<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:55:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="6624" stop="7622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6923" g_stop="7324" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6923" e_stop="7324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAGTATTGTAAAACCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTGATTATATAATTGAGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAAACCTAATCTCTTGTTAATGATGATGCCTTGGTAAGGGAGAA-GCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTATAAGAGAAGGCTTGATGACTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTTTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-T-AAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="-" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="8006" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7706" g_stop="7370" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7706" e_stop="7370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="7080" stop="7917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7380" g_stop="7617" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7380" e_stop="7617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="7081" stop="8158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7381" g_stop="7858" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7381" e_stop="7858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-TTATTTGTGGAGTGCAGCAAATGTGCCGTCGTCTTCGATTCAACCGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGTTAACGTTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724574" ref_strand="+" ref_description="SGN-E724574 [FC24CB02]">
      <seq>gattggcggccaatcggccgaattcccatggggatccgacgatgcttcacctgctttgttttttccctgtgtgaaattgtaatccgcaattttctctttgattctcaaaattcatcaaatctttgagcttgaaatcacctcaggaacccaaaaaactcatgtcttttctcagtcaactcatcaaccaactgccaacccagcaaggatttgtataatcattgctgtttgtccacctgtgtgagattgtaatctggaataaagattccatttttccatctgggtgtctctcaatttgataaaaaaatccatttttccatctgggttttgctcaatttggttaaagaatcggtttttccagctgggttttgctcaatttggttaaagaatcgattttatccagatggggtttgctcaatttggttaaaaaatcgatttttgtgcatatgggtcatcagaaagaggaattaatcaacaagctgacggagttaatcgatggggtttctggtttaccggattgccggacagtgtctaaaaggatgtacagtaatttggggagaagagtgaagcttttgagtcctttatttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9354" stop="10555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9661" g_stop="10255" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="636" r_length="595" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E724574" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9661" e_stop="10255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTG-AATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATG</genome_strand>
        <mrna_strand>ATGCTTCACCTGCTTTGTTTTTTCCCTGTGTGAA-ATTGTAATCCGCAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAGGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCACCTGTGTGAGATTGTAATCTGGAATAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGATGGGGTTTGCTCAATTTGGTTAAAAAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACAAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGATTGCCGGACAGTGTCTAAAAGGATGTACAGTAATTTGGGGAGAAGAGTGAAGCTTTTGAGTCCTTTATTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312312" ref_strand="+" ref_description="SGN-E312312 [cTOA-5-C21]">
      <seq>tgctttgttttttccttgtgtgaacaaagagctttgaattttctctttgattctcaaaattcatcaaatctttgagcttgaaatcacctcaagaacccaaaaaactcatgtcttttctcagtcaactcatcaaccaactgccaacccagcaaggatttgtataatcattgctgtttgtccatctgtgtgtgtctctaaatttgattaaagattccatttttccatctgggtgtctctcaatttgataaaaaaatccatttttccatctgggttttgctcaatttggttaaagaatcggtttttccagctgggttttgctcaatttggttaaagaatcgattttatccagctggggtttgctcaatttggttaaagaatcgatttttgtgcatatgggtcatcagaaagaggaattaatcaacgagctgacggagttaatcgatggggtttctggtttaccggagtgccggtcagtgtctaagaggatgtacagtaatttggtgagaagagtgaagcttttgagtcctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatgggcttgagttgttgaaaattgctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9371" stop="10582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9671" g_stop="10282" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E312312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9671" e_stop="10282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTA</genome_strand>
        <mrna_strand>TGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706159" ref_strand="+" ref_description="SGN-E706159 [FA29AG02]">
      <seq>tgaacaaagagctttgaattttctctttgattctcaaaattcatcaaatctttgagcttgaaatcacctcaagaacccaaaaaactcatgtcttttctcagtcaactcatcaaccaactgccaacccagcaaggatttgtataatcattgctgtttgtccatctgtgtgtgtctctaaatttgattaaagattccatttttccatctgggtgtctctcaatttgataaaaaaatccatttttccatctgggttttgctcaatttggttaaagaatcggtttttccagctgggttttgctcaatttggttaaagaatcgattttatccagctggggtttgctcaatttggttaaagaatcgatttttgtgcatatgggtcatcagaaagaggaattaatcaacgagctgacggagttaatcgatggggtttctggtttaccggagtgccggtcagtgtctaagaggatgtacagtaatttggtgagaagagtgaagcttttgagtcctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatgggcttgagttgttgaaaattgctcttatttcaggtttggagcttctcaaatctgtaaatgaaggcagtaagattcttcaggctttacagatcgagaacatatcatcaaggtttctagatgtgacagagcaaattgaagatgcactaagccacattccttacaataagcttgatttatctgaggaagttcgagaacaaattgaacttgtgcatgctcaatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9391" stop="11469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9691" g_stop="10335" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10939" g_stop="11055" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="762" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11143" g_stop="11169" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="789" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E706159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9691" e_stop="10335"/>
          <exon e_start="10939" e_stop="11055"/>
          <exon e_start="11143" e_stop="11169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGTATTGACTTTTGATTTAATTTTTGTCACTGTTGAATGATTTATGATGACAATTGCTTAGGACTTATCAATCTTGGTTGTAGAAAATCAGTTCAGTATCTGTTAAGAGTGAGTTAAGAGTATCAGGTTGGTTTCGGAATGGACTCGTGGTTTGCTTATATGGACTTGGATAGTTCTCTCTTCTTGAGCTAGATTTTAGGGTTAAGTTAGGTTTAGGTGTCATATCGTTGCATGTTATTATAGCTAGGTCCAACCCTGTTTGGGTTCTCGATCCACGCTCCTGTTGGTCTTGGGCGTGAATGGGGTTGTTAGAGTGGGTTTGAGTCCTATATTGATTGTGGAATGGATTGGTGTTTTGTTTATTTGGAATTAAGACATTCCTTTCGTGTTGAGCTAGCTTTTGAGGTTGAGTTAGGCGCAACTTGATGGTTCAAATAAATCATAAGTAGTTGTTTTCTGCACTAGCTTTACACATTGCATGATGGATGCCGTTTGTATGGTATCATCAAGTTCGTTGCGTCTCTGTGCTGAAAATTATCATCATGAATGACATTGTCTCTTACTTCATCTTTCCTAAGGATCACTTGCGTTTTTCGTCTTGCAGGCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAAGTACGTCATCTAGCAATCCTTTTAATGGTTATACCTGATGTCCATTATCTTTTACTGAAAATCTTCACATTGTTTGGTTTTTTCTAGATTGAACTTGTGCATGCTCAATTTAAA</genome_strand>
        <mrna_strand>TGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAA.......................................................................................ATTGAACTTGTGCATGCTCAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478971" ref_strand="+" ref_description="SGN-E478971 [cSTD-7-P8]">
      <seq>cttagtttccttgtgtgaacatacaagagagctttgaattttctctcttttgattctcaaaattgatcaattctttgagcttgaaatcacctcaagaacccaaaaaactcatgttttttctcagtcaactcgtcaaccaactgccaacccagcaaggatttgcctaatcattgctgtttttccatctgggtctctccaaatttgattaaatattccatttttccatctgggtgtctctcaatttgatcaaaaattccattttcccaactgggttttgctcaatttggttaaagaatcaatttttccaactgggttttgctcaatttggttaaataatcgatttttgtgcatatgggtcatcagaaagaggacttaatcaatgagctgacggagttaatcgatggggtttctggtttgccggagtgccggtcggtgtctaagaggatgtacagtaatttggtgagaagggtgaagcttttgagccctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgntcatggacttgagttgttgagaattgctcttatttcaaggttggagcctctccaatctgttaatgaaggcagtaagattcttcaggctttacagatcgagaacatatcatcaaggttcctaaatgtgacagagcaaattgaagatgcactaagccacattccttacaataagcttgatttatctngaggaagtcgagaacaaattgaacttgtgcatgctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9381" stop="11464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9716" g_stop="9995" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="326" r_length="278" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9996" i_stop="10045" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10046" g_stop="10335" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="624" r_length="298" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10939" g_stop="11055" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="741" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11143" g_stop="11164" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="763" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E478971" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9716" e_stop="9995"/>
          <exon e_start="10046" e_stop="10335"/>
          <exon e_start="10939" e_stop="11055"/>
          <exon e_start="11143" e_stop="11164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAG--------AATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGTATTGACTTTTGATTTAATTTTTGTCACTGTTGAATGATTTATGATGACAATTGCTTAGGACTTATCAATCTTGGTTGTAGAAAATCAGTTCAGTATCTGTTAAGAGTGAGTTAAGAGTATCAGGTTGGTTTCGGAATGGACTCGTGGTTTGCTTATATGGACTTGGATAGTTCTCTCTTCTTGAGCTAGATTTTAGGGTTAAGTTAGGTTTAGGTGTCATATCGTTGCATGTTATTATAGCTAGGTCCAACCCTGTTTGGGTTCTCGATCCACGCTCCTGTTGGTCTTGGGCGTGAATGGGGTTGTTAGAGTGGGTTTGAGTCCTATATTGATTGTGGAATGGATTGGTGTTTTGTTTATTTGGAATTAAGACATTCCTTTCGTGTTGAGCTAGCTTTTGAGGTTGAGTTAGGCGCAACTTGATGGTTCAAATAAATCATAAGTAGTTGTTTTCTGCACTAGCTTTACACATTGCATGATGGATGCCGTTTGTATGGTATCATCAAGTTCGTTGCGTCTCTGTGCTGAAAATTATCATCATGAATGACATTGTCTCTTACTTCATCTTTCCTAAGGATCACTTGCGTTTTTCGTCTTGCAGGCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCT-GAGGAAGTTCGAGAACAAGTACGTCATCTAGCAATCCTTTTAATGGTTATACCTGATGTCCATTATCTTTTACTGAAAATCTTCACATTGTTTGGTTTTTTCTAGATTGAACTTGTGCATGCTCAAT</genome_strand>
