Q  I  L  W  R  H  S  T  *  *  K  K  V  L  *  L  *  T  S  S  I  S  P  V  Q  L  R  A  A  T  F  H  I  V  C  K  I  L  C  Y  T  V  D  V  F  E  I  S  *  I  K  G  S  Q  C  C  V  R  R  G  S  *  L  *  P  H  M  V  C  C  V  L  G  I  A  Q  L  D  N  C  R  R  C  I  *  P  L  F  Y  Y  L  K  S  F  V  S  F  L  Y  </second_frame>
            <third_frame>   R  E  K  R  H  Y  T  K  L  Q  K  P  P  L  S  L  E  Q  Q  Q  Q  Q  Q  Q  Q  L  W  G  K  A  M  I  P  F  R  E  G  R  I  R  R  V  E  R  S  K  M  T  R  Y  L  I  V  S  L  E  S  L  L  L  R  N  V  D  S  P  A  N  A  V  C  V  R :   E  C  A  I  V  Y  L  H  L  R  I  H  S  M  R  G  M  E  K  L  I  L  *  R  R  R  R  R  S  R  T  S  R  K  R  A  R  T  L  L  R  R  P  V  Y  H  K  I  L  T  N  *  R  K  S  S  T  C  M  L  H  L  S  S  *  F  S  V  *  K  T  F  R  M  T  F  S  R  M  E  P  S  V  V  E  R  K  S  L  S  S  S  I  H  G  E  L  N  S  G  N  I  L  P  V  A  K  I  L  L  V  Q  I  K  P  M  L  Q  L  S  K  L  L  G  L  Q  Q  Q  L  L  M  P  Y  Q  E  R  R  K  K  V  Y  Q  L  A  T  P  T  F  Y  S  L  F  P  P  K  R  K  L  S  R :   C  G  K  Y  A  S  L  *  K  L  L  E  Y  I  Q  *  V  C  I  L  V  L  L  *  T  T  R  F  R   : A  *  R  T  V  S  P  N  F  L  F  L  L  L  K  D  F  K  N  S  S  H  M  V  P  L  K  L  L  M  F  L  S  W :   S  S  M  D  L  F  L  R  Q  V  M  L  M  R  L  N  P  L  Q  N  L  F  L  E  S  H  K  Y  W  L  S  M  I  A  Q  I  L  H  P  I  F  L  *  R  R  V  L  E  N  Q  S  V  E  Y  R  L  M  I  Q  *  M  I  I  T  W  L  E  I  F  V  L  L  S  C  Q  * :   Q  T  R  H  A  V  L  A  V  D  L  P  Y  H  R  Y  R  S  S  G  V  I  Q  L  N  R  R  K  F  C  N  C  K  L  L  P  Y  H  R  C  S  Y  V  L  L  L  F  T  L  S  A  K  F  F  V  I  Q  *  M  Y  S  R  Y  L  R  *  K  V  L  N  V  V  L  G  E  E  V  N  C  N  P  I  W  S  V  V  F  W  E  *  P  N  W  I  I  A  G  D  A  Y  N  P  F  F  T  I  *  N  L  L  L  V  S  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10103" stop="9936"/>
                    <exon start="9156" stop="8677"/>
                    <exon start="8252" stop="8164"/>
                    <exon start="7833" stop="7734"/>
                    <exon start="6283" stop="6083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTAAAAAAAMGKSDDSIQRRKNKKSRKKQDDKVSNRIAGIIAAKKRRLSGKRRMCEGMCYSLPTPEDPFNERHGKVDPVKKKKKKQNQSKKGKNPIKKTGLPQNSDKLKEEFHMHAPSKFLILCLKNIQDDLQQDGAFSGREEKPFFIHTWGIEFWKYFTSGKDIIGTNQAHATTEQIAWVAATTADAISRKEKEGLSISNPYLLFLVPSQEKAVKVRKICKPLKALGIHTVSLHPGASIDHQIQGLKNCEPEFLISTPERLQELLSHGAIKTSDVSFLVIDGPLSETGYVDAVESIAKSISGKPQILAFNDCSNSSSNFLMKKSVGESICRIPLDDPVNDHNMA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6065" stop="6056"/>
                    <exon start="5152" stop="4932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVNDKRDMLSLQLICLIIVTDPLASFNLIEESSVIVNFFHITGAATCCYFSHCLQNSLLYSRCIRDILDKRFSMLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10143" e_stop="9936"/>
            <exon e_start="9156" e_stop="8677"/>
            <exon e_start="8252" e_stop="8164"/>
            <exon e_start="7833" e_stop="7734"/>
            <exon e_start="6283" e_stop="6056"/>
            <exon e_start="5696" e_stop="5673"/>
            <exon e_start="5305" e_stop="5301"/>
            <exon e_start="5152" e_stop="5026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.000" e_score="0.975"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.905" acc_prob="0.855" e_score="0.800"/>
          <exon-only e_score="0.780"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10143" e_stop="9936" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9156" e_stop="8677" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8252" e_stop="8164" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.951">
            <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7833" e_stop="7734" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.962">
            <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="6283" e_stop="6056" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6055" i_stop="5697" i_length="359"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="5696" e_stop="5673" e_length="24"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5672" i_stop="5306" i_length="367"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="5305" e_stop="5301" e_length="5"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.855">
            <gDNA_intron_boundary i_start="5300" i_stop="5153" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="0.780">
            <gDNA_exon_boundary e_start="5152" e_stop="5026" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10143" stop="9936"/>
              <exon start="9156" stop="8908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10136" stop="9936"/>
              <exon start="9156" stop="8709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10136" stop="9936"/>
              <exon start="9156" stop="8758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10122" stop="9936"/>
              <exon start="9156" stop="8796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10119" stop="9936"/>
              <exon start="9156" stop="8777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10108" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10106" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10101" stop="9936"/>
              <exon start="9156" stop="8708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10086" stop="9936"/>
              <exon start="9156" stop="8789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10078" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10070" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8991" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8813" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8796" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6056"/>
              <exon start="5696" stop="5673"/>
              <exon start="5305" stop="5301"/>
              <exon start="5152" stop="5026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG : GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG : GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG : CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG : GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG : ACCCCACACGTGCGACTGTACTGG : TAGTT : ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTAC</gDNA_template>
            <first_frame> A  T  T  Q  N  C  K  N  R  L  F  H  L  N  N  S  S  S  S  S  S  S  Y  G  E  K  R  *  F  H  S  E  K  E  E  *  E  E  *  K  E  A  R  *  Q  G  I  *  S  Y  R  W  N  H  C  C  *  E  T  S  T  L  R  Q  T  P  Y  V  *   : G  N  V  L  *  F  T  Y  T  *  G  S  I  Q  *  E  A  W  K  S  *  S  C  K  E  E  E  E  E  A  E  P  V  E  K  G  Q  E  P  Y  *  E  D  R  F  T  T  K  F  *  Q  I  K  G  R  V  P  H  A  C  S  I  *  V  L  N  S  L  F  E  K  H  S  G  *  P  S  A  G  W  S  L  Q  W  *  R  G  K  A  F  L  H  P  Y  M  G  N  *  I  L  E  I  F  Y  Q  W  Q  R  Y  Y  W  Y  K  S  S  P  C  Y  N  *  A  N  C  L  G  C  S  N  N  C  *  C  H  I  K  K  G  E  R  R  S  I  N  *  Q  P  L  P  F  I  P  C  S  L  P  R  E  S  C  Q   : G  A  E  N  M  Q  A  S  E  S  S  W  N  T  Y  S  E  S  A  S  W  C  F  Y  R  P  P  D  S  G  :  P  E  E  L  *  A  R  I  S  Y  F  Y  S  *  K  T  S  R  T  P  L  T  W  C  H  *  N  F  *  C  F  F  P   : G  H  R  W  T  S  F  *  D  R  L  C  *  C  G  *  I  H  C  K  I  Y  F  W  K  A  T  N  T  G  F  Q  *  L  L  K  F  F  I  Q  F  S  Y  E  E  E  C  W  R  I  N  L  *  N  T  A  *  *  S  S  K  *  S  *  H  G  L  R  Y  L  C  F  *  V  V  N   : D  P  T  R  A  T  V  L   : V  V  :  T  N  A  T  C  C  P  C  S  *  F  A  L  S  S  L  Q  I  L  W  R  H  S  T  *  *  K  K  V  L  *  L  *  T  S  S  I  S  P  V  Q  L  </first_frame>
            <second_frame>  P  L  H  K  T  A  K  T  A  S  F  T  *  T  T  A  A  A  A  A  A  A  M  G  K  S  D  D  S  I  Q  R  R  K  N  K  K  S  R  K  K  Q  D  D  K  V  S  N  R  I  A  G  I  I  A  A  K  K  R  R  L  S  G  K  R  R  M  C  E  :  G  M  C  Y  S  L  P  T  P  E  D  P  F  N  E  R  H  G  K  V  D  P  V  K  K  K  K  K  K  Q  N  Q  S  K  K  G  K  N  P  I  K  K  T  G  L  P  Q  N  S  D  K  L  K  E  E  F  H  M  H  A  P  S  K  F  L  I  L  C  L  K  N  I  Q  D  D  L  Q  Q  D  G  A  F  S  G  R  E  E  K  P  F  F  I  H  T  W  G  I  E  F  W  K  Y  F  T  S  G  K  D  I  I  G  T  N  Q  A  H  A  T  T  E  Q  I  A  W  V  A  A  T  T  A  D  A  I  S  R  K  E  K  E  G  L  S  I  S  N  P  Y  L  L  F  L  V  P  S  Q  E  K  A  V  K  :  V  R  K  I  C  K  P  L  K  A  L  G  I  H  T  V  S  L  H  P  G  A  S  I  D  H  Q  I  Q  G :   L  K  N  C  E  P  E  F  L  I  S  T  P  E  R  L  Q  E  L  L  S  H  G  A  I  K  T  S  D  V  S  F  L  :  V  I  D  G  P  L  S  E  T  G  Y  V  D  A  V  E  S  I  A  K  S  I  S  G  K  P  Q  I  L  A  F  N  D  C  S  N  S  S  S  N  F  L  M  K  K  S  V  G  E  S  I  C  R  I  P  L  D  D  P  V  N  D  H  N  M  A  *  D  I  C  A  S  K  L  S  M  :  T  P  H  V  R  L  Y  W  :  *  L :   Q  T  R  H  A  V  L  A  V  D  L  P  Y  H  R  Y  R  S  S  G  V  I  Q  L  N  R  R  K  F  C  N  C  K  L  L  P  Y  H  R  C  S  Y </second_frame>
            <third_frame>   H  Y  T  K  L  Q  K  P  P  L  S  L  E  Q  Q  Q  Q  Q  Q  Q  Q  L  W  G  K  A  M  I  P  F  R  E  G  R  I  R  R  V  E  R  S  K  M  T  R  Y  L  I  V  S  L  E  S  L  L  L  R  N  V  D  S  P  A  N  A  V  C  V  R :   E  C  A  I  V  Y  L  H  L  R  I  H  S  M  R  G  M  E  K  L  I  L  *  R  R  R  R  R  S  R  T  S  R  K  R  A  R  T  L  L  R  R  P  V  Y  H  K  I  L  T  N  *  R  K  S  S  T  C  M  L  H  L  S  S  *  F  S  V  *  K  T  F  R  M  T  F  S  R  M  E  P  S  V  V  E  R  K  S  L  S  S  S  I  H  G  E  L  N  S  G  N  I  L  P  V  A  K  I  L  L  V  Q  I  K  P  M  L  Q  L  S  K  L  L  G  L  Q  Q  Q  L  L  M  P  Y  Q  E  R  R  K  K  V  Y  Q  L  A  T  P  T  F  Y  S  L  F  P  P  K  R  K  L  S  R :   C  G  K  Y  A  S  L  *  K  L  L  E  Y  I  Q  *  V  C  I  L  V  L  L  *  T  T  R  F  R   : A  *  R  T  V  S  P  N  F  L  F  L  L  L  K  D  F  K  N  S  S  H  M  V  P  L  K  L  L  M  F  L  S  W :   S  S  M  D  L  F  L  R  Q  V  M  L  M  R  L  N  P  L  Q  N  L  F  L  E  S  H  K  Y  W  L  S  M  I  A  Q  I  L  H  P  I  F  L  *  R  R  V  L  E  N  Q  S  V  E  Y  R  L  M  I  Q  *  M  I  I  T  W  L  E  I  F  V  L  L  S  C  Q  * :   P  H  T  C  D  C  T  G :   S   : Y  K  R  D  M  L  S  L  Q  L  I  C  L  I  I  V  T  D  P  L  A  S  F  N  L  I  E  E  S  S  V  I  V  N  F  F  H  I  T  G  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10103" stop="9936"/>
                    <exon start="9156" stop="8677"/>
                    <exon start="8252" stop="8164"/>
                    <exon start="7833" stop="7734"/>
                    <exon start="6283" stop="6083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTAAAAAAAMGKSDDSIQRRKNKKSRKKQDDKVSNRIAGIIAAKKRRLSGKRRMCEGMCYSLPTPEDPFNERHGKVDPVKKKKKKQNQSKKGKNPIKKTGLPQNSDKLKEEFHMHAPSKFLILCLKNIQDDLQQDGAFSGREEKPFFIHTWGIEFWKYFTSGKDIIGTNQAHATTEQIAWVAATTADAISRKEKEGLSISNPYLLFLVPSQEKAVKVRKICKPLKALGIHTVSLHPGASIDHQIQGLKNCEPEFLISTPERLQELLSHGAIKTSDVSFLVIDGPLSETGYVDAVESIAKSISGKPQILAFNDCSNSSSNFLMKKSVGESICRIPLDDPVNDHNMA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25941" PGL_stop="28335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25941" e_stop="28335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="25941" e_stop="28335" e_length="2395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25941" stop="26637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26272" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26777" stop="27370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27070" stop="27664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27603" stop="28276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27603" stop="28078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27953" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAGTAATTTGCTGGTGGATTTGAGTTTGAGATCGTTCTTGAATATACCCTTTGATACTAGAGATGGTTGCTGAATCTTGGTTTCGTAATTTCTGGAAAAATTCGAAAAAGCATGAGGGTGGTGGTCATCAAAAGGTGCTAGTTGGTGTTCTAGCATTTGAAGTTGCAAGTTTGATGTCTAAGCTGGTTCATGTATGGCAGTCTCTAAGTGATAAACAAGTGGCTAGATTGAGGGATGAGATAATGAACTCGGTCGGTATAAAGAAGCTTATTTCGGATGATGATTCATATACTGCAAGATTGATATGTACTGAGTTGGTTGAGAACTTGGGACATGTAGCAACTGCTGTTTCTAGGCTTGCAAAGAAATGTAATGATCCGTTCTTGAAGAGTTTCGAGCAAGCCTTCAATGATTTGCTAAAAGTTGGTGCTGATCCATACGGGTGGCAACTCTCATGGAAGAAGATGGACAAAAAAATCAAGAAGATGGAACGGTTTATTGTGATAAATGCGAATTTGTATCAAGAAATGGAGAATCTTTCTGATCTTGAACAGACATTGAGGAGATTGAAGGGAAATGATGATGCAGATAGTATTACCTTGGTTGAATACGAGAAGAAGCTTGCGTGGAAGAAGCAGGAGGTGAAGCACCTTAAGGATGTCTCTATTTGGAATAGAACTTACGATTATATTGTCCGTCTTTTGGCGAGATCCTTGTTTTCTATATTTAGTAGGATAGGGCATGTGTTTGGAGTTGATCCCGTTGTGGATGAGAGGGCTAAAGCATCCAGAGATCTAGATTCTGATCAAATCCATCGGAGCTACTCAGTTGCTTATGCTCAGTCATCTGTTCACCCATCTGAAAGTAGTCTCTCTAGATTTTCTTCGGAACCAGTAGAAAGCATCCTTGCGAAATCTGGACCAATTTCGAGCACTAGGAACATTCACAGTTCTTATTCCGGTCCCTTGAAAAGTTCAACATCAACAGCAAGCCCGATTCCTGGAAGGCATTCTTCTGCTGGTTTCTATTCGGGTCCTCTGGGGAGGTCAACAACAAAATCTGGTCCTCTCCCTCTATTTAATAAATCCGGCATGAAGTGGTGGAAATCCCGTGATCGTTCAGGTAACCTAAATGGAAAAGGCTCAAATTTAAAACATGCTCGACCGACCTCTGGACCGCTTAAAGGCTGCATGATGGTTGGGAATGGTTCTCCTGTAAGTAATTGCCATCTAGATCCACACGGATTTCATTCAGGTTTTCTAAATGCAACGAAAGGAGCTGGTGTAGATGGACTTGCTGATGGCTATTCAACTTGCTCTTATCTAACAAGTTATAATGCGAAAAAAAGGCTGTTAAATGCTCCTCCAGAAACTCTCGGGGCTGCTGCCTTAGCACTGCATTATGCAAATGTCATTATCGTGACTGAGAAACTAGTGGCATCTCCTCACTTGATCGGACATGATGCAAGAGAAGACCTGTACAACATGCTACCGGCTAGTTTAAGAGCAGCCCTCAGGGCGAAATTAAAACCATTTGCTAAGAGCTTGACGTCATCCGTTTATGACACAGTTCTTGCTGGAGAATGGAATGAAGCAATGCTGGGGATACTAGAATGGCTTGCTCCTCTTGCTCATAATATGATAAGATGGCAGTCCGAGCGGAGTTTCGAGCATCAGAACTTTGTTTCCAGAACAAATGTGCTGCTAGTACAAACCCTTTATTATGCAAATCAAGAAAAGACAGAATCAGCAATCACAGAGCTGCTCGTTGGTTTGAACTACATATGGAGGTATGGCAGGGAAGTGAATGCTAAAGCGATAGAGGAATGTGCTAGTGCTAGAATGATGTTTAATGATGATTACTTGGATGACTGACAAACATTTTGATCTTTAGTCAGTGATTTTGGGCTTGAATGTTTTGGAGTTGAGGAACTGTTCCACGGCAAAATGCCTCTCTTCAGAAGCAAAGCACGAGTCTTCTCTGCCAAGTTTTTTCAACTGTTGCTGATTCAAGCTACTCAGATTCCATGAGATTCCTTATTCGTCAAAAGGGTGACGAATACTGCAGAAATGTAACACACTTAAAGCTTCTGAACATTCTTTCAGGTCAGTAAGCCATGACCATTTTCCTATTTTGCCAGCAGAACTTGGGATCACATTTGATGAATCGGAGTCCACGCTATAAATTCTATATCTTGTTATTTTGTTAAATGTATAGAATTAGCTGAGATTGTTTTTTCTAGCTTTGTATATTTACATAACAAAGGCTTTCTTTTAGCATATAAGATAATGAAAGGTTTGGTGCAGTAGTTTGTTCTTGATGAACTTTTGGAGTATCTTTGCAATACTATGAAGCAAGAAATTTGAGAATTAGTAAAGCCACATTTCTGGCC</gDNA_template>
            <first_frame> Q  K  *  F  A  G  G  F  E  F  E  I  V  L  E  Y  T  L  *  Y  *  R  W  L  L  N  L  G  F  V  I  S  G  K  I  R  K  S  M  R  V  V  V  I  K  R  C  *  L  V  F  *  H  L  K  L  Q  V  *  C  L  S  W  F  M  Y  G  S  L  *  V  I  N  K  W  L  D  *  G  M  R  *  *  T  R  S  V  *  R  S  L  F  R  M  M  I  H  I  L  Q  D  *  Y  V  L  S  W  L  R  T  W  D  M  *  Q  L  L  F  L  G  L  Q  R  N  V  M  I  R  S  *  R  V  S  S  K  P  S  M  I  C  *  K  L  V  L  I  H  T  G  G  N  S  H  G  R  R  W  T  K  K  S  R  R  W  N  G  L  L  *  *  M  R  I  C  I  K  K  W  R  I  F  L  I  L  N  R  H  *  G  D  *  R  E  M  M  M  Q  I  V  L  P  W  L  N  T  R  R  S  L  R  G  R  S  R  R  *  S  T  L  R  M  S  L  F  G  I  E  L  T  I  I  L  S  V  F  W  R  D  P  C  F  L  Y  L  V  G  *  G  M  C  L  E  L  I  P  L  W  M  R  G  L  K  H  P  E  I  *  I  L  I  K  S  I  G  A  T  Q  L  L  M  L  S  H  L  F  T  H  L  K  V  V  S  L  D  F  L  R  N  Q  *  K  A  S  L  R  N  L  D  Q  F  R  A  L  G  T  F  T  V  L  I  P  V  P  *  K  V  Q  H  Q  Q  Q  A  R  F  L  E  G  I  L  L  L  V  S  I  R  V  L  W  G  G  Q  Q  Q  N  L  V  L  S  L  Y  L  I  N  P  A  *  S  G  G  N  P  V  I  V  Q  V  T  *  M  E  K  A  Q  I  *  N  M  L  D  R  P  L  D  R  L  K  A  A  *  W  L  G  M  V  L  L  *  V  I  A  I  *  I  H  T  D  F  I  Q  V  F  *  M  Q  R  K  E  L  V  *  M  D  L  L  M  A  I  Q  L  A  L  I  *  Q  V  I  M  R  K  K  G  C  *  M  L  L  Q  K  L  S  G  L  L  P  *  H  C  I  M  Q  M  S  L  S  *  L  R  N  *  W  H  L  L  T  *  S  D  M  M  Q  E  K  T  C  T  T  C  Y  R  L  V  *  E  Q  P  S  G  R  N  *  N  H  L  L  R  A  *  R  H  P  F  M  T  Q  F  L  L  E  N  G  M  K  Q  C  W  G  Y  *  N  G  L  L  L  L  L  I  I  *  *  D  G  S  P  S  G  V  S  S  I  R  T  L  F  P  E  Q  M  C  C  *  Y  K  P  F  I  M  Q  I  K  K  R  Q  N  Q  Q  S  Q  S  C  S  L  V  *  T  T  Y  G  G  M  A  G  K  *  M  L  K  R  *  R  N  V  L  V  L  E  *  C  L  M  M  I  T  W  M  T  D  K  H  F  D  L  *  S  V  I  L  G  L  N  V  L  E  L  R  N  C  S  T  A  K  C  L  S  S  E  A  K  H  E  S  S  L  P  S  F  F  N  C  C  *  F  K  L  L  R  F  H  E  I  P  Y  S  S  K  G  *  R  I  L  Q  K  C  N  T  L  K  A  S  E  H  S  F  R  S  V  S  H  D  H  F  P  I  L  P  A  E  L  G  I  T  F  D  E  S  E  S  T  L  *  I  L  Y  L  V  I  L  L  N  V  *  N  *  L  R  L  F  F  L  A  L  Y  I  Y  I  T  K  A  F  F  *  H  I  R  *  *  K  V  W  C  S  S  L  F  L  M  N  F  W  S  I  F  A  I  L  *  S  K  K  F  E  N  *  *  S  H  I  S  G  </first_frame>
            <second_frame>  R  S  N  L  L  V  D  L  S  L  R  S  F  L  N  I  P  F  D  T  R  D  G  C  *  I  L  V  S  *  F  L  E  K  F  E  K  A  *  G  W  W  S  S  K  G  A  S  W  C  S  S  I  *  S  C  K  F  D  V  *  A  G  S  C  M  A  V  S  K  *  *  T  S  G  *  I  E  G  *  D  N  E  L  G  R  Y  K  E  A  Y  F  G  *  *  F  I  Y  C  K  I  D  M  Y  *  V  G  *  E  L  G  T  C  S  N  C  C  F  *  A  C  K  E  M  *  *  S  V  L  E  E  F  R  A  S  L  Q  *  F  A  K  S  W  C  *  S  I  R  V  A  T  L  M  E  E  D  G  Q  K  N  Q  E  D  G  T  V  Y  C  D  K  C  E  F  V  S  R  N  G  E  S  F  *  S  *  T  D  I  E  E  I  E  G  K  *  *  C  R  *  Y  Y  L  G  *  I  R  E  E  A  C  V  E  E  A  G  G  E  A  P  *  G  C  L  Y  L  E  *  N  L  R  L  Y  C  P  S  F  G  E  I  L  V  F  Y  I  *  *  D  R  A  C  V  W  S  *  S  R  C  G  *  E  G  *  S  I  Q  R  S  R  F  *  S  N  P  S  E  L  L  S  C  L  C  S  V  I  C  S  P  I  *  K  *  S  L  *  I  F  F  G  T  S  R  K  H  P  C  E  I  W  T  N  F  E  H  *  E  H  S  Q  F  L  F  R  S  L  E  K  F  N  I  N  S  K  P  D  S  W  K  A  F  F  C  W  F  L  F  G  S  S  G  E  V  N  N  K  I  W  S  S  P  S  I  *  *  I  R  H  E  V  V  E  I  P  *  S  F  R  *  P  K  W  K  R  L  K  F  K  T  C  S  T  D  L  W  T  A  *  R  L  H  D  G  W  E  W  F  S  C  K  *  L  P  S  R  S  T  R  I  S  F  R  F  S  K  C  N  E  R  S  W  C  R  W  T  C  *  W  L  F  N  L  L  L  S  N  K  L  *  C  E  K  K  A  V  K  C  S  S  R  N  S  R  G  C  C  L  S  T  A  L  C  K  C  H  Y  R  D  *  E  T  S  G  I  S  S  L  D  R  T  *  C  K  R  R  P  V  Q  H  A  T  G  *  F  K  S  S  P  Q  G  E  I  K  T  I  C  *  E  L  D  V  I  R  L  *  H  S  S  C  W  R  M  E  *  S  N  A  G  D  T  R  M  A  C  S  S  C  S  *  Y  D  K  M  A  V  R  A  E  F  R  A  S  E  L  C  F  Q  N  K  C  A  A  S  T  N  P  L  L  C  K  S  R  K  D  R  I  S  N  H  R  A  A  R  W  F  E  L  H  M  E  V  W  Q  G  S  E  C  *  S  D  R  G  M  C  *  C  *  N  D  V  *  *  *  L  L  G  *  L  T  N  I  L  I  F  S  Q  *  F  W  A  *  M  F  W  S  *  G  T  V  P  R  Q  N  A  S  L  Q  K  Q  S  T  S  L  L  C  Q  V  F  S  T  V  A  D  S  S  Y  S  D  S  M  R  F  L  I  R  Q  K  G  D  E  Y  C  R  N  V  T  H  L  K  L  L  N  I  L  S  G  Q  *  A  M  T  I  F  L  F  C  Q  Q  N  L  G  S  H  L  M  N  R  S  P  R  Y  K  F  Y  I  L  L  F  C  *  M  Y  R  I  S  *  D  C  F  F  *  L  C  I  F  T  *  Q  R  L  S  F  S  I  *  D  N  E  R  F  G  A  V  V  C  S  *  *  T  F  G  V  S  L  Q  Y  Y  E  A  R  N  L  R  I  S  K  A  T  F  L  A </second_frame>
            <third_frame>   E  V  I  C  W  W  I  *  V  *  D  R  S  *  I  Y  P  L  I  L  E  M  V  A  E  S  W  F  R  N  F  W  K  N  S  K  K  H  E  G  G  G  H  Q  K  V  L  V  G  V  L  A  F  E  V  A  S  L  M  S  K  L  V  H  V  W  Q  S  L  S  D  K  Q  V  A  R  L  R  D  E  I  M  N  S  V  G  I  K  K  L  I  S  D  D  D  S  Y  T  A  R  L  I  C  T  E  L  V  E  N  L  G  H  V  A  T  A  V  S  R  L  A  K  K  C  N  D  P  F  L  K  S  F  E  Q  A  F  N  D  L  L  K  V  G  A  D  P  Y  G  W  Q  L  S  W  K  K  M  D  K  K  I  K  K  M  E  R  F  I  V  I  N  A  N  L  Y  Q  E  M  E  N  L  S  D  L  E  Q  T  L  R  R  L  K  G  N  D  D  A  D  S  I  T  L  V  E  Y  E  K  K  L  A  W  K  K  Q  E  V  K  H  L  K  D  V  S  I  W  N  R  T  Y  D  Y  I  V  R  L  L  A  R  S  L  F  S  I  F  S  R  I  G  H  V  F  G  V  D  P  V  V  D  E  R  A  K  A  S  R  D  L  D  S  D  Q  I  H  R  S  Y  S  V  A  Y  A  Q  S  S  V  H  P  S  E  S  S  L  S  R  F  S  S  E  P  V  E  S  I  L  A  K  S  G  P  I  S  S  T  R  N  I  H  S  S  Y  S  G  P  L  K  S  S  T  S  T  A  S  P  I  P  G  R  H  S  S  A  G  F  Y  S  G  P  L  G  R  S  T  T  K  S  G  P  L  P  L  F  N  K  S  G  M  K  W  W  K  S  R  D  R  S  G  N  L  N  G  K  G  S  N  L  K  H  A  R  P  T  S  G  P  L  K  G  C  M  M  V  G  N  G  S  P  V  S  N  C  H  L  D  P  H  G  F  H  S  G  F  L  N  A  T  K  G  A  G  V  D  G  L  A  D  G  Y  S  T  C  S  Y  L  T  S  Y  N  A  K  K  R  L  L  N  A  P  P  E  T  L  G  A  A  A  L  A  L  H  Y  A  N  V  I  I  V  T  E  K  L  V  A  S  P  H  L  I  G  H  D  A  R  E  D  L  Y  N  M  L  P  A  S  L  R  A  A  L  R  A  K  L  K  P  F  A  K  S  L  T  S  S  V  Y  D  T  V  L  A  G  E  W  N  E  A  M  L  G  I  L  E  W  L  A  P  L  A  H  N  M  I  R  W  Q  S  E  R  S  F  E  H  Q  N  F  V  S  R  T  N  V  L  L  V  Q  T  L  Y  Y  A  N  Q  E  K  T  E  S  A  I  T  E  L  L  V  G  L  N  Y  I  W  R  Y  G  R  E  V  N  A  K  A  I  E  E  C  A  S  A  R  M  M  F  N  D  D  Y  L  D  D  *  Q  T  F  *  S  L  V  S  D  F  G  L  E  C  F  G  V  E  E  L  F  H  G  K  M  P  L  F  R  S  K  A  R  V  F  S  A  K  F  F  Q  L  L  L  I  Q  A  T  Q  I  P  *  D  S  L  F  V  K  R  V  T  N  T  A  E  M  *  H  T  *  S  F  *  T  F  F  Q  V  S  K  P  *  P  F  S  Y  F  A  S  R  T  W  D  H  I  *  *  I  G  V  H  A  I  N  S  I  S  C  Y  F  V  K  C  I  E  L  A  E  I  V  F  S  S  F  V  Y  L  H  N  K  G  F  L  L  A  Y  K  I  M  K  G  L  V  Q  *  F  V  L  D  E  L  L  E  Y  L  C  N  T  M  K  Q  E  I  *  E  L  V  K  P  H  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25985" stop="27817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1830</number_coding_nucleotides>
                  <number_encoded_amino_acids>610</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYPLILEMVAESWFRNFWKNSKKHEGGGHQKVLVGVLAFEVASLMSKLVHVWQSLSDKQVARLRDEIMNSVGIKKLISDDDSYTARLICTELVENLGHVATAVSRLAKKCNDPFLKSFEQAFNDLLKVGADPYGWQLSWKKMDKKIKKMERFIVINANLYQEMENLSDLEQTLRRLKGNDDADSITLVEYEKKLAWKKQEVKHLKDVSIWNRTYDYIVRLLARSLFSIFSRIGHVFGVDPVVDERAKASRDLDSDQIHRSYSVAYAQSSVHPSESSLSRFSSEPVESILAKSGPISSTRNIHSSYSGPLKSSTSTASPIPGRHSSAGFYSGPLGRSTTKSGPLPLFNKSGMKWWKSRDRSGNLNGKGSNLKHARPTSGPLKGCMMVGNGSPVSNCHLDPHGFHSGFLNATKGAGVDGLADGYSTCSYLTSYNAKKRLLNAPPETLGAAALALHYANVIIVTEKLVASPHLIGHDAREDLYNMLPASLRAALRAKLKPFAKSLTSSVYDTVLAGEWNEAMLGILEWLAPLAHNMIRWQSERSFEHQNFVSRTNVLLVQTLYYANQEKTESAITELLVGLNYIWRYGREVNAKAIEECASARMMFNDDYLDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28308" PGL_stop="27664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28308" e_stop="27664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="28308" e_stop="27664" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28308" stop="27664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTTCTTGCTTCATAGTATTGCAAAGATACTCCAAAAGTTCATCAAGAACAAACTACTGCACCAAACCTTTCATTATCTTATATGCTAAAAGAAAGCCTTTGTTATGTAAATATACAAAGCTAGAAAAAACAATCTCAGCTAATTCTATACATTTAACAAAATAACAAGATATAGAATTTATAGCGTGGACTCCGATTCATCAAATGTGATCCCAAGTTCTGCTGGCAAAATAGGAAAATGGTCATGGCTTACTGACCTGAAAGAATGTTCAGAAGCTTTAAGTGTGTTACATTTCTGCAGTATTCGTCACCCTTTTGACGAATAAGGAATCTCATGGAATCTGAGTAGCTTGAATCAGCAACAGTTGAAAAAACTTGGCAGAGAAGACTCGTGCTTTGCTTCTGAAGAGAGGCATTTTGCCGTGGAACAGTTCCTCAACTCCAAAACATTCAAGCCCAAAATCACTGACTAAAGATCAAAATGTTTGTCAGTCATCCAAGTAATCATCATTAAACATCATTCTAGCACTAGCACATTCCTCTATCGCTTTAGCATTCACTTCCCTGCCATACCTCCATATGTAGTTCAAACCAACGAGCAGCTCTGTGATTGCTGATTCTGTCTTTTCTTGATTTGCATAA</gDNA_template>
            <first_frame> Q  I  S  C  F  I  V  L  Q  R  Y  S  K  S  S  S  R  T  N  Y  C  T  K  P  F  I  I  L  Y  A  K  R  K  P  L  L  C  K  Y  T  K  L  E  K  T  I  S  A  N  S  I  H  L  T  K  *  Q  D  I  E  F  I  A  W  T  P  I  H  Q  M  *  S  Q  V  L  L  A  K  *  E  N  G  H  G  L  L  T  *  K  N  V  Q  K  L  *  V  C  Y  I  S  A  V  F  V  T  L  L  T  N  K  E  S  H  G  I  *  V  A  *  I  S  N  S  *  K  N  L  A  E  K  T  R  A  L  L  L  K  R  G  I  L  P  W  N  S  S  S  T  P  K  H  S  S  P  K  S  L  T  K  D  Q  N  V  C  Q  S  S  K  *  S  S  L  N  I  I  L  A  L  A  H  S  S  I  A  L  A  F  T  S  L  P  Y  L  H  M  *  F  K  P  T  S  S  S  V  I  A  D  S  V  F  S  *  F  A  * </first_frame>
            <second_frame>  K  F  L  A  S  *  Y  C  K  D  T  P  K  V  H  Q  E  Q  T  T  A  P  N  L  S  L  S  Y  M  L  K  E  S  L  C  Y  V  N  I  Q  S  *  K  K  Q  S  Q  L  I  L  Y  I  *  Q  N  N  K  I  *  N  L  *  R  G  L  R  F  I  K  C  D  P  K  F  C  W  Q  N  R  K  M  V  M  A  Y  *  P  E  R  M  F  R  S  F  K  C  V  T  F  L  Q  Y  S  S  P  F  *  R  I  R  N  L  M  E  S  E  *  L  E  S  A  T  V  E  K  T  W  Q  R  R  L  V  L  C  F  *  R  E  A  F  C  R  G  T  V  P  Q  L  Q  N  I  Q  A  Q  N  H  *  L  K  I  K  M  F  V  S  H  P  S  N  H  H  *  T  S  F  *  H  *  H  I  P  L  S  L  *  H  S  L  P  C  H  T  S  I  C  S  S  N  Q  R  A  A  L  *  L  L  I  L  S  F  L  D  L  H   </second_frame>
            <third_frame>   N  F  L  L  H  S  I  A  K  I  L  Q  K  F  I  K  N  K  L  L  H  Q  T  F  H  Y  L  I  C  *  K  K  A  F  V  M  *  I  Y  K  A  R  K  N  N  L  S  *  F  Y  T  F  N  K  I  T  R  Y  R  I  Y  S  V  D  S  D  S  S  N  V  I  P  S  S  A  G  K  I  G  K  W  S  W  L  T  D  L  K  E  C  S  E  A  L  S  V  L  H  F  C  S  I  R  H  P  F  D  E  *  G  I  S  W  N  L  S  S  L  N  Q  Q  Q  L  K  K  L  G  R  E  D  S  C  F  A  S  E  E  R  H  F  A  V  E  Q  F  L  N  S  K  T  F  K  P  K  I  T  D  *  R  S  K  C  L  S  V  I  Q  V  I  I  I  K  H  H  S  S  T  S  T  F  L  Y  R  F  S  I  H  F  P  A  I  P  P  Y  V  V  Q  T  N  E  Q  L  C  D  C  *  F  C  L  F  L  I  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0143O06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39006" PGL_stop="49137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39006" e_stop="39169"/>
            <exon e_start="39323" e_stop="39391"/>
            <exon e_start="41137" e_stop="41211"/>
            <exon e_start="42052" e_stop="42123"/>
            <exon e_start="42414" e_stop="42483"/>
            <exon e_start="42576" e_stop="42625"/>
            <exon e_start="47085" e_stop="47374"/>
            <exon e_start="47469" e_stop="47542"/>
            <exon e_start="47619" e_stop="47682"/>
            <exon e_start="47831" e_stop="47890"/>
            <exon e_start="48193" e_stop="48292"/>
            <exon e_start="48656" e_stop="48769"/>
            <exon e_start="48998" e_stop="49137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.909" acc_prob="0.985" e_score="0.990"/>
          <exon-intron don_prob="0.939" acc_prob="1.000" e_score="0.982"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="39006" e_stop="39169" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39170" i_stop="39322" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39323" e_stop="39391" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.958">
            <gDNA_intron_boundary i_start="39392" i_stop="41136" i_length="1745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41137" e_stop="41211" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41212" i_stop="42051" i_length="840"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42052" e_stop="42123" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.705" acc_prob="0.981">
            <gDNA_intron_boundary i_start="42124" i_stop="42413" i_length="290"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42414" e_stop="42483" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42484" i_stop="42575" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42576" e_stop="42625" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42626" i_stop="47084" i_length="4459"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47085" e_stop="47374" e_length="290"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47375" i_stop="47468" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47469" e_stop="47542" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.963">
            <gDNA_intron_boundary i_start="47543" i_stop="47618" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="47619" e_stop="47682" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47683" i_stop="47830" i_length="148"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="47831" e_stop="47890" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47891" i_stop="48192" i_length="302"/>
          </intron>
          <exon e_serial="11" e_score="0.990">
            <gDNA_exon_boundary e_start="48193" e_stop="48292" e_length="100"/>
          </exon>
          <intron i_serial="11" don_prob="0.909" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48293" i_stop="48655" i_length="363"/>
          </intron>
          <exon e_serial="12" e_score="0.982">
            <gDNA_exon_boundary e_start="48656" e_stop="48769" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.939" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48770" i_stop="48997" i_length="228"/>
          </intron>
          <exon e_serial="13" e_score="0.971">
            <gDNA_exon_boundary e_start="48998" e_stop="49137" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39006" stop="39169"/>
              <exon start="39323" stop="39391"/>
              <exon start="41137" stop="41211"/>
              <exon start="42052" stop="42123"/>
              <exon start="42414" stop="42483"/>
              <exon start="42576" stop="42625"/>
              <exon start="47085" stop="47278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39061" stop="39169"/>
              <exon start="39323" stop="39391"/>
              <exon start="41137" stop="41211"/>
              <exon start="42052" stop="42123"/>
              <exon start="42414" stop="42451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="47374"/>
              <exon start="47469" stop="47542"/>
              <exon start="47619" stop="47682"/>
              <exon start="47831" stop="47890"/>
              <exon start="48193" stop="48292"/>
              <exon start="48656" stop="48769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="47374"/>
              <exon start="47469" stop="47542"/>
              <exon start="47619" stop="47682"/>
              <exon start="47831" stop="47890"/>
              <exon start="48193" stop="48292"/>
              <exon start="48656" stop="48689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47201" stop="47374"/>
              <exon start="47469" stop="47542"/>
              <exon start="47619" stop="47682"/>
              <exon start="47831" stop="47890"/>
              <exon start="48193" stop="48292"/>
              <exon start="48656" stop="48769"/>
              <exon start="48998" stop="49137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47201" stop="47374"/>
              <exon start="47469" stop="47542"/>
              <exon start="47619" stop="47682"/>
              <exon start="47831" stop="47890"/>
              <exon start="48193" stop="48292"/>
              <exon start="48656" stop="48749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCACAACCACCACCACCGTTCTCGAGTCGCCGCCACCGCCATGTATCGGAGTCGGTCGGCGCGATCCTCATCACTCAGGGAGCCGGAGAGTCGACTCTCTGAGTCCGACAAAATTGAAGGTGCCGGTAGCTGGGATGCCCTTGAATGGACCAAAATCGAT : CCTGTTGCGAGGTCGATTCCTATTGGAGTTAAACAGTTTTTGTTGGAAGCCGAGCAAGTTATAGTAGAG : GGTTATGGGGTAGTTCTTGTCAACACTGATGATGCTGGAACCTTATACGTGACTAATTTTCGCCTCCTATTCTTG : AGTGAAGGGTCTAGAGATATCATCACAATTGGCACAATACCGTTGGCAACCATTGAAAAGTTCCAGAAAATT : GCTGTGAAGCTTCCATCAGGTCCACGTCAACCTGAAAAGACTAGATCACAGCGATTGCTTCAGATCATCG : GCAAAGATATGAGAATCATCGTGTTTGGTTTTCGTGCTCGAACCAAGCAG : AGGCGTGCTGTCTATGATGCATTATTACGGTGTACAAGGCCTGCAACTTTATGGGATCTCTATGCATTTGCTGGTGGTCCATCCAGGTTTAGCAACACAAATCCCAAAGTAAGGCTGTTGAATGAGTATTGCCGACTTCTTGGAATGGGGTTTTATCAAGCTTCTATCCGTGCTATTGAAGATGGGGCATTTACACTTTCAAATGAGTGGTGGCGTATTAGCAGTGTCAACTGTAATTACACAATGTCCAGTACTTATCCATTTGCTTTACTCTTACCGAAGTCCATAAG : TGATGACAAAGTGGTGCAGGCTAGTGCATTCCGTGCACGGAGTAGGCTTCCATCCATAACATGGTGTGATAGAG : GAACTGGGGCTGTTCTTGCACGATCTTCTCAACCTCTAGTTGGAATCATGATGAATATGAGAAG : CAATGCTGATGAAAATCTAGTTGCTGCACTCTGTACTCAAATTGCTGGACAGAAACGAAG : GAAGCTATATATTGCTGATGCAAGGCCGAGGAAAAATGCTTTAGCAAATGGGGCAATGGGAGGTGGATCGGAGTCATCTGCAAACTATTTCCAGTCGGAG : ATTGTTTTCTTTGGCATTGATAATATACATGCAATGAGGGAGAGTCTTGGTCGGCTTAGAGACTATGTAGATACTTATGGAACTACTTCATCAGACGGAATGTCATCTTATCTG : AGGCATGGTGGATGGAGTTGGGGCGGAGGCAATCTCAGCAGTATGTCAGCTTCAGTTTCTACTCTGGGGGACACTGGGTGGTTAATACATGTGCAGACTGTCCTGGCTGGTTCTGCTTGGATTGCTGCACGTGTTGCACT</gDNA_template>
            <first_frame> K  F  T  T  T  T  T  V  L  E  S  P  P  P  P  C  I  G  V  G  R  R  D  P  H  H  S  G  S  R  R  V  D  S  L  S  P  T  K  L  K  V  P  V  A  G  M  P  L  N  G  P  K  S  I :   L  L  R  G  R  F  L  L  E  L  N  S  F  C  W  K  P  S  K  L  *  *  R :   V  M  G  *  F  L  S  T  L  M  M  L  E  P  Y  T  *  L  I  F  A  S  Y  S  * :   V  K  G  L  E  I  S  S  Q  L  A  Q  Y  R  W  Q  P  L  K  S  S  R  K  L :   L  *  S  F  H  Q  V  H  V  N  L  K  R  L  D  H  S  D  C  F  R  S  S  :  A  K  I  *  E  S  S  C  L  V  F  V  L  E  P  S  R :   G  V  L  S  M  M  H  Y  Y  G  V  Q  G  L  Q  L  Y  G  I  S  M  H  L  L  V  V  H  P  G  L  A  T  Q  I  P  K  *  G  C  *  M  S  I  A  D  F  L  E  W  G  F  I  K  L  L  S  V  L  L  K  M  G  H  L  H  F  Q  M  S  G  G  V  L  A  V  S  T  V  I  T  Q  C  P  V  L  I  H  L  L  Y  S  Y  R  S  P  *   : V  M  T  K  W  C  R  L  V  H  S  V  H  G  V  G  F  H  P  *  H  G  V  I  E  :  E  L  G  L  F  L  H  D  L  L  N  L  *  L  E  S  *  *  I  *  E   : A  M  L  M  K  I  *  L  L  H  S  V  L  K  L  L  D  R  N  E   : G  S  Y  I  L  L  M  Q  G  R  G  K  M  L  *  Q  M  G  Q  W  E  V  D  R  S  H  L  Q  T  I  S  S  R  R :   L  F  S  L  A  L  I  I  Y  M  Q  *  G  R  V  L  V  G  L  E  T  M  *  I  L  M  E  L  L  H  Q  T  E  C  H  L  I  * :   G  M  V  D  G  V  G  A  E  A  I  S  A  V  C  Q  L  Q  F  L  L  W  G  T  L  G  G  *  Y  M  C  R  L  S  W  L  V  L  L  G  L  L  H  V  L  H  </first_frame>
            <second_frame>  N  S  Q  P  P  P  P  F  S  S  R  R  H  R  H  V  S  E  S  V  G  A  I  L  I  T  Q  G  A  G  E  S  T  L  *  V  R  Q  N  *  R  C  R  *  L  G  C  P  *  M  D  Q  N  R   : S  C  C  E  V  D  S  Y  W  S  *  T  V  F  V  G  S  R  A  S  Y  S  R   : G  L  W  G  S  S  C  Q  H  *  *  C  W  N  L  I  R  D  *  F  S  P  P  I  L   : E  *  R  V  *  R  Y  H  H  N  W  H  N  T  V  G  N  H  *  K  V  P  E  N   : C  C  E  A  S  I  R  S  T  S  T  *  K  D  *  I  T  A  I  A  S  D  H  R :   Q  R  Y  E  N  H  R  V  W  F  S  C  S  N  Q  A   : E  A  C  C  L  *  C  I  I  T  V  Y  K  A  C  N  F  M  G  S  L  C  I  C  W  W  S  I  Q  V  *  Q  H  K  S  Q  S  K  A  V  E  *  V  L  P  T  S  W  N  G  V  L  S  S  F  Y  P  C  Y  *  R  W  G  I  Y  T  F  K  *  V  V  A  Y  *  Q  C  Q  L  *  L  H  N  V  Q  Y  L  S  I  C  F  T  L  T  E  V  H  K  :  *  *  Q  S  G  A  G  *  C  I  P  C  T  E  *  A  S  I  H  N  M  V  *  *  R :   N  W  G  C  S  C  T  I  F  S  T  S  S  W  N  H  D  E  Y  E  K  :  Q  C  *  *  K  S  S  C  C  T  L  Y  S  N  C  W  T  E  T  K  :  E  A  I  Y  C  *  C  K  A  E  E  K  C  F  S  K  W  G  N  G  R  W  I  G  V  I  C  K  L  F  P  V  G   : D  C  F  L  W  H  *  *  Y  T  C  N  E  G  E  S  W  S  A  *  R  L  C  R  Y  L  W  N  Y  F  I  R  R  N  V  I  L  S   : E  A  W  W  M  E  L  G  R  R  Q  S  Q  Q  Y  V  S  F  S  F  Y  S  G  G  H  W  V  V  N  T  C  A  D  C  P  G  W  F  C  L  D  C  C  T  C  C  T </second_frame>
            <third_frame>   I  H  N  H  H  H  R  S  R  V  A  A  T  A  M  Y  R  S  R  S  A  R  S  S  S  L  R  E  P  E  S  R  L  S  E  S  D  K  I  E  G  A  G  S  W  D  A  L  E  W  T  K  I  D  :  P  V  A  R  S  I  P  I  G  V  K  Q  F  L  L  E  A  E  Q  V  I  V  E  :  G  Y  G  V  V  L  V  N  T  D  D  A  G  T  L  Y  V  T  N  F  R  L  L  F  L  :  S  E  G  S  R  D  I  I  T  I  G  T  I  P  L  A  T  I  E  K  F  Q  K  I  :  A  V  K  L  P  S  G  P  R  Q  P  E  K  T  R  S  Q  R  L  L  Q  I  I   : G  K  D  M  R  I  I  V  F  G  F  R  A  R  T  K  Q  :  R  R  A  V  Y  D  A  L  L  R  C  T  R  P  A  T  L  W  D  L  Y  A  F  A  G  G  P  S  R  F  S  N  T  N  P  K  V  R  L  L  N  E  Y  C  R  L  L  G  M  G  F  Y  Q  A  S  I  R  A  I  E  D  G  A  F  T  L  S  N  E  W  W  R  I  S  S  V  N  C  N  Y  T  M  S  S  T  Y  P  F  A  L  L  L  P  K  S  I  S :   D  D  K  V  V  Q  A  S  A  F  R  A  R  S  R  L  P  S  I  T  W  C  D  R   : G  T  G  A  V  L  A  R  S  S  Q  P  L  V  G  I  M  M  N  M  R  S :   N  A  D  E  N  L  V  A  A  L  C  T  Q  I  A  G  Q  K  R  R :   K  L  Y  I  A  D  A  R  P  R  K  N  A  L  A  N  G  A  M  G  G  G  S  E  S  S  A  N  Y  F  Q  S  E  :  I  V  F  F  G  I  D  N  I  H  A  M  R  E  S  L  G  R  L  R  D  Y  V  D  T  Y  G  T  T  S  S  D  G  M  S  S  Y  L  :  R  H  G  G  W  S  W  G  G  G  N  L  S  S  M  S  A  S  V  S  T  L  G  D  T  G  W  L  I  H  V  Q  T  V  L  A  G  S  A  W  I  A  A  R  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39008" stop="39169"/>
                    <exon start="39323" stop="39391"/>
                    <exon start="41137" stop="41211"/>
                    <exon start="42052" stop="42123"/>
                    <exon start="42414" stop="42483"/>
                    <exon start="42576" stop="42625"/>
                    <exon start="47085" stop="47374"/>
                    <exon start="47469" stop="47542"/>
                    <exon start="47619" stop="47682"/>
                    <exon start="47831" stop="47890"/>
                    <exon start="48193" stop="48292"/>
                    <exon start="48656" stop="48769"/>
                    <exon start="48998" stop="49135"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1338</number_coding_nucleotides>
                  <number_encoded_amino_acids>446</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHNHHHRSRVAATAMYRSRSARSSSLREPESRLSESDKIEGAGSWDALEWTKIDPVARSIPIGVKQFLLEAEQVIVEGYGVVLVNTDDAGTLYVTNFRLLFLSEGSRDIITIGTIPLATIEKFQKIAVKLPSGPRQPEKTRSQRLLQIIGKDMRIIVFGFRARTKQRRAVYDALLRCTRPATLWDLYAFAGGPSRFSNTNPKVRLLNEYCRLLGMGFYQASIRAIEDGAFTLSNEWWRISSVNCNYTMSSTYPFALLLPKSISDDKVVQASAFRARSRLPSITWCDRGTGAVLARSSQPLVGIMMNMRSNADENLVAALCTQIAGQKRRKLYIADARPRKNALANGAMGGGSESSANYFQSEIVFFGIDNIHAMRESLGRLRDYVDTYGTTSSDGMSSYLRHGGWSWGGGNLSSMSASVSTLGDTGWLIHVQTVLAGSAWIAARVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49218" PGL_stop="49733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49218" e_stop="49733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49218" e_stop="49733" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49218" stop="49733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTAAATGGAGAACATTAGTCCCTTCTATTCATGTTTCTGTTGATTCCTCTTTGGATATTTTATCAGTAATATTCTTATTAGTTGGGACTACGTTTTAGTCATGGTACTACGTTAACTTTAGGTTTTATGTTTTCTAAGAGCCTCTTAGTCCTATTTAGCAGAGACCTCCCCCAGGTTTTTGCTCCATCACACTGACGTCCCTTGTGATATACAATACTACACTTATTTGTTTTAATTTCTCTATAACATTTCTTTTAACTTATATATTATTAATTTATAAAAATTGTGATATGACTAACTTGCCATTTGTAATATATGCTGTTTTGCTTAATTAATATTATAAATGTACTTCTGTGAAATAAAAAGCAATACACTAGCTCTCTTGCAATGGCATTGATGATCTCATAAGAGCTATAGAAATAGGGAGCTGCTGATCACTCGTTCATAGGTTAATCAAGGGTTAAGTTGGTTGTTTTATAGCAGAACTTTTTATGTGATTATCATGTATAATATG</gDNA_template>
            <first_frame> V  *  M  E  N  I  S  P  F  Y  S  C  F  C  *  F  L  F  G  Y  F  I  S  N  I  L  I  S  W  D  Y  V  L  V  M  V  L  R  *  L  *  V  L  C  F  L  R  A  S  *  S  Y  L  A  E  T  S  P  R  F  L  L  H  H  T  D  V  P  C  D  I  Q  Y  Y  T  Y  L  F  *  F  L  Y  N  I  S  F  N  L  Y  I  I  N  L  *  K  L  *  Y  D  *  L  A  I  C  N  I  C  C  F  A  *  L  I  L  *  M  Y  F  C  E  I  K  S  N  T  L  A  L  L  Q  W  H  *  *  S  H  K  S  Y  R  N  R  E  L  L  I  T  R  S  *  V  N  Q  G  L  S  W  L  F  Y  S  R  T  F  Y  V  I  I  M  Y  N  M </first_frame>
            <second_frame>  S  K  W  R  T  L  V  P  S  I  H  V  S  V  D  S  S  L  D  I  L  S  V  I  F  L  L  V  G  T  T  F  *  S  W  Y  Y  V  N  F  R  F  Y  V  F  *  E  P  L  S  P  I  *  Q  R  P  P  P  G  F  C  S  I  T  L  T  S  L  V  I  Y  N  T  T  L  I  C  F  N  F  S  I  T  F  L  L  T  Y  I  L  L  I  Y  K  N  C  D  M  T  N  L  P  F  V  I  Y  A  V  L  L  N  *  Y  Y  K  C  T  S  V  K  *  K  A  I  H  *  L  S  C  N  G  I  D  D  L  I  R  A  I  E  I  G  S  C  *  S  L  V  H  R  L  I  K  G  *  V  G  C  F  I  A  E  L  F  M  *  L  S  C  I  I   </second_frame>
            <third_frame>   L  N  G  E  H  *  S  L  L  F  M  F  L  L  I  P  L  W  I  F  Y  Q  *  Y  S  Y  *  L  G  L  R  F  S  H  G  T  T  L  T  L  G  F  M  F  S  K  S  L  L  V  L  F  S  R  D  L  P  Q  V  F  A  P  S  H  *  R  P  L  *  Y  T  I  L  H  L  F  V  L  I  S  L  *  H  F  F  *  L  I  Y  Y  *  F  I  K  I  V  I  *  L  T  C  H  L  *  Y  M  L  F  C  L  I  N  I  I  N  V  L  L  *  N  K  K  Q  Y  T  S  S  L  A  M  A  L  M  I  S  *  E  L  *  K  *  G  A  A  D  H  S  F  I  G  *  S  R  V  K  L  V  V  L  *  Q  N  F  L  C  D  Y  H  V  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0143O06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51269" PGL_stop="53920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51269" e_stop="51284"/>
            <exon e_start="51457" e_stop="51516"/>
            <exon e_start="51639" e_stop="51703"/>
            <exon e_start="52296" e_stop="52575"/>
            <exon e_start="53070" e_stop="53920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.871" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51269" e_stop="51284" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51285" i_stop="51456" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="51457" e_stop="51516" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51517" i_stop="51638" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51639" e_stop="51703" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51704" i_stop="52295" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52296" e_stop="52575" e_length="280"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.871">
            <gDNA_intron_boundary i_start="52576" i_stop="53069" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53070" e_stop="53920" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51269" stop="51284"/>
              <exon start="51457" stop="51516"/>
              <exon start="51639" stop="51703"/>
              <exon start="52296" stop="52575"/>
              <exon start="53070" stop="53250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51646" stop="51703"/>
              <exon start="52296" stop="52575"/>
              <exon start="53070" stop="53615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51648" stop="51703"/>
              <exon start="52296" stop="52575"/>
              <exon start="53070" stop="53245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52340" stop="52575"/>
              <exon start="53070" stop="53697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52340" stop="52575"/>
              <exon start="53070" stop="53697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52352" stop="52575"/>
              <exon start="53070" stop="53551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52352" stop="52575"/>
              <exon start="53070" stop="53227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53138" stop="53659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53191" stop="53920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCATTTTTTTGCAG : TGGGTTGATTGTGTTTCGCAGTTGTTGAGGATGTATCCCTTTGCCTTTGAGTTCTCTTCG : GCTTTCCTGGTAGATCTTCTGGATTGCATGCTTTCTTGTCGTTTTGGGAACTTTTTGTGCAACAG : CGAGAAGGAAAGAGAGCAAGCTGGTATATATGATGCTTGTGGATGCCTGTGGATGTATTTAGCTGGACTAAGGACATCTGAAGGAAGCTCTCATGCGCATTACAACCTATTCTATGACCCACTGAAACATAATGGTCCTATACTTCCACCAGCAGCAGCTTTAGCTCCAACTGTGTGGCCTCAGTTTCACCTTCGTTGGGCTTGCCCCTCAGAGGCGCAAGGTGGGGAAGTTGAAGCTGAATGCAGGAAGCTGACGAGAAAATTCTCTGAGCTGCAAAGG : GCCAAAGAACTAGCAGAAACAAGACTTAACGAAGCAAGTGTCTCCGTGGAGTCCTTAGTTACAGAACTGAGAAATGAGAAACTTGCAAGCACCTCTGCCAGGGATGCGGTAAAAAGAGCAAGCAAAGAAACTGCTACTATAAAGCGTGCAGTACAATCTTTGGGGTTCAATGTCTACTTTACAGCAGATGGAGACTGTAATGTAGGCATTGAAAGGAACCCAACCGAAATCCCTCAGCGATCTATCTGCTCAGTTTTTACAAAAGATATTAATGGCACAGTGTCCCACAGTGAGAAAGCAGACCTCTCTGAACCTGTTTCTGTGGCAGAAGATAATGTTTCCGACAATCCTCTCATCCGAGTTTGTGGATCTCTATGCCCGAAGCACACTAGAGATGGAGAGTGTCAGTTGCCAAATGCTGGTTGTGCTCAGTTTCAGAGCCAATTGGTTGATTTCAAAGCCAACTTTGATGCATTTGATCGGCTTTCGATATATGATAGTTATTTCGGAAGTTAAGAAAGATGGTTTCAGCTAAGCATCAAGCTCAGTTTATGTGATCAGATATCTTTGTACAGTTGGGAATTAAATGGAGGCGGCAGTAGGTTCAGTTTCTATTATTAGCAAAAATCACAGCAAACAATTAGACAGAAGTAGCAGTAGTGAGTACAACCAGCTTTGAAACATAGTTTCTGTTAGATTGAGATGGCTCAAGAACTGTACATGGAGAACTGATTTGAGTTTCTATGCGGATCATCTGAAAGTTTTGACATCGCGGAGGATTGAGAAGATTTGAACTGATATTATTTAGATACAATTCATATGTACATTTTGACATAGGCGTTCCTCCTCCG</gDNA_template>
            <first_frame> P  H  F  F  A   : V  G  *  L  C  F  A  V  V  E  D  V  S  L  C  L  *  V  L  F   : G  F  P  G  R  S  S  G  L  H  A  F  L  S  F  W  E  L  F  V  Q  Q  :  R  E  G  K  R  A  S  W  Y  I  *  C  L  W  M  P  V  D  V  F  S  W  T  K  D  I  *  R  K  L  S  C  A  L  Q  P  I  L  *  P  T  E  T  *  W  S  Y  T  S  T  S  S  S  F  S  S  N  C  V  A  S  V  S  P  S  L  G  L  P  L  R  G  A  R  W  G  S  *  S  *  M  Q  E  A  D  E  K  I  L  *  A  A  K   : G  Q  R  T  S  R  N  K  T  *  R  S  K  C  L  R  G  V  L  S  Y  R  T  E  K  *  E  T  C  K  H  L  C  Q  G  C  G  K  K  S  K  Q  R  N  C  Y  Y  K  A  C  S  T  I  F  G  V  Q  C  L  L  Y  S  R  W  R  L  *  C  R  H  *  K  E  P  N  R  N  P  S  A  I  Y  L  L  S  F  Y  K  R  Y  *  W  H  S  V  P  Q  *  E  S  R  P  L  *  T  C  F  C  G  R  R  *  C  F  R  Q  S  S  H  P  S  L  W  I  S  M  P  E  A  H  *  R  W  R  V  S  V  A  K  C  W  L  C  S  V  S  E  P  I  G  *  F  Q  S  Q  L  *  C  I  *  S  A  F  D  I  *  *  L  F  R  K  L  R  K  M  V  S  A  K  H  Q  A  Q  F  M  *  S  D  I  F  V  Q  L  G  I  K  W  R  R  Q  *  V  Q  F  L  L  L  A  K  I  T  A  N  N  *  T  E  V  A  V  V  S  T  T  S  F  E  T  *  F  L  L  D  *  D  G  S  R  T  V  H  G  E  L  I  *  V  S  M  R  I  I  *  K  F  *  H  R  G  G  L  R  R  F  E  L  I  L  F  R  Y  N  S  Y  V  H  F  D  I  G  V  P  P  P </first_frame>
            <second_frame>  P  I  F  L  Q  :  W  V  D  C  V  S  Q  L  L  R  M  Y  P  F  A  F  E  F  S  S  :  A  F  L  V  D  L  L  D  C  M  L  S  C  R  F  G  N  F  L  C  N  S :   E  K  E  R  E  Q  A  G  I  Y  D  A  C  G  C  L  W  M  Y  L  A  G  L  R  T  S  E  G  S  S  H  A  H  Y  N  L  F  Y  D  P  L  K  H  N  G  P  I  L  P  P  A  A  A  L  A  P  T  V  W  P  Q  F  H  L  R  W  A  C  P  S  E  A  Q  G  G  E  V  E  A  E  C  R  K  L  T  R  K  F  S  E  L  Q  R  :  A  K  E  L  A  E  T  R  L  N  E  A  S  V  S  V  E  S  L  V  T  E  L  R  N  E  K  L  A  S  T  S  A  R  D  A  V  K  R  A  S  K  E  T  A  T  I  K  R  A  V  Q  S  L  G  F  N  V  Y  F  T  A  D  G  D  C  N  V  G  I  E  R  N  P  T  E  I  P  Q  R  S  I  C  S  V  F  T  K  D  I  N  G  T  V  S  H  S  E  K  A  D  L  S  E  P  V  S  V  A  E  D  N  V  S  D  N  P  L  I  R  V  C  G  S  L  C  P  K  H  T  R  D  G  E  C  Q  L  P  N  A  G  C  A  Q  F  Q  S  Q  L  V  D  F  K  A  N  F  D  A  F  D  R  L  S  I  Y  D  S  Y  F  G  S  *  E  R  W  F  Q  L  S  I  K  L  S  L  C  D  Q  I  S  L  Y  S  W  E  L  N  G  G  G  S  R  F  S  F  Y  Y  *  Q  K  S  Q  Q  T  I  R  Q  K  *  Q  *  *  V  Q  P  A  L  K  H  S  F  C  *  I  E  M  A  Q  E  L  Y  M  E  N  *  F  E  F  L  C  G  S  S  E  S  F  D  I  A  E  D  *  E  D  L  N  *  Y  Y  L  D  T  I  H  M  Y  I  L  T  *  A  F  L  L   </second_frame>
            <third_frame>   P  F  F  C  S :   G  L  I  V  F  R  S  C  *  G  C  I  P  L  P  L  S  S  L  R :   L  S  W  *  I  F  W  I  A  C  F  L  V  V  L  G  T  F  C  A  T   : A  R  R  K  E  S  K  L  V  Y  M  M  L  V  D  A  C  G  C  I  *  L  D  *  G  H  L  K  E  A  L  M  R  I  T  T  Y  S  M  T  H  *  N  I  M  V  L  Y  F  H  Q  Q  Q  L  *  L  Q  L  C  G  L  S  F  T  F  V  G  L  A  P  Q  R  R  K  V  G  K  L  K  L  N  A  G  S  *  R  E  N  S  L  S  C  K  G :   P  K  N  *  Q  K  Q  D  L  T  K  Q  V  S  P  W  S  P  *  L  Q  N  *  E  M  R  N  L  Q  A  P  L  P  G  M  R  *  K  E  Q  A  K  K  L  L  L  *  S  V  Q  Y  N  L  W  G  S  M  S  T  L  Q  Q  M  E  T  V  M  *  A  L  K  G  T  Q  P  K  S  L  S  D  L  S  A  Q  F  L  Q  K  I  L  M  A  Q  C  P  T  V  R  K  Q  T  S  L  N  L  F  L  W  Q  K  I  M  F  P  T  I  L  S  S  E  F  V  D  L  Y  A  R  S  T  L  E  M  E  S  V  S  C  Q  M  L  V  V  L  S  F  R  A  N  W  L  I  S  K  P  T  L  M  H  L  I  G  F  R  Y  M  I  V  I  S  E  V  K  K  D  G  F  S  *  A  S  S  S  V  Y  V  I  R  Y  L  C  T  V  G  N  *  M  E  A  A  V  G  S  V  S  I  I  S  K  N  H  S  K  Q  L  D  R  S  S  S  S  E  Y  N  Q  L  *  N  I  V  S  V  R  L  R  W  L  K  N  C  T  W  R  T  D  L  S  F  Y  A  D  H  L  K  V  L  T  S  R  R  I  E  K  I  *  T  D  I  I  *  I  Q  F  I  C  T  F  *  H  R  R  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51270" stop="51284"/>
                    <exon start="51457" stop="51516"/>
                    <exon start="51639" stop="51703"/>
                    <exon start="52296" stop="52575"/>
                    <exon start="53070" stop="53585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNSEKEREQAGIYDACGCLWMYLAGLRTSEGSSHAHYNLFYDPLKHNGPILPPAAALAPTVWPQFHLRWACPSEAQGGEVEAECRKLTRKFSELQRAKELAETRLNEASVSVESLVTELRNEKLASTSARDAVKRASKETATIKRAVQSLGFNVYFTADGDCNVGIERNPTEIPQRSICSVFTKDINGTVSHSEKADLSEPVSVAEDNVSDNPLIRVCGSLCPKHTRDGECQLPNAGCAQFQSQLVDFKANFDAFDRLSIYDSYFGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58180" PGL_stop="54918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58180" e_stop="57846"/>
            <exon e_start="55352" e_stop="54918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58180" e_stop="57846" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="55352" e_stop="54918" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58180" stop="57846"/>
              <exon start="55352" stop="55064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58179" stop="57846"/>
              <exon start="55352" stop="55267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58179" stop="57846"/>
              <exon start="55352" stop="55267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58176" stop="57846"/>
              <exon start="55352" stop="55069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58173" stop="57846"/>
              <exon start="55352" stop="55064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58171" stop="57846"/>
              <exon start="55352" stop="54968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58171" stop="57846"/>
              <exon start="55352" stop="55064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58171" stop="57846"/>
              <exon start="55352" stop="55077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58171" stop="57846"/>
              <exon start="55352" stop="55077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="57846"/>
              <exon start="55352" stop="55064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="57846"/>
              <exon start="55352" stop="55175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="57846"/>
              <exon start="55352" stop="55199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58168" stop="57846"/>
              <exon start="55352" stop="54987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58168" stop="57846"/>
              <exon start="55352" stop="55115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58163" stop="57846"/>
              <exon start="55352" stop="55163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58145" stop="57846"/>
              <exon start="55352" stop="54926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58145" stop="57846"/>
              <exon start="55352" stop="55075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58107" stop="57846"/>
              <exon start="55352" stop="54968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58008" stop="57846"/>
              <exon start="55352" stop="54918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG : GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAGTTCTTTTTAAATGAAAAGATAGTGCTCTTGAGTACATGATATTTGGAGA</gDNA_template>
            <first_frame> Q  S  Q  K  P  P  K  T  *  L  W  R  T  P  Q  Q  Q  Q  Q  S  P  V  T  L  L  R  L  P  M  T  R  K  T  I  P  R  T  H  L  H  H  L  S  L  V  F  F  S  F  S  N  R  R  R  H  L  V  R  R  L  N  P  P  L  L  L  Q  T  S  N  Q  L  L  Q  L  K  K  R  R  K  L  L  *  *  S  F  R  D  R  I  C  L  R  *  S  S  K  Q  K  G  L  N  L  I  Q  I  P  L  S  C  G  R :   F  M  L  S  E  G  S  L  S  *  G  G  H  G  Q  D  G  T  S  V  V  E  T  G  S  H  P  M  K  S  L  L  P  V  K  S  R  L  C  T  A  T  C  *  K  R  E  N  K  E  *  H  L  W  R  Q  V  Y  D  F  I  *  V  L  *  S  V  E  I  T  V  L  V  L  Q  Y  *  M  *  K  P  E  S  S  F  T  S  I  C  Q  S  A  S  F  C  T  A  C  V  S  A  L  V  D  N  S  C  *  S  K  W  M  R  A  *  A  I  L  *  A  H  I  F  H  S  T  *  *  V  L  F  K  *  K  D  S  A  L  E  Y  M  I  F  G   </first_frame>
            <second_frame>  K  V  K  N  L  Q  K  L  S  Y  G  G  H  H  N  N  N  N  N  L  R  *  L  Y  Y  G  Y  R  *  P  E  K  Q  S  H  E  P  T  C  I  I  Y  L  *  C  S  S  A  F  Q  T  A  A  G  I  *  *  E  D  *  T  H  R  C  Y  F  R  P  Q  T  N  C  F  S  *  K  R  G  E  S  C  C  S  E  V  S  A  T  G  F  A  F  V  E  A  R  N  R  R  G  *  T  *  Y  K  S  H  C  L  V  A   : G  L  C  Y  R  R  V  L  C  L  K  V  G  M  V  K  M  E  R  A  S  W  K  Q  E  A  I  R  *  R  A  S  S  Q  S  R  V  D  F  V  L  Q  H  V  R  K  E  K  T  K  N  D  T  C  G  D  R  F  M  T  L  F  E  S  C  K  V  L  K  S  Q  F  W  F  Y  S  T  K  C  K  N  P  N  Q  A  L  R  Q  F  A  S  Q  H  H  F  V  Q  P  V  F  Q  P  L  L  I  I  L  A  K  A  S  G  C  V  H  E  L  Y  C  K  L  I  Y  F  I  Q  L  D  K  F  F  L  N  E  K  I  V  L  L  S  T  *  Y  L  E  </second_frame>