        <mrna_strand>TTTGATTCTCAAAATTGATCAATTCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTTTTTTCTCAGTCAACTCGTCAACCAACTGCCAACCCAGCAAGGATTTGCCTAATCATTGCTGTTTTTCCATCTG-G-GTCTCTCCAAATTTGATTAAATATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATCAAAAATTCCATTTTCCCAACTGGGTTTTGCTCAATTTGGTTAAAGAATCAATTTTTCCAACTGGGTTTTGCTCAATTT..................................................GGTTAAATAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGACTTAATCAATGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTGCCGGAGTGCCGGTCGGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGGGTGAAGCTTTTGAGCCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGNTCATGGACTTGAGTTGTTGAGAATTGCTCTTATTTCAAGGTTGGAGCCTCTCCAATCTGTTAATGAAGGCAGTAAGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACAGATCGAGAACATATCATCAAGGTTCCTAAATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTNGAGGAAG-TCGAGAACAA.......................................................................................ATTGAACTTGTGCATGCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585900" ref_strand="+" ref_description="SGN-E585900 [68365]">
      <seq>gttgatcgatggggtttctggtttgccggagtgccggtcggtgtctaagaggatgtacagtaatttggtgagaagggtgaagcttttgagccctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatggacttgagttgttgagaattgctcttatttcaggtttggagcttctcaaatctgtaaatgaaggcagtaagattcttcaggctttacagatcgagaacatatcatcaaggttcctaaatgtgacagagcaaattgaagatgcactaagcgacattccttacaataagcttgatttatctgaggaagttcaagaacaaattgaacttgtgcatgctcaattcaaaagagccaaaggaaagatggagtcacctgatgagcaacttgaaaaggatttagctatggcacaaagggaacaatatcctgaccccatgattttcaaacggctgtctgagaaactgcatctcaggaccataaatgatctaaagaaggagtcgcttgccatccatgacatggtcatttctagtggtggagatcccgaagagtgtnttgaaacaatagcatacctcctaagaaagctaaaggactgtgcgatgacagagaatcctgaactggatgcccttgagggtgacaagagtttgattaagcccagatctcccgttattccggatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9804" stop="11797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10104" g_stop="10335" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10939" g_stop="11055" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="349" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11143" g_stop="11497" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="704" r_length="355" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E585900" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10104" e_stop="10335"/>
          <exon e_start="10939" e_stop="11055"/>
          <exon e_start="11143" e_stop="11497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGTATTGACTTTTGATTTAATTTTTGTCACTGTTGAATGATTTATGATGACAATTGCTTAGGACTTATCAATCTTGGTTGTAGAAAATCAGTTCAGTATCTGTTAAGAGTGAGTTAAGAGTATCAGGTTGGTTTCGGAATGGACTCGTGGTTTGCTTATATGGACTTGGATAGTTCTCTCTTCTTGAGCTAGATTTTAGGGTTAAGTTAGGTTTAGGTGTCATATCGTTGCATGTTATTATAGCTAGGTCCAACCCTGTTTGGGTTCTCGATCCACGCTCCTGTTGGTCTTGGGCGTGAATGGGGTTGTTAGAGTGGGTTTGAGTCCTATATTGATTGTGGAATGGATTGGTGTTTTGTTTATTTGGAATTAAGACATTCCTTTCGTGTTGAGCTAGCTTTTGAGGTTGAGTTAGGCGCAACTTGATGGTTCAAATAAATCATAAGTAGTTGTTTTCTGCACTAGCTTTACACATTGCATGATGGATGCCGTTTGTATGGTATCATCAAGTTCGTTGCGTCTCTGTGCTGAAAATTATCATCATGAATGACATTGTCTCTTACTTCATCTTTCCTAAGGATCACTTGCGTTTTTCGTCTTGCAGGCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAAGTACGTCATCTAGCAATCCTTTTAATGGTTATACCTGATGTCCATTATCTTTTACTGAAAATCTTCACATTGTTTGGTTTTTTCTAGATTGAACTTGTGCATGCTCAATTTAAAAGAGCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCTATGGCACAAAGGGAACAATATCCTGACCCCCTGATTTTCAAACGGCTGTCTGAGAAACTGCATCTCAGGACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTAGTGGTGGAGATCCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTGAAGGACTGTGCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTGATTAAGCACAGATCTCCCGTTATTCCAGATGACT</genome_strand>
        <mrna_strand>GTTGATCGATGGGGTTTCTGGTTTGCCGGAGTGCCGGTCGGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGGGTGAAGCTTTTGAGCCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGACTTGAGTTGTTGAGAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACAGATCGAGAACATATCATCAAGGTTCCTAAATGTGACAGAGCAAATTGAAGATGCACTAAGCGACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCAAGAACAA.......................................................................................ATTGAACTTGTGCATGCTCAATTCAAAAGAGCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCTATGGCACAAAGGGAACAATATCCTGACCCCATGATTTTCAAACGGCTGTCTGAGAAACTGCATCTCAGGACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTAGTGGTGGAGATCCCGAAGAGTGTNTTGAAACAATAGCATACCTCCTAAGAAAGCTAAAGGACTGTGCGATGACAGAGAATCCTGAACTGGATGCCCTTGAGGGTGACAAGAGTTTGATTAAGCCCAGATCTCCCGTTATTCCGGATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475741" ref_strand="+" ref_description="SGN-E475741 [cSTB-41-J17]">
      <seq>ccggagtgccggtcggtgtctaagaggatgtacagtaatttggtgagaagggtgaagcttttgagccctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatgggcttgagttgttgagaattgctcttatttcaggtttggagcttctcaaatctgtaaatgaaggcagtaagattcttcatgctttacagatcgagaacatatcatcaaggttcctaaatgtgacagagcaaattgaagatgcactaagtcgcattccttacaataagcttgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9829" stop="11334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10129" g_stop="10335" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10939" g_stop="11034" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="303" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E475741" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10129" e_stop="10335"/>
          <exon e_start="10939" e_stop="11034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGTATTGACTTTTGATTTAATTTTTGTCACTGTTGAATGATTTATGATGACAATTGCTTAGGACTTATCAATCTTGGTTGTAGAAAATCAGTTCAGTATCTGTTAAGAGTGAGTTAAGAGTATCAGGTTGGTTTCGGAATGGACTCGTGGTTTGCTTATATGGACTTGGATAGTTCTCTCTTCTTGAGCTAGATTTTAGGGTTAAGTTAGGTTTAGGTGTCATATCGTTGCATGTTATTATAGCTAGGTCCAACCCTGTTTGGGTTCTCGATCCACGCTCCTGTTGGTCTTGGGCGTGAATGGGGTTGTTAGAGTGGGTTTGAGTCCTATATTGATTGTGGAATGGATTGGTGTTTTGTTTATTTGGAATTAAGACATTCCTTTCGTGTTGAGCTAGCTTTTGAGGTTGAGTTAGGCGCAACTTGATGGTTCAAATAAATCATAAGTAGTTGTTTTCTGCACTAGCTTTACACATTGCATGATGGATGCCGTTTGTATGGTATCATCAAGTTCGTTGCGTCTCTGTGCTGAAAATTATCATCATGAATGACATTGTCTCTTACTTCATCTTTCCTAAGGATCACTTGCGTTTTTCGTCTTGCAGGCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTA</genome_strand>
        <mrna_strand>CCGGAGTGCCGGTCGGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGGGTGAAGCTTTTGAGCCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAGAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACAGATCGAGAACATATCATCAAGGTTCCTAAATGTGACAGAGCAAATTGAAGATGCACTAAGTCGCATTCCTTACAATAAGCTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563257" ref_strand="+" ref_description="SGN-E563257 [1698]">
      <seq>cataaatgatctaaagaaggagtcgcttggcatccatgacatggtcatttctaggtggtggagatacccgaagagtgttttgaaacaatagcatacctcctaagaaagctaaaggactgtgcgatgacagagaatcctgaactggatgcccttgagggtgacaagagtttgattaagcacagatctcccgttattccggatgacttccgctgtccaatatcacttgagttgatgaaagatcctgttattgtatctaccggacagacctatgaaaggtcgtgcatccaaaaatggctggatgcaggacacaagacctgccctaagactcagcagacactgttgcatactgcattgactccaaactatgttttgaaaagccctgattgccttgtggtgtgagaataatggtgttgagctgctaaaaaacaagaacttggtangaacaaaagatctggagctggtggttcggactgtgatcgtgcctgctattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="10995" stop="12185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11295" g_stop="11556" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11557" i_stop="11668" i_length="112">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11669" g_stop="11897" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="494" r_length="230" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E563257" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11295" e_stop="11556"/>
          <exon e_start="11669" e_stop="11897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTA-GTGGTGGAGAT-CCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTGAAGGACTGTGCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTGATTAAGCACAGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAGGTTAAGTGTCTTTGCTTTCTTGATAGAACATTTACTTTGATGGATTAAATTAGTTGCTCCTCGTTTTACTGGCTTAAGATTGATGGATGTCTGCTAATTTTTTCATGTGAAGACCTATGAAAGGTCATGCATCCAAAAATGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCGCTGACTCCAAACTACGTTCTGAAGAG-CCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTTGAGCTGCCTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTG-TTGCTATTGATG</genome_strand>
        <mrna_strand>CATAAATGATCTAAAGAAGGAGTCGCTTGGCATCCATGACATGGTCATTTCTAGGTGGTGGAGATACCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTAAAGGACTGTGCGATGACAGAGAATCCTGAACTGGATGCCCTTGAGGGTGACAAGAGTTTGATTAAGCACAGATCTCCCGTTATTCCGGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAG................................................................................................................ACCTATGAAAGGTCGTGCATCCAAAAATGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCATACTGCATTGACTCCAAACTATGTTTTGAAAAGCCCTGATTGCCTTGTGGTGTGAGAATAATGGTGTTGAGCTG-CTAAAAAACAAGAACTTGGTANGAACAAAAGATCTGGAGCTGGTGGTTCGGACTGTGATCGTGCCTGCTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559024" ref_strand="+" ref_description="SGN-E559024 [18456]">
      <seq>acagatctcccggcattccagatgacttccgctgtccaatatcacttgagttgatgaaagatcctgttattgtatctaccggacagacctatgaaaggtcatgcatccaaaaatggctggatgcaggacacaagaactgccctaagactcagcagacactgttgcatactgcattgactccaaactatgttttgaaaagcctgattgccttgtggtgtgagaataatggtgttgagctgcctaaaaaacaaggaacttgtaggaataaaagatctggagctggtggttcggactgtgatcgtgctgctattgatgcgttattacaaaaacttgctaatggtaatccggagcagcaaagagcagctgctggtgagctccgtttggtagcaaaaagaaatgctgattaccgaatctgcattggtggagccggggcaattcctctacttgttgaactactatcatcatcagattctcgtactcaggagcatgctgtcaccgcacttcttaacctatccataaatgaaggtaacaacggaactatcgtaaatgctggtgctatacctgatatagtagatgtactaagaaatggaagcatggaagccaaggaaaatgcagccggttaccttttcagtttatcagtagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="11171" stop="12528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11471" g_stop="11556" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11557" i_stop="11668" i_length="112">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11669" g_stop="12228" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="646" r_length="560" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E559024" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11471" e_stop="11556"/>