            <third_frame>   K  S  K  T  S  K  N  L  A  M  A  D  T  T  T  T  T  T  I  S  G  D  S  I  T  V  T  D  D  Q  K  N  N  P  T  N  P  L  A  S  F  I  S  S  V  L  Q  L  F  K  P  P  P  A  S  S  K  K  I  E  P  T  A  A  T  S  D  L  K  P  I  A  S  A  E  K  E  E  K  A  A  V  V  K  F  P  R  Q  D  L  P  S  L  K  L  E  T  E  G  A  E  P  N  T  N  P  I  V  L  W  Q  :  V  Y  A  I  G  G  F  F  V  L  R  W  A  W  S  R  W  N  E  R  R  G  N  R  K  P  S  D  E  E  P  P  P  S  Q  E  *  T  L  Y  C  N  M  L  E  K  R  K  Q  R  M  T  L  V  E  T  G  L  *  L  Y  L  S  L  V  K  C  *  N  H  S  S  G  F  T  V  L  N  V  K  T  R  I  K  L  Y  V  N  L  P  V  S  I  I  L  Y  S  L  C  F  S  P  C  *  *  F  L  L  K  Q  V  D  A  C  M  S  Y  T  V  S  S  Y  I  S  F  N  L  I  S  S  F  *  M  K  R  *  C  S  *  V  H  D  I  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58178" stop="57846"/>
                    <exon start="55352" stop="55242"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKTSKNLAMADTTTTTTISGDSITVTDDQKNNPTNPLASFISSVLQLFKPPPASSKKIEPTAATSDLKPIASAEKEEKAAVVKFPRQDLPSLKLETEGAEPNTNPIVLWQVYAIGGFFVLRWAWSRWNERRGNRKPSDEEPPPSQE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55266" stop="54928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASSQSRVDFVLQHVRKEKTKNDTCGDRFMTLFESCKVLKSQFWFYSTKCKNPNQALRQFASQHHFVQPVFQPLLIILAKASGCVHELYCKLIYFIQLDKFFLNEKIVLLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="67402" PGL_stop="73138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67402" e_stop="67647"/>
            <exon e_start="68228" e_stop="68324"/>
            <exon e_start="69269" e_stop="69366"/>
            <exon e_start="69474" e_stop="69629"/>
            <exon e_start="70145" e_stop="70222"/>
            <exon e_start="70604" e_stop="70735"/>
            <exon e_start="71022" e_stop="71102"/>
            <exon e_start="71254" e_stop="71325"/>
            <exon e_start="71414" e_stop="71503"/>
            <exon e_start="73051" e_stop="73138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.986" e_score="0.931"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.237" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="67402" e_stop="67647" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68228" e_stop="68324" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69269" e_stop="69366" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69474" e_stop="69629" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69630" i_stop="70144" i_length="515"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70145" e_stop="70222" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.237" acc_prob="0.914">
            <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70604" e_stop="70735" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.976">
            <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71022" e_stop="71102" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71254" e_stop="71325" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71326" i_stop="71413" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="71414" e_stop="71503" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="71504" i_stop="73050" i_length="1547"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73051" e_stop="73138" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67402" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67453" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67454" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67490" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67508" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71325"/>
              <exon start="71414" stop="71432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67508" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67527" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67528" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67533" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67534" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67539" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67541" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67558" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67565" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68249" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68249" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70145" stop="70222"/>
              <exon start="70604" stop="70705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71325"/>
              <exon start="71414" stop="71503"/>
              <exon start="73051" stop="73138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATAAACCGAAAAGTTATTTAAAATATAAATTATTTCCCGGCCTCACTCACCAAATGCATTTATGCTACAATATTTTTACTATTTAAAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCT : ACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG : TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG : GTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG : TCAGTGAAGAAAGGAGACACTATTTTCATTGGTCAGTACTTGTTCACGGGAAGTGAGACTACCTCTGTGTGGCTAGAG : GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAG : GTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACAT : GCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAG : GGAATGGGCAACTTTGATGAGATTCTCGAAGAAGCTGATGGCATCATTCTCTCTCGTGGAAATTTAGGGATAGATCTACCACCTGAGAAG : GTGTTCCTATTTCAAAAGGCAGCTGTTCACAGGTGCAATATGGCTGGTAAACCTGCTGTGGTCACTCGTGTTGTGGACAGTATGACTG</gDNA_template>
            <first_frame> W  I  N  R  K  V  I  *  N  I  N  Y  F  P  A  S  L  T  K  C  I  Y  A  T  I  F  L  L  F  K  A  V  L  L  S  P  L  F  Y  Y  F  S  L  N  *  A  H  S  P  Q  F  Q  *  R  S  A  T  G  K  M  H  S  T  N  L  L  L  E  E  P  I  R  M  A  S  I  L  E  P  S  K  P  :  T  F  F  P  A  M  T  K  I  V  G  T  L  G  P  K  S  R  S  V  E  I  I  S  S  C  L  E  S  G  M  S   : V  A  R  F  D  F  S  W  G  D  A  E  F  H  Q  E  T  L  E  N  L  R  A  A  V  K  K  S  K  K  L  C  A  :  V  M  L  D  T  G  G  P  E  L  Q  V  V  N  K  S  E  H  P  I  S  L  Q  A  D  S  L  V  V  L  T  P  D  Q  D  K  E  A  T  P  N  L  L  P  I  N  F  S  G  L  S  K  :  S  V  K  K  G  D  T  I  F  I  G  Q  Y  L  F  T  G  S  E  T  T  S  V  W  L  E  :  V  T  E  V  K  G  E  D  V  V  C  L  I  K  N  S  A  T  L  A  G  P  L  Y  T  L  H  V  S  Q  I  R  I  E  L  P  T  L  T  D  K  D  K  K  :  V  I  S  T  W  A  F  R  N  K  I  D  I  L  S  L  S  Y  T  R  N  A  E  D  V  R  H  :  A  R  E  F  L  S  K  L  G  D  L  D  Q  T  Q  I  F  A  K  I  E  N  V  E  :  G  M  G  N  F  D  E  I  L  E  E  A  D  G  I  I  L  S  R  G  N  L  G  I  D  L  P  P  E  K  :  V  F  L  F  Q  K  A  A  V  H  R  C  N  M  A  G  K  P  A  V  V  T  R  V  V  D  S  M  T  </first_frame>
            <second_frame>  G  *  T  E  K  L  F  K  I  *  I  I  S  R  P  H  S  P  N  A  F  M  L  Q  Y  F  Y  Y  L  K  Q  F  C  Y  L  H  Y  S  T  I  F  L  *  T  E  L  T  H  R  S  F  S  D  D  R  L  P  E  K  C  T  R  R  T  C  F  S  K  N  R  F  E  W  L  R  F  S  S  H  Q  S  L :   R  F  F  Q  Q  *  R  R  L  L  A  R  W  V  Q  N  H  V  R  W  R  L  S  L  V  A  L  N  R  E  C  L  :  W  H  D  L  T  F  H  G  E  M  P  N  F  T  K  R  H  W  K  I  *  G  Q  P  S  K  N  Q  R  S  S  V  R :   L  C  *  T  L  V  V  L  N  Y  K  L  S  I  R  A  N  T  Q  F  H  S  K  Q  I  P  *  L  S  *  H  L  I  K  I  K  R  L  H  Q  I  Y  C  Q  *  I  L  V  A  Y  Q  S :   Q  *  R  K  E  T  L  F  S  L  V  S  T  C  S  R  E  V  R  L  P  L  C  G  *  R :   *  Q  R  *  K  E  R  M  S  F  A  *  L  K  I  L  P  P  W  P  D  H  C  T  H  Y  M  S  P  R  S  V  L  S  C  Q  L  *  R  T  K  I  R  R :   L  *  A  L  G  P  F  E  T  K  *  I  S  F  H  C  H  I  H  E  M  L  K  M  F  D  M :   L  V  N  F  Y  L  S  W  V  I  L  I  K  H  R  F  L  L  R  *  K  M  W  R :   E  W  A  T  L  M  R  F  S  K  K  L  M  A  S  F  S  L  V  E  I  *  G  *  I  Y  H  L  R  R :   C  S  Y  F  K  R  Q  L  F  T  G  A  I  W  L  V  N  L  L  W  S  L  V  L  W  T  V  *  L </second_frame>
            <third_frame>   D  K  P  K  S  Y  L  K  Y  K  L  F  P  G  L  T  H  Q  M  H  L  C  Y  N  I  F  T  I  *  S  S  F  A  I  S  I  I  L  L  F  F  S  E  L  S  S  L  T  A  V  S  V  T  I  G  Y  R  K  N  A  L  D  E  L  A  S  R  R  T  D  S  N  G  F  D  S  R  A  I  K  A   : Y  V  F  S  S  N  D  E  D  C  W  H  A  G  S  K  I  T  F  G  G  D  Y  L  *  L  P  *  I  G  N  V  C :   G  T  I  *  L  F  M  G  R  C  R  I  S  P  R  D  I  G  K  S  K  G  S  R  Q  K  I  K  E  A  L  C   : G  Y  A  R  H  W  W  S  *  T  T  S  C  Q  *  E  R  T  P  N  F  T  P  S  R  F  L  S  C  P  D  T  *  S  R  *  R  G  Y  T  K  S  T  A  N  K  F  *  W  P  I  K   : V  S  E  E  R  R  H  Y  F  H  W  S  V  L  V  H  G  K  *  D  Y  L  C  V  A  R   : G  N  R  G  E  R  R  G  C  R  L  L  D  *  K  F  C  H  L  G  R  T  I  V  H  I  T  C  L  P  D  P  Y  *  V  A  N  S  D  G  Q  R  *  E   : G  Y  K  H  L  G  L  S  K  Q  N  R  Y  P  F  T  V  I  Y  T  K  C  *  R  C  S  T   : C  S  *  I  S  I  *  A  G  *  S  *  S  N  T  D  F  C  *  D  R  K  C  G   : G  N  G  Q  L  *  *  D  S  R  R  S  *  W  H  H  S  L  S  W  K  F  R  D  R  S  T  T  *  E   : G  V  P  I  S  K  G  S  C  S  Q  V  Q  Y  G  W  *  T  C  C  G  H  S  C  C  G  Q  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67561" stop="67647"/>
                    <exon start="68228" stop="68324"/>
                    <exon start="69269" stop="69366"/>
                    <exon start="69474" stop="69629"/>
                    <exon start="70145" stop="70222"/>
                    <exon start="70604" stop="70735"/>
                    <exon start="71022" stop="71102"/>
                    <exon start="71254" stop="71325"/>
                    <exon start="71414" stop="71503"/>
                    <exon start="73051" stop="73137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSATGKMHSTNLLLEEPIRMASILEPSKPTFFPAMTKIVGTLGPKSRSVEIISSCLESGMSVARFDFSWGDAEFHQETLENLRAAVKKSKKLCAVMLDTGGPELQVVNKSEHPISLQADSLVVLTPDQDKEATPNLLPINFSGLSKSVKKGDTIFIGQYLFTGSETTSVWLEVTEVKGEDVVCLIKNSATLAGPLYTLHVSQIRIELPTLTDKDKKVISTWAFRNKIDILSLSYTRNAEDVRHAREFLSKLGDLDQTQIFAKIENVEGMGNFDEILEEADGIILSRGNLGIDLPPEKVFLFQKAAVHRCNMAGKPAVVTRVVDSMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67402" e_stop="67647"/>
            <exon e_start="68228" e_stop="68324"/>
            <exon e_start="69269" e_stop="69366"/>
            <exon e_start="69474" e_stop="69629"/>
            <exon e_start="70194" e_stop="70222"/>
            <exon e_start="70604" e_stop="70735"/>
            <exon e_start="71022" e_stop="71102"/>
            <exon e_start="71254" e_stop="71325"/>
            <exon e_start="71414" e_stop="71503"/>
            <exon e_start="73051" e_stop="73138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.986" e_score="0.931"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="0.948"/>
          <exon-intron don_prob="0.831" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.237" acc_prob="0.914" e_score="0.931"/>
          <exon-intron don_prob="0.984" acc_prob="0.976" e_score="0.990"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="0.951"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.891" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="67402" e_stop="67647" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67648" i_stop="68227" i_length="580"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="68228" e_stop="68324" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="68325" i_stop="69268" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="69269" e_stop="69366" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69367" i_stop="69473" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="69474" e_stop="69629" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69630" i_stop="70193" i_length="564"/>
          </intron>
          <exon e_serial="5" e_score="0.931">
            <gDNA_exon_boundary e_start="70194" e_stop="70222" e_length="29"/>
          </exon>
          <intron i_serial="5" don_prob="0.237" acc_prob="0.914">
            <gDNA_intron_boundary i_start="70223" i_stop="70603" i_length="381"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="70604" e_stop="70735" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.976">
            <gDNA_intron_boundary i_start="70736" i_stop="71021" i_length="286"/>
          </intron>
          <exon e_serial="7" e_score="0.951">
            <gDNA_exon_boundary e_start="71022" e_stop="71102" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71103" i_stop="71253" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="71254" e_stop="71325" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71326" i_stop="71413" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="71414" e_stop="71503" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.891">
            <gDNA_intron_boundary i_start="71504" i_stop="73050" i_length="1547"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73051" e_stop="73138" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67402" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67533" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67558" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67573" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70194" stop="70222"/>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71325"/>
              <exon start="71414" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67573" stop="67647"/>
              <exon start="68228" stop="68324"/>
              <exon start="69269" stop="69366"/>
              <exon start="69474" stop="69629"/>
              <exon start="70194" stop="70222"/>
              <exon start="70604" stop="70705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71325"/>
              <exon start="71414" stop="71503"/>
              <exon start="73051" stop="73138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70604" stop="70735"/>
              <exon start="71022" stop="71102"/>
              <exon start="71254" stop="71287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATAAACCGAAAAGTTATTTAAAATATAAATTATTTCCCGGCCTCACTCACCAAATGCATTTATGCTACAATATTTTTACTATTTAAAGCAGTTTTGCTATCTCCATTATTCTACTATTTTTCTCTGAACTGAGCTCACTCACCGCAGTTTCAGTGACGATCGGCTACCGGAAAAATGCACTCGACGAACTTGCTTCTCGAAGAACCGATTCGAATGGCTTCGATTCTCGAGCCATCAAAGCCT : ACGTTTTTTCCAGCAATGACGAAGATTGTTGGCACGCTGGGTCCAAAATCACGTTCGGTGGAGATTATCTCTAGTTGCCTTGAATCGGGAATGTCTG : TGGCACGATTTGACTTTTCATGGGGAGATGCCGAATTTCACCAAGAGACATTGGAAAATCTAAGGGCAGCCGTCAAAAAATCAAAGAAGCTCTGTGCG : GTTATGCTAGACACTGGTGGTCCTGAACTACAAGTTGTCAATAAGAGCGAACACCCAATTTCACTCCAAGCAGATTCCTTAGTTGTCCTGACACCTGATCAAGATAAAGAGGCTACACCAAATCTACTGCCAATAAATTTTAGTGGCCTATCAAAG : GAAGTGAGACTACCTCTGTGTGGCTAGAG : GTAACAGAGGTGAAAGGAGAGGATGTCGTTTGCTTGATTAAAAATTCTGCCACCTTGGCCGGACCATTGTACACATTACATGTCTCCCAGATCCGTATTGAGTTGCCAACTCTGACGGACAAAGATAAGAAG : GTTATAAGCACTTGGGCCTTTCGAAACAAAATAGATATCCTTTCACTGTCATATACACGAAATGCTGAAGATGTTCGACAT : GCTCGTGAATTTCTATCTAAGCTGGGTGATCTTGATCAAACACAGATTTTTGCTAAGATAGAAAATGTGGAG : GGAATGGGCAACTTTGATGAGATTCTCGAAGAAGCTGATGGCATCATTCTCTCTCGTGGAAATTTAGGGATAGATCTACCACCTGAGAAG : GTGTTCCTATTTCAAAAGGCAGCTGTTCACAGGTGCAATATGGCTGGTAAACCTGCTGTGGTCACTCGTGTTGTGGACAGTATGACTG</gDNA_template>
            <first_frame> W  I  N  R  K  V  I  *  N  I  N  Y  F  P  A  S  L  T  K  C  I  Y  A  T  I  F  L  L  F  K  A  V  L  L  S  P  L  F  Y  Y  F  S  L  N  *  A  H  S  P  Q  F  Q  *  R  S  A  T  G  K  M  H  S  T  N  L  L  L  E  E  P  I  R  M  A  S  I  L  E  P  S  K  P  :  T  F  F  P  A  M  T  K  I  V  G  T  L  G  P  K  S  R  S  V  E  I  I  S  S  C  L  E  S  G  M  S   : V  A  R  F  D  F  S  W  G  D  A  E  F  H  Q  E  T  L  E  N  L  R  A  A  V  K  K  S  K  K  L  C  A  :  V  M  L  D  T  G  G  P  E  L  Q  V  V  N  K  S  E  H  P  I  S  L  Q  A  D  S  L  V  V  L  T  P  D  Q  D  K  E  A  T  P  N  L  L  P  I  N  F  S  G  L  S  K  :  E  V  R  L  P  L  C  G  *  R :   *  Q  R  *  K  E  R  M  S  F  A  *  L  K  I  L  P  P  W  P  D  H  C  T  H  Y  M  S  P  R  S  V  L  S  C  Q  L  *  R  T  K  I  R  R :   L  *  A  L  G  P  F  E  T  K  *  I  S  F  H  C  H  I  H  E  M  L  K  M  F  D  M :   L  V  N  F  Y  L  S  W  V  I  L  I  K  H  R  F  L  L  R  *  K  M  W  R :   E  W  A  T  L  M  R  F  S  K  K  L  M  A  S  F  S  L  V  E  I  *  G  *  I  Y  H  L  R  R :   C  S  Y  F  K  R  Q  L  F  T  G  A  I  W  L  V  N  L  L  W  S  L  V  L  W  T  V  *  L </first_frame>
            <second_frame>  G  *  T  E  K  L  F  K  I  *  I  I  S  R  P  H  S  P  N  A  F  M  L  Q  Y  F  Y  Y  L  K  Q  F  C  Y  L  H  Y  S  T  I  F  L  *  T  E  L  T  H  R  S  F  S  D  D  R  L  P  E  K  C  T  R  R  T  C  F  S  K  N  R  F  E  W  L  R  F  S  S  H  Q  S  L :   R  F  F  Q  Q  *  R  R  L  L  A  R  W  V  Q  N  H  V  R  W  R  L  S  L  V  A  L  N  R  E  C  L  :  W  H  D  L  T  F  H  G  E  M  P  N  F  T  K  R  H  W  K  I  *  G  Q  P  S  K  N  Q  R  S  S  V  R :   L  C  *  T  L  V  V  L  N  Y  K  L  S  I  R  A  N  T  Q  F  H  S  K  Q  I  P  *  L  S  *  H  L  I  K  I  K  R  L  H  Q  I  Y  C  Q  *  I  L  V  A  Y  Q  R :   K  *  D  Y  L  C  V  A  R   : G  N  R  G  E  R  R  G  C  R  L  L  D  *  K  F  C  H  L  G  R  T  I  V  H  I  T  C  L  P  D  P  Y  *  V  A  N  S  D  G  Q  R  *  E   : G  Y  K  H  L  G  L  S  K  Q  N  R  Y  P  F  T  V  I  Y  T  K  C  *  R  C  S  T   : C  S  *  I  S  I  *  A  G  *  S  *  S  N  T  D  F  C  *  D  R  K  C  G   : G  N  G  Q  L  *  *  D  S  R  R  S  *  W  H  H  S  L  S  W  K  F  R  D  R  S  T  T  *  E   : G  V  P  I  S  K  G  S  C  S  Q  V  Q  Y  G  W  *  T  C  C  G  H  S  C  C  G  Q  Y  D   </second_frame>
            <third_frame>   D  K  P  K  S  Y  L  K  Y  K  L  F  P  G  L  T  H  Q  M  H  L  C  Y  N  I  F  T  I  *  S  S  F  A  I  S  I  I  L  L  F  F  S  E  L  S  S  L  T  A  V  S  V  T  I  G  Y  R  K  N  A  L  D  E  L  A  S  R  R  T  D  S  N  G  F  D  S  R  A  I  K  A   : Y  V  F  S  S  N  D  E  D  C  W  H  A  G  S  K  I  T  F  G  G  D  Y  L  *  L  P  *  I  G  N  V  C :   G  T  I  *  L  F  M  G  R  C  R  I  S  P  R  D  I  G  K  S  K  G  S  R  Q  K  I  K  E  A  L  C   : G  Y  A  R  H  W  W  S  *  T  T  S  C  Q  *  E  R  T  P  N  F  T  P  S  R  F  L  S  C  P  D  T  *  S  R  *  R  G  Y  T  K  S  T  A  N  K  F  *  W  P  I  K   : G  S  E  T  T  S  V  W  L  E  :  V  T  E  V  K  G  E  D  V  V  C  L  I  K  N  S  A  T  L  A  G  P  L  Y  T  L  H  V  S  Q  I  R  I  E  L  P  T  L  T  D  K  D  K  K  :  V  I  S  T  W  A  F  R  N  K  I  D  I  L  S  L  S  Y  T  R  N  A  E  D  V  R  H  :  A  R  E  F  L  S  K  L  G  D  L  D  Q  T  Q  I  F  A  K  I  E  N  V  E  :  G  M  G  N  F  D  E  I  L  E  E  A  D  G  I  I  L  S  R  G  N  L  G  I  D  L  P  P  E  K  :  V  F  L  F  Q  K  A  A  V  H  R  C  N  M  A  G  K  P  A  V  V  T  R  V  V  D  S  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69617" stop="69629"/>
                    <exon start="70194" stop="70222"/>
                    <exon start="70604" stop="70735"/>
                    <exon start="71022" stop="71102"/>
                    <exon start="71254" stop="71325"/>
                    <exon start="71414" stop="71503"/>
                    <exon start="73051" stop="73137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPIKGSETTSVWLEVTEVKGEDVVCLIKNSATLAGPLYTLHVSQIRIELPTLTDKDKKVISTWAFRNKIDILSLSYTRNAEDVRHAREFLSKLGDLDQTQIFAKIENVEGMGNFDEILEEADGIILSRGNLGIDLPPEKVFLFQKAAVHRCNMAGKPAVVTRVVDSMT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67561" stop="67647"/>
                    <exon start="68228" stop="68324"/>
                    <exon start="69269" stop="69366"/>
                    <exon start="69474" stop="69629"/>
                    <exon start="70194" stop="70220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSATGKMHSTNLLLEEPIRMASILEPSKPTFFPAMTKIVGTLGPKSRSVEIISSCLESGMSVARFDFSWGDAEFHQETLENLRAAVKKSKKLCAVMLDTGGPELQVVNKSEHPISLQADSLVVLTPDQDKEATPNLLPINFSGLSKEVRLPLCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73259" PGL_stop="77787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73259" e_stop="73445"/>
            <exon e_start="74582" e_stop="74677"/>
            <exon e_start="74795" e_stop="74862"/>
            <exon e_start="75039" e_stop="75138"/>
            <exon e_start="75736" e_stop="75795"/>
            <exon e_start="77087" e_stop="77437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.855"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73259" e_stop="73445" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73446" i_stop="74581" i_length="1136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74582" e_stop="74677" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.982">
            <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74795" e_stop="74862" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75039" e_stop="75138" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75736" e_stop="75795" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291"/>
          </intron>
          <exon e_serial="6" e_score="0.855">
            <gDNA_exon_boundary e_start="77087" e_stop="77437" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73259" stop="73445"/>
              <exon start="74582" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74641" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560143" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77123" stop="77351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77150" stop="77426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77227" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGGGAATATATGCTAAATACTTGTGGTAGGTATAAACGTGCCTTTTTTGTGCTTGTCTCCAAGATGCTTCATATCAATTTTCTTTCATCCCAGGTAGTGATGCAATTCTTCTAGGTGCAGAGACCCTGAGAGGTCTATATCCTGTTGAGACTATTTCCACTGTTGGTAAAATTTGTGCAGAG : GCAGAAAAGGTTTATAATCAAGATGTCTATTTTAAGAGGGCTGTTAAGTGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCG : GTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG : ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG : GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG : GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAA</gDNA_template>
            <first_frame> K  M  G  N  I  C  *  I  L  V  V  G  I  N  V  P  F  L  C  L  S  P  R  C  F  I  S  I  F  F  H  P  R  *  *  C  N  S  S  R  C  R  D  P  E  R  S  I  S  C  *  D  Y  F  H  C  W  *  N  L  C  R   : G  R  K  G  L  *  S  R  C  L  F  *  E  G  C  *  V  C  G  R  T  N  D  S  L  G  I  Y  C  F  L  S   : G  T  R  C  H  Q  G  Q  G  I  C  Y  Y  L  L  H  F  F  R  E  S  C  E  :  I  D  S  *  V  *  A  T  D  A  S  F  I  C  C  H  S  S  S  Q  D  K  P  T  A  L  D  I  Q  W  C  I  S   : G  *  A  V  S  Y  C  *  R  N  F  P  H  P  C  R  S  K  T  S   : G  *  V  R  K  C  N  *  *  V  D  I  E  G  C  T  R  P  W  E  N  S  W  C  Y  K  T  T  *  P  S  C  C  F  P  E  S  W  *  R  I  C  G  E  D  H  *  A  *  K  L  G  *  Y  I  F  V  C  F  T  Q  S  I  L  K  L  T  E  C  M  K  T  I  *  W  S  Y  K  T  R  L  I  H  G  C  N  N  C  S  G  P  M  *  I  L  C  K  *  C  L  P  L  *  V  V  R  L  L  S  F  K  T  L  S  S  L  T  </first_frame>
            <second_frame>  K  W  G  I  Y  A  K  Y  L  W  *  V  *  T  C  L  F  C  A  C  L  Q  D  A  S  Y  Q  F  S  F  I  P  G  S  D  A  I  L  L  G  A  E  T  L  R  G  L  Y  P  V  E  T  I  S  T  V  G  K  I  C  A  E  :  A  E  K  V  Y  N  Q  D  V  Y  F  K  R  A  V  K  C  V  G  E  P  M  T  H  L  E  S  I  A  S  S  A  :  V  R  A  A  I  K  V  K  A  S  V  I  I  C  F  T  S  S  G  R  A  A  R :   L  I  A  K  Y  R  P  P  M  P  V  L  S  V  V  I  P  R  L  K  T  N  Q  L  R  W  T  F  S  G  A  F  Q  :  A  R  Q  S  L  I  V  R  G  I  F  P  I  L  A  D  P  R  H  P  :  A  E  S  A  N  A  T  D  E  S  I  L  K  V  A  L  D  H  G  K  T  A  G  V  I  K  P  H  D  R  V  V  V  F  Q  K  V  G  D  A  S  V  V  K  I  I  E  L  E  N  *  A  S  T  S  L  Y  V  S  L  R  A  F  S  S  *  Q  N  A  *  K  P  S  N  G  A  I  K  P  G  *  S  M  A  V  I  I  A  P  D  R  C  K  S  S  V  S  N  A  Y  H  F  K  L  *  D  Y  Y  L  L  R  R  C  H  L  *  Q </second_frame>
            <third_frame>   N  G  E  Y  M  L  N  T  C  G  R  Y  K  R  A  F  F  V  L  V  S  K  M  L  H  I  N  F  L  S  S  Q  V  V  M  Q  F  F  *  V  Q  R  P  *  E  V  Y  I  L  L  R  L  F  P  L  L  V  K  F  V  Q  R :   Q  K  R  F  I  I  K  M  S  I  L  R  G  L  L  S  V  W  E  N  Q  *  L  T  W  N  L  L  L  P  Q  R :   Y  A  L  P  S  R  S  R  H  L  L  L  S  A  S  L  L  Q  G  E  L  R   : D  *  *  L  S  I  G  H  R  C  Q  F  Y  L  L  S  F  L  V  S  R  Q  T  N  C  A  G  H  S  V  V  H  F  R :   L  G  S  L  L  L  L  E  E  F  S  P  S  L  Q  I  Q  D  I  R :   L  S  P  Q  M  Q  L  M  S  R  Y  *  R  L  H  *  T  M  G  K  Q  L  V  L  *  N  H  M  T  E  L  L  F  S  R  K  L  V  T  H  L  W  *  R  S  L  S  L  K  I  R  L  V  H  L  C  M  F  H  S  E  H  S  Q  V  N  R  M  H  E  N  H  L  M  E  L  *  N  Q  V  D  P  W  L  *  *  L  L  R  T  D  V  N  P  L  *  V  M  L  T  T  L  S  C  K  I  I  I  F  *  D  A  V  I  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73299" stop="73445"/>
                    <exon start="74582" stop="74677"/>
                    <exon start="74795" stop="74862"/>
                    <exon start="75039" stop="75138"/>
                    <exon start="75736" stop="75795"/>
                    <exon start="77087" stop="77239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCLFCACLQDASYQFSFIPGSDAILLGAETLRGLYPVETISTVGKICAEAEKVYNQDVYFKRAVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPPMPVLSVVIPRLKTNQLRWTFSGAFQARQSLIVRGIFPILADPRHPAESANATDESILKVALDHGKTAGVIKPHDRVVVFQKVGDASVVKIIELEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74969" e_stop="75138"/>
            <exon e_start="75736" e_stop="75795"/>
            <exon e_start="77087" e_stop="77426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="0.953"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="0.983"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="74969" e_stop="75138" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="75736" e_stop="75795" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="77087" e_stop="77426" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74969" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77123" stop="77351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77150" stop="77426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77227" stop="77397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCATGACATTCTGAAGTCTATCCTCTAGTGCAGAAAACTCAATTTATAAGCTTTTACTGATGATGCAGATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG : GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG : GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTTGTATGTTTCACTCAGAGCATTCTCAAGTTAACAGAATGCATGAAAACCATCTAATGGAGCTATAAAACCAGGTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTC</gDNA_template>
            <first_frame> C  H  D  I  L  K  S  I  L  *  C  R  K  L  N  L  *  A  F  T  D  D  A  D  *  *  L  S  I  G  H  R  C  Q  F  Y  L  L  S  F  L  V  S  R  Q  T  N  C  A  G  H  S  V  V  H  F  R :   L  G  S  L  L  L  L  E  E  F  S  P  S  L  Q  I  Q  D  I  R :   L  S  P  Q  M  Q  L  M  S  R  Y  *  R  L  H  *  T  M  G  K  Q  L  V  L  *  N  H  M  T  E  L  L  F  S  R  K  L  V  T  H  L  W  *  R  S  L  S  L  K  I  R  L  V  H  L  C  M  F  H  S  E  H  S  Q  V  N  R  M  H  E  N  H  L  M  E  L  *  N  Q  V  D  P  W  L  *  *  L  L  R  T  D  V  N  P  L  *  V  M  L  T  T  L  S  C  K  I  I  I  F  *  D  A  V </first_frame>
            <second_frame>  A  M  T  F  *  S  L  S  S  S  A  E  N  S  I  Y  K  L  L  L  M  M  Q  I  D  S  *  V  *  A  T  D  A  S  F  I  C  C  H  S  S  S  Q  D  K  P  T  A  L  D  I  Q  W  C  I  S   : G  *  A  V  S  Y  C  *  R  N  F  P  H  P  C  R  S  K  T  S   : G  *  V  R  K  C  N  *  *  V  D  I  E  G  C  T  R  P  W  E  N  S  W  C  Y  K  T  T  *  P  S  C  C  F  P  E  S  W  *  R  I  C  G  E  D  H  *  A  *  K  L  G  *  Y  I  F  V  C  F  T  Q  S  I  L  K  L  T  E  C  M  K  T  I  *  W  S  Y  K  T  R  L  I  H  G  C  N  N  C  S  G  P  M  *  I  L  C  K  *  C  L  P  L  *  V  V  R  L  L  S  F  K  T  L   </second_frame>
            <third_frame>   P  *  H  S  E  V  Y  P  L  V  Q  K  T  Q  F  I  S  F  Y  *  *  C  R  L  I  A  K  Y  R  P  P  M  P  V  L  S  V  V  I  P  R  L  K  T  N  Q  L  R  W  T  F  S  G  A  F  Q  :  A  R  Q  S  L  I  V  R  G  I  F  P  I  L  A  D  P  R  H  P  :  A  E  S  A  N  A  T  D  E  S  I  L  K  V  A  L  D  H  G  K  T  A  G  V  I  K  P  H  D  R  V  V  V  F  Q  K  V  G  D  A  S  V  V  K  I  I  E  L  E  N  *  A  S  T  S  L  Y  V  S  L  R  A  F  S  S  *  Q  N  A  *  K  P  S  N  G  A  I  K  P  G  *  S  M  A  V  I  I  A  P  D  R  C  K  S  S  V  S  N  A  Y  H  F  K  L  *  D  Y  Y  L  L  R  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75034" stop="75138"/>
                    <exon start="75736" stop="75795"/>
                    <exon start="77087" stop="77239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRLIAKYRPPMPVLSVVIPRLKTNQLRWTFSGAFQARQSLIVRGIFPILADPRHPAESANATDESILKVALDHGKTAGVIKPHDRVVVFQKVGDASVVKIIELEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73259" e_stop="73445"/>
            <exon e_start="74582" e_stop="74677"/>
            <exon e_start="74795" e_stop="74862"/>
            <exon e_start="75039" e_stop="75138"/>
            <exon e_start="75736" e_stop="75795"/>
            <exon e_start="77087" e_stop="77239"/>
            <exon e_start="77325" e_stop="77371"/>
            <exon e_start="77474" e_stop="77700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.716" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73259" e_stop="73445" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73446" i_stop="74581" i_length="1136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74582" e_stop="74677" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.982">
            <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74795" e_stop="74862" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75039" e_stop="75138" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75736" e_stop="75795" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77087" e_stop="77239" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77240" i_stop="77324" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77325" e_stop="77371" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.716">
            <gDNA_intron_boundary i_start="77372" i_stop="77473" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="0.978">
            <gDNA_exon_boundary e_start="77474" e_stop="77700" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73259" stop="73445"/>
              <exon start="74582" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75059" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77239"/>
              <exon start="77325" stop="77371"/>
              <exon start="77474" stop="77700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGGGAATATATGCTAAATACTTGTGGTAGGTATAAACGTGCCTTTTTTGTGCTTGTCTCCAAGATGCTTCATATCAATTTTCTTTCATCCCAGGTAGTGATGCAATTCTTCTAGGTGCAGAGACCCTGAGAGGTCTATATCCTGTTGAGACTATTTCCACTGTTGGTAAAATTTGTGCAGAG : GCAGAAAAGGTTTATAATCAAGATGTCTATTTTAAGAGGGCTGTTAAGTGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCG : GTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG : ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG : GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG : GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAG : GTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCT : GCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAGGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCAAGATTAATTCAAGAGTAAAC</gDNA_template>
            <first_frame> K  M  G  N  I  C  *  I  L  V  V  G  I  N  V  P  F  L  C  L  S  P  R  C  F  I  S  I  F  F  H  P  R  *  *  C  N  S  S  R  C  R  D  P  E  R  S  I  S  C  *  D  Y  F  H  C  W  *  N  L  C  R   : G  R  K  G  L  *  S  R  C  L  F  *  E  G  C  *  V  C  G  R  T  N  D  S  L  G  I  Y  C  F  L  S   : G  T  R  C  H  Q  G  Q  G  I  C  Y  Y  L  L  H  F  F  R  E  S  C  E  :  I  D  S  *  V  *  A  T  D  A  S  F  I  C  C  H  S  S  S  Q  D  K  P  T  A  L  D  I  Q  W  C  I  S   : G  *  A  V  S  Y  C  *  R  N  F  P  H  P  C  R  S  K  T  S   : G  *  V  R  K  C  N  *  *  V  D  I  E  G  C  T  R  P  W  E  N  S  W  C  Y  K  T  T  *  P  S  C  C  F  P  E  S  W  *  R  I  C  G  E  D  H  *  A  *  K  L   : G  *  S  M  A  V  I  I  A  P  D  R  C  K  S  S  :  A  V  K  G  V  N  L  L  C  F  T  I  F  V  Y  Q  I  V  L  Y  I  S  S  G  K  *  V  V  I  I  A  I  L  *  M  E  *  *  Y  I  R  T  F  F  S  *  *  *  Q  T  L  H  R  K  I  V  K  H  L  F  *  E  S  E  I  I  K  N  S  R  L  I  Q  E  *   </first_frame>
            <second_frame>  K  W  G  I  Y  A  K  Y  L  W  *  V  *  T  C  L  F  C  A  C  L  Q  D  A  S  Y  Q  F  S  F  I  P  G  S  D  A  I  L  L  G  A  E  T  L  R  G  L  Y  P  V  E  T  I  S  T  V  G  K  I  C  A  E  :  A  E  K  V  Y  N  Q  D  V  Y  F  K  R  A  V  K  C  V  G  E  P  M  T  H  L  E  S  I  A  S  S  A  :  V  R  A  A  I  K  V  K  A  S  V  I  I  C  F  T  S  S  G  R  A  A  R :   L  I  A  K  Y  R  P  P  M  P  V  L  S  V  V  I  P  R  L  K  T  N  Q  L  R  W  T  F  S  G  A  F  Q  :  A  R  Q  S  L  I  V  R  G  I  F  P  I  L  A  D  P  R  H  P  :  A  E  S  A  N  A  T  D  E  S  I  L  K  V  A  L  D  H  G  K  T  A  G  V  I  K  P  H  D  R  V  V  V  F  Q  K  V  G  D  A  S  V  V  K  I  I  E  L  E  N  *  :  V  D  P  W  L  *  *  L  L  R  T  D  V  N  P  L :   L  *  R  V  S  T  Y  F  A  S  L  F  L  C  I  K  *  Y  Y  I  Y  L  Q  V  N  K  *  L  *  L  L  S  Y  E  W  S  S  D  I  *  E  P  S  F  L  D  D  N  K  L  F  I  G  R  L  S  N  I  C  S  R  R  V  K  S  S  R  I  Q  D  *  F  K  S  K  </second_frame>
            <third_frame>   N  G  E  Y  M  L  N  T  C  G  R  Y  K  R  A  F  F  V  L  V  S  K  M  L  H  I  N  F  L  S  S  Q  V  V  M  Q  F  F  *  V  Q  R  P  *  E  V  Y  I  L  L  R  L  F  P  L  L  V  K  F  V  Q  R :   Q  K  R  F  I  I  K  M  S  I  L  R  G  L  L  S  V  W  E  N  Q  *  L  T  W  N  L  L  L  P  Q  R :   Y  A  L  P  S  R  S  R  H  L  L  L  S  A  S  L  L  Q  G  E  L  R   : D  *  *  L  S  I  G  H  R  C  Q  F  Y  L  L  S  F  L  V  S  R  Q  T  N  C  A  G  H  S  V  V  H  F  R :   L  G  S  L  L  L  L  E  E  F  S  P  S  L  Q  I  Q  D  I  R :   L  S  P  Q  M  Q  L  M  S  R  Y  *  R  L  H  *  T  M  G  K  Q  L  V  L  *  N  H  M  T  E  L  L  F  S  R  K  L  V  T  H  L  W  *  R  S  L  S  L  K  I  R :   L  I  H  G  C  N  N  C  S  G  P  M  *  I  L   : C  C  E  G  C  Q  P  T  L  L  H  Y  F  C  V  S  N  S  I  I  Y  I  F  R  *  I  S  S  Y  N  C  Y  L  M  N  G  V  V  I  Y  K  N  L  L  F  L  M  I  T  N  S  S  *  E  D  C  Q  T  F  V  L  G  E  *  N  H  Q  E  F  K  I  N  S  R  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73299" stop="73445"/>
                    <exon start="74582" stop="74677"/>
                    <exon start="74795" stop="74862"/>
                    <exon start="75039" stop="75138"/>
                    <exon start="75736" stop="75795"/>
                    <exon start="77087" stop="77239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCLFCACLQDASYQFSFIPGSDAILLGAETLRGLYPVETISTVGKICAEAEKVYNQDVYFKRAVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPPMPVLSVVIPRLKTNQLRWTFSGAFQARQSLIVRGIFPILADPRHPAESANATDESILKVALDHGKTAGVIKPHDRVVVFQKVGDASVVKIIELEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73259" e_stop="73445"/>
            <exon e_start="74582" e_stop="74677"/>
            <exon e_start="74795" e_stop="74862"/>
            <exon e_start="75039" e_stop="75138"/>
            <exon e_start="75736" e_stop="75795"/>
            <exon e_start="77087" e_stop="77253"/>
            <exon e_start="77325" e_stop="77787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.280" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73259" e_stop="73445" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.822">
            <gDNA_intron_boundary i_start="73446" i_stop="74581" i_length="1136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74582" e_stop="74677" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.982">
            <gDNA_intron_boundary i_start="74678" i_stop="74794" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74795" e_stop="74862" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74863" i_stop="75038" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75039" e_stop="75138" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75139" i_stop="75735" i_length="597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75736" e_stop="75795" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75796" i_stop="77086" i_length="1291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77087" e_stop="77253" e_length="167"/>
          </exon>
          <intron i_serial="6" don_prob="0.280" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77254" i_stop="77324" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="77325" e_stop="77787" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73259" stop="73445"/>
              <exon start="74582" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74677"/>
              <exon start="74795" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74839" stop="74862"/>
              <exon start="75039" stop="75138"/>
              <exon start="75736" stop="75795"/>
              <exon start="77087" stop="77253"/>
              <exon start="77325" stop="77787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGGGAATATATGCTAAATACTTGTGGTAGGTATAAACGTGCCTTTTTTGTGCTTGTCTCCAAGATGCTTCATATCAATTTTCTTTCATCCCAGGTAGTGATGCAATTCTTCTAGGTGCAGAGACCCTGAGAGGTCTATATCCTGTTGAGACTATTTCCACTGTTGGTAAAATTTGTGCAGAG : GCAGAAAAGGTTTATAATCAAGATGTCTATTTTAAGAGGGCTGTTAAGTGTGTGGGAGAACCAATGACTCACTTGGAATCTATTGCTTCCTCAGCG : GTACGCGCTGCCATCAAGGTCAAGGCATCTGTTATTATCTGCTTCACTTCTTCAGGGAGAGCTGCGAG : ATTGATAGCTAAGTATAGGCCACCGATGCCAGTTTTATCTGTTGTCATTCCTCGTCTCAAGACAAACCAACTGCGCTGGACATTCAGTGGTGCATTTCAG : GCTAGGCAGTCTCTTATTGTTAGAGGAATTTTCCCCATCCTTGCAGATCCAAGACATCCG : GCTGAGTCCGCAAATGCAACTGATGAGTCGATATTGAAGGTTGCACTAGACCATGGGAAAACAGCTGGTGTTATAAAACCACATGACCGAGTTGTTGTTTTCCAGAAAGTTGGTGACGCATCTGTGGTGAAGATCATTGAGCTTGAAAATTAGGCTAGTACATCTTT : GTTGATCCATGGCTGTAATAATTGCTCCGGACCGATGTAAATCCTCTGTAAGTAATGCTTACCACTTTAAGTTGTAAGATTATTATCTTTTAAGACGCTGTCATCTTTAACAAATCTCTTTTTTTTTCTCTAATCCATATGTTGTGTAGGCTGTGAAGGGTGTCAACCTACTTTGCTTCACTATTTTTGTGTATCAAATAGTATTATATATATCTTCAGGTAAATAAGTAGTTATAATTGCTATCTTATGAATGGAGTAGTGATATATAAGAACCTTCTTTTCTTGATGATAACAAACTCTTCATAGGAAGATTGTCAAACATTTGTTCTAGGAGAGTGAAATCATCAAGAATTCAAGATTAATTCAAGAGTAAACCTTCTATTAGTGAAGTCGTATACCTTTAGGGGTTGTTTGGTTGGAAACAAGTTATTCAGGATTAATTGTTTCGGATAAATTATTCCA</gDNA_template>
            <first_frame> K  M  G  N  I  C  *  I  L  V  V  G  I  N  V  P  F  L  C  L  S  P  R  C  F  I  S  I  F  F  H  P  R  *  *  C  N  S  S  R  C  R  D  P  E  R  S  I  S  C  *  D  Y  F  H  C  W  *  N  L  C  R   : G  R  K  G  L  *  S  R  C  L  F  *  E  G  C  *  V  C  G  R  T  N  D  S  L  G  I  Y  C  F  L  S   : G  T  R  C  H  Q  G  Q  G  I  C  Y  Y  L  L  H  F  F  R  E  S  C  E  :  I  D  S  *  V  *  A  T  D  A  S  F  I  C  C  H  S  S  S  Q  D  K  P  T  A  L  D  I  Q  W  C  I  S   : G  *  A  V  S  Y  C  *  R  N  F  P  H  P  C  R  S  K  T  S   : G  *  V  R  K  C  N  *  *  V  D  I  E  G  C  T  R  P  W  E  N  S  W  C  Y  K  T  T  *  P  S  C  C  F  P  E  S  W  *  R  I  C  G  E  D  H  *  A  *  K  L  G  *  Y  I  F  :  V  D  P  W  L  *  *  L  L  R  T  D  V  N  P  L  *  V  M  L  T  T  L  S  C  K  I  I  I  F  *  D  A  V  I  F  N  K  S  L  F  F  S  L  I  H  M  L  C  R  L  *  R  V  S  T  Y  F  A  S  L  F  L  C  I  K  *  Y  Y  I  Y  L  Q  V  N  K  *  L  *  L  L  S  Y  E  W  S  S  D  I  *  E  P  S  F  L  D  D  N  K  L  F  I  G  R  L  S  N  I  C  S  R  R  V  K  S  S  R  I  Q  D  *  F  K  S  K  P  S  I  S  E  V  V  Y  L  *  G  L  F  G  W  K  Q  V  I  Q  D  *  L  F  R  I  N  Y  S  </first_frame>
            <second_frame>  K  W  G  I  Y  A  K  Y  L  W  *  V  *  T  C  L  F  C  A  C  L  Q  D  A  S  Y  Q  F  S  F  I  P  G  S  D  A  I  L  L  G  A  E  T  L  R  G  L  Y  P  V  E  T  I  S  T  V  G  K  I  C  A  E  :  A  E  K  V  Y  N  Q  D  V  Y  F  K  R  A  V  K  C  V  G  E  P  M  T  H  L  E  S  I  A  S  S  A  :  V  R  A  A  I  K  V  K  A  S  V  I  I  C  F  T  S  S  G  R  A  A  R :   L  I  A  K  Y  R  P  P  M  P  V  L  S  V  V  I  P  R  L  K  T  N  Q  L  R  W  T  F  S  G  A  F  Q  :  A  R  Q  S  L  I  V  R  G  I  F  P  I  L  A  D  P  R  H  P  :  A  E  S  A  N  A  T  D  E  S  I  L  K  V  A  L  D  H  G  K  T  A  G  V  I  K  P  H  D  R  V  V  V  F  Q  K  V  G  D  A  S  V  V  K  I  I  E  L  E  N  *  A  S  T  S  L :   L  I  H  G  C  N  N  C  S  G  P  M  *  I  L  C  K  *  C  L  P  L  *  V  V  R  L  L  S  F  K  T  L  S  S  L  T  N  L  F  F  F  L  *  S  I  C  C  V  G  C  E  G  C  Q  P  T  L  L  H  Y  F  C  V  S  N  S  I  I  Y  I  F  R  *  I  S  S  Y  N  C  Y  L  M  N  G  V  V  I  Y  K  N  L  L  F  L  M  I  T  N  S  S  *  E  D  C  Q  T  F  V  L  G  E  *  N  H  Q  E  F  K  I  N  S  R  V  N  L  L  L  V  K  S  Y  T  F  R  G  C  L  V  G  N  K  L  F  R  I  N  C  F  G  *  I  I  P </second_frame>
            <third_frame>   N  G  E  Y  M  L  N  T  C  G  R  Y  K  R  A  F  F  V  L  V  S  K  M  L  H  I  N  F  L  S  S  Q  V  V  M  Q  F  F  *  V  Q  R  P  *  E  V  Y  I  L  L  R  L  F  P  L  L  V  K  F  V  Q  R :   Q  K  R  F  I  I  K  M  S  I  L  R  G  L  L  S  V  W  E  N  Q  *  L  T  W  N  L  L  L  P  Q  R :   Y  A  L  P  S  R  S  R  H  L  L  L  S  A  S  L  L  Q  G  E  L  R   : D  *  *  L  S  I  G  H  R  C  Q  F  Y  L  L  S  F  L  V  S  R  Q  T  N  C  A  G  H  S  V  V  H  F  R :   L  G  S  L  L  L  L  E  E  F  S  P  S  L  Q  I  Q  D  I  R :   L  S  P  Q  M  Q  L  M  S  R  Y  *  R  L  H  *  T  M  G  K  Q  L  V  L  *  N  H  M  T  E  L  L  F  S  R  K  L  V  T  H  L  W  *  R  S  L  S  L  K  I  R  L  V  H  L   : C  *  S  M  A  V  I  I  A  P  D  R  C  K  S  S  V  S  N  A  Y  H  F  K  L  *  D  Y  Y  L  L  R  R  C  H  L  *  Q  I  S  F  F  F  S  N  P  Y  V  V  *  A  V  K  G  V  N  L  L  C  F  T  I  F  V  Y  Q  I  V  L  Y  I  S  S  G  K  *  V  V  I  I  A  I  L  *  M  E  *  *  Y  I  R  T  F  F  S  *  *  *  Q  T  L  H  R  K  I  V  K  H  L  F  *  E  S  E  I  I  K  N  S  R  L  I  Q  E  *  T  F  Y  *  *  S  R  I  P  L  G  V  V  W  L  E  T  S  Y  S  G  L  I  V  S  D  K  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73299" stop="73445"/>
                    <exon start="74582" stop="74677"/>
                    <exon start="74795" stop="74862"/>
                    <exon start="75039" stop="75138"/>
                    <exon start="75736" stop="75795"/>
                    <exon start="77087" stop="77239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCLFCACLQDASYQFSFIPGSDAILLGAETLRGLYPVETISTVGKICAEAEKVYNQDVYFKRAVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPPMPVLSVVIPRLKTNQLRWTFSGAFQARQSLIVRGIFPILADPRHPAESANATDESILKVALDHGKTAGVIKPHDRVVVFQKVGDASVVKIIELEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="81554" PGL_stop="80201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81554" e_stop="81479"/>
            <exon e_start="81387" e_stop="81295"/>
            <exon e_start="80820" e_stop="80201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.628" acc_prob="0.993" e_score="0.961"/>
          <exon-intron don_prob="0.901" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="81554" e_stop="81479" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.628" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81478" i_stop="81388" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81387" e_stop="81295" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81294" i_stop="80821" i_length="474"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80820" e_stop="80201" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81554" stop="81479"/>
              <exon start="81387" stop="81295"/>
              <exon start="80820" stop="80201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81553" stop="81479"/>
              <exon start="81387" stop="81295"/>
              <exon start="80820" stop="80258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATGAAACCAAACATTGTTCCTAGTTGTATTAGATCAGAAAATTACATGATCACTTTCGAGGTTGAGGAAGAAAA : GTTTCCTTTCTTTGGTAAGAAGTATCAATTGAAGTTTGCAAGTGACATCTCTGCTGAAACCCAATGTTTGGTTCATTTTCCAAGCCTGCTCAG : GTTGGCGAGAGAGGCTGGCCTTGAGCACACGGAGATTCAGAACTTGACAGATTTTTATGATGATAACAGGTAATAGATTGTAACTTACAACTTCACCATCATGGCTGTTTCATTTTGCTTGTTTACCATCTTAATCTATCATATGAAATTACCTGAATTTTTATCACATCATTGATGAAGCCATGAAGGTAAAGTGATGATTCTCTTGAAGTTTAACTTTAAAATGTGATAGTTTATTGCATAGGGAATTTATATTCTTCATGGCAATGCACATGCCAAAAAGTAGTGTATACATGCCTTGCATAGTACTCAGATGGATGTATTATTGGGTGGGAACCCAACTTCAGATCAACTTTTATCATGTTGTGAAGTGTTCAGTCTTTGTCTCACCAAGTACACCATAATATTTCCTAGCAAGTGCGGAAGAAAATGGTTTCCCATCACTTGATCATTTTTCCTACCTTTTAAGAATTTAATGGGTCACTTATAGTATACTGATTTTATTTTTCTAATTATGTCTACTTTTCCTTTTCTTTTGGTTGTTAAAATTTATTGATTTCTTTAGAAGGTTTATGAGGGTTGTTAGCTGGACAGGAATAACTCCAGCATGGAATTATTGC</gDNA_template>
            <first_frame> G  *  N  Q  T  L  F  L  V  V  L  D  Q  K  I  T  *  S  L  S  R  L  R  K  K   : S  F  L  S  L  V  R  S  I  N  *  S  L  Q  V  T  S  L  L  K  P  N  V  W  F  I  F  Q  A  C  S   : G  W  R  E  R  L  A  L  S  T  R  R  F  R  T  *  Q  I  F  M  M  I  T  G  N  R  L  *  L  T  T  S  P  S  W  L  F  H  F  A  C  L  P  S  *  S  I  I  *  N  Y  L  N  F  Y  H  I  I  D  E  A  M  K  V  K  *  *  F  S  *  S  L  T  L  K  C  D  S  L  L  H  R  E  F  I  F  F  M  A  M  H  M  P  K  S  S  V  Y  M  P  C  I  V  L  R  W  M  Y  Y  W  V  G  T  Q  L  Q  I  N  F  Y  H  V  V  K  C  S  V  F  V  S  P  S  T  P  *  Y  F  L  A  S  A  E  E  N  G  F  P  S  L  D  H  F  S  Y  L  L  R  I  *  W  V  T  Y  S  I  L  I  L  F  F  *  L  C  L  L  F  L  F  F  W  L  L  K  F  I  D  F  F  R  R  F  M  R  V  V  S  W  T  G  I  T  P  A  W  N  Y  C </first_frame>
            <second_frame>  D  E  T  K  H  C  S  *  L  Y  *  I  R  K  L  H  D  H  F  R  G  *  G  R  K  :  V  S  F  L  W  *  E  V  S  I  E  V  C  K  *  H  L  C  *  N  P  M  F  G  S  F  S  K  P  A  Q  :  V  G  E  R  G  W  P  *  A  H  G  D  S  E  L  D  R  F  L  *  *  *  Q  V  I  D  C  N  L  Q  L  H  H  H  G  C  F  I  L  L  V  Y  H  L  N  L  S  Y  E  I  T  *  I  F  I  T  S  L  M  K  P  *  R  *  S  D  D  S  L  E  V  *  L  *  N  V  I  V  Y  C  I  G  N  L  Y  S  S  W  Q  C  T  C  Q  K  V  V  Y  T  C  L  A  *  Y  S  D  G  C  I  I  G  W  E  P  N  F  R  S  T  F  I  M  L  *  S  V  Q  S  L  S  H  Q  V  H  H  N  I  S  *  Q  V  R  K  K  M  V  S  H  H  L  I  I  F  P  T  F  *  E  F  N  G  S  L  I  V  Y  *  F  Y  F  S  N  Y  V  Y  F  S  F  S  F  G  C  *  N  L  L  I  S  L  E  G  L  *  G  L  L  A  G  Q  E  *  L  Q  H  G  I  I   </second_frame>
            <third_frame>   M  K  P  N  I  V  P  S  C  I  R  S  E  N  Y  M  I  T  F  E  V  E  E  E  K :   F  P  F  F  G  K  K  Y  Q  L  K  F  A  S  D  I  S  A  E  T  Q  C  L  V  H  F  P  S  L  L  R :   L  A  R  E  A  G  L  E  H  T  E  I  Q  N  L  T  D  F  Y  D  D  N  R  *  *  I  V  T  Y  N  F  T  I  M  A  V  S  F  C  L  F  T  I  L  I  Y  H  M  K  L  P  E  F  L  S  H  H  *  *  S  H  E  G  K  V  M  I  L  L  K  F  N  F  K  M  *  *  F  I  A  *  G  I  Y  I  L  H  G  N  A  H  A  K  K  *  C  I  H  A  L  H  S  T  Q  M  D  V  L  L  G  G  N  P  T  S  D  Q  L  L  S  C  C  E  V  F  S  L  C  L  T  K  Y  T  I  I  F  P  S  K  C  G  R  K  W  F  P  I  T  *  S  F  F  L  P  F  K  N  L  M  G  H  L  *  Y  T  D  F  I  F  L  I  M  S  T  F  P  F  L  L  V  V  K  I  Y  *  F  L  *  K  V  Y  E  G  C  *  L  D  R  N  N  S  S  M  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81552" stop="81479"/>
                    <exon start="81387" stop="81295"/>
                    <exon start="80820" stop="80748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKPNIVPSCIRSENYMITFEVEEEKFPFFGKKYQLKFASDISAETQCLVHFPSLLRLAREAGLEHTEIQNLTDFYDDNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80611" stop="80417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTLKCDSLLHREFIFFMAMHMPKSSVYMPCIVLRWMYYWVGTQLQINFYHVVKCSVFVSPSTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="85068" PGL_stop="82918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85068" e_stop="84911"/>
            <exon e_start="84610" e_stop="84532"/>
            <exon e_start="83807" e_stop="83713"/>
            <exon e_start="83136" e_stop="83065"/>
            <exon e_start="82977" e_stop="82918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.968" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.958"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85068" e_stop="84911" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84910" i_stop="84611" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84610" e_stop="84532" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84531" i_stop="83808" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83807" e_stop="83713" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83712" i_stop="83137" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="83136" e_stop="83065" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83064" i_stop="82978" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="82977" e_stop="82918" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85068" stop="84911"/>
              <exon start="84610" stop="84532"/>
              <exon start="83807" stop="83713"/>
              <exon start="83136" stop="83065"/>
              <exon start="82977" stop="82918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACGAGAGCAGTAGGGTTTTTGTGTGGGTTTTAGAGGCGATGATGATGATGGCGAATTCATTCCCGATTCACAGACCTGCCGAGTCAACTCACCATCGACTTCTCGATTTCGTCAAAAATGTGCTTATCGGTATCTTCGTCTCCCCATATGCCACT : GTATGTGATATGTATTGTGGAAAAGTACCTGATGTGGAGAAGTGGGATGAAGCTCAAATTGGTCACTATATTGGCATTG : ATGTGGAAGCTTCGGGAGTGAATGAAGTGAAGGAAGCGTGGGAGAGTCAGCGGAAGGCTTACACATCTGAGTTCATTGAGCTCGATCTTTGTATT : GAAGATATAGAATCATTTTGGAAGGACAAGGAAAAGCAGGCCGATGTTGTTTTCTGCATGCACAATTTACAG : GCGTGCTTTGATAGTGAAGAGAAAGCAAGGAGGCTATTGCATAATGTATCAGCTTTGCTT</gDNA_template>
            <first_frame> *  T  R  A  V  G  F  L  C  G  F  *  R  R  *  *  *  W  R  I  H  S  R  F  T  D  L  P  S  Q  L  T  I  D  F  S  I  S  S  K  M  C  L  S  V  S  S  S  P  H  M  P  L :   Y  V  I  C  I  V  E  K  Y  L  M  W  R  S  G  M  K  L  K  L  V  T  I  L  A  L  :  M  W  K  L  R  E  *  M  K  *  R  K  R  G  R  V  S  G  R  L  T  H  L  S  S  L  S  S  I  F  V  L :   K  I  *  N  H  F  G  R  T  R  K  S  R  P  M  L  F  S  A  C  T  I  Y  R :   R  A  L  I  V  K  R  K  Q  G  G  Y  C  I  M  Y  Q  L  C   </first_frame>
            <second_frame>  E  R  E  Q  *  G  F  C  V  G  F  R  G  D  D  D  D  G  E  F  I  P  D  S  Q  T  C  R  V  N  S  P  S  T  S  R  F  R  Q  K  C  A  Y  R  Y  L  R  L  P  I  C  H   : C  M  *  Y  V  L  W  K  S  T  *  C  G  E  V  G  *  S  S  N  W  S  L  Y  W  H  * :   C  G  S  F  G  S  E  *  S  E  G  S  V  G  E  S  A  E  G  L  H  I  *  V  H  *  A  R  S  L  Y   : *  R  Y  R  I  I  L  E  G  Q  G  K  A  G  R  C  C  F  L  H  A  Q  F  T   : G  V  L  *  *  *  R  E  S  K  E  A  I  A  *  C  I  S  F  A  </second_frame>
            <third_frame>   N  E  S  S  R  V  F  V  W  V  L  E  A  M  M  M  M  A  N  S  F  P  I  H  R  P  A  E  S  T  H  H  R  L  L  D  F  V  K  N  V  L  I  G  I  F  V  S  P  Y  A  T  :  V  C  D  M  Y  C  G  K  V  P  D  V  E  K  W  D  E  A  Q  I  G  H  Y  I  G  I   : D  V  E  A  S  G  V  N  E  V  K  E  A  W  E  S  Q  R  K  A  Y  T  S  E  F  I  E  L  D  L  C  I  :  E  D  I  E  S  F  W  K  D  K  E  K  Q  A  D  V  V  F  C  M  H  N  L  Q  :  A  C  F  D  S  E  E  K  A  R  R  L  L  H  N  V  S  A  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85066" stop="84911"/>
                    <exon start="84610" stop="84532"/>
                    <exon start="83807" stop="83713"/>
                    <exon start="83136" stop="83065"/>
                    <exon start="82977" stop="82918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NESSRVFVWVLEAMMMMANSFPIHRPAESTHHRLLDFVKNVLIGIFVSPYATVCDMYCGKVPDVEKWDEAQIGHYIGIDVEASGVNEVKEAWESQRKAYTSEFIELDLCIEDIESFWKDKEKQADVVFCMHNLQACFDSEEKARRLLHNVSALL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="87759" PGL_stop="89355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87759" e_stop="87948"/>
            <exon e_start="88778" e_stop="89355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87759" e_stop="87948" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87949" i_stop="88777" i_length="829"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="88778" e_stop="89355" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87759" stop="87948"/>
              <exon start="88778" stop="89355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTTTTCACTGATTTTGTAAAGGTTGCTCAAGATGAAGGGCGGCATTTTACTCTACTTGCAGCACGGCTTAAGGAACTAGGTTCATTCTATGGAGCTTTACCTGCTCATGATGGCCTGTGGGATTCAGCCATTGCTACTTCTAGCGATCTGTTGGCTCGTTTGGCTATTGAACACTGTGTTCATGAG : GCCAGAGGACTTGATGTGATTCCAACAACAATATCCCGTTTCCGCAATGGTGGTGATAGTGAAACAGCTGAGTTACTGGAGAATGTGGTGTATCCAGAAGAAATAACTCACTGCGCTGCAGGAGTCAAATGGTTCAAGTATCTTTGCGTAAGATCAAAAAATCCAAATCTGAGTGATATTCCTTCAGAAGAAACTAGTAATGTAGACAATGAAGTGATTCAAAAGTTCCATTCCACTGTGAGGACATATTTCAGAGGGCCATTGAAACCTCCTTTTAATGAGCAAGCAAGAAAAGCTGCTGGATTTGGTCCACAATGGTATGAACCTCTTGCTGTTAAAGATTTCACAGTAGTATGAAGGTCTCTCCTCGCTGGTAGAACGTTGTAGCAGATACCCTGCAGAATTAGTCGAGGTGTGCAAAAGTTGGCCCAAACATTACGGTTTATTCCAAAAACCAAAGCTCCTCCTCTGGTTTCTGTAAAACTATATTTCAAAATTTTCAGGATATTAAGCATAAATGGTACACTAGATTATTGAGGGGATTCTTCAAAATAGATCAACAACTATTTGTATCCTTG</gDNA_template>