          <exon e_start="11669" e_stop="12228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAGGTTAAGTGTCTTTGCTTTCTTGATAGAACATTTACTTTGATGGATTAAATTAGTTGCTCCTCGTTTTACTGGCTTAAGATTGATGGATGTCTGCTAATTTTTTCATGTGAAGACCTATGAAAGGTCATGCATCCAAAAATGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCGCTGACTCCAAACTACGTTCTGAAGAGCCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTTGAGCTGCCTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGA</genome_strand>
        <mrna_strand>ACAGATCTCCCGGCATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAG................................................................................................................ACCTATGAAAGGTCATGCATCCAAAAATGGCTGGATGCAGGACACAAGAACTGCCCTAAGACTCAGCAGACACTGTTGCATACTGCATTGACTCCAAACTATGTTTTGAAAAGCCTGATTGCCTTGTGGTGTGAGAATAATGGTGTTGAGCTGCCTAAAAAACAAGGAACTTGTAGGAATAAAAGATCTGGAGCTGGTGGTTCGGACTGTGATCGTGCTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATCCGGAGCAGCAAAGAGCAGCTGCTGGTGAGCTCCGTTTGGTAGCAAAAAGAAATGCTGATTACCGAATCTGCATTGGTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAGGTAACAACGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCCAAGGAAAATGCAGCCGGTTACCTTTTCAGTTTATCAGTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687919" ref_strand="+" ref_description="SGN-E687919 [T3_tus_81_K08]">
      <seq>ctaaaaaccaaggaacttgtaggaataaaaggactggagctggtggttcggactgtgatcgtgttgctattgatgcgttattacaaaaacttgctaatggtaattcggagcagcaaagagcagctgccggtgagctccgtttgctagcaaaaagaaatgctgataacagagtctgcattgctggagccggggcaattcctctacttgttgaactactatcatcatcagattctcgtactcaggagcatgctgtcaccgcacttcttaacctatccataaatgaaagtaacaagggaactatcgtaaatgctggtgctatacctgatatagtagatgtactaagaaatggaagcatggaagcaagggaaaatgcagccgctacccttttcagtttatcagtagttgatgaaaacaaagtggcaataggagcagctggtgctatcccagcgctgatcgatttgctctgtcatggaaccccaaggggaaaaaaggacgctgccactgctatattcaacctctcaatctatcaaggaaacaaagtcagggcagtacgggcaggaattgttccaccactagtaagattactcaaggatcccgggggtggaatgatggatgaagcacttgcgatattggcaatactagcaagtcatcangagggtaaggcagctattgctcagtctgagccacttcccgtcttagttcangtaattaggacaggttctcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="11523" stop="12849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11823" g_stop="12549" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E687919" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11823" e_stop="12549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCTCCTCG</genome_strand>
        <mrna_strand>CTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCANGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCANGTAATTAGGACAGGTTCTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328326" ref_strand="+" ref_description="SGN-E328326 [cTOC-21-G3]">
      <seq>taaaaaccaaggaacttgtaggaataaaaggactggagctggtggttcggactgtgatcgtgttgctattgatgcgttattacaaaaacttgctaatggtaattcggagcagcaaagagcagctgccggtgagctccgtttgctagcaaaaagaaatgctgataacagagtctgcattgctggagccggggcaattcctctacttgttgaactactatcatcatcagattctcgtactcaggagcatgctgtcaccgcacttcttaacctatccataaatgaaagtaacaagggaactatcgtaaatgctggtgctatacctgatatagtagatgtactaagaaatggaagcatggaagcaagggaaaatgcagccgctacccttttcagtttatcagtagttgatgaaaacaaagtggcaataggagcagctggtgctatcccagcgctgatcgatttgctctgtcatggaaccccaaggggaaaaaaggacgctgccactgctatatttcaccctctcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="11524" stop="12648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11824" g_stop="12348" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E328326" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11824" e_stop="12348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATA-TTCAACCTCTCAATCTA</genome_strand>
        <mrna_strand>TAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTTCACCCTCTC-ATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543414" ref_strand="+" ref_description="SGN-E543414 [TUS-65-D12]">
      <seq>caatcttcaaaaaaattaattacctccatcttcggttcttctacctacaccaccgtaatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgttgccggaggagcatacacaattgtacggcagccttcattctcctcaaacgatcgcggggacaagttaagcgcactcgagacttttcgccggaaaatttctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctttgatcggttctagtttggctaatcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgaggagcgtaaacagctcattgaaaatgctccacacctttgtcatgctttaccgtgcatgactccgtgctttgattggtttgacgctatctactactgggctggcctgaaaatgtatgatttggttgcaggtcgacacctactgcatttgtctaggtattattctgcacaagagtctgttgaattgttttctaccctcgcacgaaatggtaaagataaactctgaagggaactgtgggatattacgatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15455" stop="20088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15755" g_stop="16175" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19788" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="796" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E543414" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15755" e_stop="16175"/>
          <exon e_start="19413" e_stop="19788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGC</genome_strand>
        <mrna_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTTCTACCCTCGCACGAAATGGTAAAGAT-AAACTCTGAAGGGAACTGTGGGATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543455" ref_strand="+" ref_description="SGN-E543455 [TUS-65-E12]">
      <seq>caatcttcaaaaaaattaattacctccatcttcggttcttctacctacaccaccgtaatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgttgccggaggagcatacacaattgtacggcagccttcattctcctcaaacgatcgcggggacaagttaagcgcactcgagacttttcgccggaaaatttctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctttgatcggttctagtttggctaatcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15455" stop="19788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15755" g_stop="16175" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19488" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="497" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E543455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15755" e_stop="16175"/>
          <exon e_start="19413" e_stop="19488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGA</genome_strand>
        <mrna_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304054" ref_strand="+" ref_description="SGN-E304054 [cLEX-6-M3]">
      <seq>aatcttcaaaaaaattaattacctccatcttcggttcttctacctacaccaccgtaatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgttgccggaggagcatacacaattgtacggcagccttcattctcctcaaacgatcgcggggacaagttaagcgcactcgagacttttcgccggaaaatttctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctttgatcggttctagtttggctaatcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgaggagcgtaaacagctcattgaaaatgctccacacctttgtcatgctttaccgtgcatgactccgtgctttgattggtttgacgctatctactactgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15456" stop="19884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15756" g_stop="16175" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19584" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="592" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E304054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15756" e_stop="16175"/>
          <exon e_start="19413" e_stop="19584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGC</genome_strand>
        <mrna_strand>AATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331462" ref_strand="+" ref_description="SGN-E331462 [cTOD-9-P8]">
      <seq>aatcttcaaaaaaattaattacctccatcttcggttcttctacctacaccaccgtaatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgttgccggaggagcatacacaattgtacggcagccttcattctcctcaaacgatcgcggggacaagttaagcgcactcgagacttttcgccggaaaatttctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctttgatcggttctagtttggctaatcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgaggagcgtaaacagctcattgaaaatgctccacacctttgtcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15456" stop="19830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15756" g_stop="16175" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19530" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="538" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E331462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15756" e_stop="16175"/>
          <exon e_start="19413" e_stop="19530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGC</genome_strand>
        <mrna_strand>AATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400481" ref_strand="+" ref_description="SGN-E400481 [cSTC-14-E7]">
      <seq>ctacctacaccaccgtatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgtggccggcggagcatacacaattgtgcggcagccttcattctcctcaaacgatcgcggcgacaagtctaccgcactcgatacttttcgccggaaaattgctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctctgatcgggtctagtttggttaatcctcttgatatactcgttgttggaggcggtgctacgggttgcggagttgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15495" stop="16382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15795" g_stop="16082" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E400481" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15795" e_stop="16082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTG</genome_strand>
        <mrna_strand>CTACCTACACCACCGT-ATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTGGCCGGCGGAGCATACACAATTGTGCGGCAGCCTTCATTCTCCTCAAACGATCGCGGCGACAAGTCTACCGCACTCGATACTTTTCGCCGGAAAATTGCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTCTGATCGGGTCTAGTTTGGTTAATCCTCTTGATATACTCGTTGTTGGAGGCGGTGCTACGGGTTGCGGAGTTGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333664" ref_strand="+" ref_description="SGN-E333664 [cTOD-22-J10]">
      <seq>tcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgaggagcgtaaacagctcattgaaaatgctccacacctttgtcatgctttaccgtgcatgactccgtgctttgattggtttgacgctatctactactgggctggcctgaaaatgtatgatttggttgcaggtcgacacctactgcatttgtctaggtattattctgcacaagagtctgttgaattgtttcctaccctcgcacgaaatggtaaagataaaactctgaagggaactgtggtatattacgatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15727" stop="20090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16027" g_stop="16175" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19790" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="527" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E333664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16027" e_stop="16175"/>
          <exon e_start="19413" e_stop="19790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTG</genome_strand>
        <mrna_strand>TCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700547" ref_strand="+" ref_description="SGN-E700547 [FA13BG04]">
      <seq>ctccgtgctttgattggtttgacgctatctactactgggctggcctgaaaatgtatgatttggttgcaggtcgacacctactgcatttgtctaggtattattctgcacaagagtctgttgaattgtttcctaccctcgcacgaaatggtaaagataaaactctgaagggaactgtggtatattacgatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggctggtgcagctgtgcttaaccatgcagaagtggtatcccttctcaaagatgagggtgatggtagaataattggtgcacgtattcggaataatttatcagggaaggagtttgatgcatatgcaaaagttgttgttaacgctgccgggcctttttgtgattctgtacggacgttagctgataaagatgcaaaacccatgatttgtcccagtagtggtgtacatattatacttcctgattattattctccagacgggatgggcttgattgtccctaaaactaaggatggtcgagtggtctttatgcttccatggttgggcagaacagtagctggtaccactgattcaaacaccagcataacgatgctgccagaacctcatgagaatgagatcgaattcattttggatgccatctctgattatcttaatgttaaggtacgacgtactgatgttctatctgcttggagtggtatccgccctctagcaattgaccccaaggcaagtagtacggcgagcatctccagagatcatgttgtcactgaagaacatcctggtttggttacaattactggtggaaaatggactacgtatagaagcatggcagaagatgcggttgatgcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="19245" stop="23134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19545" g_stop="19886" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20739" g_stop="21070" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="674" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21071" i_stop="22673" i_length="1603">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22674" g_stop="22834" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="835" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E700547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19545" e_stop="19886"/>
          <exon e_start="20739" e_stop="21070"/>
          <exon e_start="22674" e_stop="22834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAGGTACTTCATGAATTTTATTGTAGAATTTGTGTTCCTACTCAGTTCCGTGGTTAAAGTTAGCTTGTAATCCTGGTGGAATGATTAAGGTTGATAAATAGAGTTCCAATATCATGTGCTGTACCACTTGCTCCTAGAAGTCCCATTATATATCTCCATGTATGTACAATTATCTCCATGGATGTGTCCCACCCATTGTGGATTGTAAGTGCCCCACCTCATCATTCTTCTGATGATGATTTTTTGTGAATACAAAGTTACTCCTCAAAAAAAAAATATATGTACAATTATCTGTTTTGCTCGTCTTTGAACCTTTGTCATTTCTTCGAAATGTTTGTCAGTGACATGCAGGATCTTTTTAAGTGTAGTGATTTCCGAGGTTTTGAAAATTTTGAACTTTCTCTTAAAATATTTTTGTTATGGTCCACGGCTGGACTTATGAGTGAAGAGTCTGTTCTAGTATCAAAGATTGGTAATTGATTACCAACCACATAACCAGATGCTCCTGACATAATTTTTACAAGTTGCTTGGCTTAGAGTTATCATGTTTCAAAATATGTATCTGGTCTTATTTGAATTTTCTTGCCATATTTTTGTGGAGTCAAAATATTTGCGTAGAGGTGTTATTGACAAACATTCCAAAATTGGCATAAATCTTTTCGAGTTGGGTGGCAATATCAACTTTAAACAAGCATTTAATCCAACAAAGGCAAGTCACTCTGGCATGAATCTCTGTTCAACTTTTAGACGATTGGAAAATGCTTTGAGTATTATTTATTAATTTCTCCTTTAATCGTTTGCTCCTTTAGTTCATGTCAGTTATCTGCCTCTAAGTTCTCACTCCTTTTCTGACAGGGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCAATAGCATATTTCTCTATCACTTTTAGCTGAGCTAACTATAATCCCATAATTGGTTTTTATGCTTTTTCATTGAACGAAGTCGATGTAAAGAAGCTGAGTTTTTGGATTAAGGTGAAATTTATTACGCTATTCCAGTAAATGTGTAGGAGATATTCAGTATACTATCTTTTAGCCATTTAGTGGCTTCCAGGTTATATATTGGATTATTGACTAAACTATTAGTTAAGTCAGAATTGGATGTAAATTGTTCCTTATAGAAAAAGTCAAGAGTTTGATGTATAGTATCAAGTGCATAAATCGATCGTGGACCATTTCCCACAAGGGGTCTAGTATTGCATCACTGCTATCCAACGTGTTCCATATGTAGACTTTTTTACTGTACATGTTTGATGTAGATTATGTAATAGCATTGAAAAATCTTCTTGTTATCTAAACTATATTGCATAAAGAATGACTTGCCAATTTCATATTTGATAAAACAAATATATGTGCTCTTTCTTATGTGAGGCAAATTGTAAATCTCACAAGTAGATTGCAGTACTACTATGAGATGGTATTAGTACTACTGCTGTGGTCAAACTTTACTTATGTGCATCTGGTGAAGCATTTCAACTTACAACAATGGATGATGGCGTCTCTTGATTTTATTGTTTGATTCCAAAACTTCTTCCTGGAAGCTGAGCTTTAAGTCCCTTGGAGTAATGTGTAGGCTTGTCATTCATATTTTTTTTTTGTTAAAAGATTGCATTGACAAAATGAGGAAAGCTTAGTGACTAATATCAAAAACTCCAGCGATATAGTAGCCAACAAATTGTGTGAGGACCCAGAAATCTTAAGAGGAGAATGTTTGACCCTATGAAAATATTGAGAGAGATGGGGCAGAGAAAGCTCAAAGCAAAATAAGAGAGAAGAAAAAGGCCTTTGTGATGACATGAACTTAAAAGGTATAACTTGAACTTCTTGATAGTTAGAAAGCTCCATCCTTTTGTTCATGAGTCATAGGAGCTTTGCTTGTTAGTAGATATGTCTGTGTTGACACTCTCGATGATGAGGGGGATACATTTCCTATGTACACAGGCACGCTCGATACTTGAATCATAATATCTCAGTAGCTTATGGATTTATTTCTTGTTCAGTGAGCAGCCTCGAAGTTGTCAATACAGTGAGCGTGTTTGTCATACACAGTTATTGCTATAACAGTTTACTTATTTTTTCATTTAGTATTTGTAAGATGGCTACAACCTGTATTTGACTGTTTAGTTTCCCTATTTTCCTGGAGGCAACAGTTTCTCTATTTTCCTGGAGGCAACCAAAACTCCAGTTTAAATAGTTTTTCTTGTTTTTATGTCACCTATAGTGTCCTTGTCTATCGAGAATGATGTTAGAATTCAAATTTAGGTACGACGTACTGATGTTCTATCTGCTTGGAGTGGTATCCGCCCTCTAGCAATTGACCCCAAGGCAAGTAGTACGGCGAGCATCTCCAGAGATCATGTTGTCACTGAAGAACATCCTGGTTTGGTTACAATTACTGGTGGAAAATGGACTACGTATAGAAG</genome_strand>
        <mrna_strand>CTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGACGTACTGATGTTCTATCTGCTTGGAGTGGTATCCGCCCTCTAGCAATTGACCCCAAGGCAAGTAGTACGGCGAGCATCTCCAGAGATCATGTTGTCACTGAAGAACATCCTGGTTTGGTTACAATTACTGGTGGAAAATGGACTACGTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267844" ref_strand="+" ref_description="SGN-E267844 [cLEI-12-C14]">
      <seq>ttggttgcaggtcgacacctactgcatttgtctaggtattattctgcacaagagtctgttgaattgtttcctaccctcgcacgaaatggtaaagataaaactctgaagggaactgtggtatattacgatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggctggtgcagctgtgcttaaccatgcagaagtggtatcccttctcaaagatgagggtgatggtagaataattggtgcacgtattcggaataatttatcagggaaggagtttgatgcatatgcaaaagttgttgttaacgctgccgggcctttttgtgattctgtacggacgttagctgataaagatgcaaaacccatgatttgtcccagtagtggtgtacatattatacttcctgattattattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="19304" stop="21184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19604" g_stop="19886" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20739" g_stop="20884" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="429" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E267844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19604" e_stop="19886"/>
          <exon e_start="20739" e_stop="20884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAGGTACTTCATGAATTTTATTGTAGAATTTGTGTTCCTACTCAGTTCCGTGGTTAAAGTTAGCTTGTAATCCTGGTGGAATGATTAAGGTTGATAAATAGAGTTCCAATATCATGTGCTGTACCACTTGCTCCTAGAAGTCCCATTATATATCTCCATGTATGTACAATTATCTCCATGGATGTGTCCCACCCATTGTGGATTGTAAGTGCCCCACCTCATCATTCTTCTGATGATGATTTTTTGTGAATACAAAGTTACTCCTCAAAAAAAAAATATATGTACAATTATCTGTTTTGCTCGTCTTTGAACCTTTGTCATTTCTTCGAAATGTTTGTCAGTGACATGCAGGATCTTTTTAAGTGTAGTGATTTCCGAGGTTTTGAAAATTTTGAACTTTCTCTTAAAATATTTTTGTTATGGTCCACGGCTGGACTTATGAGTGAAGAGTCTGTTCTAGTATCAAAGATTGGTAATTGATTACCAACCACATAACCAGATGCTCCTGACATAATTTTTACAAGTTGCTTGGCTTAGAGTTATCATGTTTCAAAATATGTATCTGGTCTTATTTGAATTTTCTTGCCATATTTTTGTGGAGTCAAAATATTTGCGTAGAGGTGTTATTGACAAACATTCCAAAATTGGCATAAATCTTTTCGAGTTGGGTGGCAATATCAACTTTAAACAAGCATTTAATCCAACAAAGGCAAGTCACTCTGGCATGAATCTCTGTTCAACTTTTAGACGATTGGAAAATGCTTTGAGTATTATTTATTAATTTCTCCTTTAATCGTTTGCTCCTTTAGTTCATGTCAGTTATCTGCCTCTAAGTTCTCACTCCTTTTCTGACAGGGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCT</genome_strand>
        <mrna_strand>TTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543413" ref_strand="+" ref_description="SGN-E543413 [TUS-65-D12](-)">
      <seq>gatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggctggtgcagctgtgcttaaccatgcagaagtggtatcccttctcaaagatgagggtgatggtagaataattggtgcacgtattcggaataatttatcagggaaggagtttgatgcatatgcaaaagttgttgttaacgctgccgggcctttttgtgattctgtacggacgttagctgataaagatgcaaaacccatgatttgtcccagtagtggtgtacatattatacttcctgattattattctccagacgggatgggcttgattgtccctaaaactaaggatggtcgagtggtctttatgcttccatggttgggcagaacagtagctggtaccactgattcaaacaccagcataacgatgctgccagaacctcatgagaatgagatcgaattcattttggatgccatctctgattatcttaatgttaaggtgtgttgatttctagcaatcctgacatttattgtttttcttttaatatcatagtgcctctaatataaatccctgtaagtcaaatatttatataatcattattcctcattaggcatctgaaaaaaaggtctatattgtgaccaacttttgcctcttgatctctgttttggtttgatattgaattcaaatgttactatcctgatcgaaaaaaaaaaaaaaaaaaaccccttttttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="19430" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19730" g_stop="19886" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20739" g_stop="21275" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="694" r_length="537" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="714"/>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E543413" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19730" e_stop="19886"/>
          <exon e_start="20739" e_stop="21275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAGGTACTTCATGAATTTTATTGTAGAATTTGTGTTCCTACTCAGTTCCGTGGTTAAAGTTAGCTTGTAATCCTGGTGGAATGATTAAGGTTGATAAATAGAGTTCCAATATCATGTGCTGTACCACTTGCTCCTAGAAGTCCCATTATATATCTCCATGTATGTACAATTATCTCCATGGATGTGTCCCACCCATTGTGGATTGTAAGTGCCCCACCTCATCATTCTTCTGATGATGATTTTTTGTGAATACAAAGTTACTCCTCAAAAAAAAAATATATGTACAATTATCTGTTTTGCTCGTCTTTGAACCTTTGTCATTTCTTCGAAATGTTTGTCAGTGACATGCAGGATCTTTTTAAGTGTAGTGATTTCCGAGGTTTTGAAAATTTTGAACTTTCTCTTAAAATATTTTTGTTATGGTCCACGGCTGGACTTATGAGTGAAGAGTCTGTTCTAGTATCAAAGATTGGTAATTGATTACCAACCACATAACCAGATGCTCCTGACATAATTTTTACAAGTTGCTTGGCTTAGAGTTATCATGTTTCAAAATATGTATCTGGTCTTATTTGAATTTTCTTGCCATATTTTTGTGGAGTCAAAATATTTGCGTAGAGGTGTTATTGACAAACATTCCAAAATTGGCATAAATCTTTTCGAGTTGGGTGGCAATATCAACTTTAAACAAGCATTTAATCCAACAAAGGCAAGTCACTCTGGCATGAATCTCTGTTCAACTTTTAGACGATTGGAAAATGCTTTGAGTATTATTTATTAATTTCTCCTTTAATCGTTTGCTCCTTTAGTTCATGTCAGTTATCTGCCTCTAAGTTCTCACTCCTTTTCTGACAGGGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</genome_strand>