            <first_frame> R  V  F  H  *  F  C  K  G  C  S  R  *  R  A  A  F  Y  S  T  C  S  T  A  *  G  T  R  F  I  L  W  S  F  T  C  S  *  W  P  V  G  F  S  H  C  Y  F  *  R  S  V  G  S  F  G  Y  *  T  L  C  S  *   : G  Q  R  T  *  C  D  S  N  N  N  I  P  F  P  Q  W  W  *  *  *  N  S  *  V  T  G  E  C  G  V  S  R  R  N  N  S  L  R  C  R  S  Q  M  V  Q  V  S  L  R  K  I  K  K  S  K  S  E  *  Y  S  F  R  R  N  *  *  C  R  Q  *  S  D  S  K  V  P  F  H  C  E  D  I  F  Q  R  A  I  E  T  S  F  *  *  A  S  K  K  S  C  W  I  W  S  T  M  V  *  T  S  C  C  *  R  F  H  S  S  M  K  V  S  P  R  W  *  N  V  V  A  D  T  L  Q  N  *  S  R  C  A  K  V  G  P  N  I  T  V  Y  S  K  N  Q  S  S  S  S  G  F  C  K  T  I  F  Q  N  F  Q  D  I  K  H  K  W  Y  T  R  L  L  R  G  F  F  K  I  D  Q  Q  L  F  V  S  L </first_frame>
            <second_frame>  E  F  F  T  D  F  V  K  V  A  Q  D  E  G  R  H  F  T  L  L  A  A  R  L  K  E  L  G  S  F  Y  G  A  L  P  A  H  D  G  L  W  D  S  A  I  A  T  S  S  D  L  L  A  R  L  A  I  E  H  C  V  H  E  :  A  R  G  L  D  V  I  P  T  T  I  S  R  F  R  N  G  G  D  S  E  T  A  E  L  L  E  N  V  V  Y  P  E  E  I  T  H  C  A  A  G  V  K  W  F  K  Y  L  C  V  R  S  K  N  P  N  L  S  D  I  P  S  E  E  T  S  N  V  D  N  E  V  I  Q  K  F  H  S  T  V  R  T  Y  F  R  G  P  L  K  P  P  F  N  E  Q  A  R  K  A  A  G  F  G  P  Q  W  Y  E  P  L  A  V  K  D  F  T  V  V  *  R  S  L  L  A  G  R  T  L  *  Q  I  P  C  R  I  S  R  G  V  Q  K  L  A  Q  T  L  R  F  I  P  K  T  K  A  P  P  L  V  S  V  K  L  Y  F  K  I  F  R  I  L  S  I  N  G  T  L  D  Y  *  G  D  S  S  K  *  I  N  N  Y  L  Y  P   </second_frame>
            <third_frame>   S  F  S  L  I  L  *  R  L  L  K  M  K  G  G  I  L  L  Y  L  Q  H  G  L  R  N  *  V  H  S  M  E  L  Y  L  L  M  M  A  C  G  I  Q  P  L  L  L  L  A  I  C  W  L  V  W  L  L  N  T  V  F  M  R :   P  E  D  L  M  *  F  Q  Q  Q  Y  P  V  S  A  M  V  V  I  V  K  Q  L  S  Y  W  R  M  W  C  I  Q  K  K  *  L  T  A  L  Q  E  S  N  G  S  S  I  F  A  *  D  Q  K  I  Q  I  *  V  I  F  L  Q  K  K  L  V  M  *  T  M  K  *  F  K  S  S  I  P  L  *  G  H  I  S  E  G  H  *  N  L  L  L  M  S  K  Q  E  K  L  L  D  L  V  H  N  G  M  N  L  L  L  L  K  I  S  Q  *  Y  E  G  L  S  S  L  V  E  R  C  S  R  Y  P  A  E  L  V  E  V  C  K  S  W  P  K  H  Y  G  L  F  Q  K  P  K  L  L  L  W  F  L  *  N  Y  I  S  K  F  S  G  Y  *  A  *  M  V  H  *  I  I  E  G  I  L  Q  N  R  S  T  T  I  C  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87760" stop="87948"/>
                    <exon start="88778" stop="89134"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
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              <exon start="91216" stop="91140"/>
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              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431276" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91065" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91062" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91035" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90012" stop="89961"/>
              <exon start="89865" stop="89486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282395" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAGCGGAATAATAATAAGCATATAGAAGTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG : ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG : GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG : GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG : ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG : AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG : CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG : GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG : ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG : CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG : GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG : GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG : GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</gDNA_template>
            <first_frame> H  S  G  I  I  I  S  I  *  K  L  K  K  A  K  A  W  W  I  C  E  *  S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  L  Q  S  G  V  R  H  F  S  S  A   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G :   F  L  A  K  I  L  A  P  E  G  S  K  D  V  A  V  G  Q  P  I  A  I  M  :  V  E  D  E  N  D  I  E  A  V  R  T  S  I  S  G  N  N  V  V  K  E  E  K  P  V  S  H  D  V  T  T  E  V  R  T  Q  T  T  G  F  N  R  I  S  P  A  A  K  V  L  I  M  E  H  G  L  D  A  S  S  I  P  A  S  G  P  R  G  T  L  L  K  G  D  V  L  A  A  L  K  S  G  K  G  S  S  N  N  S  S  V  G  K  A  T  P  S  P  P  Q  V  N  Q  Q  A  T  P  T  K  S  L  D  L  K  S  D  G  Q  Q  K  D  A  Y  E  D  L  P  N  S  Q  I  R  K  :  V  I  A  A  R  L  L  E  S  K  Q  S  T  P  H  L  Y  L  S  T   : D  V  I  L  D  S  L  L  S  F  R  K  E  L  K   : E  K  Y  D  V  K  V  S  V  N  D  I  V  I  K  V  V  A  A  T  L  R  N  V  P  G  A  N   : A  Y  W  D  D  G  K  G  E  V  V  L  C  D  S  V  D  I  S  V  A  V  A  T  E  K  :  G  L  M  T  P  I  I  R  N  A  D  Q  K  S  I  S  S  I  S  A  E  :  I  K  E  L  A  G  K  A  R  A  G  K  L  K  P  N  E  F  Q  G  G  T  F  S :   I  S  N  L  G  M  F  P  V  D  R  F  C  A  I  I  N  P  P  Q  :  A  G  I  I  A  V  G  R  G  N  K  V  V  E  P  V  V  G  A  D   : G  I  E  K  P  A  V  V  N  K  M  S  L  T  L  S  A  D  H  R  V  F  D  G  K  V  G   : G  A  F  V  S  A  L  S  S  N  F  S  D  I  K  K  L  L  L  *  Y  G  *  S  V  W  E  Q  N  I  L  Q  D  M  S  P  V  Q  A  A  *  L  F  F  L  M  I  V  C  L  F  Q  I  S  S  L  Y  *  W  C  H  F  C  S  *  R  *  K  *  F  E  V  H  K  I  G  L  V  P  I  P  M  I  L  P  F  L  L  R  C  Q  V  Y  D  T  S  Q  F  H  L  F  S  L  *  S  C  T  I  G  V  P  Q  Y  F  L  P  N  K  K  L  I  F  S  S  L  A  H  I  M  F  F  L  Y  F  Y  R  P  C  N  S  *  T  K  F  L  L  F  N  H  Q  K  K  I  I  A  Q  Y  I  L  T  D  K  Y  K  T  Q  *  *  E  L  T  R  </first_frame>
            <second_frame>  I  A  E  *  *  *  A  Y  R  S  *  R  K  Q  K  R  G  G  S  V  N  D  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  S :   Y  K  V  V  F  G  T  S  R  Q  L  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K   : D  S  W  P  K  Y  W  H  L  K  V  Q  K  M  W  L  L  G  S  L  L  Q  S  W :   L  R  M  K  M  I  L  K  L  *  G  H  R  S  A  A  T  M  W  L  R  K  K  S  R  S  V  M  M  S  Q  L  K  L  E  L  R  Q  Q  V  S  I  E  S  V  Q  L  L  R  Y  *  L  W  N  M  V  *  M  H  H  Q  F  Q  H  L  V  L  V  V  P  C  *  R  E  M  F  L  L  H  *  S  L  E  R  D  Q  A  T  I  H  Q  L  G  R  Q  L  H  L  L  L  R  S  T  N  K  L  L  Q  Q  S  H  L  I  *  N  L  M  D  S  K  R  M  L  M  K  I  Y  P  I  V  K  F  A  R :   *  *  Q  Q  G  Y  W  N  L  S  N  L  P  L  T  C  I  C  P  Q  :  M  L  Y  W  T  L  F  S  P  S  E  R  S  L  K  :  K  S  M  M  L  K  S  L  *  M  T  L  *  S  K  W  L  Q  Q  H  *  E  M  Y  Q  E  Q  M  :  L  T  G  M  M  E  K  V  R  W  C  F  V  I  L  S  I  Y  L  L  R  L  P  L  K  R :   A  *  *  P  Q  L  S  G  M  L  I  K  N  P  Y  P  Q  Y  L  R  R :   S  R  S  L  L  E  R  H  E  L  E  S  L  N  L  M  N  S  K  V  A  L  S   : A  F  Q  T  W  A  C  F  Q  W  I  G  F  V  Q  L  S  T  L  L  R :   P  V  *  L  L  L  V  G  A  I  K  L  S  N  L  W  L  V  L  T  :  E  L  R  N  Q  L  L  L  T  R  *  V  *  H  Y  Q  L  I  I  A  S  L  M  G  R  L  E  :  V  R  S  F  Q  H  C  H  L  T  S  V  T  S  R  S  F  Y  F  N  T  D  E  V  S  G  N  K  I  S  Y  R  T  C  H  L  C  R  R  R  S  C  F  F  *  *  *  F  A  S  F  R  S  Q  A  C  I  N  G  A  I  F  V  L  E  D  R  N  D  L  R  S  I  K  L  D  *  F  Q  Y  Q  *  Y  Y  H  F  F  *  D  A  K  F  M  T  L  H  S  S  I  C  S  P  C  K  V  V  Q  *  G  C  L  N  I  F  Y  Q  I  K  S  *  F  F  P  L  L  L  I  *  C  F  S  F  T  F  T  D  H  V  T  A  K  P  N  F  F  C  L  I  T  K  R  K  L  L  L  N  T  Y  *  L  I  N  I  K  L  N  D  E  N  *  Q  G </second_frame>
            <third_frame>   *  R  N  N  N  K  H  I  E  V  E  E  S  K  S  V  V  D  L  *  M  I  D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : A  T  K  W  C  S  A  L  L  V  S  * :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  :  I  L  G  Q  N  T  G  T  *  R  F  K  R  C  G  C  W  A  A  Y  C  N  H   : G  *  G  *  K  *  Y  *  S  C  E  D  I  D  Q  R  Q  Q  C  G  *  G  R  K  A  G  Q  S  *  C  H  N  *  S  *  N  S  D  N  R  F  Q  *  N  Q  S  S  C  *  G  I  N  Y  G  T  W  F  R  C  I  I  N  S  S  I  W  S  S  W  Y  L  V  K  G  R  C  S  C  C  I  E  V  W  K  G  I  K  Q  Q  F  I  S  W  E  G  N  S  I  S  S  S  G  Q  P  T  S  Y  S  N  K  V  T  *  F  K  I  *  W  T  A  K  G  C  L  *  R  F  T  Q  *  S  N  S  Q   : G  D  S  S  K  V  I  G  I  *  A  I  Y  P  S  L  V  F  V  H  R :   C  Y  I  G  L  S  S  L  L  Q  K  G  A  *  R :   K  V  *  C  *  S  L  C  E  *  H  C  N  Q  S  G  C  S  N  I  K  K  C  T  R  S  K  C :   L  L  G  *  W  K  R  *  G  G  A  L  *  F  C  R  Y  I  C  C  G  C  H  *  K   : G  L  D  D  P  N  Y  Q  E  C  *  S  K  I  H  I  L  N  I  C  G   : D  Q  G  A  C  W  K  G  T  S  W  K  A  *  T  *  *  I  P  R  W  H  F  Q  :  H  F  K  L  G  H  V  S  S  G  S  V  L  C  N  Y  Q  P  S  S   : G  R  Y  N  C  C  W  *  G  Q  *  S  C  R  T  C  G  W  C  *  R :   N  *  E  T  S  C  C  *  Q  D  E  F  D  I  I  S  *  S  S  R  L  *  W  E  G  W  R :   C  V  R  F  S  I  V  I  *  L  Q  *  H  Q  E  A  S  T  L  I  R  M  K  C  L  G  T  K  Y  P  T  G  H  V  T  C  A  G  G  V  V  V  F  S  D  D  S  L  P  L  S  D  L  K  L  V  L  M  V  P  F  L  F  L  K  I  E  M  I  *  G  P  *  N  W  T  S  S  N  T  N  D  T  T  I  S  S  E  M  P  S  L  *  H  F  T  V  P  S  V  L  P  V  K  L  Y  N  R  G  A  S  I  F  F  T  K  *  K  A  D  F  F  L  S  C  S  Y  N  V  F  P  L  L  L  Q  T  M  *  Q  L  N  Q  I  S  F  V  *  S  P  K  E  N  Y  C  S  I  H  I  N  *  *  I  *  N  S  M  M  R  I  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="103411" stop="103378"/>
                    <exon start="100996" stop="100947"/>
                    <exon start="100846" stop="100802"/>
                    <exon start="100665" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96670"/>
                    <exon start="96231" stop="96162"/>
                    <exon start="95942" stop="95541"/>
                    <exon start="93878" stop="93818"/>
                    <exon start="93641" stop="93597"/>
                    <exon start="93512" stop="93429"/>
                    <exon start="91216" stop="91140"/>
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                  <frame>0</frame>
                  <number_coding_nucleotides>1935</number_coding_nucleotides>
                  <number_encoded_amino_acids>645</number_encoded_amino_acids>
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              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKLQSGVRHFSSAEAPSYTEVGMPALSPTMTQGNIAKWIKKEGDKIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEGFLAKILAPEGSKDVAVGQPIAIMVEDENDIEAVRTSISGNNVVKEEKPVSHDVTTEVRTQTTGFNRISPAAKVLIMEHGLDASSIPASGPRGTLLKGDVLAALKSGKGSSNNSSVGKATPSPPQVNQQATPTKSLDLKSDGQQKDAYEDLPNSQIRKVIAARLLESKQSTPHLYLSTDVILDSLLSFRKELKEKYDVKVSVNDIVIKVVAATLRNVPGANAYWDDGKGEVVLCDSVDISVAVATEKGLMTPIIRNADQKSISSISAEIKELAGKARAGKLKPNEFQGGTFSISNLGMFPVDRFCAIINPPQAGIIAVGRGNKVVEPVVGADGIEKPAVVNKMSLTLSADHRVFDGKVGGAFVSALSSNFSDIKKLLL*</predicted_protein_sequence>
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            <gDNA_exon_coordinates>
              <exon start="95610" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93597"/>
              <exon start="93512" stop="93429"/>
              <exon start="91216" stop="91140"/>
              <exon start="91068" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91216" stop="91140"/>
              <exon start="91068" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431276" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91065" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91062" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91035" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90012" stop="89961"/>
              <exon start="89865" stop="89486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282395" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG : ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG : GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAG : TCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG : GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG : ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG : AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG : CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG : GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG : ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG : CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG : GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG : GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG : GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</gDNA_template>
            <first_frame> V  E  E  S  K  S  V  V  D  L  *  M  I  D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : A  T  K  W  C  S  A  L  L  V  S  * :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  :  I  L  G  Q  N  T  G  T  *  R  F  K  R  C  G  C  W  A  A  Y  C  N  H   : G  *  G  *  K  *  Y  *  S  C  E  D  I  D  Q  R  Q  Q  C  G  *  G  R  K  A  G  Q  S  *  C  H  N  *  S  *  N  S  D  N  R  F  Q  *  N  Q  S  S  C  *   : V  W  K  G  I  K  Q  Q  F  I  S  W  E  G  N  S  I  S  S  S  G  Q  P  T  S  Y  S  N  K  V  T  *  F  K  I  *  W  T  A  K  G  C  L  *  R  F  T  Q  *  S  N  S  Q   : G  D  S  S  K  V  I  G  I  *  A  I  Y  P  S  L  V  F  V  H  R :   C  Y  I  G  L  S  S  L  L  Q  K  G  A  *  R :   K  V  *  C  *  S  L  C  E  *  H  C  N  Q  S  G  C  S  N  I  K  K  C  T  R  S  K  C :   L  L  G  *  W  K  R  *  G  G  A  L  *  F  C  R  Y  I  C  C  G  C  H  *  K   : G  L  D  D  P  N  Y  Q  E  C  *  S  K  I  H  I  L  N  I  C  G   : D  Q  G  A  C  W  K  G  T  S  W  K  A  *  T  *  *  I  P  R  W  H  F  Q  :  H  F  K  L  G  H  V  S  S  G  S  V  L  C  N  Y  Q  P  S  S   : G  R  Y  N  C  C  W  *  G  Q  *  S  C  R  T  C  G  W  C  *  R :   N  *  E  T  S  C  C  *  Q  D  E  F  D  I  I  S  *  S  S  R  L  *  W  E  G  W  R :   C  V  R  F  S  I  V  I  *  L  Q  *  H  Q  E  A  S  T  L  I  R  M  K  C  L  G  T  K  Y  P  T  G  H  V  T  C  A  G  G  V  V  V  F  S  D  D  S  L  P  L  S  D  L  K  L  V  L  M  V  P  F  L  F  L  K  I  E  M  I  *  G  P  *  N  W  T  S  S  N  T  N  D  T  T  I  S  S  E  M  P  S  L  *  H  F  T  V  P  S  V  L  P  V  K  L  Y  N  R  G  A  S  I  F  F  T  K  *  K  A  D  F  F  L  S  C  S  Y  N  V  F  P  L  L  L  Q  T  M  *  Q  L  N  Q  I  S  F  V  *  S  P  K  E  N  Y  C  S  I  H  I  N  *  *  I  *  N  S  M  M  R  I  D  K   </first_frame>
            <second_frame>  L  K  K  A  K  A  W  W  I  C  E  *  S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  L  Q  S  G  V  R  H  F  S  S  A   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G :   F  L  A  K  I  L  A  P  E  G  S  K  D  V  A  V  G  Q  P  I  A  I  M  :  V  E  D  E  N  D  I  E  A  V  R  T  S  I  S  G  N  N  V  V  K  E  E  K  P  V  S  H  D  V  T  T  E  V  R  T  Q  T  T  G  F  N  R  I  S  P  A  A  K  :  S  G  K  G  S  S  N  N  S  S  V  G  K  A  T  P  S  P  P  Q  V  N  Q  Q  A  T  P  T  K  S  L  D  L  K  S  D  G  Q  Q  K  D  A  Y  E  D  L  P  N  S  Q  I  R  K  :  V  I  A  A  R  L  L  E  S  K  Q  S  T  P  H  L  Y  L  S  T   : D  V  I  L  D  S  L  L  S  F  R  K  E  L  K   : E  K  Y  D  V  K  V  S  V  N  D  I  V  I  K  V  V  A  A  T  L  R  N  V  P  G  A  N   : A  Y  W  D  D  G  K  G  E  V  V  L  C  D  S  V  D  I  S  V  A  V  A  T  E  K  :  G  L  M  T  P  I  I  R  N  A  D  Q  K  S  I  S  S  I  S  A  E  :  I  K  E  L  A  G  K  A  R  A  G  K  L  K  P  N  E  F  Q  G  G  T  F  S :   I  S  N  L  G  M  F  P  V  D  R  F  C  A  I  I  N  P  P  Q  :  A  G  I  I  A  V  G  R  G  N  K  V  V  E  P  V  V  G  A  D   : G  I  E  K  P  A  V  V  N  K  M  S  L  T  L  S  A  D  H  R  V  F  D  G  K  V  G   : G  A  F  V  S  A  L  S  S  N  F  S  D  I  K  K  L  L  L  *  Y  G  *  S  V  W  E  Q  N  I  L  Q  D  M  S  P  V  Q  A  A  *  L  F  F  L  M  I  V  C  L  F  Q  I  S  S  L  Y  *  W  C  H  F  C  S  *  R  *  K  *  F  E  V  H  K  I  G  L  V  P  I  P  M  I  L  P  F  L  L  R  C  Q  V  Y  D  T  S  Q  F  H  L  F  S  L  *  S  C  T  I  G  V  P  Q  Y  F  L  P  N  K  K  L  I  F  S  S  L  A  H  I  M  F  F  L  Y  F  Y  R  P  C  N  S  *  T  K  F  L  L  F  N  H  Q  K  K  I  I  A  Q  Y  I  L  T  D  K  Y  K  T  Q  *  *  E  L  T  R  </second_frame>
            <third_frame>   *  R  K  Q  K  R  G  G  S  V  N  D  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  S :   Y  K  V  V  F  G  T  S  R  Q  L  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K   : D  S  W  P  K  Y  W  H  L  K  V  Q  K  M  W  L  L  G  S  L  L  Q  S  W :   L  R  M  K  M  I  L  K  L  *  G  H  R  S  A  A  T  M  W  L  R  K  K  S  R  S  V  M  M  S  Q  L  K  L  E  L  R  Q  Q  V  S  I  E  S  V  Q  L  L  S :   L  E  R  D  Q  A  T  I  H  Q  L  G  R  Q  L  H  L  L  L  R  S  T  N  K  L  L  Q  Q  S  H  L  I  *  N  L  M  D  S  K  R  M  L  M  K  I  Y  P  I  V  K  F  A  R :   *  *  Q  Q  G  Y  W  N  L  S  N  L  P  L  T  C  I  C  P  Q  :  M  L  Y  W  T  L  F  S  P  S  E  R  S  L  K  :  K  S  M  M  L  K  S  L  *  M  T  L  *  S  K  W  L  Q  Q  H  *  E  M  Y  Q  E  Q  M  :  L  T  G  M  M  E  K  V  R  W  C  F  V  I  L  S  I  Y  L  L  R  L  P  L  K  R :   A  *  *  P  Q  L  S  G  M  L  I  K  N  P  Y  P  Q  Y  L  R  R :   S  R  S  L  L  E  R  H  E  L  E  S  L  N  L  M  N  S  K  V  A  L  S   : A  F  Q  T  W  A  C  F  Q  W  I  G  F  V  Q  L  S  T  L  L  R :   P  V  *  L  L  L  V  G  A  I  K  L  S  N  L  W  L  V  L  T  :  E  L  R  N  Q  L  L  L  T  R  *  V  *  H  Y  Q  L  I  I  A  S  L  M  G  R  L  E  :  V  R  S  F  Q  H  C  H  L  T  S  V  T  S  R  S  F  Y  F  N  T  D  E  V  S  G  N  K  I  S  Y  R  T  C  H  L  C  R  R  R  S  C  F  F  *  *  *  F  A  S  F  R  S  Q  A  C  I  N  G  A  I  F  V  L  E  D  R  N  D  L  R  S  I  K  L  D  *  F  Q  Y  Q  *  Y  Y  H  F  F  *  D  A  K  F  M  T  L  H  S  S  I  C  S  P  C  K  V  V  Q  *  G  C  L  N  I  F  Y  Q  I  K  S  *  F  F  P  L  L  L  I  *  C  F  S  F  T  F  T  D  H  V  T  A  K  P  N  F  F  C  L  I  T  K  R  K  L  L  L  N  T  Y  *  L  I  N  I  K  L  N  D  E  N  *  Q  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="103411" stop="103378"/>
                    <exon start="100996" stop="100947"/>
                    <exon start="100846" stop="100802"/>
                    <exon start="100665" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96670"/>
                    <exon start="96231" stop="96162"/>
                    <exon start="95942" stop="95796"/>
                    <exon start="95699" stop="95541"/>
                    <exon start="93878" stop="93818"/>
                    <exon start="93641" stop="93597"/>
                    <exon start="93512" stop="93429"/>
                    <exon start="91216" stop="91140"/>
                    <exon start="91068" stop="91006"/>
                    <exon start="90722" stop="90652"/>
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                  <frame>1</frame>
                  <number_coding_nucleotides>1839</number_coding_nucleotides>
                  <number_encoded_amino_acids>613</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKLQSGVRHFSSAEAPSYTEVGMPALSPTMTQGNIAKWIKKEGDKIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEGFLAKILAPEGSKDVAVGQPIAIMVEDENDIEAVRTSISGNNVVKEEKPVSHDVTTEVRTQTTGFNRISPAAKSGKGSSNNSSVGKATPSPPQVNQQATPTKSLDLKSDGQQKDAYEDLPNSQIRKVIAARLLESKQSTPHLYLSTDVILDSLLSFRKELKEKYDVKVSVNDIVIKVVAATLRNVPGANAYWDDGKGEVVLCDSVDISVAVATEKGLMTPIIRNADQKSISSISAEIKELAGKARAGKLKPNEFQGGTFSISNLGMFPVDRFCAIINPPQAGIIAVGRGNKVVEPVVGADGIEKPAVVNKMSLTLSADHRVFDGKVGGAFVSALSSNFSDIKKLLL*</predicted_protein_sequence>
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        </three_phase_translation>
      </AGS_information>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90012" stop="89961"/>
              <exon start="89865" stop="89486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282395" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG : ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG : GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG : GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG : ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG : AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG : CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG : GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG : ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG : CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG : GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG : GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG : GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</gDNA_template>
            <first_frame> K  S  V  V  D  L  *  M  I  D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : A  T  K  W  C  S  A  L  L  V  S  * :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  F  L  T  D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  :  I  L  G  Q  N  T  G  T  *  R  F  K  R  C  G  C  W  A  A  Y  C  N  H   : G  *  G  *  K  *  Y  *  S  C  E  D  I  D  Q  R  Q  Q  C  G  *  G  R  K  A  G  Q  S  *  C  H  N  *  S  *  N  S  D  N  R  F  Q  *  N  Q  S  S  C  *  G  I  N  Y  G  T  W  F  R  C  I  I  N  S  S  I  W  S  S  W  Y  L  V  K  G  R  C  S  C  C  I  E  V  W  K  G  I  K  Q  Q  F  I  S  W  E  G  N  S  I  S  S  S  G  Q  P  T  S  Y  S  N  K  V  T  *  F  K  I  *  W  T  A  K  G  C  L  *  R  F  T  Q  *  S  N  S  Q   : G  D  S  S  K  V  I  G  I  *  A  I  Y  P  S  L  V  F  V  H  R :   C  Y  I  G  L  S  S  L  L  Q  K  G  A  *  R :   K  V  *  C  *  S  L  C  E  *  H  C  N  Q  S  G  C  S  N  I  K  K  C  T  R  S  K  C :   L  L  G  *  W  K  R  *  G  G  A  L  *  F  C  R  Y  I  C  C  G  C  H  *  K   : G  L  D  D  P  N  Y  Q  E  C  *  S  K  I  H  I  L  N  I  C  G   : D  Q  G  A  C  W  K  G  T  S  W  K  A  *  T  *  *  I  P  R  W  H  F  Q  :  H  F  K  L  G  H  V  S  S  G  S  V  L  C  N  Y  Q  P  S  S   : G  R  Y  N  C  C  W  *  G  Q  *  S  C  R  T  C  G  W  C  *  R :   N  *  E  T  S  C  C  *  Q  D  E  F  D  I  I  S  *  S  S  R  L  *  W  E  G  W  R :   C  V  R  F  S  I  V  I  *  L  Q  *  H  Q  E  A  S  T  L  I  R  M  K  C  L  G  T  K  Y  P  T  G  H  V  T  C  A  G  G  V  V  V  F  S  D  D  S  L  P  L  S  D  L  K  L  V  L  M  V  P  F  L  F  L  K  I  E  M  I  *  G  P  *  N  W  T  S  S  N  T  N  D  T  T  I  S  S  E  M  P  S  L  *  H  F  T  V  P  S  V  L  P  V  K  L  Y  N  R  G  A  S  I  F  F  T  K  *  K  A  D  F  F  L  S  C  S  Y  N  V  F  P  L  L  L  Q  T  M  *  Q  L  N  Q  I  S  F  V  *  S  P  K  E  N  Y  C  S  I  H  I  N  *  *  I  *  N  S  M  M  R  I  D  K   </first_frame>
            <second_frame>  K  A  W  W  I  C  E  *  S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  L  Q  S  G  V  R  H  F  S  S  A   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  S  *  Q  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G :   F  L  A  K  I  L  A  P  E  G  S  K  D  V  A  V  G  Q  P  I  A  I  M  :  V  E  D  E  N  D  I  E  A  V  R  T  S  I  S  G  N  N  V  V  K  E  E  K  P  V  S  H  D  V  T  T  E  V  R  T  Q  T  T  G  F  N  R  I  S  P  A  A  K  V  L  I  M  E  H  G  L  D  A  S  S  I  P  A  S  G  P  R  G  T  L  L  K  G  D  V  L  A  A  L  K  S  G  K  G  S  S  N  N  S  S  V  G  K  A  T  P  S  P  P  Q  V  N  Q  Q  A  T  P  T  K  S  L  D  L  K  S  D  G  Q  Q  K  D  A  Y  E  D  L  P  N  S  Q  I  R  K  :  V  I  A  A  R  L  L  E  S  K  Q  S  T  P  H  L  Y  L  S  T   : D  V  I  L  D  S  L  L  S  F  R  K  E  L  K   : E  K  Y  D  V  K  V  S  V  N  D  I  V  I  K  V  V  A  A  T  L  R  N  V  P  G  A  N   : A  Y  W  D  D  G  K  G  E  V  V  L  C  D  S  V  D  I  S  V  A  V  A  T  E  K  :  G  L  M  T  P  I  I  R  N  A  D  Q  K  S  I  S  S  I  S  A  E  :  I  K  E  L  A  G  K  A  R  A  G  K  L  K  P  N  E  F  Q  G  G  T  F  S :   I  S  N  L  G  M  F  P  V  D  R  F  C  A  I  I  N  P  P  Q  :  A  G  I  I  A  V  G  R  G  N  K  V  V  E  P  V  V  G  A  D   : G  I  E  K  P  A  V  V  N  K  M  S  L  T  L  S  A  D  H  R  V  F  D  G  K  V  G   : G  A  F  V  S  A  L  S  S  N  F  S  D  I  K  K  L  L  L  *  Y  G  *  S  V  W  E  Q  N  I  L  Q  D  M  S  P  V  Q  A  A  *  L  F  F  L  M  I  V  C  L  F  Q  I  S  S  L  Y  *  W  C  H  F  C  S  *  R  *  K  *  F  E  V  H  K  I  G  L  V  P  I  P  M  I  L  P  F  L  L  R  C  Q  V  Y  D  T  S  Q  F  H  L  F  S  L  *  S  C  T  I  G  V  P  Q  Y  F  L  P  N  K  K  L  I  F  S  S  L  A  H  I  M  F  F  L  Y  F  Y  R  P  C  N  S  *  T  K  F  L  L  F  N  H  Q  K  K  I  I  A  Q  Y  I  L  T  D  K  Y  K  T  Q  *  *  E  L  T  R  </second_frame>
            <third_frame>   K  R  G  G  S  V  N  D  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  S :   Y  K  V  V  F  G  T  S  R  Q  L  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  P  N  R  F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K   : D  S  W  P  K  Y  W  H  L  K  V  Q  K  M  W  L  L  G  S  L  L  Q  S  W :   L  R  M  K  M  I  L  K  L  *  G  H  R  S  A  A  T  M  W  L  R  K  K  S  R  S  V  M  M  S  Q  L  K  L  E  L  R  Q  Q  V  S  I  E  S  V  Q  L  L  R  Y  *  L  W  N  M  V  *  M  H  H  Q  F  Q  H  L  V  L  V  V  P  C  *  R  E  M  F  L  L  H  *  S  L  E  R  D  Q  A  T  I  H  Q  L  G  R  Q  L  H  L  L  L  R  S  T  N  K  L  L  Q  Q  S  H  L  I  *  N  L  M  D  S  K  R  M  L  M  K  I  Y  P  I  V  K  F  A  R :   *  *  Q  Q  G  Y  W  N  L  S  N  L  P  L  T  C  I  C  P  Q  :  M  L  Y  W  T  L  F  S  P  S  E  R  S  L  K  :  K  S  M  M  L  K  S  L  *  M  T  L  *  S  K  W  L  Q  Q  H  *  E  M  Y  Q  E  Q  M  :  L  T  G  M  M  E  K  V  R  W  C  F  V  I  L  S  I  Y  L  L  R  L  P  L  K  R :   A  *  *  P  Q  L  S  G  M  L  I  K  N  P  Y  P  Q  Y  L  R  R :   S  R  S  L  L  E  R  H  E  L  E  S  L  N  L  M  N  S  K  V  A  L  S   : A  F  Q  T  W  A  C  F  Q  W  I  G  F  V  Q  L  S  T  L  L  R :   P  V  *  L  L  L  V  G  A  I  K  L  S  N  L  W  L  V  L  T  :  E  L  R  N  Q  L  L  L  T  R  *  V  *  H  Y  Q  L  I  I  A  S  L  M  G  R  L  E  :  V  R  S  F  Q  H  C  H  L  T  S  V  T  S  R  S  F  Y  F  N  T  D  E  V  S  G  N  K  I  S  Y  R  T  C  H  L  C  R  R  R  S  C  F  F  *  *  *  F  A  S  F  R  S  Q  A  C  I  N  G  A  I  F  V  L  E  D  R  N  D  L  R  S  I  K  L  D  *  F  Q  Y  Q  *  Y  Y  H  F  F  *  D  A  K  F  M  T  L  H  S  S  I  C  S  P  C  K  V  V  Q  *  G  C  L  N  I  F  Y  Q  I  K  S  *  F  F  P  L  L  L  I  *  C  F  S  F  T  F  T  D  H  V  T  A  K  P  N  F  F  C  L  I  T  K  R  K  L  L  L  N  T  Y  *  L  I  N  I  K  L  N  D  E  N  *  Q  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100668" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96670"/>
                    <exon start="96231" stop="96162"/>
                    <exon start="95942" stop="95541"/>
                    <exon start="93878" stop="93818"/>
                    <exon start="93641" stop="93597"/>
                    <exon start="93512" stop="93429"/>