        <mrna_strand>GATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304191" ref_strand="+" ref_description="SGN-E304191 [cLEX-6-M3](-)">
      <seq>tgcatatgcaaaagttgttgttaacgctgccgggcctttttgtgattctgtacggacgttagctgataaagatgcaaaacccatgatttgtcccagtagtggtgtacatattatacttcctgattattattctccagacgggatgggcttgattgtccctaaaactaaggatggtcgagtggtctttatgcttccatggttgggcagaacagtagctggtaccactgattcaaacaccagcataacgatgctgccagaacctcatgagaatgagatcgaattcattttggatgccatctctgattatcttaatgttaaggtgtgttgatttctagcaatcctgacatttattgtttttcttttaatatcatagtgcctctaatataaatccctgtaagtcaaatatttatataatcattattcctcattaggcatctgaaaaaaaggtctatattgtgaccaacttttgcctcttgatctctgttttggtttgatattgaattcaaatgttactatcctgatcaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="20452" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20752" g_stop="21275" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="557"/>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-E304191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20752" e_stop="21275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</genome_strand>
        <mrna_strand>TGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6923" PGL_stop="7324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6923" e_stop="7324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="6923" e_stop="7324" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6923" stop="7324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAGTATTGTAAAACCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTGATTATATAATTGAGATTATATTAAGCATGATGAAGCTATTGAATCCCAAATCTTGATAAAAAACCTAATCTCTTGTTAATGATGATGCCTTGGTAAGGGAGAAGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTATAAGAGAAGGCTTGATGACTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTTTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATG</gDNA_template>
            <first_frame> E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  T  C  Y  V  L  N  C  M  L  A  *  T  *  L  Y  N  *  D  Y  I  K  H  D  E  A  I  E  S  Q  I  L  I  K  N  L  I  S  C  *  *  *  C  L  G  K  G  E  A  *  *  T  K  V  M  R  L  M  M  P  W  Y  K  R  R  L  D  D  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  F  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  M </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  I  D  S  I  V  K  P  A  M  C  L  I  V  C  L  H  E  R  D  Y  I  I  E  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  T  *  S  L  V  N  D  D  A  L  V  R  E  K  L  D  E  L  K  *  *  D  *  *  C  L  G  I  R  E  G  L  M  T  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  V  L  *  N  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  R  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  K  P  N  L  L  L  M  M  M  P  W  *  G  R  S  L  M  N  *  S  N  E  I  D  D  A  L  V  *  E  K  A  *  *  L  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  F  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0096D22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7706" PGL_stop="7370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7706" e_stop="7370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="7706" e_stop="7370" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7706" stop="7370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  F  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  L  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  Q  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  Y  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  S  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0096D22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7380" PGL_stop="7858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7380" e_stop="7858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="7380" e_stop="7858" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7380" stop="7617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7381" stop="7858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAATGTGCCGTCGTCTTCGATTCAACCGTAACTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGTTAACGTTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  R  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  K  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  I  Q  P  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  R  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  M  C  R  R  L  R  F  N  R  N  S  S  Q  S  S  L  L  R  I  S  G  *  V  N  V  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  E  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  *  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  C  A  V  V  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  T  F  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7643" stop="7858"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILFSILSWPMISTQYPCFVLTPTFMFFFLLFVECSKCAVVFDSTVTLASLHYSGYQGELTFLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9661" PGL_stop="12549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9661" e_stop="10335"/>
            <exon e_start="10939" e_stop="11055"/>
            <exon e_start="11143" e_stop="11556"/>
            <exon e_start="11669" e_stop="12549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.973" e_score="0.977"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9661" e_stop="10335" e_length="675"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10939" e_stop="11055" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="11143" e_stop="11556" e_length="414"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.973">
            <gDNA_intron_boundary i_start="11557" i_stop="11668" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="11669" e_stop="12549" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9661" stop="10255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9671" stop="10282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9691" stop="10335"/>
              <exon start="10939" stop="11055"/>
              <exon start="11143" stop="11169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10104" stop="10335"/>
              <exon start="10939" stop="11055"/>
              <exon start="11143" stop="11497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10129" stop="10335"/>
              <exon start="10939" stop="11034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11295" stop="11556"/>
              <exon start="11669" stop="11897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11471" stop="11556"/>
              <exon start="11669" stop="12228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11823" stop="12549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11824" stop="12348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG : GCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAA : ATTGAACTTGTGCATGCTCAATTTAAAAGAGCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCTATGGCACAAAGGGAACAATATCCTGACCCCCTGATTTTCAAACGGCTGTCTGAGAAACTGCATCTCAGGACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTAGTGGTGGAGATCCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTGAAGGACTGTGCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTGATTAAGCACAGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAG : ACCTATGAAAGGTCATGCATCCAAAAATGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCGCTGACTCCAAACTACGTTCTGAAGAGCCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTTGAGCTGCCTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCTCCTCG</gDNA_template>
            <first_frame> M  L  H  L  L  C  F  F  L  V  *  T  K  S  F  E  F  S  L  *  F  S  K  F  I  K  S  L  S  L  K  S  P  Q  E  P  K  K  L  M  S  F  L  S  Q  L  I  N  Q  L  P  T  Q  Q  G  F  V  *  S  L  L  F  V  H  L  C  V  S  L  N  L  I  K  D  S  I  F  P  S  G  C  L  S  I  *  *  K  N  P  F  F  H  L  G  F  A  Q  F  G  *  R  I  G  F  S  S  W  V  L  L  N  L  V  K  E  S  I  L  S  S  W  G  L  L  N  L  V  K  E  S  I  F  V  H  M  G  H  Q  K  E  E  L  I  N  E  L  T  E  L  I  D  G  V  S  G  L  P  E  C  R  S  V  S  K  R  M  Y  S  N  L  V  R  R  V  K  L  L  S  P  L  V  E  D  L  K  D  S  D  G  V  E  V  G  D  D  V  V  H  G  L  E  L  L  K  I  A  L  I  S  G  L  E  L  L  K  S  V  N  E  G  S  K  I  L  Q  :  A  L  Q  I  E  N  I  S  S  R  F  L  D  V  T  E  Q  I  E  D  A  L  S  H  I  P  Y  N  K  L  D  L  S  E  E  V  R  E  Q  :  I  E  L  V  H  A  Q  F  K  R  A  K  G  K  M  E  S  P  D  E  Q  L  E  K  D  L  A  M  A  Q  R  E  Q  Y  P  D  P  L  I  F  K  R  L  S  E  K  L  H  L  R  T  I  N  D  L  K  K  E  S  L  A  I  H  D  M  V  I  S  S  G  G  D  P  E  E  C  F  E  T  I  A  Y  L  L  R  K  L  K  D  C  A  M  T  E  N  P  E  L  D  A  L  E  G  D  K  S  L  I  K  H  R  S  P  V  I  P  D  D  F  R  C  P  I  S  L  E  L  M  K  D  P  V  I  V  S  T  G  Q  :  T  Y  E  R  S  C  I  Q  K  W  L  D  A  G  H  K  T  C  P  K  T  Q  Q  T  L  L  H  T  A  L  T  P  N  Y  V  L  K  S  L  I  A  L  W  C  E  S  N  G  V  E  L  P  K  N  Q  G  T  C  R  N  K  R  T  G  A  G  G  S  D  C  D  R  V  A  I  D  A  L  L  Q  K  L  A  N  G  N  S  E  Q  Q  R  A  A  A  G  E  L  R  L  L  A  K  R  N  A  D  N  R  V  C  I  A  G  A  G  A  I  P  L  L  V  E  L  L  S  S  S  D  S  R  T  Q  E  H  A  V  T  A  L  L  N  L  S  I  N  E  S  N  K  G  T  I  V  N  A  G  A  I  P  D  I  V  D  V  L  R  N  G  S  M  E  A  R  E  N  A  A  A  T  L  F  S  L  S  V  V  D  E  N  K  V  A  I  G  A  A  G  A  I  P  A  L  I  D  L  L  C  H  G  T  P  R  G  K  K  D  A  A  T  A  I  F  N  L  S  I  Y  Q  G  N  K  V  R  A  V  R  A  G  I  V  P  P  L  V  R  L  L  K  D  P  G  G  G  M  M  D  E  A  L  A  I  L  A  I  L  A  S  H  Q  E  G  K  A  A  I  A  Q  S  E  P  L  P  V  L  V  Q  V  I  R  T  G  S  P   </first_frame>
            <second_frame>  C  F  T  C  F  V  F  S  L  C  E  Q  R  A  L  N  F  L  F  D  S  Q  N  S  S  N  L  *  A  *  N  H  L  K  N  P  K  N  S  C  L  F  S  V  N  S  S  T  N  C  Q  P  S  K  D  L  Y  N  H  C  C  L  S  I  C  V  C  L  *  I  *  L  K  I  P  F  F  H  L  G  V  S  Q  F  D  K  K  I  H  F  S  I  W  V  L  L  N  L  V  K  E  S  V  F  P  A  G  F  C  S  I  W  L  K  N  R  F  Y  P  A  G  V  C  S  I  W  L  K  N  R  F  L  C  I  W  V  I  R  K  R  N  *  S  T  S  *  R  S  *  S  M  G  F  L  V  Y  R  S  A  G  Q  C  L  R  G  C  T  V  I  W  *  E  E  *  S  F  *  V  L  *  L  R  I  *  K  I  V  M  V  L  R  L  E  M  M  L  F  M  G  L  S  C  *  K  L  L  L  F  Q  V  W  S  F  S  N  L  *  M  K  A  V  R  F  F  R :   L  Y  R  S  R  T  Y  H  Q  G  F  *  M  *  Q  S  K  L  K  M  H  *  A  T  F  L  T  I  S  L  I  Y  L  R  K  F  E  N  K :   L  N  L  C  M  L  N  L  K  E  P  K  E  R  W  S  H  L  M  S  N  L  K  R  I  *  L  W  H  K  G  N  N  I  L  T  P  *  F  S  N  G  C  L  R  N  C  I  S  G  P  *  M  I  *  R  R  S  R  L  P  S  M  T  W  S  F  L  V  V  E  I  P  K  S  V  L  K  Q  *  H  T  S  *  E  S  *  R  T  V  Q  *  Q  R  I  L  N  W  M  L  L  R  V  T  R  V  *  L  S  T  D  L  P  L  F  Q  M  T  S  A  V  Q  Y  H  L  S  *  *  K  I  L  L  L  Y  L  P  D  R :   P  M  K  G  H  A  S  K  N  G  W  M  Q  D  T  R  P  A  L  R  L  S  R  H  C  C  T  L  R  *  L  Q  T  T  F  *  R  A  *  L  R  C  G  V  R  V  M  V  L  S  C  L  K  T  K  E  L  V  G  I  K  G  L  E  L  V  V  R  T  V  I  V  L  L  L  M  R  Y  Y  K  N  L  L  M  V  I  R  S  S  K  E  Q  L  P  V  S  S  V  C  *  Q  K  E  M  L  I  T  E  S  A  L  L  E  P  G  Q  F  L  Y  L  L  N  Y  Y  H  H  Q  I  L  V  L  R  S  M  L  S  P  H  F  L  T  Y  P  *  M  K  V  T  R  E  L  S  *  M  L  V  L  Y  L  I  *  *  M  Y  *  E  M  E  A  W  K  Q  G  K  M  Q  P  L  P  F  S  V  Y  Q  *  L  M  K  T  K  W  Q  *  E  Q  L  V  L  S  Q  R  *  S  I  C  S  V  M  E  P  Q  G  E  K  R  T  L  P  L  L  Y  S  T  S  Q  S  I  K  E  T  K  S  G  Q  Y  G  Q  E  L  F  H  H  *  *  D  Y  S  R  I  P  G  V  E  *  W  M  K  H  L  R  Y  W  Q  Y  *  Q  V  I  R  R  V  R  Q  L  L  L  S  L  S  H  F  P  S  *  F  R  *  L  G  Q  V  L  L  </second_frame>
            <third_frame>   A  S  P  A  L  F  F  P  C  V  N  K  E  L  *  I  F  S  L  I  L  K  I  H  Q  I  F  E  L  E  I  T  S  R  T  Q  K  T  H  V  F  S  Q  S  T  H  Q  P  T  A  N  P  A  R  I  C  I  I  I  A  V  C  P  S  V  C  V  S  K  F  D  *  R  F  H  F  S  I  W  V  S  L  N  L  I  K  K  S  I  F  P  S  G  F  C  S  I  W  L  K  N  R  F  F  Q  L  G  F  A  Q  F  G  *  R  I  D  F  I  Q  L  G  F  A  Q  F  G  *  R  I  D  F  C  A  Y  G  S  S  E  R  G  I  N  Q  R  A  D  G  V  N  R  W  G  F  W  F  T  G  V  P  V  S  V  *  E  D  V  Q  *  F  G  E  K  S  E  A  F  E  S  F  S  *  G  F  E  R  *  *  W  C  *  G  W  R  *  C  C  S  W  A  *  V  V  E  N  C  S  Y  F  R  F  G  A  S  Q  I  C  K  *  R  Q  *  D  S  S   : G  F  T  D  R  E  H  I  I  K  V  S  R  C  D  R  A  N  *  R  C  T  K  P  H  S  L  Q  *  A  *  F  I  *  G  S  S  R  T   : N  *  T  C  A  C  S  I  *  K  S  Q  R  K  D  G  V  T  *  *  A  T  *  K  G  F  S  Y  G  T  K  G  T  I  S  *  P  P  D  F  Q  T  A  V  *  E  T  A  S  Q  D  H  K  *  S  K  E  G  V  A  C  H  P  *  H  G  H  F  *  W  W  R  S  R  R  V  F  *  N  N  S  I  P  P  K  K  A  E  G  L  C  N  D  R  E  S  *  T  G  C  S  *  G  *  Q  E  F  D  *  A  Q  I  S  R  Y  S  R  *  L  P  L  S  N  I  T  *  V  D  E  R  S  C  Y  C  I  Y  R  T   : D  L  *  K  V  M  H  P  K  M  A  G  C  R  T  Q  D  L  P  *  D  S  A  D  T  V  A  H  C  A  D  S  K  L  R  S  E  E  P  D  C  V  V  V  *  E  *  W  C  *  A  A  *  K  P  R  N  L  *  E  *  K  D  W  S  W  W  F  G  L  *  S  C  C  Y  *  C  V  I  T  K  T  C  *  W  *  F  G  A  A  K  S  S  C  R  *  A  P  F  A  S  K  K  K  C  *  *  Q  S  L  H  C  W  S  R  G  N  S  S  T  C  *  T  T  I  I  I  R  F  S  Y  S  G  A  C  C  H  R  T  S  *  P  I  H  K  *  K  *  Q  G  N  Y  R  K  C  W  C  Y  T  *  Y  S  R  C  T  K  K  W  K  H  G  S  K  G  K  C  S  R  Y  P  F  Q  F  I  S  S  *  *  K  Q  S  G  N  R  S  S  W  C  Y  P  S  A  D  R  F  A  L  S  W  N  P  K  G  K  K  G  R  C  H  C  Y  I  Q  P  L  N  L  S  R  K  Q  S  Q  G  S  T  G  R  N  C  S  T  T  S  K  I  T  Q  G  S  R  G  W  N  D  G  *  S  T  C  D  I  G  N  T  S  K  S  S  G  G  *  G  S  Y  C  S  V  *  A  T  S  R  L  S  S  G  N  *  D  R  F  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9961" stop="10335"/>
                    <exon start="10939" stop="11055"/>
                    <exon start="11143" stop="11556"/>
                    <exon start="11669" stop="12547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1785</number_coding_nucleotides>
                  <number_encoded_amino_acids>595</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIGFSSWVLLNLVKESILSSWGLLNLVKESIFVHMGHQKEELINELTELIDGVSGLPECRSVSKRMYSNLVRRVKLLSPLVEDLKDSDGVEVGDDVVHGLELLKIALISGLELLKSVNEGSKILQALQIENISSRFLDVTEQIEDALSHIPYNKLDLSEEVREQIELVHAQFKRAKGKMESPDEQLEKDLAMAQREQYPDPLIFKRLSEKLHLRTINDLKKESLAIHDMVISSGGDPEECFETIAYLLRKLKDCAMTENPELDALEGDKSLIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKNQGTCRNKRTGAGGSDCDRVAIDALLQKLANGNSEQQRAAAGELRLLAKRNADNRVCIAGAGAIPLLVELLSSSDSRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIDLLCHGTPRGKKDAATAIFNLSIYQGNKVRAVRAGIVPPLVRLLKDPGGGMMDEALAILAILASHQEGKAAIAQSEPLPVLVQVIRTGSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9716" e_stop="9995"/>
            <exon e_start="10046" e_stop="10335"/>
            <exon e_start="10939" e_stop="11055"/>
            <exon e_start="11143" e_stop="11556"/>
            <exon e_start="11669" e_stop="12549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.897"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.966"/>
          <exon-intron don_prob="0.981" acc_prob="0.973" e_score="0.977"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="9716" e_stop="9995" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9996" i_stop="10045" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="10046" e_stop="10335" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="10939" e_stop="11055" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="11143" e_stop="11556" e_length="414"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.973">
            <gDNA_intron_boundary i_start="11557" i_stop="11668" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="11669" e_stop="12549" e_length="881"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9716" stop="9995"/>
              <exon start="10046" stop="10335"/>
              <exon start="10939" stop="11055"/>
              <exon start="11143" stop="11164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10104" stop="10335"/>
              <exon start="10939" stop="11055"/>
              <exon start="11143" stop="11497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10129" stop="10335"/>
              <exon start="10939" stop="11034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11295" stop="11556"/>
              <exon start="11669" stop="11897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11471" stop="11556"/>
              <exon start="11669" stop="12228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11823" stop="12549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11824" stop="12348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTT : AATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG : GCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAA : ATTGAACTTGTGCATGCTCAATTTAAAAGAGCCAAAGGAAAGATGGAGTCACCTGATGAGCAACTTGAAAAGGATTTAGCTATGGCACAAAGGGAACAATATCCTGACCCCCTGATTTTCAAACGGCTGTCTGAGAAACTGCATCTCAGGACCATAAATGATCTAAAGAAGGAGTCGCTTGCCATCCATGACATGGTCATTTCTAGTGGTGGAGATCCCGAAGAGTGTTTTGAAACAATAGCATACCTCCTAAGAAAGCTGAAGGACTGTGCAATGACAGAGAATCCTGAACTGGATGCTCTTGAGGGTGACAAGAGTTTGATTAAGCACAGATCTCCCGTTATTCCAGATGACTTCCGCTGTCCAATATCACTTGAGTTGATGAAAGATCCTGTTATTGTATCTACCGGACAG : ACCTATGAAAGGTCATGCATCCAAAAATGGCTGGATGCAGGACACAAGACCTGCCCTAAGACTCAGCAGACACTGTTGCACACTGCGCTGACTCCAAACTACGTTCTGAAGAGCCTGATTGCGTTGTGGTGTGAGAGTAATGGTGTTGAGCTGCCTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCTCCTCG</gDNA_template>
            <first_frame> F  D  S  Q  N  S  S  N  L  *  A  *  N  H  L  K  N  P  K  N  S  C  L  F  S  V  N  S  S  T  N  C  Q  P  S  K  D  L  Y  N  H  C  C  L  S  I  C  V  C  L  *  I  *  L  K  I  P  F  F  H  L  G  V  S  Q  F  D  K  K  I  H  F  S  I  W  V  L  L  N  L  V  K  E  S  V  F  P  A  G  F  C  S  I   : *  S  I  F  V  H  M  G  H  Q  K  E  E  L  I  N  E  L  T  E  L  I  D  G  V  S  G  L  P  E  C  R  S  V  S  K  R  M  Y  S  N  L  V  R  R  V  K  L  L  S  P  L  V  E  D  L  K  D  S  D  G  V  E  V  G  D  D  V  V  H  G  L  E  L  L  K  I  A  L  I  S  G  L  E  L  L  K  S  V  N  E  G  S  K  I  L  Q  :  A  L  Q  I  E  N  I  S  S  R  F  L  D  V  T  E  Q  I  E  D  A  L  S  H  I  P  Y  N  K  L  D  L  S  E  E  V  R  E  Q  :  I  E  L  V  H  A  Q  F  K  R  A  K  G  K  M  E  S  P  D  E  Q  L  E  K  D  L  A  M  A  Q  R  E  Q  Y  P  D  P  L  I  F  K  R  L  S  E  K  L  H  L  R  T  I  N  D  L  K  K  E  S  L  A  I  H  D  M  V  I  S  S  G  G  D  P  E  E  C  F  E  T  I  A  Y  L  L  R  K  L  K  D  C  A  M  T  E  N  P  E  L  D  A  L  E  G  D  K  S  L  I  K  H  R  S  P  V  I  P  D  D  F  R  C  P  I  S  L  E  L  M  K  D  P  V  I  V  S  T  G  Q  :  T  Y  E  R  S  C  I  Q  K  W  L  D  A  G  H  K  T  C  P  K  T  Q  Q  T  L  L  H  T  A  L  T  P  N  Y  V  L  K  S  L  I  A  L  W  C  E  S  N  G  V  E  L  P  K  N  Q  G  T  C  R  N  K  R  T  G  A  G  G  S  D  C  D  R  V  A  I  D  A  L  L  Q  K  L  A  N  G  N  S  E  Q  Q  R  A  A  A  G  E  L  R  L  L  A  K  R  N  A  D  N  R  V  C  I  A  G  A  G  A  I  P  L  L  V  E  L  L  S  S  S  D  S  R  T  Q  E  H  A  V  T  A  L  L  N  L  S  I  N  E  S  N  K  G  T  I  V  N  A  G  A  I  P  D  I  V  D  V  L  R  N  G  S  M  E  A  R  E  N  A  A  A  T  L  F  S  L  S  V  V  D  E  N  K  V  A  I  G  A  A  G  A  I  P  A  L  I  D  L  L  C  H  G  T  P  R  G  K  K  D  A  A  T  A  I  F  N  L  S  I  Y  Q  G  N  K  V  R  A  V  R  A  G  I  V  P  P  L  V  R  L  L  K  D  P  G  G  G  M  M  D  E  A  L  A  I  L  A  I  L  A  S  H  Q  E  G  K  A  A  I  A  Q  S  E  P  L  P  V  L  V  Q  V  I  R  T  G  S  P   </first_frame>