                    <exon start="91216" stop="91140"/>
                    <exon start="91068" stop="91006"/>
                    <exon start="90722" stop="90652"/>
                    <exon start="90569" stop="90509"/>
                    <exon start="90247" stop="90187"/>
                    <exon start="90041" stop="89961"/>
                    <exon start="89865" stop="89807"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1590</number_coding_nucleotides>
                  <number_encoded_amino_acids>530</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEGFLAKILAPEGSKDVAVGQPIAIMVEDENDIEAVRTSISGNNVVKEEKPVSHDVTTEVRTQTTGFNRISPAAKVLIMEHGLDASSIPASGPRGTLLKGDVLAALKSGKGSSNNSSVGKATPSPPQVNQQATPTKSLDLKSDGQQKDAYEDLPNSQIRKVIAARLLESKQSTPHLYLSTDVILDSLLSFRKELKEKYDVKVSVNDIVIKVVAATLRNVPGANAYWDDGKGEVVLCDSVDISVAVATEKGLMTPIIRNADQKSISSISAEIKELAGKARAGKLKPNEFQGGTFSISNLGMFPVDRFCAIINPPQAGIIAVGRGNKVVEPVVGADGIEKPAVVNKMSLTLSADHRVFDGKVGGAFVSALSSNFSDIKKLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="103411" stop="103378"/>
                    <exon start="100996" stop="100947"/>
                    <exon start="100846" stop="100802"/>
                    <exon start="100677" stop="100669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKLQSGVRHFSSAEAPSYTEVGMPALSPTMTQGNIAKWIKKEGDKIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="106622" e_stop="106504"/>
            <exon e_start="104830" e_stop="104780"/>
            <exon e_start="103536" e_stop="103488"/>
            <exon e_start="100996" e_stop="100947"/>
            <exon e_start="100846" e_stop="100802"/>
            <exon e_start="100677" e_stop="100592"/>
            <exon e_start="100350" e_stop="100281"/>
            <exon e_start="97191" e_stop="97000"/>
            <exon e_start="96900" e_stop="96856"/>
            <exon e_start="96743" e_stop="96670"/>
            <exon e_start="96231" e_stop="96162"/>
            <exon e_start="95942" e_stop="95541"/>
            <exon e_start="93878" e_stop="93818"/>
            <exon e_start="93641" e_stop="93597"/>
            <exon e_start="93512" e_stop="93429"/>
            <exon e_start="91216" e_stop="91140"/>
            <exon e_start="91068" e_stop="91006"/>
            <exon e_start="90722" e_stop="90652"/>
            <exon e_start="90569" e_stop="90509"/>
            <exon e_start="90247" e_stop="90187"/>
            <exon e_start="90041" e_stop="89961"/>
            <exon e_start="89865" e_stop="89350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.664" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.959"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.952" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="106622" e_stop="106504" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
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          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
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          <intron i_serial="15" don_prob="0.994" acc_prob="0.955">
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          <exon e_serial="17" e_score="1.000">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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              <exon start="97191" stop="97043"/>
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            <referenceDNA id="SGN-E214072" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E244809" strand="+"/>
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          <PGS_line>
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              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307470" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248460" strand="+"/>
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          <PGS_line>
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              <exon start="96733" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310210" strand="+"/>
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          <PGS_line>
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              <exon start="96727" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96727" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270675" strand="+"/>
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          <PGS_line>
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              <exon start="93641" stop="93597"/>
              <exon start="93512" stop="93479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249205" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="91216" stop="91140"/>
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              <exon start="90722" stop="90652"/>
              <exon start="90569" stop="90509"/>
              <exon start="90247" stop="90190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431275" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="91068" stop="91010"/>
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            <referenceDNA id="SGN-E463796" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="95610" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93597"/>
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              <exon start="89865" stop="89607"/>
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            <referenceDNA id="SGN-E739635" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="89865" stop="89482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431276" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91065" stop="91006"/>
              <exon start="90722" stop="90652"/>
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              <exon start="89865" stop="89476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91035" stop="91006"/>
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              <exon start="89865" stop="89477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91006"/>
              <exon start="90722" stop="90652"/>
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              <exon start="89865" stop="89364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433158" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90560" stop="90509"/>
              <exon start="90247" stop="90187"/>
              <exon start="90041" stop="89961"/>
              <exon start="89865" stop="89509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90012" stop="89961"/>
              <exon start="89865" stop="89486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282395" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTTCCTAACAGATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG : ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG : GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG : GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG : ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG : AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG : CTTACTGGGATGATGGAAAAGGTGAGGTGGTGCTTTGTGATTCTGTCGATATATCTGTTGCGGTTGCCACTGAAAAG : GGCTTGATGACCCCAATTATCAGGAATGCTGATCAAAAATCCATATCCTCAATATCTGCGGAG : ATCAAGGAGCTTGCTGGAAAGGCACGAGCTGGAAAGCTTAAACCTAATGAATTCCAAGGTGGCACTTTCAG : CATTTCAAACTTGGGCATGTTTCCAGTGGATCGGTTTTGTGCAATTATCAACCCTCCTCAG : GCCGGTATAATTGCTGTTGGTAGGGGCAATAAAGTTGTCGAACCTGTGGTTGGTGCTGACG : GAATTGAGAAACCAGCTGTTGTTAACAAGATGAGTTTGACATTATCAGCTGATCATCGCGTCTTTGATGGGAAGGTTGGAG : GTGCGTTCGTTTCAGCATTGTCATCTAACTTCAGTGACATCAAGAAGCTTCTACTTTAATACGGATGAAGTGTCTGGGAACAAAATATCCTACAGGACATGTCACCTGTGCAGGCGGCGTAGTTGTTTTTTCTGATGATAGTTTGCCTCTTTCAGATCTCAAGCTTGTATTAATGGTGCCATTTTTGTTCTTGAAGATAGAAATGATTTGAGGTCCATAAAATTGGACTAGTTCCAATACCAATGATACTACCATTTCTTCTGAGATGCCAAGTTTATGACACTTCACAGTTCCATCTGTTCTCCCTGTAAAGTTGTACAATAGGGGTGCCTCAATATTTTTTACCAAATAAAAAGCTGATTTTTTCCTCTCTTGCTCATATAATGTTTTTCCTTTACTTTTACAGACCATGTAACAGCTAAACCAAATTTCTTTTGTTTAATCACCAAAAGAAAATTATTGCTCAATACATATTAACTGATAAATATAAAACTCAATGATGAGAATTGACAAGGA</gDNA_template>
            <first_frame> S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  P  N  R  F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K   : D  S  W  P  K  Y  W  H  L  K  V  Q  K  M  W  L  L  G  S  L  L  Q  S  W :   L  R  M  K  M  I  L  K  L  *  G  H  R  S  A  A  T  M  W  L  R  K  K  S  R  S  V  M  M  S  Q  L  K  L  E  L  R  Q  Q  V  S  I  E  S  V  Q  L  L  R  Y  *  L  W  N  M  V  *  M  H  H  Q  F  Q  H  L  V  L  V  V  P  C  *  R  E  M  F  L  L  H  *  S  L  E  R  D  Q  A  T  I  H  Q  L  G  R  Q  L  H  L  L  L  R  S  T  N  K  L  L  Q  Q  S  H  L  I  *  N  L  M  D  S  K  R  M  L  M  K  I  Y  P  I  V  K  F  A  R :   *  *  Q  Q  G  Y  W  N  L  S  N  L  P  L  T  C  I  C  P  Q  :  M  L  Y  W  T  L  F  S  P  S  E  R  S  L  K  :  K  S  M  M  L  K  S  L  *  M  T  L  *  S  K  W  L  Q  Q  H  *  E  M  Y  Q  E  Q  M  :  L  T  G  M  M  E  K  V  R  W  C  F  V  I  L  S  I  Y  L  L  R  L  P  L  K  R :   A  *  *  P  Q  L  S  G  M  L  I  K  N  P  Y  P  Q  Y  L  R  R :   S  R  S  L  L  E  R  H  E  L  E  S  L  N  L  M  N  S  K  V  A  L  S   : A  F  Q  T  W  A  C  F  Q  W  I  G  F  V  Q  L  S  T  L  L  R :   P  V  *  L  L  L  V  G  A  I  K  L  S  N  L  W  L  V  L  T  :  E  L  R  N  Q  L  L  L  T  R  *  V  *  H  Y  Q  L  I  I  A  S  L  M  G  R  L  E  :  V  R  S  F  Q  H  C  H  L  T  S  V  T  S  R  S  F  Y  F  N  T  D  E  V  S  G  N  K  I  S  Y  R  T  C  H  L  C  R  R  R  S  C  F  F  *  *  *  F  A  S  F  R  S  Q  A  C  I  N  G  A  I  F  V  L  E  D  R  N  D  L  R  S  I  K  L  D  *  F  Q  Y  Q  *  Y  Y  H  F  F  *  D  A  K  F  M  T  L  H  S  S  I  C  S  P  C  K  V  V  Q  *  G  C  L  N  I  F  Y  Q  I  K  S  *  F  F  P  L  L  L  I  *  C  F  S  F  T  F  T  D  H  V  T  A  K  P  N  F  F  C  L  I  T  K  R  K  L  L  L  N  T  Y  *  L  I  N  I  K  L  N  D  E  N  *  Q  G </first_frame>
            <second_frame>  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  R :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  F  L  T  D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  :  I  L  G  Q  N  T  G  T  *  R  F  K  R  C  G  C  W  A  A  Y  C  N  H   : G  *  G  *  K  *  Y  *  S  C  E  D  I  D  Q  R  Q  Q  C  G  *  G  R  K  A  G  Q  S  *  C  H  N  *  S  *  N  S  D  N  R  F  Q  *  N  Q  S  S  C  *  G  I  N  Y  G  T  W  F  R  C  I  I  N  S  S  I  W  S  S  W  Y  L  V  K  G  R  C  S  C  C  I  E  V  W  K  G  I  K  Q  Q  F  I  S  W  E  G  N  S  I  S  S  S  G  Q  P  T  S  Y  S  N  K  V  T  *  F  K  I  *  W  T  A  K  G  C  L  *  R  F  T  Q  *  S  N  S  Q   : G  D  S  S  K  V  I  G  I  *  A  I  Y  P  S  L  V  F  V  H  R :   C  Y  I  G  L  S  S  L  L  Q  K  G  A  *  R :   K  V  *  C  *  S  L  C  E  *  H  C  N  Q  S  G  C  S  N  I  K  K  C  T  R  S  K  C :   L  L  G  *  W  K  R  *  G  G  A  L  *  F  C  R  Y  I  C  C  G  C  H  *  K   : G  L  D  D  P  N  Y  Q  E  C  *  S  K  I  H  I  L  N  I  C  G   : D  Q  G  A  C  W  K  G  T  S  W  K  A  *  T  *  *  I  P  R  W  H  F  Q  :  H  F  K  L  G  H  V  S  S  G  S  V  L  C  N  Y  Q  P  S  S   : G  R  Y  N  C  C  W  *  G  Q  *  S  C  R  T  C  G  W  C  *  R :   N  *  E  T  S  C  C  *  Q  D  E  F  D  I  I  S  *  S  S  R  L  *  W  E  G  W  R :   C  V  R  F  S  I  V  I  *  L  Q  *  H  Q  E  A  S  T  L  I  R  M  K  C  L  G  T  K  Y  P  T  G  H  V  T  C  A  G  G  V  V  V  F  S  D  D  S  L  P  L  S  D  L  K  L  V  L  M  V  P  F  L  F  L  K  I  E  M  I  *  G  P  *  N  W  T  S  S  N  T  N  D  T  T  I  S  S  E  M  P  S  L  *  H  F  T  V  P  S  V  L  P  V  K  L  Y  N  R  G  A  S  I  F  F  T  K  *  K  A  D  F  F  L  S  C  S  Y  N  V  F  P  L  L  L  Q  T  M  *  Q  L  N  Q  I  S  F  V  *  S  P  K  E  N  Y  C  S  I  H  I  N  *  *  I  *  N  S  M  M  R  I  D  K   </second_frame>
            <third_frame>   D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  S  *  Q  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G :   F  L  A  K  I  L  A  P  E  G  S  K  D  V  A  V  G  Q  P  I  A  I  M  :  V  E  D  E  N  D  I  E  A  V  R  T  S  I  S  G  N  N  V  V  K  E  E  K  P  V  S  H  D  V  T  T  E  V  R  T  Q  T  T  G  F  N  R  I  S  P  A  A  K  V  L  I  M  E  H  G  L  D  A  S  S  I  P  A  S  G  P  R  G  T  L  L  K  G  D  V  L  A  A  L  K  S  G  K  G  S  S  N  N  S  S  V  G  K  A  T  P  S  P  P  Q  V  N  Q  Q  A  T  P  T  K  S  L  D  L  K  S  D  G  Q  Q  K  D  A  Y  E  D  L  P  N  S  Q  I  R  K  :  V  I  A  A  R  L  L  E  S  K  Q  S  T  P  H  L  Y  L  S  T   : D  V  I  L  D  S  L  L  S  F  R  K  E  L  K   : E  K  Y  D  V  K  V  S  V  N  D  I  V  I  K  V  V  A  A  T  L  R  N  V  P  G  A  N   : A  Y  W  D  D  G  K  G  E  V  V  L  C  D  S  V  D  I  S  V  A  V  A  T  E  K  :  G  L  M  T  P  I  I  R  N  A  D  Q  K  S  I  S  S  I  S  A  E  :  I  K  E  L  A  G  K  A  R  A  G  K  L  K  P  N  E  F  Q  G  G  T  F  S :   I  S  N  L  G  M  F  P  V  D  R  F  C  A  I  I  N  P  P  Q  :  A  G  I  I  A  V  G  R  G  N  K  V  V  E  P  V  V  G  A  D   : G  I  E  K  P  A  V  V  N  K  M  S  L  T  L  S  A  D  H  R  V  F  D  G  K  V  G   : G  A  F  V  S  A  L  S  S  N  F  S  D  I  K  K  L  L  L  *  Y  G  *  S  V  W  E  Q  N  I  L  Q  D  M  S  P  V  Q  A  A  *  L  F  F  L  M  I  V  C  L  F  Q  I  S  S  L  Y  *  W  C  H  F  C  S  *  R  *  K  *  F  E  V  H  K  I  G  L  V  P  I  P  M  I  L  P  F  L  L  R  C  Q  V  Y  D  T  S  Q  F  H  L  F  S  L  *  S  C  T  I  G  V  P  Q  Y  F  L  P  N  K  K  L  I  F  S  S  L  A  H  I  M  F  F  L  Y  F  Y  R  P  C  N  S  *  T  K  F  L  L  F  N  H  Q  K  K  I  I  A  Q  Y  I  L  T  D  K  Y  K  T  Q  *  *  E  L  T  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100668" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96670"/>
                    <exon start="96231" stop="96162"/>
                    <exon start="95942" stop="95541"/>
                    <exon start="93878" stop="93818"/>
                    <exon start="93641" stop="93597"/>
                    <exon start="93512" stop="93429"/>
                    <exon start="91216" stop="91140"/>
                    <exon start="91068" stop="91006"/>
                    <exon start="90722" stop="90652"/>
                    <exon start="90569" stop="90509"/>
                    <exon start="90247" stop="90187"/>
                    <exon start="90041" stop="89961"/>
                    <exon start="89865" stop="89807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1590</number_coding_nucleotides>
                  <number_encoded_amino_acids>530</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEGFLAKILAPEGSKDVAVGQPIAIMVEDENDIEAVRTSISGNNVVKEEKPVSHDVTTEVRTQTTGFNRISPAAKVLIMEHGLDASSIPASGPRGTLLKGDVLAALKSGKGSSNNSSVGKATPSPPQVNQQATPTKSLDLKSDGQQKDAYEDLPNSQIRKVIAARLLESKQSTPHLYLSTDVILDSLLSFRKELKEKYDVKVSVNDIVIKVVAATLRNVPGANAYWDDGKGEVVLCDSVDISVAVATEKGLMTPIIRNADQKSISSISAEIKELAGKARAGKLKPNEFQGGTFSISNLGMFPVDRFCAIINPPQAGIIAVGRGNKVVEPVVGADGIEKPAVVNKMSLTLSADHRVFDGKVGGAFVSALSSNFSDIKKLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="100996" stop="100846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKRLLHIQRWECQLCPLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="106659" e_stop="106504"/>
            <exon e_start="104830" e_stop="104780"/>
            <exon e_start="103536" e_stop="103488"/>
            <exon e_start="103411" e_stop="103378"/>
            <exon e_start="100996" e_stop="100947"/>
            <exon e_start="100846" e_stop="100802"/>
            <exon e_start="100665" e_stop="100592"/>
            <exon e_start="100350" e_stop="100281"/>
            <exon e_start="97191" e_stop="97000"/>
            <exon e_start="96900" e_stop="96856"/>
            <exon e_start="96743" e_stop="96670"/>
            <exon e_start="96231" e_stop="96162"/>
            <exon e_start="95942" e_stop="95541"/>
            <exon e_start="93878" e_stop="93818"/>
            <exon e_start="93641" e_stop="93597"/>
            <exon e_start="93512" e_stop="93429"/>
            <exon e_start="93368" e_stop="93363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="0.988"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106659" e_stop="106504" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104830" e_stop="104780" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.664" acc_prob="0.719">
            <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103536" e_stop="103488" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103411" e_stop="103378" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100996" e_stop="100947" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100846" e_stop="100802" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100665" e_stop="100592" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100350" e_stop="100281" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97191" e_stop="97000" e_length="192"/>
          </exon>
          <intron i_serial="9" don_prob="0.940" acc_prob="0.963">
            <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96900" e_stop="96856" e_length="45"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="96743" e_stop="96670" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96669" i_stop="96232" i_length="438"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="96231" e_stop="96162" e_length="70"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96161" i_stop="95943" i_length="219"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="95942" e_stop="95541" e_length="402"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95540" i_stop="93879" i_length="1662"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="93878" e_stop="93818" e_length="61"/>
          </exon>
          <intron i_serial="14" don_prob="0.935" acc_prob="0.929">
            <gDNA_intron_boundary i_start="93817" i_stop="93642" i_length="176"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="93641" e_stop="93597" e_length="45"/>
          </exon>
          <intron i_serial="15" don_prob="0.988" acc_prob="0.956">
            <gDNA_intron_boundary i_start="93596" i_stop="93513" i_length="84"/>
          </intron>
          <exon e_serial="16" e_score="0.988">
            <gDNA_exon_boundary e_start="93512" e_stop="93429" e_length="84"/>
          </exon>
          <intron i_serial="16" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93428" i_stop="93369" i_length="60"/>
          </intron>
          <exon e_serial="17" e_score="0.500">
            <gDNA_exon_boundary e_start="93368" e_stop="93363" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106659" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106647" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106643" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106633" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106630" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106629" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103521" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100967" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100661" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100311" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97095" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96733" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96727" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96727" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96670"/>
              <exon start="96231" stop="96162"/>
              <exon start="95942" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93597"/>
              <exon start="93512" stop="93429"/>
              <exon start="93368" stop="93363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95877" stop="95541"/>
              <exon start="93878" stop="93818"/>
              <exon start="93641" stop="93597"/>
              <exon start="93512" stop="93479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGG : ATTCTTGGCCAAAATACTGGCACCTGAAGGTTCAAAAGATGTGGCTGTTGGGCAGCCTATTGCAATCATG : GTTGAGGATGAAAATGATATTGAAGCTGTGAGGACATCGATCAGCGGCAACAATGTGGTTAAGGAAGAAAAGCCGGTCAGTCATGATGTCACAACTGAAGTTAGAACTCAGACAACAGGTTTCAATAGAATCAGTCCAGCTGCTAAGGTATTAATTATGGAACATGGTTTAGATGCATCATCAATTCCAGCATCTGGTCCTCGTGGTACCTTGTTAAAGGGAGATGTTCTTGCTGCATTGAAGTCTGGAAAGGGATCAAGCAACAATTCATCAGTTGGGAAGGCAACTCCATCTCCTCCTCAGGTCAACCAACAAGCTACTCCAACAAAGTCACTTGATTTAAAATCTGATGGACAGCAAAAGGATGCTTATGAAGATTTACCCAATAGTCAAATTCGCAAG : GTGATAGCAGCAAGGTTATTGGAATCTAAGCAATCTACCCCTCACTTGTATTTGTCCACAG : ATGTTATATTGGACTCTCTTCTCTCCTTCAGAAAGGAGCTTAAAG : AAAAGTATGATGTTAAAGTCTCTGTGAATGACATTGTAATCAAAGTGGTTGCAGCAACATTAAGAAATGTACCAGGAGCAAATG : CTAAAA</gDNA_template>
            <first_frame> V  E  E  S  K  S  V  V  D  L  *  M  I  D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : A  T  K  W  C  S  A  L  L  V  S  * :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  :  I  L  G  Q  N  T  G  T  *  R  F  K  R  C  G  C  W  A  A  Y  C  N  H   : G  *  G  *  K  *  Y  *  S  C  E  D  I  D  Q  R  Q  Q  C  G  *  G  R  K  A  G  Q  S  *  C  H  N  *  S  *  N  S  D  N  R  F  Q  *  N  Q  S  S  C  *  G  I  N  Y  G  T  W  F  R  C  I  I  N  S  S  I  W  S  S  W  Y  L  V  K  G  R  C  S  C  C  I  E  V  W  K  G  I  K  Q  Q  F  I  S  W  E  G  N  S  I  S  S  S  G  Q  P  T  S  Y  S  N  K  V  T  *  F  K  I  *  W  T  A  K  G  C  L  *  R  F  T  Q  *  S  N  S  Q   : G  D  S  S  K  V  I  G  I  *  A  I  Y  P  S  L  V  F  V  H  R :   C  Y  I  G  L  S  S  L  L  Q  K  G  A  *  R :   K  V  *  C  *  S  L  C  E  *  H  C  N  Q  S  G  C  S  N  I  K  K  C  T  R  S  K  C :   *   </first_frame>
            <second_frame>  L  K  K  A  K  A  W  W  I  C  E  *  S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  L  Q  S  G  V  R  H  F  S  S  A   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G :   F  L  A  K  I  L  A  P  E  G  S  K  D  V  A  V  G  Q  P  I  A  I  M  :  V  E  D  E  N  D  I  E  A  V  R  T  S  I  S  G  N  N  V  V  K  E  E  K  P  V  S  H  D  V  T  T  E  V  R  T  Q  T  T  G  F  N  R  I  S  P  A  A  K  V  L  I  M  E  H  G  L  D  A  S  S  I  P  A  S  G  P  R  G  T  L  L  K  G  D  V  L  A  A  L  K  S  G  K  G  S  S  N  N  S  S  V  G  K  A  T  P  S  P  P  Q  V  N  Q  Q  A  T  P  T  K  S  L  D  L  K  S  D  G  Q  Q  K  D  A  Y  E  D  L  P  N  S  Q  I  R  K  :  V  I  A  A  R  L  L  E  S  K  Q  S  T  P  H  L  Y  L  S  T   : D  V  I  L  D  S  L  L  S  F  R  K  E  L  K   : E  K  Y  D  V  K  V  S  V  N  D  I  V  I  K  V  V  A  A  T  L  R  N  V  P  G  A  N   : A  K  </second_frame>
            <third_frame>   *  R  K  Q  K  R  G  G  S  V  N  D  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  S :   Y  K  V  V  F  G  T  S  R  Q  L  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K   : D  S  W  P  K  Y  W  H  L  K  V  Q  K  M  W  L  L  G  S  L  L  Q  S  W :   L  R  M  K  M  I  L  K  L  *  G  H  R  S  A  A  T  M  W  L  R  K  K  S  R  S  V  M  M  S  Q  L  K  L  E  L  R  Q  Q  V  S  I  E  S  V  Q  L  L  R  Y  *  L  W  N  M  V  *  M  H  H  Q  F  Q  H  L  V  L  V  V  P  C  *  R  E  M  F  L  L  H  *  S  L  E  R  D  Q  A  T  I  H  Q  L  G  R  Q  L  H  L  L  L  R  S  T  N  K  L  L  Q  Q  S  H  L  I  *  N  L  M  D  S  K  R  M  L  M  K  I  Y  P  I  V  K  F  A  R :   *  *  Q  Q  G  Y  W  N  L  S  N  L  P  L  T  C  I  C  P  Q  :  M  L  Y  W  T  L  F  S  P  S  E  R  S  L  K  :  K  S  M  M  L  K  S  L  *  M  T  L  *  S  K  W  L  Q  Q  H  *  E  M  Y  Q  E  Q  M  :  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="103411" stop="103378"/>
                    <exon start="100996" stop="100947"/>
                    <exon start="100846" stop="100802"/>
                    <exon start="100665" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96670"/>
                    <exon start="96231" stop="96162"/>
                    <exon start="95942" stop="95541"/>
                    <exon start="93878" stop="93818"/>
                    <exon start="93641" stop="93597"/>
                    <exon start="93512" stop="93429"/>
                    <exon start="93368" stop="93364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1470</number_coding_nucleotides>
                  <number_encoded_amino_acids>490</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKLQSGVRHFSSAEAPSYTEVGMPALSPTMTQGNIAKWIKKEGDKIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEGFLAKILAPEGSKDVAVGQPIAIMVEDENDIEAVRTSISGNNVVKEEKPVSHDVTTEVRTQTTGFNRISPAAKVLIMEHGLDASSIPASGPRGTLLKGDVLAALKSGKGSSNNSSVGKATPSPPQVNQQATPTKSLDLKSDGQQKDAYEDLPNSQIRKVIAARLLESKQSTPHLYLSTDVILDSLLSFRKELKEKYDVKVSVNDIVIKVVAATLRNVPGANAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="106659" e_stop="106504"/>
            <exon e_start="104830" e_stop="104780"/>
            <exon e_start="103536" e_stop="103488"/>
            <exon e_start="103411" e_stop="103378"/>
            <exon e_start="100996" e_stop="100947"/>
            <exon e_start="100846" e_stop="100802"/>
            <exon e_start="100665" e_stop="100592"/>
            <exon e_start="100350" e_stop="100281"/>
            <exon e_start="97191" e_stop="97000"/>
            <exon e_start="96900" e_stop="96856"/>
            <exon e_start="96743" e_stop="96508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.664" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106659" e_stop="106504" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106503" i_stop="104831" i_length="1673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104830" e_stop="104780" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.664" acc_prob="0.719">
            <gDNA_intron_boundary i_start="104779" i_stop="103537" i_length="1243"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103536" e_stop="103488" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103487" i_stop="103412" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103411" e_stop="103378" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103377" i_stop="100997" i_length="2381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100996" e_stop="100947" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100946" i_stop="100847" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100846" e_stop="100802" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100801" i_stop="100666" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100665" e_stop="100592" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100591" i_stop="100351" i_length="241"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="100350" e_stop="100281" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100280" i_stop="97192" i_length="3089"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="97191" e_stop="97000" e_length="192"/>
          </exon>
          <intron i_serial="9" don_prob="0.940" acc_prob="0.963">