            <second_frame>  L  I  L  K  I  H  Q  I  F  E  L  E  I  T  S  R  T  Q  K  T  H  V  F  S  Q  S  T  H  Q  P  T  A  N  P  A  R  I  C  I  I  I  A  V  C  P  S  V  C  V  S  K  F  D  *  R  F  H  F  S  I  W  V  S  L  N  L  I  K  K  S  I  F  P  S  G  F  C  S  I  W  L  K  N  R  F  F  Q  L  G  F  A  Q  F  :  N  R  F  L  C  I  W  V  I  R  K  R  N  *  S  T  S  *  R  S  *  S  M  G  F  L  V  Y  R  S  A  G  Q  C  L  R  G  C  T  V  I  W  *  E  E  *  S  F  *  V  L  *  L  R  I  *  K  I  V  M  V  L  R  L  E  M  M  L  F  M  G  L  S  C  *  K  L  L  L  F  Q  V  W  S  F  S  N  L  *  M  K  A  V  R  F  F  R :   L  Y  R  S  R  T  Y  H  Q  G  F  *  M  *  Q  S  K  L  K  M  H  *  A  T  F  L  T  I  S  L  I  Y  L  R  K  F  E  N  K :   L  N  L  C  M  L  N  L  K  E  P  K  E  R  W  S  H  L  M  S  N  L  K  R  I  *  L  W  H  K  G  N  N  I  L  T  P  *  F  S  N  G  C  L  R  N  C  I  S  G  P  *  M  I  *  R  R  S  R  L  P  S  M  T  W  S  F  L  V  V  E  I  P  K  S  V  L  K  Q  *  H  T  S  *  E  S  *  R  T  V  Q  *  Q  R  I  L  N  W  M  L  L  R  V  T  R  V  *  L  S  T  D  L  P  L  F  Q  M  T  S  A  V  Q  Y  H  L  S  *  *  K  I  L  L  L  Y  L  P  D  R :   P  M  K  G  H  A  S  K  N  G  W  M  Q  D  T  R  P  A  L  R  L  S  R  H  C  C  T  L  R  *  L  Q  T  T  F  *  R  A  *  L  R  C  G  V  R  V  M  V  L  S  C  L  K  T  K  E  L  V  G  I  K  G  L  E  L  V  V  R  T  V  I  V  L  L  L  M  R  Y  Y  K  N  L  L  M  V  I  R  S  S  K  E  Q  L  P  V  S  S  V  C  *  Q  K  E  M  L  I  T  E  S  A  L  L  E  P  G  Q  F  L  Y  L  L  N  Y  Y  H  H  Q  I  L  V  L  R  S  M  L  S  P  H  F  L  T  Y  P  *  M  K  V  T  R  E  L  S  *  M  L  V  L  Y  L  I  *  *  M  Y  *  E  M  E  A  W  K  Q  G  K  M  Q  P  L  P  F  S  V  Y  Q  *  L  M  K  T  K  W  Q  *  E  Q  L  V  L  S  Q  R  *  S  I  C  S  V  M  E  P  Q  G  E  K  R  T  L  P  L  L  Y  S  T  S  Q  S  I  K  E  T  K  S  G  Q  Y  G  Q  E  L  F  H  H  *  *  D  Y  S  R  I  P  G  V  E  *  W  M  K  H  L  R  Y  W  Q  Y  *  Q  V  I  R  R  V  R  Q  L  L  L  S  L  S  H  F  P  S  *  F  R  *  L  G  Q  V  L  L  </second_frame>
            <third_frame>   *  F  S  K  F  I  K  S  L  S  L  K  S  P  Q  E  P  K  K  L  M  S  F  L  S  Q  L  I  N  Q  L  P  T  Q  Q  G  F  V  *  S  L  L  F  V  H  L  C  V  S  L  N  L  I  K  D  S  I  F  P  S  G  C  L  S  I  *  *  K  N  P  F  F  H  L  G  F  A  Q  F  G  *  R  I  G  F  S  S  W  V  L  L  N  L :   I  D  F  C  A  Y  G  S  S  E  R  G  I  N  Q  R  A  D  G  V  N  R  W  G  F  W  F  T  G  V  P  V  S  V  *  E  D  V  Q  *  F  G  E  K  S  E  A  F  E  S  F  S  *  G  F  E  R  *  *  W  C  *  G  W  R  *  C  C  S  W  A  *  V  V  E  N  C  S  Y  F  R  F  G  A  S  Q  I  C  K  *  R  Q  *  D  S  S   : G  F  T  D  R  E  H  I  I  K  V  S  R  C  D  R  A  N  *  R  C  T  K  P  H  S  L  Q  *  A  *  F  I  *  G  S  S  R  T   : N  *  T  C  A  C  S  I  *  K  S  Q  R  K  D  G  V  T  *  *  A  T  *  K  G  F  S  Y  G  T  K  G  T  I  S  *  P  P  D  F  Q  T  A  V  *  E  T  A  S  Q  D  H  K  *  S  K  E  G  V  A  C  H  P  *  H  G  H  F  *  W  W  R  S  R  R  V  F  *  N  N  S  I  P  P  K  K  A  E  G  L  C  N  D  R  E  S  *  T  G  C  S  *  G  *  Q  E  F  D  *  A  Q  I  S  R  Y  S  R  *  L  P  L  S  N  I  T  *  V  D  E  R  S  C  Y  C  I  Y  R  T   : D  L  *  K  V  M  H  P  K  M  A  G  C  R  T  Q  D  L  P  *  D  S  A  D  T  V  A  H  C  A  D  S  K  L  R  S  E  E  P  D  C  V  V  V  *  E  *  W  C  *  A  A  *  K  P  R  N  L  *  E  *  K  D  W  S  W  W  F  G  L  *  S  C  C  Y  *  C  V  I  T  K  T  C  *  W  *  F  G  A  A  K  S  S  C  R  *  A  P  F  A  S  K  K  K  C  *  *  Q  S  L  H  C  W  S  R  G  N  S  S  T  C  *  T  T  I  I  I  R  F  S  Y  S  G  A  C  C  H  R  T  S  *  P  I  H  K  *  K  *  Q  G  N  Y  R  K  C  W  C  Y  T  *  Y  S  R  C  T  K  K  W  K  H  G  S  K  G  K  C  S  R  Y  P  F  Q  F  I  S  S  *  *  K  Q  S  G  N  R  S  S  W  C  Y  P  S  A  D  R  F  A  L  S  W  N  P  K  G  K  K  G  R  C  H  C  Y  I  Q  P  L  N  L  S  R  K  Q  S  Q  G  S  T  G  R  N  C  S  T  T  S  K  I  T  Q  G  S  R  G  W  N  D  G  *  S  T  C  D  I  G  N  T  S  K  S  S  G  G  *  G  S  Y  C  S  V  *  A  T  S  R  L  S  S  G  N  *  D  R  F  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10048" stop="10335"/>
                    <exon start="10939" stop="11055"/>
                    <exon start="11143" stop="11556"/>
                    <exon start="11669" stop="12547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1698</number_coding_nucleotides>
                  <number_encoded_amino_acids>566</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFVHMGHQKEELINELTELIDGVSGLPECRSVSKRMYSNLVRRVKLLSPLVEDLKDSDGVEVGDDVVHGLELLKIALISGLELLKSVNEGSKILQALQIENISSRFLDVTEQIEDALSHIPYNKLDLSEEVREQIELVHAQFKRAKGKMESPDEQLEKDLAMAQREQYPDPLIFKRLSEKLHLRTINDLKKESLAIHDMVISSGGDPEECFETIAYLLRKLKDCAMTENPELDALEGDKSLIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKNQGTCRNKRTGAGGSDCDRVAIDALLQKLANGNSEQQRAAAGELRLLAKRNADNRVCIAGAGAIPLLVELLSSSDSRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIDLLCHGTPRGKKDAATAIFNLSIYQGNKVRAVRAGIVPPLVRLLKDPGGGMMDEALAILAILASHQEGKAAIAQSEPLPVLVQVIRTGSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15755" PGL_stop="22834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15755" e_stop="16175"/>
            <exon e_start="19413" e_stop="19886"/>
            <exon e_start="20739" e_stop="21275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15755" e_stop="16175" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.836">
            <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19413" e_stop="19886" e_length="474"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20739" e_stop="21275" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16175"/>
              <exon start="19413" stop="19788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16175"/>
              <exon start="19413" stop="19488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15756" stop="16175"/>
              <exon start="19413" stop="19584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15756" stop="16175"/>
              <exon start="19413" stop="19530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15795" stop="16082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16027" stop="16175"/>
              <exon start="19413" stop="19790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19604" stop="19886"/>
              <exon start="20739" stop="20884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19730" stop="19886"/>
              <exon start="20739" stop="21275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20752" stop="21275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG : GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG : GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</gDNA_template>
            <first_frame> Q  S  S  K  K  L  I  T  S  I  F  G  S  S  T  Y  T  T  V  M  A  T  S  I  R  L  R  R  L  G  A  I  A  A  V  A  G  G  A  Y  T  I  V  R  Q  P  S  F  S  S  N  D  R  G  D  K  L  S  A  L  E  T  F  R  R  K  I  S  D  P  F  A  V  V  P  P  R  N  T  Q  E  A  A  L  I  G  S  S  L  A  N  P  L  D  I  L  V  V  G  G  G  A  T  G  C  G  V  A  L  D  A  A  T  R  G  L  R  V  G  L  V  E  R  E  D  F  A  S  G  T  S  S  R  S  T  K  L  I  H  G   : G  V  R  Y  L  E  K  A  V  F  N  L  D  Y  G  Q  L  K  L  V  F  H  A  L  E  E  R  K  Q  L  I  E  N  A  P  H  L  C  H  A  L  P  C  M  T  P  C  F  D  W  F  D  A  I  Y  Y  W  A  G  L  K  M  Y  D  L  V  A  G  R  H  L  L  H  L  S  R  Y  Y  S  A  Q  E  S  V  E  L  F  P  T  L  A  R  N  G  K  D  K  T  L  K  G  T  V  V  Y  Y  D  G  Q  M  N  D  S  R  V  N  V  A  L  A  C  S  A  A  L  A  G  A  A  V  L  N  H  A  E  V  V  S  L  L  K  D  E  G  D  G  R  I  I  G  A  R  I  R  N  N  L  S   : G  K  E  F  D  A  Y  A  K  V  V  V  N  A  A  G  P  F  C  D  S  V  R  T  L  A  D  K  D  A  K  P  M  I  C  P  S  S  G  V  H  I  I  L  P  D  Y  Y  S  P  D  G  M  G  L  I  V  P  K  T  K  D  G  R  V  V  F  M  L  P  W  L  G  R  T  V  A  G  T  T  D  S  N  T  S  I  T  M  L  P  E  P  H  E  N  E  I  E  F  I  L  D  A  I  S  D  Y  L  N  V  K  V  C  *  F  L  A  I  L  T  F  I  V  F  L  L  I  S  *  C  L  *  Y  K  S  L  *  V  K  Y  L  Y  N  H  Y  S  S  L  G  I  *  K  K  G  L  Y  C  D  Q  L  L  P  L  D  L  C  F  G  L  I  L  N  S  N  V  T  I  L  I  </first_frame>
            <second_frame>  N  L  Q  K  N  *  L  P  P  S  S  V  L  L  P  T  P  P  *  W  P  P  Q  F  A  S  V  V  S  A  L  S  P  P  L  P  E  E  H  T  Q  L  Y  G  S  L  H  S  P  Q  T  I  A  G  T  S  *  A  H  S  R  L  F  A  G  K  F  L  I  L  S  P  S  Y  H  H  G  I  L  R  K  R  L  *  S  V  L  V  W  L  I  L  L  I  Y  L  L  L  E  A  V  L  P  V  A  V  L  H  L  M  L  R  R  E  D  S  G  L  D  W  L  S  E  R  I  L  H  L  V  L  L  Q  G  L  L  S  *  F  M  E  :  E  F  A  I  W  R  K  Q  F  S  T  W  I  T  G  S  *  S  *  F  S  M  P  L  R  S  V  N  S  S  L  K  M  L  H  T  F  V  M  L  Y  R  A  *  L  R  A  L  I  G  L  T  L  S  T  T  G  L  A  *  K  C  M  I  W  L  Q  V  D  T  Y  C  I  C  L  G  I  I  L  H  K  S  L  L  N  C  F  L  P  S  H  E  M  V  K  I  K  L  *  R  E  L  W  Y  I  T  M  D  K  *  M  T  H  A  S  M  L  H  *  H  A  L  L  L  W  L  V  Q  L  C  L  T  M  Q  K  W  Y  P  F  S  K  M  R  V  M  V  E  *  L  V  H  V  F  G  I  I  Y  Q  :  G  R  S  L  M  H  M  Q  K  L  L  L  T  L  P  G  L  F  V  I  L  Y  G  R  *  L  I  K  M  Q  N  P  *  F  V  P  V  V  V  Y  I  L  Y  F  L  I  I  I  L  Q  T  G  W  A  *  L  S  L  K  L  R  M  V  E  W  S  L  C  F  H  G  W  A  E  Q  *  L  V  P  L  I  Q  T  P  A  *  R  C  C  Q  N  L  M  R  M  R  S  N  S  F  W  M  P  S  L  I  I  L  M  L  R  C  V  D  F  *  Q  S  *  H  L  L  F  F  F  *  Y  H  S  A  S  N  I  N  P  C  K  S  N  I  Y  I  I  I  I  P  H  *  A  S  E  K  K  V  Y  I  V  T  N  F  C  L  L  I  S  V  L  V  *  Y  *  I  Q  M  L  L  S  *  S </second_frame>