            <gDNA_intron_boundary i_start="96999" i_stop="96901" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96900" e_stop="96856" e_length="45"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96855" i_stop="96744" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="0.996">
            <gDNA_exon_boundary e_start="96743" e_stop="96508" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106659" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106647" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106643" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106633" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106630" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106629" stop="106504"/>
              <exon start="104830" stop="104780"/>
              <exon start="103536" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103521" stop="103488"/>
              <exon start="103411" stop="103378"/>
              <exon start="100996" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100994" stop="100947"/>
              <exon start="100846" stop="100802"/>
              <exon start="100665" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100661" stop="100592"/>
              <exon start="100350" stop="100281"/>
              <exon start="97191" stop="97000"/>
              <exon start="96900" stop="96856"/>
              <exon start="96743" stop="96674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244809" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAAGAAAGCAAAAGCGTGGTGGATCTGTGAATGATCGATGGCGCTCTCTCGACTTCGTCATCCGTTGATTTTCCGAGCTCCGTCGCTACTCCGAGCTCGCCGTCTTCTCGCCGCCGGTCCTTGTAACTCCTCCACACTCCGATCGCTCCATCA : TGTTCCTGGGGTGCTGAATCAAATTCCTGATGTGGATGCTTCTTCATTAAG : GCTTTTAAATTTCCGCCTGCTCAGTGAAGTACATGTCGTACCATCTAAG : CTACAAAGTGGTGTTCGGCACTTCTCGTCAGCTG : AGGCTCCTTCATATACAGAGGTGGGAATGCCAGCTTTGTCCCCTACAATG : ACTCAAGGTAATATAGCAAAATGGATAAAGAAAGAGGGGGACAAG : ATTCAAGCAGGGGATGTACTATGTTTGATAGAGACTGATAAAGCAACGCTTGAGTTTGAAACTCTTGAAGAAGG : TTTCCTTGCAAAGATATTGGTCCCTGAAGGAACAAAAGATGTACCGGTGGGACAGACTATAGCAATTACG : GTGGAAGAAGCAGATGACATACAAAAAGTCCCTGCTACCGTTGGTGGTGCATCAGAGGTTAAAAATCAAGCATCTTCTCAGACAGATGCAGCAAGGGGAGATGGGGCTACAGAAGTGAGTCCTGCGAATATCAGCTCATCTGAACTTCCTCCACATCTGATCCTTGATATGCCAGCTTTGTCCCCAACCATG : AACCAAGGTAACATTTTTAAATGGAGGAAAAAGGAAGGTGACAAG : ATAGAGGTTGGTGATGTTCTCTGTGAGATAGAAACTGACAAAGCAACTCTTGAGCATGAAAGTCTTGAAGAAGGGTAAACTTTCCCATTACATTTTAAATAAGATGTTTAATTGCAAGAAAATAAGATACTGTTAGAGATTATAACTATTACTATTTTTTACTGTACTTTCTATAAGGTAATTATTTCTTAGGACTTTCTAGTTATCCAGAAAAGCAGCCTCAAAATATTGAAGGA</gDNA_template>
            <first_frame> V  E  E  S  K  S  V  V  D  L  *  M  I  D  G  A  L  S  T  S  S  S  V  D  F  P  S  S  V  A  T  P  S  S  P  S  S  R  R  R  S  L  *  L  L  H  T  P  I  A  P  S  :  C  S  W  G  A  E  S  N  S  *  C  G  C  F  F  I  K  :  A  F  K  F  P  P  A  Q  *  S  T  C  R  T  I  *   : A  T  K  W  C  S  A  L  L  V  S  * :   G  S  F  I  Y  R  G  G  N  A  S  F  V  P  Y  N   : D  S  R  *  Y  S  K  M  D  K  E  R  G  G  Q   : D  S  S  R  G  C  T  M  F  D  R  D  *  *  S  N  A  *  V  *  N  S  *  R  R  :  F  P  C  K  D  I  G  P  *  R  N  K  R  C  T  G  G  T  D  Y  S  N  Y   : G  G  R  S  R  *  H  T  K  S  P  C  Y  R  W  W  C  I  R  G  *  K  S  S  I  F  S  D  R  C  S  K  G  R  W  G  Y  R  S  E  S  C  E  Y  Q  L  I  *  T  S  S  T  S  D  P  *  Y  A  S  F  V  P  N  H   : E  P  R  *  H  F  *  M  E  E  K  G  R  *  Q   : D  R  G  W  *  C  S  L  *  D  R  N  *  Q  S  N  S  *  A  *  K  S  *  R  R  V  N  F  P  I  T  F  *  I  R  C  L  I  A  R  K  *  D  T  V  R  D  Y  N  Y  Y  Y  F  L  L  Y  F  L  *  G  N  Y  F  L  G  L  S  S  Y  P  E  K  Q  P  Q  N  I  E  G </first_frame>
            <second_frame>  L  K  K  A  K  A  W  W  I  C  E  *  S  M  A  L  S  R  L  R  H  P  L  I  F  R  A  P  S  L  L  R  A  R  R  L  L  A  A  G  P  C  N  S  S  T  L  R  S  L  H  H :   V  P  G  V  L  N  Q  I  P  D  V  D  A  S  S  L  R :   L  L  N  F  R  L  L  S  E  V  H  V  V  P  S  K  :  L  Q  S  G  V  R  H  F  S  S  A   : E  A  P  S  Y  T  E  V  G  M  P  A  L  S  P  T  M  :  T  Q  G  N  I  A  K  W  I  K  K  E  G  D  K  :  I  Q  A  G  D  V  L  C  L  I  E  T  D  K  A  T  L  E  F  E  T  L  E  E  G :   F  L  A  K  I  L  V  P  E  G  T  K  D  V  P  V  G  Q  T  I  A  I  T  :  V  E  E  A  D  D  I  Q  K  V  P  A  T  V  G  G  A  S  E  V  K  N  Q  A  S  S  Q  T  D  A  A  R  G  D  G  A  T  E  V  S  P  A  N  I  S  S  S  E  L  P  P  H  L  I  L  D  M  P  A  L  S  P  T  M  :  N  Q  G  N  I  F  K  W  R  K  K  E  G  D  K  :  I  E  V  G  D  V  L  C  E  I  E  T  D  K  A  T  L  E  H  E  S  L  E  E  G  *  T  F  P  L  H  F  K  *  D  V  *  L  Q  E  N  K  I  L  L  E  I  I  T  I  T  I  F  Y  C  T  F  Y  K  V  I  I  S  *  D  F  L  V  I  Q  K  S  S  L  K  I  L  K   </second_frame>
            <third_frame>   *  R  K  Q  K  R  G  G  S  V  N  D  R  W  R  S  L  D  F  V  I  R  *  F  S  E  L  R  R  Y  S  E  L  A  V  F  S  P  P  V  L  V  T  P  P  H  S  D  R  S  I   : M  F  L  G  C  *  I  K  F  L  M  W  M  L  L  H  *   : G  F  *  I  S  A  C  S  V  K  Y  M  S  Y  H  L  S :   Y  K  V  V  F  G  T  S  R  Q  L  :  R  L  L  H  I  Q  R  W  E  C  Q  L  C  P  L  Q  * :   L  K  V  I  *  Q  N  G  *  R  K  R  G  T  R :   F  K  Q  G  M  Y  Y  V  *  *  R  L  I  K  Q  R  L  S  L  K  L  L  K  K   : V  S  L  Q  R  Y  W  S  L  K  E  Q  K  M  Y  R  W  D  R  L  *  Q  L  R :   W  K  K  Q  M  T  Y  K  K  S  L  L  P  L  V  V  H  Q  R  L  K  I  K  H  L  L  R  Q  M  Q  Q  G  E  M  G  L  Q  K  *  V  L  R  I  S  A  H  L  N  F  L  H  I  *  S  L  I  C  Q  L  C  P  Q  P  * :   T  K  V  T  F  L  N  G  G  K  R  K  V  T  R :   *  R  L  V  M  F  S  V  R  *  K  L  T  K  Q  L  L  S  M  K  V  L  K  K  G  K  L  S  H  Y  I  L  N  K  M  F  N  C  K  K  I  R  Y  C  *  R  L  *  L  L  L  F  F  T  V  L  S  I  R  *  L  F  L  R  T  F  *  L  S  R  K  A  A  S  K  Y  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106622" stop="106504"/>
                    <exon start="104830" stop="104780"/>
                    <exon start="103536" stop="103488"/>
                    <exon start="103411" stop="103378"/>
                    <exon start="100996" stop="100947"/>
                    <exon start="100846" stop="100802"/>
                    <exon start="100665" stop="100592"/>
                    <exon start="100350" stop="100281"/>
                    <exon start="97191" stop="97000"/>
                    <exon start="96900" stop="96856"/>
                    <exon start="96743" stop="96666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMALSRLRHPLIFRAPSLLRARRLLAAGPCNSSTLRSLHHVPGVLNQIPDVDASSLRLLNFRLLSEVHVVPSKLQSGVRHFSSAEAPSYTEVGMPALSPTMTQGNIAKWIKKEGDKIQAGDVLCLIETDKATLEFETLEEGFLAKILVPEGTKDVPVGQTIAITVEEADDIQKVPATVGGASEVKNQASSQTDAARGDGATEVSPANISSSELPPHLILDMPALSPTMNQGNIFKWRKKEGDKIEVGDVLCEIETDKATLEHESLEEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="111939" PGL_stop="106697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111939" e_stop="111530"/>
            <exon e_start="111435" e_stop="111368"/>
            <exon e_start="111023" e_stop="110868"/>
            <exon e_start="110490" e_stop="110284"/>
            <exon e_start="109542" e_stop="109363"/>
            <exon e_start="109092" e_stop="108774"/>
            <exon e_start="106714" e_stop="106697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.567" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111939" e_stop="111530" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.567" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111529" i_stop="111436" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111435" e_stop="111368" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111367" i_stop="111024" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111023" e_stop="110868" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110867" i_stop="110491" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110490" e_stop="110284" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110283" i_stop="109543" i_length="741"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109542" e_stop="109363" e_length="180"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="109362" i_stop="109093" i_length="270"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109092" e_stop="108774" e_length="319"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108773" i_stop="106715" i_length="2059"/>
          </intron>
          <exon e_serial="7" e_score="0.722">
            <gDNA_exon_boundary e_start="106714" e_stop="106697" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110868"/>
              <exon start="110490" stop="110410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111939" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110868"/>
              <exon start="110490" stop="110446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111785" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110868"/>
              <exon start="110490" stop="110471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111785" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111784" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111784" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111784" stop="111530"/>
              <exon start="111435" stop="111373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111742" stop="111530"/>
              <exon start="111435" stop="111368"/>
              <exon start="111023" stop="110868"/>
              <exon start="110490" stop="110284"/>
              <exon start="109542" stop="109510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111400" stop="111368"/>
              <exon start="111023" stop="110868"/>
              <exon start="110490" stop="110284"/>
              <exon start="109542" stop="109426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110929" stop="110868"/>
              <exon start="110490" stop="110284"/>
              <exon start="109542" stop="109363"/>
              <exon start="109092" stop="108806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110489" stop="110284"/>
              <exon start="109542" stop="109363"/>
              <exon start="109092" stop="108774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109386" stop="109363"/>
              <exon start="109092" stop="108774"/>
              <exon start="106714" stop="106697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATTGTAATGTAGACCGTCTTCCTGATGAATACGAAAAATTCCGACTCCAACCCTACTTCCATTAGAAAATTGATAAACCTTTTGTGTAATTTTTTTGTTATATATAACTCAACATTGTTAAGCCTAAAATTATGGACAAAACTTGTTGCAGTTCAATAAAAAATGGCTGCAAAACAAGTTGTCCTTCTATTTACTCTTATATTGGCTTTGGGATTTATCCCTTTTCTTGTATTTTCTGCACAAGCAATTCCATTTGAAAGATTTGAATCTTTAAGAGTTGTCAAAAAAGTTAATAAAAATGGTCCTTTTCTTGGACTTATCACAGTGTATGCACCAGAAGAAGAAGCTTTCTTTAAAACTGGTGTTTTTAGGCCTGATCCTAGACACCCCTTTGTTGACTTATCAG : GTAGACGATTTCGAATTGGGAAAGTTGAGGGCAAAAAAGTCATTTATGTGAAATGTGGAGTTGGATTG : GTGAATGCAGCAGCAGCAACACAACAGATGTTGGACTTGTTTGACATAAAAGGGATAATTCATTTTGGCATCTCTGGTAATGCTAACAGTTCTATGCAAATTGGAGATGTCACAATCCCAGGGCAGCTTGCACAAGCAGGGCTTTGGGATTGGCTG : AAACCAAATGCAACTATGGAACCAAATGATTTTGCTCAATTTAATTTCAAGAGCTACAATGATCCTAAAGGAGGGGAAAATCAGTTGGGAAAAGTAGGATATAGCACTGAACAGTTTTACTCAGTTGCAGGGGAAGTCAATGTGCCTCAAAGACCAGTTTGGTTTAACATAACCAACAATTGGCTTCATTTAGCCTCTCATTTGCAT : GGGATAAATCTTGATCAATGTGCAAATTCAACGTTGTGTCTACCAGAAAAGCCAAAACTAGTTGTTGGATTGAAGGGAGCTACTTCAAATTTTTTCATTGACAATGCAGCTTACACACAATTCCTTTTCAATACTTTTGGTGTCACATCACTTGACATGGAAAGTTCAGCTGTAGTAATG : ACATGTTTGTCAAATGGATATCCAGTTATTGCAATTCGTGGATTATCGGATTTAGCAGGAACACAAAAAGGGGATAACACAATAAGATTATTTGGCTCTTTAGCTGCTCTAAATACAGCAAAAGTTGTAATTGATTTTGTTAAGTCACTCCCGATAAATCACGTTTCGCAATTCTAGCTAAAATATTATCGGAGATGAATTTAGAGCAGGTTCTATAAGTTTCAACTAAACTTATTAATATTGCTCCAATTATGTATTTGTACGCATAAAAATATTTCAATGTATACGTATAATAAGATCACACGCTTATTATGAATCA : CGAAAAAAAAAAAGAGGA</gDNA_template>
            <first_frame> K  N  C  N  V  D  R  L  P  D  E  Y  E  K  F  R  L  Q  P  Y  F  H  *  K  I  D  K  P  F  V  *  F  F  C  Y  I  *  L  N  I  V  K  P  K  I  M  D  K  T  C  C  S  S  I  K  N  G  C  K  T  S  C  P  S  I  Y  S  Y  I  G  F  G  I  Y  P  F  S  C  I  F  C  T  S  N  S  I  *  K  I  *  I  F  K  S  C  Q  K  S  *  *  K  W  S  F  S  W  T  Y  H  S  V  C  T  R  R  R  S  F  L  *  N  W  C  F  *  A  *  S  *  T  P  L  C  *  L  I  R :   *  T  I  S  N  W  E  S  *  G  Q  K  S  H  L  C  E  M  W  S  W  I   : G  E  C  S  S  S  N  T  T  D  V  G  L  V  *  H  K  R  D  N  S  F  W  H  L  W  *  C  *  Q  F  Y  A  N  W  R  C  H  N  P  R  A  A  C  T  S  R  A  L  G  L  A   : E  T  K  C  N  Y  G  T  K  *  F  C  S  I  *  F  Q  E  L  Q  *  S  *  R  R  G  K  S  V  G  K  S  R  I  *  H  *  T  V  L  L  S  C  R  G  S  Q  C  A  S  K  T  S  L  V  *  H  N  Q  Q  L  A  S  F  S  L  S  F  A   : W  D  K  S  *  S  M  C  K  F  N  V  V  S  T  R  K  A  K  T  S  C  W  I  E  G  S  Y  F  K  F  F  H  *  Q  C  S  L  H  T  I  P  F  Q  Y  F  W  C  H  I  T  *  H  G  K  F  S  C  S  N   : D  M  F  V  K  W  I  S  S  Y  C  N  S  W  I  I  G  F  S  R  N  T  K  R  G  *  H  N  K  I  I  W  L  F  S  C  S  K  Y  S  K  S  C  N  *  F  C  *  V  T  P  D  K  S  R  F  A  I  L  A  K  I  L  S  E  M  N  L  E  Q  V  L  *  V  S  T  K  L  I  N  I  A  P  I  M  Y  L  Y  A  *  K  Y  F  N  V  Y  V  *  *  D  H  T  L  I  M  N  H :   E  K  K  K  E   </first_frame>
            <second_frame>  K  I  V  M  *  T  V  F  L  M  N  T  K  N  S  D  S  N  P  T  S  I  R  K  L  I  N  L  L  C  N  F  F  V  I  Y  N  S  T  L  L  S  L  K  L  W  T  K  L  V  A  V  Q  *  K  M  A  A  K  Q  V  V  L  L  F  T  L  I  L  A  L  G  F  I  P  F  L  V  F  S  A  Q  A  I  P  F  E  R  F  E  S  L  R  V  V  K  K  V  N  K  N  G  P  F  L  G  L  I  T  V  Y  A  P  E  E  E  A  F  F  K  T  G  V  F  R  P  D  P  R  H  P  F  V  D  L  S   : G  R  R  F  R  I  G  K  V  E  G  K  K  V  I  Y  V  K  C  G  V  G  L  :  V  N  A  A  A  A  T  Q  Q  M  L  D  L  F  D  I  K  G  I  I  H  F  G  I  S  G  N  A  N  S  S  M  Q  I  G  D  V  T  I  P  G  Q  L  A  Q  A  G  L  W  D  W  L  :  K  P  N  A  T  M  E  P  N  D  F  A  Q  F  N  F  K  S  Y  N  D  P  K  G  G  E  N  Q  L  G  K  V  G  Y  S  T  E  Q  F  Y  S  V  A  G  E  V  N  V  P  Q  R  P  V  W  F  N  I  T  N  N  W  L  H  L  A  S  H  L  H  :  G  I  N  L  D  Q  C  A  N  S  T  L  C  L  P  E  K  P  K  L  V  V  G  L  K  G  A  T  S  N  F  F  I  D  N  A  A  Y  T  Q  F  L  F  N  T  F  G  V  T  S  L  D  M  E  S  S  A  V  V  M  :  T  C  L  S  N  G  Y  P  V  I  A  I  R  G  L  S  D  L  A  G  T  Q  K  G  D  N  T  I  R  L  F  G  S  L  A  A  L  N  T  A  K  V  V  I  D  F  V  K  S  L  P  I  N  H  V  S  Q  F  *  L  K  Y  Y  R  R  *  I  *  S  R  F  Y  K  F  Q  L  N  L  L  I  L  L  Q  L  C  I  C  T  H  K  N  I  S  M  Y  T  Y  N  K  I  T  R  L  L  *  I   : T  K  K  K  K  R  </second_frame>
            <third_frame>   K  L  *  C  R  P  S  S  *  *  I  R  K  I  P  T  P  T  L  L  P  L  E  N  *  *  T  F  C  V  I  F  L  L  Y  I  T  Q  H  C  *  A  *  N  Y  G  Q  N  L  L  Q  F  N  K  K  W  L  Q  N  K  L  S  F  Y  L  L  L  Y  W  L  W  D  L  S  L  F  L  Y  F  L  H  K  Q  F  H  L  K  D  L  N  L  *  E  L  S  K  K  L  I  K  M  V  L  F  L  D  L  S  Q  C  M  H  Q  K  K  K  L  S  L  K  L  V  F  L  G  L  I  L  D  T  P  L  L  T  Y  Q  :  V  D  D  F  E  L  G  K  L  R  A  K  K  S  F  M  *  N  V  E  L  D  W :   *  M  Q  Q  Q  Q  H  N  R  C  W  T  C  L  T  *  K  G  *  F  I  L  A  S  L  V  M  L  T  V  L  C  K  L  E  M  S  Q  S  Q  G  S  L  H  K  Q  G  F  G  I  G  * :   N  Q  M  Q  L  W  N  Q  M  I  L  L  N  L  I  S  R  A  T  M  I  L  K  E  G  K  I  S  W  E  K  *  D  I  A  L  N  S  F  T  Q  L  Q  G  K  S  M  C  L  K  D  Q  F  G  L  T  *  P  T  I  G  F  I  *  P  L  I  C  M :   G  *  I  L  I  N  V  Q  I  Q  R  C  V  Y  Q  K  S  Q  N  *  L  L  D  *  R  E  L  L  Q  I  F  S  L  T  M  Q  L  T  H  N  S  F  S  I  L  L  V  S  H  H  L  T  W  K  V  Q  L  *  *  * :   H  V  C  Q  M  D  I  Q  L  L  Q  F  V  D  Y  R  I  *  Q  E  H  K  K  G  I  T  Q  *  D  Y  L  A  L  *  L  L  *  I  Q  Q  K  L  *  L  I  L  L  S  H  S  R  *  I  T  F  R  N  S  S  *  N  I  I  G  D  E  F  R  A  G  S  I  S  F  N  *  T  Y  *  Y  C  S  N  Y  V  F  V  R  I  K  I  F  Q  C  I  R  I  I  R  S  H  A  Y  Y  E  S  :  R  K  K  K  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111776" stop="111530"/>
                    <exon start="111435" stop="111368"/>
                    <exon start="111023" stop="110868"/>
                    <exon start="110490" stop="110284"/>
                    <exon start="109542" stop="109363"/>
                    <exon start="109092" stop="108916"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAAKQVVLLFTLILALGFIPFLVFSAQAIPFERFESLRVVKKVNKNGPFLGLITVYAPEEEAFFKTGVFRPDPRHPFVDLSGRRFRIGKVEGKKVIYVKCGVGLVNAAAATQQMLDLFDIKGIIHFGISGNANSSMQIGDVTIPGQLAQAGLWDWLKPNATMEPNDFAQFNFKSYNDPKGGENQLGKVGYSTEQFYSVAGEVNVPQRPVWFNITNNWLHLASHLHGINLDQCANSTLCLPEKPKLVVGLKGATSNFFIDNAAYTQFLFNTFGVTSLDMESSAVVMTCLSNGYPVIAIRGLSDLAGTQKGDNTIRLFGSLAALNTAKVVIDFVKSLPINHVSQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="113715" PGL_stop="118410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113715" e_stop="113915"/>
            <exon e_start="115069" e_stop="115221"/>
            <exon e_start="115307" e_stop="115422"/>
            <exon e_start="115605" e_stop="115696"/>
            <exon e_start="116097" e_stop="116118"/>
            <exon e_start="116187" e_stop="116255"/>
            <exon e_start="117818" e_stop="117916"/>
            <exon e_start="118028" e_stop="118410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.379" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113715" e_stop="113915" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.379" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113916" i_stop="115068" i_length="1153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115069" e_stop="115221" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115222" i_stop="115306" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115307" e_stop="115422" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.995">
            <gDNA_intron_boundary i_start="115423" i_stop="115604" i_length="182"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115605" e_stop="115696" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115697" i_stop="116096" i_length="400"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116097" e_stop="116118" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.991">
            <gDNA_intron_boundary i_start="116119" i_stop="116186" i_length="68"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116187" e_stop="116255" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116256" i_stop="117817" i_length="1562"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="117818" e_stop="117916" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117917" i_stop="118027" i_length="111"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="118028" e_stop="118410" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113715" stop="113915"/>
              <exon start="115069" stop="115221"/>
              <exon start="115307" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117916"/>
              <exon start="118028" stop="118053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113716" stop="113915"/>
              <exon start="115069" stop="115169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113722" stop="113915"/>
              <exon start="115069" stop="115221"/>
              <exon start="115307" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113722" stop="113915"/>
              <exon start="115069" stop="115221"/>
              <exon start="115307" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113722" stop="113915"/>
              <exon start="115069" stop="115221"/>
              <exon start="115307" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113845" stop="113915"/>
              <exon start="115069" stop="115221"/>
              <exon start="115307" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115343" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117916"/>
              <exon start="118028" stop="118410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115390" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117916"/>
              <exon start="118028" stop="118189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115390" stop="115422"/>
              <exon start="115605" stop="115696"/>
              <exon start="116097" stop="116118"/>
              <exon start="116187" stop="116255"/>
              <exon start="117818" stop="117916"/>
              <exon start="118028" stop="118188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCGATCTCAACTCGACGAGCATTAGCAGCTTACCGCAACATCTATGGTGCATTACGGGCTACCAATTTCACTGCAAATCGTTTGATAGGCTCCACTTTGAGTCCAATTCGCTATGAAACTGTTCCCTGTTCGCTGGAGCAGACCACCAATTTTCTGCTTGAAAGTCGGAGGAGTTTTGCTAAAGGAAGGAAACAAATTA : GGGAGGAGGTAGATGGTGATGATTATGGAAGTGTAACCACAGCTGTAAACGTAGGTCCTAACATTAAAGCTACTGCAGTCTCACAGATGGAGGCAGCAATTGATGCATTATCACGAGAATTGACCAAGCTGCGAACTGGAAGAGCATCGGCTG : GAATGCTTGATCATATCATCGTTGATTCAGGAGGTGTTAAGACACCTCTTTGCAGGATGGCTGTCATTTCAGTGCTAGACCCAAAAACCTTGTCAGTGAATCCTTATGATCCAGAT : TCCCTCAAAGAGTTGGAGAAAGCCATTATTTCATCTCCATTGGGGTTAAATCCTCAATCCGACAACCAGAGATTAATTGTACCAATACCTCC : GTTGACTAAGGAGCATGTGCAG : GCTGTGTGCAAAGTGGTTGCGAAATCATCTGAAGACGTTAAGCAAAGTATAAGACGAGCACGCCAGAAG : GCTTTGGACACGATAAAGAAATCTGTGCCCAAGAAGAAAGACAAAGACAAGTCAGCTTCAGCTTTCTCAGAAGACGATGCAAAAAGACTGGAGAAGGAA : ATTGATGACTTGACAAAAAAGTTTATTAAGTCAGCAGAAGATATGTGCAAGTCAAAGGACAGAGAAATAACTAGCAGTTGAAGAAACTAGTTTTAGTTTCATCGGAGGCTCACGCAAAGGTTCAATTTTTTGGCTGAAGCTATAGAGGGAATTATTTACTCTCCAGAATTCTTGTACTCGAAGTCGGAAAAAGATAACAAGACATGTTACAACTTACAAGTGATCATGCTAATACTTGAAAAGAAAGATATTGTATTTCATATAACCTATGCTGTTGGTTTTTAGCTTTTCATGTTCAGGATCATATATCATTTCATTTTGTGACAAGGGCTGAGATCATGTAACTTTTTTTTATATATAAATCAAACAACTATTTGTTCTCT</gDNA_template>
            <first_frame> W  R  S  Q  L  D  E  H  *  Q  L  T  A  T  S  M  V  H  Y  G  L  P  I  S  L  Q  I  V  *  *  A  P  L  *  V  Q  F  A  M  K  L  F  P  V  R  W  S  R  P  P  I  F  C  L  K  V  G  G  V  L  L  K  E  G  N  K  L  :  G  R  R  *  M  V  M  I  M  E  V  *  P  Q  L  *  T  *  V  L  T  L  K  L  L  Q  S  H  R  W  R  Q  Q  L  M  H  Y  H  E  N  *  P  S  C  E  L  E  E  H  R  L  :  E  C  L  I  I  S  S  L  I  Q  E  V  L  R  H  L  F  A  G  W  L  S  F  Q  C  *  T  Q  K  P  C  Q  *  I  L  M  I  Q  I :   P  S  K  S  W  R  K  P  L  F  H  L  H  W  G  *  I  L  N  P  T  T  R  D  *  L  Y  Q  Y  L   : R  *  L  R  S  M  C  R :   L  C  A  K  W  L  R  N  H  L  K  T  L  S  K  V  *  D  E  H  A  R  R :   L  W  T  R  *  R  N  L  C  P  R  R  K  T  K  T  S  Q  L  Q  L  S  Q  K  T  M  Q  K  D  W  R  R  K :   L  M  T  *  Q  K  S  L  L  S  Q  Q  K  I  C  A  S  Q  R  T  E  K  *  L  A  V  E  E  T  S  F  S  F  I  G  G  S  R  K  G  S  I  F  W  L  K  L  *  R  E  L  F  T  L  Q  N  S  C  T  R  S  R  K  K  I  T  R  H  V  T  T  Y  K  *  S  C  *  Y  L  K  R  K  I  L  Y  F  I  *  P  M  L  L  V  F  S  F  S  C  S  G  S  Y  I  I  S  F  C  D  K  G  *  D  H  V  T  F  F  Y  I  *  I  K  Q  L  F  V  L  </first_frame>
            <second_frame>  G  D  L  N  S  T  S  I  S  S  L  P  Q  H  L  W  C  I  T  G  Y  Q  F  H  C  K  S  F  D  R  L  H  F  E  S  N  S  L  *  N  C  S  L  F  A  G  A  D  H  Q  F  S  A  *  K  S  E  E  F  C  *  R  K  E  T  N  * :   G  G  G  R  W  *  *  L  W  K  C  N  H  S  C  K  R  R  S  *  H  *  S  Y  C  S  L  T  D  G  G  S  N  *  C  I  I  T  R  I  D  Q  A  A  N  W  K  S  I  G  W :   N  A  *  S  Y  H  R  *  F  R  R  C  *  D  T  S  L  Q  D  G  C  H  F  S  A  R  P  K  N  L  V  S  E  S  L  *  S  R   : F  P  Q  R  V  G  E  S  H  Y  F  I  S  I  G  V  K  S  S  I  R  Q  P  E  I  N  C  T  N  T  S  :  V  D  *  G  A  C  A   : G  C  V  Q  S  G  C  E  I  I  *  R  R  *  A  K  Y  K  T  S  T  P  E   : G  F  G  H  D  K  E  I  C  A  Q  E  E  R  Q  R  Q  V  S  F  S  F  L  R  R  R  C  K  K  T  G  E  G   : N  *  *  L  D  K  K  V  Y  *  V  S  R  R  Y  V  Q  V  K  G  Q  R  N  N  *  Q  L  K  K  L  V  L  V  S  S  E  A  H  A  K  V  Q  F  F  G  *  S  Y  R  G  N  Y  L  L  S  R  I  L  V  L  E  V  G  K  R  *  Q  D  M  L  Q  L  T  S  D  H  A  N  T  *  K  E  R  Y  C  I  S  Y  N  L  C  C  W  F  L  A  F  H  V  Q  D  H  I  S  F  H  F  V  T  R  A  E  I  M  *  L  F  F  I  Y  K  S  N  N  Y  L  F  S </second_frame>
            <third_frame>   A  I  S  T  R  R  A  L  A  A  Y  R  N  I  Y  G  A  L  R  A  T  N  F  T  A  N  R  L  I  G  S  T  L  S  P  I  R  Y  E  T  V  P  C  S  L  E  Q  T  T  N  F  L  L  E  S  R  R  S  F  A  K  G  R  K  Q  I   : R  E  E  V  D  G  D  D  Y  G  S  V  T  T  A  V  N  V  G  P  N  I  K  A  T  A  V  S  Q  M  E  A  A  I  D  A  L  S  R  E  L  T  K  L  R  T  G  R  A  S  A   : G  M  L  D  H  I  I  V  D  S  G  G  V  K  T  P  L  C  R  M  A  V  I  S  V  L  D  P  K  T  L  S  V  N  P  Y  D  P  D  :  S  L  K  E  L  E  K  A  I  I  S  S  P  L  G  L  N  P  Q  S  D  N  Q  R  L  I  V  P  I  P  P :   L  T  K  E  H  V  Q  :  A  V  C  K  V  V  A  K  S  S  E  D  V  K  Q  S  I  R  R  A  R  Q  K  :  A  L  D  T  I  K  K  S  V  P  K  K  K  D  K  D  K  S  A  S  A  F  S  E  D  D  A  K  R  L  E  K  E  :  I  D  D  L  T  K  K  F  I  K  S  A  E  D  M  C  K  S  K  D  R  E  I  T  S  S  *  R  N  *  F  *  F  H  R  R  L  T  Q  R  F  N  F  L  A  E  A  I  E  G  I  I  Y  S  P  E  F  L  Y  S  K  S  E  K  D  N  K  T  C  Y  N  L  Q  V  I  M  L  I  L  E  K  K  D  I  V  F  H  I  T  Y  A  V  G  F  *  L  F  M  F  R  I  I  Y  H  F  I  L  *  Q  G  L  R  S  C  N  F  F  L  Y  I  N  Q  T  T  I  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113717" stop="113915"/>
                    <exon start="115069" stop="115221"/>
                    <exon start="115307" stop="115422"/>
                    <exon start="115605" stop="115696"/>
                    <exon start="116097" stop="116118"/>
                    <exon start="116187" stop="116255"/>
                    <exon start="117818" stop="117916"/>
                    <exon start="118028" stop="118108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISTRRALAAYRNIYGALRATNFTANRLIGSTLSPIRYETVPCSLEQTTNFLLESRRSFAKGRKQIREEVDGDDYGSVTTAVNVGPNIKATAVSQMEAAIDALSRELTKLRTGRASAGMLDHIIVDSGGVKTPLCRMAVISVLDPKTLSVNPYDPDSLKELEKAIISSPLGLNPQSDNQRLIVPIPPLTKEHVQAVCKVVAKSSEDVKQSIRRARQKALDTIKKSVPKKKDKDKSASAFSEDDAKRLEKEIDDLTKKFIKSAEDMCKSKDREITSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116926" e_stop="117578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="116926" e_stop="117578" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116926" stop="117445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116927" stop="117578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATCAAAATGAAGCTGGAGGTATGTTGGACTTGGTTGTTGCTGGGTAACAAAGACCTGACTTTCTGTTTCAGGTATGTTAATGTGATTTGGGTGCGGAGAGCTTGAAAAGTAAATGGCTACTAACTGTAGTGCTTTAGAGGGGTTATTTTTTGTAGTCCTGTAGTTGAATTCTGGTAGTTTCTGGTTGCAACAATGTCTAGGGAAAGGTGCTTTAGAGAATATTCTTGTAAAAAATAAGGTTTAGTGGCCAAACTACAGGAACAAAAGAGAAGGAATATTGGCATTGTGGGAGGTTTTAACATTCTAGTTCCTTTTTAGTTAGAGAAGTTAAGGAGGATAACAAAAATATTATAGAGAGAAAACGTGAGAAATTCCAACTTTGGAGATGCTAAATGAATTATCACTTAGTTCATTAACCTTCAACCTAGTTTGGCCACCAACAAGAGGTTACTGTAGTTTTCAGTATGCTGTCCTCTATTAACAAATTAATGGAGCTCTTCCAGTAGTTTCTTGTTTGGAATTGAGGGAAACATCTTTGTTCAAAAGTTGTGTGTGTTATGCTTATATGATGTCCACGATACTCTCCTCGCATGACTTGGACTGTACTGAAGATGTGGTGAATTACCTTTTTTGTCACCTATCATTTATGA</gDNA_template>
            <first_frame> N  I  K  M  K  L  E  V  C  W  T  W  L  L  L  G  N  K  D  L  T  F  C  F  R  Y  V  N  V  I  W  V  R  R  A  *  K  V  N  G  Y  *  L  *  C  F  R  G  V  I  F  C  S  P  V  V  E  F  W  *  F  L  V  A  T  M  S  R  E  R  C  F  R  E  Y  S  C  K  K  *  G  L  V  A  K  L  Q  E  Q  K  R  R  N  I  G  I  V  G  G  F  N  I  L  V  P  F  *  L  E  K  L  R  R  I  T  K  I  L  *  R  E  N  V  R  N  S  N  F  G  D  A  K  *  I  I  T  *  F  I  N  L  Q  P  S  L  A  T  N  K  R  L  L  *  F  S  V  C  C  P  L  L  T  N  *  W  S  S  S  S  S  F  L  F  G  I  E  G  N  I  F  V  Q  K  L  C  V  L  C  L  Y  D  V  H  D  T  L  L  A  *  L  G  L  Y  *  R  C  G  E  L  P  F  L  S  P  I  I  Y   </first_frame>
            <second_frame>  I  S  K  *  S  W  R  Y  V  G  L  G  C  C  W  V  T  K  T  *  L  S  V  S  G  M  L  M  *  F  G  C  G  E  L  E  K  *  M  A  T  N  C  S  A  L  E  G  L  F  F  V  V  L  *  L  N  S  G  S  F  W  L  Q  Q  C  L  G  K  G  A  L  E  N  I  L  V  K  N  K  V  *  W  P  N  Y  R  N  K  R  E  G  I  L  A  L  W  E  V  L  T  F  *  F  L  F  S  *  R  S  *  G  G  *  Q  K  Y  Y  R  E  K  T  *  E  I  P  T  L  E  M  L  N  E  L  S  L  S  S  L  T  F  N  L  V  W  P  P  T  R  G  Y  C  S  F  Q  Y  A  V  L  Y  *  Q  I  N  G  A  L  P  V  V  S  C  L  E  L  R  E  T  S  L  F  K  S  C  V  C  Y  A  Y  M  M  S  T  I  L  S  S  H  D  L  D  C  T  E  D  V  V  N  Y  L  F  C  H  L  S  F  M  </second_frame>
            <third_frame>   Y  Q  N  E  A  G  G  M  L  D  L  V  V  A  G  *  Q  R  P  D  F  L  F  Q  V  C  *  C  D  L  G  A  E  S  L  K  S  K  W  L  L  T  V  V  L  *  R  G  Y  F  L  *  S  C  S  *  I  L  V  V  S  G  C  N  N  V  *  G  K  V  L  *  R  I  F  L  *  K  I  R  F  S  G  Q  T  T  G  T  K  E  K  E  Y  W  H  C  G  R  F  *  H  S  S  S  F  L  V  R  E  V  K  E  D  N  K  N  I  I  E  R  K  R  E  K  F  Q  L  W  R  C  *  M  N  Y  H  L  V  H  *  P  S  T  *  F  G  H  Q  Q  E  V  T  V  V  F  S  M  L  S  S  I  N  K  L  M  E  L  F  Q  *  F  L  V  W  N  *  G  K  H  L  C  S  K  V  V  C  V  M  L  I  *  C  P  R  Y  S  P  R  M  T  W  T  V  L  K  M  W  *  I  T  F  F  V  T  Y  H  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0143O06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="118649" PGL_stop="119068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118649" e_stop="119068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="118649" e_stop="119068" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118649" stop="119068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATCAACTAGCTCTGATAATGCACAAACCACAACTTGCTTCAGTTTGGAGTACAAGGTTCAATCTTTTCGACATGAACATTGCCATCATAGTCAATTTTGTAGGAGGTGTCAAGGCCTTCCAAAATAAGGTGGTAAACAATATCATCAGAAAAATGAACTTCCTCTTGACTGTCGTCATCTTCAAGCGTTGCATTATTCATGCTGCTATTTTCAGTCTTATGAGGTCGAATCCTCTGAGATACTGATCGTATATCCCATGACAGCACTTGATGAATCAATTTTTGAAACTCAGTAGGAGATGTATAAAGTAATATCTCGGTTTTCTTCTTCTTTTGTAATTTTCTTGACCAACAATGGCTCAGAGAGGCAGAGAAGTCGTGAGAGAAGTTAACAGATGTTATAGCTAACATATTGTCC</gDNA_template>
            <first_frame> S  I  N  *  L  *  *  C  T  N  H  N  L  L  Q  F  G  V  Q  G  S  I  F  S  T  *  T  L  P  S  *  S  I  L  *  E  V  S  R  P  S  K  I  R  W  *  T  I  S  S  E  K  *  T  S  S  *  L  S  S  S  S  S  V  A  L  F  M  L  L  F  S  V  L  *  G  R  I  L  *  D  T  D  R  I  S  H  D  S  T  *  *  I  N  F  *  N  S  V  G  D  V  *  S  N  I  S  V  F  F  F  F  C  N  F  L  D  Q  Q  W  L  R  E  A  E  K  S  *  E  K  L  T  D  V  I  A  N  I  L  S </first_frame>
            <second_frame>  Q  S  T  S  S  D  N  A  Q  T  T  T  C  F  S  L  E  Y  K  V  Q  S  F  R  H  E  H  C  H  H  S  Q  F  C  R  R  C  Q  G  L  P  K  *  G  G  K  Q  Y  H  Q  K  N  E  L  P  L  D  C  R  H  L  Q  A  L  H  Y  S  C  C  Y  F  Q  S  Y  E  V  E  S  S  E  I  L  I  V  Y  P  M  T  A  L  D  E  S  I  F  E  T  Q  *  E  M  Y  K  V  I  S  R  F  S  S  S  F  V  I  F  L  T  N  N  G  S  E  R  Q  R  S  R  E  R  S  *  Q  M  L  *  L  T  Y  C   </second_frame>
            <third_frame>   N  Q  L  A  L  I  M  H  K  P  Q  L  A  S  V  W  S  T  R  F  N  L  F  D  M  N  I  A  I  I  V  N  F  V  G  G  V  K  A  F  Q  N  K  V  V  N  N  I  I  R  K  M  N  F  L  L  T  V  V  I  F  K  R  C  I  I  H  A  A  I  F  S  L  M  R  S  N  P  L  R  Y  *  S  Y  I  P  *  Q  H  L  M  N  Q  F  L  K  L  S  R  R  C  I  K  *  Y  L  G  F  L  L  L  L  *  F  S  *  P  T  M  A  Q  R  G  R  E  V  V  R  E  V  N  R  C  Y  S  *  H  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118651" stop="118896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQLALIMHKPQLASVWSTRFNLFDMNIAIIVNFVGGVKAFQNKVVNNIIRKMNFLLTVVIFKRCIIHAAIFSLMRSNPLRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="127012" PGL_stop="121173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127012" e_stop="126304"/>
            <exon e_start="125436" e_stop="125256"/>
            <exon e_start="125148" e_stop="125096"/>
            <exon e_start="124643" e_stop="124542"/>
            <exon e_start="124471" e_stop="124363"/>
            <exon e_start="124248" e_stop="124170"/>
            <exon e_start="123975" e_stop="123810"/>
            <exon e_start="122440" e_stop="122305"/>
            <exon e_start="122211" e_stop="122042"/>
            <exon e_start="121859" e_stop="121637"/>
            <exon e_start="121528" e_stop="121173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.958"/>
          <exon-intron don_prob="0.745" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.785" e_score="1.000"/>
          <exon-intron don_prob="0.461" acc_prob="0.685" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.646" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.454" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.310" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="127012" e_stop="126304" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126303" i_stop="125437" i_length="867"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125436" e_stop="125256" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.745" acc_prob="0.988">
            <gDNA_intron_boundary i_start="125255" i_stop="125149" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125148" e_stop="125096" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.785">
            <gDNA_intron_boundary i_start="125095" i_stop="124644" i_length="452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124643" e_stop="124542" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.461" acc_prob="0.685">
            <gDNA_intron_boundary i_start="124541" i_stop="124472" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124471" e_stop="124363" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124362" i_stop="124249" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124248" e_stop="124170" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.801">
            <gDNA_intron_boundary i_start="124169" i_stop="123976" i_length="194"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123975" e_stop="123810" e_length="166"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.646">
            <gDNA_intron_boundary i_start="123809" i_stop="122441" i_length="1369"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="122440" e_stop="122305" e_length="136"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.454">
            <gDNA_intron_boundary i_start="122304" i_stop="122212" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="122211" e_stop="122042" e_length="170"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.977">
            <gDNA_intron_boundary i_start="122041" i_stop="121860" i_length="182"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="121859" e_stop="121637" e_length="223"/>
          </exon>
          <intron i_serial="10" don_prob="0.310" acc_prob="0.988">
            <gDNA_intron_boundary i_start="121636" i_stop="121529" i_length="108"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="121528" e_stop="121173" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127012" stop="126304"/>
              <exon start="125436" stop="125393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126956" stop="126339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126956" stop="126424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126883" stop="126456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126692" stop="126304"/>
              <exon start="125436" stop="125403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126669" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126581" stop="126304"/>
              <exon start="125436" stop="125279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126517" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126486" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126425" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126424" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126367" stop="126304"/>
              <exon start="125436" stop="125256"/>
              <exon start="125148" stop="125135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125144" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125130" stop="125096"/>
              <exon start="124643" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122042"/>
              <exon start="121859" stop="121740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124568" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124568" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124567" stop="124542"/>
              <exon start="124471" stop="124363"/>
              <exon start="124248" stop="124170"/>
              <exon start="123975" stop="123834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124225" stop="124170"/>
              <exon start="123975" stop="123810"/>
              <exon start="122440" stop="122305"/>
              <exon start="122211" stop="122047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122387" stop="122305"/>
              <exon start="122211" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122317" stop="122305"/>
              <exon start="122211" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428156" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122194" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122181" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122181" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122181" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122181" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122180" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122101" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122055" stop="122042"/>
              <exon start="121859" stop="121637"/>
              <exon start="121528" stop="121173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121810" stop="121637"/>
              <exon start="121528" stop="121183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418111" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121810" stop="121637"/>
              <exon start="121528" stop="121194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425221" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATATCCATCATTCATTTTCATGTGCACTTCTTCTCTTCAATCCCCAAATAAACATATTGTGTTATTCATTCATCTTTTCTTATTGAAATCTTTATTATTATTACCTTAGCTTTCTAGGGTTTAGAGAAAAGGGGAGAAAGAAACTTAAAGCTCTCACCTTTATACATATTTATAAAAATATATACATAATGGTGTCTCTCCTTTTCTAATTTTAGTTTTAGTTTTTTTTTTTTTTGCATGTATAAGGAATCATTTGCTTTTGGGTGTCTTTGACATATGGAATTGCTTTATCAGAACAAAGAAAAAGAAAGAAAGAGAGAATATATAAAGAGGATATGAGCTGATGTTTAATGGGTTCTTTATGTTACTGCTGTTGTTCAATGGTGTTGCTTTCACTCCTTTCATAGTTTGTTGTGAAAAAAATCCAATCTTTTTGAAGATATAGGAAGAATATAAGTGTATTGATTGAAAGGGGTTTGTGGGGGTGCTGAAAGATTAGGTTTTTTTCTTGTTTGAGGGTGAAATGTTGGCATTGGTAGGGGGAGAAGGTGATATGGAGCAAGAATTTGATGCAAAGCTAAAGATTCAGAACAATTCAGCTAATACTCAGAGATCTAAGAGCTTTGCATTTAGGGCACCACAAGAGAATTTTACAATTCAAGATTTTGAATTGGGGAAGATCTATGGAGTTGGTTCTTATTCCAAG : GTTGTCAGAGCGAAAAAGAAAGATACTGCGAATGTTTATGCCTTGAAGATCATGGACAAGAAGTTCATCACTAAGGAAAATAAGACTGCTTATGTGAAACTAGAGCGTATTGTACTTGATCAGTTAGATCATCCCGGTGTTGTCCGACTATTTTTCACCTTTCAAGACACTTTTTCACTGT : ACATGGCACTTGAGTCTTGTGAAGGTGGAGAGCTTTTTGATCAAATAACAAGG : AAAGGCCGTTTGTCTGAAGATGAGGCACGCTTTTATGCAGCTGAAGTTGTAGACGCTCTTGAATATATACATAGTATGGGATTGATTCATCGAGACATTAAG : CCAGAGAACCTGCTTCTTACTTCAGATGGACATATTAAAATTGCAGACTTTGGCAGTGTAAAGCCAATGCAGGATAGCAGAATAACAGTCCTTCCAAATGCTGCATCAG : ATGACAAAGCCTGTACTTTTGTGGGAACAGCCGCTTATGTACCTCCTGAAGTTTTAAATTCTTCTCCTGCGACTTTTGG : AAATGATCTTTGGGCACTTGGCTGCACATTGTATCAAATGCTTTCAGGAACTTCTCCGTTTAAAGATGCCAGTGAATGGCTCATCTTCCAGAGAATCATTGCCAGAGATATTAGATTCCCAAATTATTTTTCAAATGAAGCCAGAGATATTATTGATCAGCTGCTG : GATGTTGATCCTAGCAGAAGACCTGGTGCTGGACCTGATGGTTATGCTTTCCTTGAAAAATCATCCTTTCTTTAGTGGGATCGATTGGGAGAATTTGAGGTTGCAGACCCCTCCAAGGCTTGCCATGGAGCCAAAA : GCCCCGTCAACTCATAGCAGTGGTGATGAGCAAGATCCTTCATGGAATCCATCACACATTGGAGATGGTTCAGTTAGACCTAACGATGGAAACGGTGCTGCTGCATCAGTTTCTGAAGCTGGTAACAGTATCACCAGGCTCGCATCTATCGACTCCTTTGACTCAAAATG : GAAGCAATTTTTAGATCCTGGTGAATCCGTGCTCATGATCTCGATGGTGAAAAAGTTGCAGAAACTCACAAGCAAGAAAGTTCAGCTAATCCTAACAAATAAACCAAAGTTGATTTACGTAGATCCCTCAAAGTTGGTGATCAAAGGGAACATTATATGGTCCGACAATCCTAACGATCTTAGCATTCAAGTCACAAGCCCTTCACAGTTCAAGATTTGTACA : CCAAAGAAAGTTATGTCATTCGAGGATGCCAAAAACCGAGCACAACAGTGGAAAAAGGCGATTGAAGCTCTCCAGAACCGGTGATTCTGGTCTTTTTGTTGTTTTGACTACACATTCTTTGCAGATCGAACGGGGTTCCAGAAACAGTTGGATGCTCCTAAAAAGAACTTCTTATCAAACACCACTCAATTTTACAGCTTTACTCTCTCTAGTAGAAATTTTCACTTATCCTTGGATGAAGCTCACTCCTGTTTACACAAATCACATTTGTATGTTTACAGACTTGTAAAGACACAAAAGTTTTATTGAAAGAACTTGATGAGCTGATTTTATCAGCTATTTTGCTATCTATTATT</gDNA_template>
            <first_frame> M  I  S  I  I  H  F  H  V  H  F  F  S  S  I  P  K  *  T  Y  C  V  I  H  S  S  F  L  I  E  I  F  I  I  I  T  L  A  F  *  G  L  E  K  R  G  E  R  N  L  K  L  S  P  L  Y  I  F  I  K  I  Y  T  *  W  C  L  S  F  S  N  F  S  F  S  F  F  F  F  C  M  Y  K  E  S  F  A  F  G  C  L  *  H  M  E  L  L  Y  Q  N  K  E  K  E  R  K  R  E  Y  I  K  R  I  *  A  D  V  *  W  V  L  Y  V  T  A  V  V  Q  W  C  C  F  H  S  F  H  S  L  L  *  K  K  S  N  L  F  E  D  I  G  R  I  *  V  Y  *  L  K  G  V  C  G  G  A  E  R  L  G  F  F  L  V  *  G  *  N  V  G  I  G  R  G  R  R  *  Y  G  A  R  I  *  C  K  A  K  D  S  E  Q  F  S  *  Y  S  E  I  *  E  L  C  I  *  G  T  T  R  E  F  Y  N  S  R  F  *  I  G  E  D  L  W  S  W  F  L  F  Q   : G  C  Q  S  E  K  E  R  Y  C  E  C  L  C  L  E  D  H  G  Q  E  V  H  H  *  G  K  *  D  C  L  C  E  T  R  A  Y  C  T  *  S  V  R  S  S  R  C  C  P  T  I  F  H  L  S  R  H  F  F  T  V :   H  G  T  *  V  L  *  R  W  R  A  F  *  S  N  N  K   : E  R  P  F  V  *  R  *  G  T  L  L  C  S  *  S  C  R  R  S  *  I  Y  T  *  Y  G  I  D  S  S  R  H  *   : A  R  E  P  A  S  Y  F  R  W  T  Y  *  N  C  R  L  W  Q  C  K  A  N  A  G  *  Q  N  N  S  P  S  K  C  C  I  R :   *  Q  S  L  Y  F  C  G  N  S  R  L  C  T  S  *  S  F  K  F  F  S  C  D  F  W  :  K  *  S  L  G  T  W  L  H  I  V  S  N  A  F  R  N  F  S  V  *  R  C  Q  *  M  A  H  L  P  E  N  H  C  Q  R  Y  *  I  P  K  L  F  F  K  *  S  Q  R  Y  Y  *  S  A  A   : G  C  *  S  *  Q  K  T  W  C  W  T  *  W  L  C  F  P  *  K  I  I  L  S  L  V  G  S  I  G  R  I  *  G  C  R  P  L  Q  G  L  P  W  S  Q  K :   P  R  Q  L  I  A  V  V  M  S  K  I  L  H  G  I  H  H  T  L  E  M  V  Q  L  D  L  T  M  E  T  V  L  L  H  Q  F  L  K  L  V  T  V  S  P  G  S  H  L  S  T  P  L  T  Q  N   : G  S  N  F  *  I  L  V  N  P  C  S  *  S  R  W  *  K  S  C  R  N  S  Q  A  R  K  F  S  *  S  *  Q  I  N  Q  S  *  F  T  *  I  P  Q  S  W  *  S  K  G  T  L  Y  G  P  T  I  L  T  I  L  A  F  K  S  Q  A  L  H  S  S  R  F  V  H :   Q  R  K  L  C  H  S  R  M  P  K  T  E  H  N  S  G  K  R  R  L  K  L  S  R  T  G  D  S  G  L  F  V  V  L  T  T  H  S  L  Q  I  E  R  G  S  R  N  S  W  M  L  L  K  R  T  S  Y  Q  T  P  L  N  F  T  A  L  L  S  L  V  E  I  F  T  Y  P  W  M  K  L  T  P  V  Y  T  N  H  I  C  M  F  T  D  L  *  R  H  K  S  F  I  E  R  T  *  *  A  D  F  I  S  Y  F  A  I  Y  Y  </first_frame>
            <second_frame>  *  Y  P  S  F  I  F  M  C  T  S  S  L  Q  S  P  N  K  H  I  V  L  F  I  H  L  F  L  L  K  S  L  L  L  L  P  *  L  S  R  V  *  R  K  G  E  K  E  T  *  S  S  H  L  Y  T  Y  L  *  K  Y  I  H  N  G  V  S  P  F  L  I  L  V  L  V  F  F  F  F  A  C  I  R  N  H  L  L  L  G  V  F  D  I  W  N  C  F  I  R  T  K  K  K  K  E  R  E  N  I  *  R  G  Y  E  L  M  F  N  G  F  F  M  L  L  L  L  F  N  G  V  A  F  T  P  F  I  V  C  C  E  K  N  P  I  F  L  K  I  *  E  E  Y  K  C  I  D  *  K  G  F  V  G  V  L  K  D  *  V  F  F  L  F  E  G  E  M  L  A  L  V  G  G  E  G  D  M  E  Q  E  F  D  A  K  L  K  I  Q  N  N  S  A  N  T  Q  R  S  K  S  F  A  F  R  A  P  Q  E  N  F  T  I  Q  D  F  E  L  G  K  I  Y  G  V  G  S  Y  S  K  :  V  V  R  A  K  K  K  D  T  A  N  V  Y  A  L  K  I  M  D  K  K  F  I  T  K  E  N  K  T  A  Y  V  K  L  E  R  I  V  L  D  Q  L  D  H  P  G  V  V  R  L  F  F  T  F  Q  D  T  F  S  L   : Y  M  A  L  E  S  C  E  G  G  E  L  F  D  Q  I  T  R  :  K  G  R  L  S  E  D  E  A  R  F  Y  A  A  E  V  V  D  A  L  E  Y  I  H  S  M  G  L  I  H  R  D  I  K  :  P  E  N  L  L  L  T  S  D  G  H  I  K  I  A  D  F  G  S  V  K  P  M  Q  D  S  R  I  T  V  L  P  N  A  A  S   : D  D  K  A  C  T  F  V  G  T  A  A  Y  V  P  P  E  V  L  N  S  S  P  A  T  F  G :   N  D  L  W  A  L  G  C  T  L  Y  Q  M  L  S  G  T  S  P  F  K  D  A  S  E  W  L  I  F  Q  R  I  I  A  R  D  I  R  F  P  N  Y  F  S  N  E  A  R  D  I  I  D  Q  L  L  :  D  V  D  P  S  R  R  P  G  A  G  P  D  G  Y  A  F  L  E  K  S  S  F  L  *  W  D  R  L  G  E  F  E  V  A  D  P  S  K  A  C  H  G  A  K   : S  P  V  N  S  *  Q  W  *  *  A  R  S  F  M  E  S  I  T  H  W  R  W  F  S  *  T  *  R  W  K  R  C  C  C  I  S  F  *  S  W  *  Q  Y  H  Q  A  R  I  Y  R  L  L  *  L  K  M  :  E  A  I  F  R  S  W  *  I  R  A  H  D  L  D  G  E  K  V  A  E  T  H  K  Q  E  S  S  A  N  P  N  K  *  T  K  V  D  L  R  R  S  L  K  V  G  D  Q  R  E  H  Y  M  V  R  Q  S  *  R  S  *  H  S  S  H  K  P  F  T  V  Q  D  L  Y   : T  K  E  S  Y  V  I  R  G  C  Q  K  P  S  T  T  V  E  K  G  D  *  S  S  P  E  P  V  I  L  V  F  L  L  F  *  L  H  I  L  C  R  S  N  G  V  P  E  T  V  G  C  S  *  K  E  L  L  I  K  H  H  S  I  L  Q  L  Y  S  L  *  *  K  F  S  L  I  L  G  *  S  S  L  L  F  T  Q  I  T  F  V  C  L  Q  T  C  K  D  T  K  V  L  L  K  E  L  D  E  L  I  L  S  A  I  L  L  S  I  I </second_frame>
            <third_frame>   D  I  H  H  S  F  S  C  A  L  L  L  F  N  P  Q  I  N  I  L  C  Y  S  F  I  F  S  Y  *  N  L  Y  Y  Y  Y  L  S  F  L  G  F  R  E  K  G  R  K  K  L  K  A  L  T  F  I  H  I  Y  K  N  I  Y  I  M  V  S  L  L  F  *  F  *  F  *  F  F  F  F  L  H  V  *  G  I  I  C  F  W  V  S  L  T  Y  G  I  A  L  S  E  Q  R  K  R  K  K  E  R  I  Y  K  E  D  M  S  *  C  L  M  G  S  L  C  Y  C  C  C  S  M  V  L  L  S  L  L  S  *  F  V  V  K  K  I  Q  S  F  *  R  Y  R  K  N  I  S  V  L  I  E  R  G  L  W  G  C  *  K  I  R  F  F  S  C  L  R  V  K  C  W  H  W  *  G  E  K  V  I  W  S  K  N  L  M  Q  S  *  R  F  R  T  I  Q  L  I  L  R  D  L  R  A  L  H  L  G  H  H  K  R  I  L  Q  F  K  I  L  N  W  G  R  S  M  E  L  V  L  I  P  R :   L  S  E  R  K  R  K  I  L  R  M  F  M  P  *  R  S  W  T  R  S  S  S  L  R  K  I  R  L  L  M  *  N  *  S  V  L  Y  L  I  S  *  I  I  P  V  L  S  D  Y  F  S  P  F  K  T  L  F  H  C  :  T  W  H  L  S  L  V  K  V  E  S  F  L  I  K  *  Q  G :   K  A  V  C  L  K  M  R  H  A  F  M  Q  L  K  L  *  T  L  L  N  I  Y  I  V  W  D  *  F  I  E  T  L  S :   Q  R  T  C  F  L  L  Q  M  D  I  L  K  L  Q  T  L  A  V  *  S  Q  C  R  I  A  E  *  Q  S  F  Q  M  L  H  Q  :  M  T  K  P  V  L  L  W  E  Q  P  L  M  Y  L  L  K  F  *  I  L  L  L  R  L  L   : E  M  I  F  G  H  L  A  A  H  C  I  K  C  F  Q  E  L  L  R  L  K  M  P  V  N  G  S  S  S  R  E  S  L  P  E  I  L  D  S  Q  I  I  F  Q  M  K  P  E  I  L  L  I  S  C  W :   M  L  I  L  A  E  D  L  V  L  D  L  M  V  M  L  S  L  K  N  H  P  F  F  S  G  I  D  W  E  N  L  R  L  Q  T  P  P  R  L  A  M  E  P  K  :  A  P  S  T  H  S  S  G  D  E  Q  D  P  S  W  N  P  S  H  I  G  D  G  S  V  R  P  N  D  G  N  G  A  A  A  S  V  S  E  A  G  N  S  I  T  R  L  A  S  I  D  S  F  D  S  K  W :   K  Q  F  L  D  P  G  E  S  V  L  M  I  S  M  V  K  K  L  Q  K  L  T  S  K  K  V  Q  L  I  L  T  N  K  P  K  L  I  Y  V  D  P  S  K  L  V  I  K  G  N  I  I  W  S  D  N  P  N  D  L  S  I  Q  V  T  S  P  S  Q  F  K  I  C  T  :  P  K  K  V  M  S  F  E  D  A  K  N  R  A  Q  Q  W  K  K  A  I  E  A  L  Q  N  R  *  F  W  S  F  C  C  F  D  Y  T  F  F  A  D  R  T  G  F  Q  K  Q  L  D  A  P  K  K  N  F  L  S  N  T  T  Q  F  Y  S  F  T  L  S  S  R  N  F  H  L  S  L  D  E  A  H  S  C  L  H  K  S  H  L  Y  V  Y  R  L  V  K  T  Q  K  F  Y  *  K  N  L  M  S  *  F  Y  Q  L  F  C  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126510" stop="126304"/>
                    <exon start="125436" stop="125256"/>
                    <exon start="125148" stop="125096"/>
                    <exon start="124643" stop="124542"/>
                    <exon start="124471" stop="124363"/>
                    <exon start="124248" stop="124170"/>
                    <exon start="123975" stop="123810"/>
                    <exon start="122440" stop="122366"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFLFEGEMLALVGGEGDMEQEFDAKLKIQNNSANTQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTANVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIRFPNYFSNEARDIIDQLLDVDPSRRPGAGPDGYAFLEKSSFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121719" stop="121637"/>
                    <exon start="121528" stop="121240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKGTLYGPTILTILAFKSQALHSSRFVHQRKLCHSRMPKTEHNSGKRRLKLSRTGDSGLFVVLTTHSLQIERGSRNSWMLLKRTSYQTPLNFTALLSLVEIFTYPWMKLTPVYTNHICMFTDL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122342" stop="122305"/>
                    <exon start="122211" stop="122042"/>
                    <exon start="121859" stop="121846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCRPLQGLPWSQKPRQLIAVVMSKILHGIHHTLEMVQLDLTMETVLLHQFLKLVTVSPGSHLSTPLTQNGSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="132613" PGL_stop="131703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132613" e_stop="131703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="132613" e_stop="131703" e_length="911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132613" stop="132019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132200" stop="131740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132119" stop="131703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGAACTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</gDNA_template>
            <first_frame> Q  A  C  Y  L  I  E  *  G  Y  F  V  V  G  *  T  E  Q  A  R  L  S  V  P  E  *  S  L  K  H  A  V  E  D  W  F  L  L  *  S  L  *  S  L  W  C  *  C  A  L  E  L  N  T  S  M  E  A  A  V  Q  R  K  L  T  R  *  M  V  S  T  L  S  S  L  Y  *  Q  *  P  T  M  L  G  S  G  T  *  K  C  M  S  S  I  T  Q  G  V  L  Q  Y  V  R  S  L  *  C  G  I  K  A  N  L  Q  N  *  V  S  S  I  Q  Q  C  Q  *  G  *  E  *  R  N  R  T  H  *  T  I  D  S  K  *  I  L  *  *  R  H  E  Q  F  L  N  L  M  M  T  L  *  C  L  V  M  M  L  K  G  D  L  R  Y  G  V  S  T  L  N  A  S  L  G  F  T  P  G  L  Q  M  E  T  H  *  N  I  E  L  R  I  M  L  A  S  T  M  D  T  T  *  F  L  Q  E  L  P  S  W  T  A  K  W  L  S  K  S  T  G  A  M  K  L  Q  Q  E  G  P  W  W  T  S  F  S  T  V  K  M  C  C  *  T  T  C  M  Q  T  R  A  P  P  V  Q  L  N  T  *  N  Q  H  G  Q  S  I  L  Q  S  F  L  A  L  Q  L  A  G  I  H  R  L  T  M  D  S  E  A  V  A  S  K  S  S  Q  K  C  M  E  V   </first_frame>
            <second_frame>  K  L  V  I  *  *  N  E  A  I  L  *  S  V  E  Q  S  K  L  V  S  P  C  Q  N  K  A  *  N  M  Q  W  R  I  G  S  C  C  N  L  Y  S  H  C  G  V  N  V  H  W  S  *  I  H  L  W  R  Q  R  C  R  G  S  L  P  V  K  W  S  V  L  S  V  H  F  I  N  N  D  L  R  C  S  A  L  E  L  E  N  V  C  Q  A  L  L  K  V  F  F  S  T  *  D  R  C  S  V  E  *  R  P  T  S  R  T  E  *  A  R  F  S  S  A  S  E  D  K  S  R  E  T  E  L  T  K  Q  S  I  Q  S  R  S  F  D  K  D  T  S  S  S  *  T  *  *  *  H  Y  D  A  L  *  *  C  *  K  G  I  *  G  M  A  *  V  P  *  T  H  R  W  V  L  P  P  A  C  R  W  K  P  I  E  I  *  S  *  E  S  C  S  R  A  Q  W  I  Q  H  D  S  Y  R  S  C  L  H  G  Q  Q  N  G  F  R  K  V  L  E  Q  *  S  C  S  R  K  G  R  G  G  Q  A  F  Q  L  *  R  C  V  A  K  L  L  V  C  K  R  E  L  L  Q  Y  S  *  I  R  K  T  S  M  G  N  R  Y  F  K  V  F  W  R  C  N  *  P  E  Y  T  D  S  L  W  T  Q  K  Q  L  P  P  K  V  L  R  N  V  W  K  Y  </second_frame>
            <third_frame>   S  L  L  S  N  R  M  R  L  F  C  S  R  L  N  R  A  S  S  S  L  R  A  R  I  K  P  K  T  C  S  G  G  L  V  L  A  V  I  F  I  V  T  V  V  L  M  C  T  G  V  K  Y  I  Y  G  G  S  G  A  E  E  A  Y  P  L  N  G  Q  Y  S  Q  F  T  L  L  T  M  T  Y  D  A  R  L  W  N  L  K  M  Y  V  K  H  Y  S  R  C  S  S  V  R  E  I  V  V  V  W  N  K  G  Q  P  P  E  L  S  E  L  D  S  A  V  P  V  R  I  R  V  E  K  Q  N  S  L  N  N  R  F  K  V  D  P  L  I  K  T  R  A  V  L  E  L  D  D  D  I  M  M  P  C  D  D  V  E  R  G  F  K  V  W  R  E  Y  P  E  R  I  V  G  F  Y  P  R  L  A  D  G  N  P  L  K  Y  R  A  E  N  H  A  R  E  H  N  G  Y  N  M  I  L  T  G  A  A  F  M  D  S  K  M  A  F  E  K  Y  W  S  N  E  A  A  A  G  R  A  V  V  D  K  L  F  N  C  E  D  V  L  L  N  Y  L  Y  A  N  A  S  S  S  S  T  V  E  Y  V  K  P  A  W  A  I  D  T  S  K  F  S  G  V  A  I  S  R  N  T  Q  T  H  Y  G  L  R  S  S  C  L  Q  K  F  S  E  M  Y  G  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132611" stop="131703"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSNRMRLFCSRLNRASSSLRARIKPKTCSGGLVLAVIFIVTVVLMCTGVKYIYGGSGAEEAYPLNGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVREIVVVWNKGQPPELSELDSAVPVRIRVEKQNSLNNRFKVDPLIKTRAVLELDDDIMMPCDDVERGFKVWREYPERIVGFYPRLADGNPLKYRAENHAREHNGYNMILTGAAFMDSKMAFEKYWSNEAAAGRAVVDKLFNCEDVLLNYLYANASSSSTVEYVKPAWAIDTSKFSGVAISRNTQTHYGLRSSCLQKFSEMYGSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 241 chains have been computed
$ 
$ memory statistics:
$ 762664 bytes spliced alignments in total
$ 195 spliced alignments have been stored
$ 3911 bytes was the average size of a spliced alignment
$ 35224 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1956 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 267 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:47:22
-->