            <third_frame>   I  F  K  K  I  N  Y  L  H  L  R  F  F  Y  L  H  H  R  N  G  H  L  N  S  P  P  S  S  R  R  Y  R  R  R  C  R  R  S  I  H  N  C  T  A  A  F  I  L  L  K  R  S  R  G  Q  V  K  R  T  R  D  F  S  P  E  N  F  *  S  F  R  R  R  T  T  T  E  Y  S  G  S  G  F  D  R  F  *  F  G  *  S  S  *  Y  T  C  C  W  R  R  C  Y  R  L  R  C  C  T  *  C  C  D  A  R  T  P  G  W  I  G  *  A  R  G  F  C  I  W  Y  F  F  K  V  Y  *  A  N  S  W  R :   S  S  L  F  G  E  S  S  F  Q  L  G  L  R  A  V  K  A  S  F  P  C  P  *  G  A  *  T  A  H  *  K  C  S  T  P  L  S  C  F  T  V  H  D  S  V  L  *  L  V  *  R  Y  L  L  L  G  W  P  E  N  V  *  F  G  C  R  S  T  P  T  A  F  V  *  V  L  F  C  T  R  V  C  *  I  V  S  Y  P  R  T  K  W  *  R  *  N  S  E  G  N  C  G  I  L  R  W  T  N  E  *  L  T  R  Q  C  C  I  S  M  L  C  C  F  G  W  C  S  C  A  *  P  C  R  S  G  I  P  S  Q  R  *  G  *  W  *  N  N  W  C  T  Y  S  E  *  F  I  R :   E  G  V  *  C  I  C  K  S  C  C  *  R  C  R  A  F  L  *  F  C  T  D  V  S  *  *  R  C  K  T  H  D  L  S  Q  *  W  C  T  Y  Y  T  S  *  L  L  F  S  R  R  D  G  L  D  C  P  *  N  *  G  W  S  S  G  L  Y  A  S  M  V  G  Q  N  S  S  W  Y  H  *  F  K  H  Q  H  N  D  A  A  R  T  S  *  E  *  D  R  I  H  F  G  C  H  L  *  L  S  *  C  *  G  V  L  I  S  S  N  P  D  I  Y  C  F  S  F  N  I  I  V  P  L  I  *  I  P  V  S  Q  I  F  I  *  S  L  F  L  I  R  H  L  K  K  R  S  I  L  *  P  T  F  A  S  *  S  L  F  W  F  D  I  E  F  K  C  Y  Y  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15755" stop="16175"/>
                    <exon start="19413" stop="19886"/>
                    <exon start="20739" stop="21079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSKKLITSIFGSSTYTTVMATSIRLRRLGAIAAVAGGAYTIVRQPSFSSNDRGDKLSALETFRRKISDPFAVVPPRNTQEAALIGSSLANPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFASGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFDAIYYWAGLKMYDLVAGRHLLHLSRYYSAQESVELFPTLARNGKDKTLKGTVVYYDGQMNDSRVNVALACSAALAGAAVLNHAEVVSLLKDEGDGRIIGARIRNNLSGKEFDAYAKVVVNAAGPFCDSVRTLADKDAKPMICPSSGVHIILPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITMLPEPHENEIEFILDAISDYLNVKVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15755" e_stop="16175"/>
            <exon e_start="19413" e_stop="19886"/>
            <exon e_start="20739" e_stop="21070"/>
            <exon e_start="22674" e_stop="22834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15755" e_stop="16175" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.836">
            <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19413" e_stop="19886" e_length="474"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20739" e_stop="21070" e_length="332"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="21071" i_stop="22673" i_length="1603"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22674" e_stop="22834" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16175"/>
              <exon start="19413" stop="19788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16175"/>
              <exon start="19413" stop="19488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15756" stop="16175"/>
              <exon start="19413" stop="19584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15756" stop="16175"/>
              <exon start="19413" stop="19530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15795" stop="16082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16027" stop="16175"/>
              <exon start="19413" stop="19790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19545" stop="19886"/>
              <exon start="20739" stop="21070"/>
              <exon start="22674" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19604" stop="19886"/>
              <exon start="20739" stop="20884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG : GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG : GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAG : GTACGACGTACTGATGTTCTATCTGCTTGGAGTGGTATCCGCCCTCTAGCAATTGACCCCAAGGCAAGTAGTACGGCGAGCATCTCCAGAGATCATGTTGTCACTGAAGAACATCCTGGTTTGGTTACAATTACTGGTGGAAAATGGACTACGTATAGAAG</gDNA_template>
            <first_frame> Q  S  S  K  K  L  I  T  S  I  F  G  S  S  T  Y  T  T  V  M  A  T  S  I  R  L  R  R  L  G  A  I  A  A  V  A  G  G  A  Y  T  I  V  R  Q  P  S  F  S  S  N  D  R  G  D  K  L  S  A  L  E  T  F  R  R  K  I  S  D  P  F  A  V  V  P  P  R  N  T  Q  E  A  A  L  I  G  S  S  L  A  N  P  L  D  I  L  V  V  G  G  G  A  T  G  C  G  V  A  L  D  A  A  T  R  G  L  R  V  G  L  V  E  R  E  D  F  A  S  G  T  S  S  R  S  T  K  L  I  H  G   : G  V  R  Y  L  E  K  A  V  F  N  L  D  Y  G  Q  L  K  L  V  F  H  A  L  E  E  R  K  Q  L  I  E  N  A  P  H  L  C  H  A  L  P  C  M  T  P  C  F  D  W  F  D  A  I  Y  Y  W  A  G  L  K  M  Y  D  L  V  A  G  R  H  L  L  H  L  S  R  Y  Y  S  A  Q  E  S  V  E  L  F  P  T  L  A  R  N  G  K  D  K  T  L  K  G  T  V  V  Y  Y  D  G  Q  M  N  D  S  R  V  N  V  A  L  A  C  S  A  A  L  A  G  A  A  V  L  N  H  A  E  V  V  S  L  L  K  D  E  G  D  G  R  I  I  G  A  R  I  R  N  N  L  S   : G  K  E  F  D  A  Y  A  K  V  V  V  N  A  A  G  P  F  C  D  S  V  R  T  L  A  D  K  D  A  K  P  M  I  C  P  S  S  G  V  H  I  I  L  P  D  Y  Y  S  P  D  G  M  G  L  I  V  P  K  T  K  D  G  R  V  V  F  M  L  P  W  L  G  R  T  V  A  G  T  T  D  S  N  T  S  I  T  M  L  P  E  P  H  E  N  E  I  E  F  I  L  D  A  I  S  D  Y  L  N  V  K  :  V  R  R  T  D  V  L  S  A  W  S  G  I  R  P  L  A  I  D  P  K  A  S  S  T  A  S  I  S  R  D  H  V  V  T  E  E  H  P  G  L  V  T  I  T  G  G  K  W  T  T  Y  R   </first_frame>
            <second_frame>  N  L  Q  K  N  *  L  P  P  S  S  V  L  L  P  T  P  P  *  W  P  P  Q  F  A  S  V  V  S  A  L  S  P  P  L  P  E  E  H  T  Q  L  Y  G  S  L  H  S  P  Q  T  I  A  G  T  S  *  A  H  S  R  L  F  A  G  K  F  L  I  L  S  P  S  Y  H  H  G  I  L  R  K  R  L  *  S  V  L  V  W  L  I  L  L  I  Y  L  L  L  E  A  V  L  P  V  A  V  L  H  L  M  L  R  R  E  D  S  G  L  D  W  L  S  E  R  I  L  H  L  V  L  L  Q  G  L  L  S  *  F  M  E  :  E  F  A  I  W  R  K  Q  F  S  T  W  I  T  G  S  *  S  *  F  S  M  P  L  R  S  V  N  S  S  L  K  M  L  H  T  F  V  M  L  Y  R  A  *  L  R  A  L  I  G  L  T  L  S  T  T  G  L  A  *  K  C  M  I  W  L  Q  V  D  T  Y  C  I  C  L  G  I  I  L  H  K  S  L  L  N  C  F  L  P  S  H  E  M  V  K  I  K  L  *  R  E  L  W  Y  I  T  M  D  K  *  M  T  H  A  S  M  L  H  *  H  A  L  L  L  W  L  V  Q  L  C  L  T  M  Q  K  W  Y  P  F  S  K  M  R  V  M  V  E  *  L  V  H  V  F  G  I  I  Y  Q  :  G  R  S  L  M  H  M  Q  K  L  L  L  T  L  P  G  L  F  V  I  L  Y  G  R  *  L  I  K  M  Q  N  P  *  F  V  P  V  V  V  Y  I  L  Y  F  L  I  I  I  L  Q  T  G  W  A  *  L  S  L  K  L  R  M  V  E  W  S  L  C  F  H  G  W  A  E  Q  *  L  V  P  L  I  Q  T  P  A  *  R  C  C  Q  N  L  M  R  M  R  S  N  S  F  W  M  P  S  L  I  I  L  M  L  R :   Y  D  V  L  M  F  Y  L  L  G  V  V  S  A  L  *  Q  L  T  P  R  Q  V  V  R  R  A  S  P  E  I  M  L  S  L  K  N  I  L  V  W  L  Q  L  L  V  E  N  G  L  R  I  E  </second_frame>
            <third_frame>   I  F  K  K  I  N  Y  L  H  L  R  F  F  Y  L  H  H  R  N  G  H  L  N  S  P  P  S  S  R  R  Y  R  R  R  C  R  R  S  I  H  N  C  T  A  A  F  I  L  L  K  R  S  R  G  Q  V  K  R  T  R  D  F  S  P  E  N  F  *  S  F  R  R  R  T  T  T  E  Y  S  G  S  G  F  D  R  F  *  F  G  *  S  S  *  Y  T  C  C  W  R  R  C  Y  R  L  R  C  C  T  *  C  C  D  A  R  T  P  G  W  I  G  *  A  R  G  F  C  I  W  Y  F  F  K  V  Y  *  A  N  S  W  R :   S  S  L  F  G  E  S  S  F  Q  L  G  L  R  A  V  K  A  S  F  P  C  P  *  G  A  *  T  A  H  *  K  C  S  T  P  L  S  C  F  T  V  H  D  S  V  L  *  L  V  *  R  Y  L  L  L  G  W  P  E  N  V  *  F  G  C  R  S  T  P  T  A  F  V  *  V  L  F  C  T  R  V  C  *  I  V  S  Y  P  R  T  K  W  *  R  *  N  S  E  G  N  C  G  I  L  R  W  T  N  E  *  L  T  R  Q  C  C  I  S  M  L  C  C  F  G  W  C  S  C  A  *  P  C  R  S  G  I  P  S  Q  R  *  G  *  W  *  N  N  W  C  T  Y  S  E  *  F  I  R :   E  G  V  *  C  I  C  K  S  C  C  *  R  C  R  A  F  L  *  F  C  T  D  V  S  *  *  R  C  K  T  H  D  L  S  Q  *  W  C  T  Y  Y  T  S  *  L  L  F  S  R  R  D  G  L  D  C  P  *  N  *  G  W  S  S  G  L  Y  A  S  M  V  G  Q  N  S  S  W  Y  H  *  F  K  H  Q  H  N  D  A  A  R  T  S  *  E  *  D  R  I  H  F  G  C  H  L  *  L  S  *  C  *   : G  T  T  Y  *  C  S  I  C  L  E  W  Y  P  P  S  S  N  *  P  Q  G  K  *  Y  G  E  H  L  Q  R  S  C  C  H  *  R  T  S  W  F  G  Y  N  Y  W  W  K  M  D  Y  V  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15755" stop="16175"/>
                    <exon start="19413" stop="19886"/>
                    <exon start="20739" stop="21070"/>
                    <exon start="22674" stop="22832"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSKKLITSIFGSSTYTTVMATSIRLRRLGAIAAVAGGAYTIVRQPSFSSNDRGDKLSALETFRRKISDPFAVVPPRNTQEAALIGSSLANPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFASGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFDAIYYWAGLKMYDLVAGRHLLHLSRYYSAQESVELFPTLARNGKDKTLKGTVVYYDGQMNDSRVNVALACSAALAGAAVLNHAEVVSLLKDEGDGRIIGARIRNNLSGKEFDAYAKVVVNAAGPFCDSVRTLADKDAKPMICPSSGVHIILPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITMLPEPHENEIEFILDAISDYLNVKVRRTDVLSAWSGIRPLAIDPKASSTASISRDHVVTEEHPGLVTITGGKWTTYR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 56 chains have been computed
$ 
$ memory statistics:
$ 51808 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 2158 bytes was the average size of a spliced alignment
$ 10920 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2184 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 61 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:57:20
-->
